Multiple sequence alignment - TraesCS2D01G485300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G485300 chr2D 100.000 4831 0 0 1 4831 585912685 585917515 0.000000e+00 8922.0
1 TraesCS2D01G485300 chr2D 83.156 1692 244 23 2523 4207 586153028 586154685 0.000000e+00 1507.0
2 TraesCS2D01G485300 chr2D 83.668 1145 174 10 2523 3662 585894811 585893675 0.000000e+00 1066.0
3 TraesCS2D01G485300 chr2D 78.294 1442 257 34 1026 2426 585896308 585894882 0.000000e+00 878.0
4 TraesCS2D01G485300 chr2D 76.174 852 175 22 1416 2247 610886695 610887538 1.730000e-114 424.0
5 TraesCS2D01G485300 chr2D 100.000 59 0 0 5149 5207 585917833 585917891 5.510000e-20 110.0
6 TraesCS2D01G485300 chr2B 95.723 2268 67 8 2275 4533 707632241 707629995 0.000000e+00 3624.0
7 TraesCS2D01G485300 chr2B 96.353 2029 46 6 2275 4298 707691930 707689925 0.000000e+00 3312.0
8 TraesCS2D01G485300 chr2B 91.547 2295 128 25 666 2924 707465412 707463148 0.000000e+00 3103.0
9 TraesCS2D01G485300 chr2B 94.610 1614 67 10 666 2267 707633892 707632287 0.000000e+00 2481.0
10 TraesCS2D01G485300 chr2B 94.001 1617 71 10 666 2267 707693581 707691976 0.000000e+00 2425.0
11 TraesCS2D01G485300 chr2B 92.775 1398 80 7 2929 4308 707463011 707461617 0.000000e+00 2002.0
12 TraesCS2D01G485300 chr2B 84.217 1698 229 30 2526 4210 707672074 707670403 0.000000e+00 1615.0
13 TraesCS2D01G485300 chr2B 83.856 1691 252 18 2523 4205 707415951 707414274 0.000000e+00 1591.0
14 TraesCS2D01G485300 chr2B 78.645 1461 239 38 1022 2426 707673590 707672147 0.000000e+00 902.0
15 TraesCS2D01G485300 chr2B 78.532 1444 252 35 1025 2426 707417449 707416022 0.000000e+00 896.0
16 TraesCS2D01G485300 chr2B 90.286 175 15 2 4523 4696 707629967 707629794 1.460000e-55 228.0
17 TraesCS2D01G485300 chr2B 87.952 83 8 2 481 563 707466853 707466773 4.290000e-16 97.1
18 TraesCS2D01G485300 chr2B 85.556 90 10 3 474 563 707640076 707639990 2.000000e-14 91.6
19 TraesCS2D01G485300 chr2B 100.000 29 0 0 592 620 707465454 707465426 3.000000e-03 54.7
20 TraesCS2D01G485300 chr2B 100.000 29 0 0 592 620 707633934 707633906 3.000000e-03 54.7
21 TraesCS2D01G485300 chr2B 100.000 28 0 0 593 620 707693622 707693595 9.000000e-03 52.8
22 TraesCS2D01G485300 chr2A 91.743 2192 139 15 2275 4456 720315813 720313654 0.000000e+00 3007.0
23 TraesCS2D01G485300 chr2A 91.920 1708 113 10 2427 4132 721032186 721030502 0.000000e+00 2366.0
24 TraesCS2D01G485300 chr2A 94.373 1404 64 6 867 2262 720521558 720520162 0.000000e+00 2141.0
25 TraesCS2D01G485300 chr2A 84.342 1686 241 21 2529 4206 720061164 720059494 0.000000e+00 1629.0
26 TraesCS2D01G485300 chr2A 87.911 1307 119 18 1099 2395 721033457 721032180 0.000000e+00 1502.0
27 TraesCS2D01G485300 chr2A 80.299 1269 220 19 1022 2271 720062674 720061417 0.000000e+00 931.0
28 TraesCS2D01G485300 chr2A 90.625 480 38 5 2 475 31705120 31704642 9.520000e-177 630.0
29 TraesCS2D01G485300 chr2A 90.456 482 37 7 2 476 47678422 47678901 1.230000e-175 627.0
30 TraesCS2D01G485300 chr2A 81.088 386 43 13 481 864 720522019 720521662 1.100000e-71 281.0
31 TraesCS2D01G485300 chr2A 88.462 156 15 3 4575 4730 720288029 720287877 8.900000e-43 185.0
32 TraesCS2D01G485300 chr2A 93.220 59 3 1 4478 4536 720288100 720288043 9.290000e-13 86.1
33 TraesCS2D01G485300 chr7D 92.917 480 28 4 1 475 507241035 507241513 0.000000e+00 693.0
34 TraesCS2D01G485300 chr7D 94.915 59 3 0 5149 5207 199078371 199078313 5.550000e-15 93.5
35 TraesCS2D01G485300 chr7A 92.769 484 26 6 1 475 577197730 577198213 0.000000e+00 691.0
36 TraesCS2D01G485300 chr3A 90.283 494 39 7 2 487 691449833 691450325 5.690000e-179 638.0
37 TraesCS2D01G485300 chr3A 90.062 483 39 8 2 477 676765651 676765171 7.410000e-173 617.0
38 TraesCS2D01G485300 chr5A 90.644 481 38 5 2 476 607486580 607486101 2.650000e-177 632.0
39 TraesCS2D01G485300 chr3B 90.377 478 40 4 1 473 763043643 763044119 1.590000e-174 623.0
40 TraesCS2D01G485300 chr1B 89.669 484 42 5 1 477 175676826 175677308 1.240000e-170 610.0
41 TraesCS2D01G485300 chr6D 76.513 413 93 3 1841 2251 446622747 446622337 6.790000e-54 222.0
42 TraesCS2D01G485300 chr5D 94.915 59 3 0 5149 5207 558957595 558957537 5.550000e-15 93.5
43 TraesCS2D01G485300 chr4D 94.643 56 3 0 5149 5204 308742431 308742486 2.580000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G485300 chr2D 585912685 585917891 5206 False 4516.000000 8922 100.000000 1 5207 2 chr2D.!!$F3 5206
1 TraesCS2D01G485300 chr2D 586153028 586154685 1657 False 1507.000000 1507 83.156000 2523 4207 1 chr2D.!!$F1 1684
2 TraesCS2D01G485300 chr2D 585893675 585896308 2633 True 972.000000 1066 80.981000 1026 3662 2 chr2D.!!$R1 2636
3 TraesCS2D01G485300 chr2D 610886695 610887538 843 False 424.000000 424 76.174000 1416 2247 1 chr2D.!!$F2 831
4 TraesCS2D01G485300 chr2B 707689925 707693622 3697 True 1929.933333 3312 96.784667 593 4298 3 chr2B.!!$R6 3705
5 TraesCS2D01G485300 chr2B 707629794 707633934 4140 True 1596.925000 3624 95.154750 592 4696 4 chr2B.!!$R4 4104
6 TraesCS2D01G485300 chr2B 707461617 707466853 5236 True 1314.200000 3103 93.068500 481 4308 4 chr2B.!!$R3 3827
7 TraesCS2D01G485300 chr2B 707670403 707673590 3187 True 1258.500000 1615 81.431000 1022 4210 2 chr2B.!!$R5 3188
8 TraesCS2D01G485300 chr2B 707414274 707417449 3175 True 1243.500000 1591 81.194000 1025 4205 2 chr2B.!!$R2 3180
9 TraesCS2D01G485300 chr2A 720313654 720315813 2159 True 3007.000000 3007 91.743000 2275 4456 1 chr2A.!!$R2 2181
10 TraesCS2D01G485300 chr2A 721030502 721033457 2955 True 1934.000000 2366 89.915500 1099 4132 2 chr2A.!!$R6 3033
11 TraesCS2D01G485300 chr2A 720059494 720062674 3180 True 1280.000000 1629 82.320500 1022 4206 2 chr2A.!!$R3 3184
12 TraesCS2D01G485300 chr2A 720520162 720522019 1857 True 1211.000000 2141 87.730500 481 2262 2 chr2A.!!$R5 1781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 326 0.029681 ACTCCTGACATGGGCCCTAT 60.030 55.0 25.70 12.3 0.00 2.57 F
406 407 0.032615 ATGAATGGGCCCGGCTTAAA 60.033 50.0 19.37 0.0 0.00 1.52 F
620 1909 0.037975 GAAGGAGTTCGCCGTGGTTA 60.038 55.0 0.00 0.0 0.00 2.85 F
648 1937 0.251634 GGTTGAGGGAGAAGCAGGAG 59.748 60.0 0.00 0.0 0.00 3.69 F
649 1938 0.392327 GTTGAGGGAGAAGCAGGAGC 60.392 60.0 0.00 0.0 42.56 4.70 F
1035 2440 0.729140 CGCCGTGCATTCCAGTTTTC 60.729 55.0 0.00 0.0 0.00 2.29 F
2757 4337 0.034896 GGCACACGGAAGAAGAAGGA 59.965 55.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 2716 0.038159 GAGTGTGACCTTGGGAGTCG 60.038 60.000 0.00 0.00 37.04 4.18 R
1743 3165 0.297820 GCGTAAGATGTGCGTACTGC 59.702 55.000 4.97 3.22 43.04 4.40 R
2058 3508 2.125952 TCAGTCATGCAGTCGCCG 60.126 61.111 0.00 0.00 37.32 6.46 R
2472 3981 6.238022 GGGTCGAATAAAAGTGCTACACATAC 60.238 42.308 0.00 0.00 36.74 2.39 R
2540 4091 7.697352 TTTGAACTGCAAAATGAATACTGTG 57.303 32.000 0.00 0.00 43.18 3.66 R
2761 4341 1.134401 CCTAGCATCGGTCCATTGTGT 60.134 52.381 0.00 0.00 0.00 3.72 R
4746 6540 0.107410 TGACAGGAGCCAAACGTGTT 60.107 50.000 0.00 0.00 36.68 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 7.872113 ATTCAGGATTGGTCTCATTCTAAAC 57.128 36.000 0.00 0.00 0.00 2.01
139 140 6.373005 TCAGGATTGGTCTCATTCTAAACA 57.627 37.500 0.00 0.00 0.00 2.83
140 141 6.962182 TCAGGATTGGTCTCATTCTAAACAT 58.038 36.000 0.00 0.00 0.00 2.71
141 142 7.050377 TCAGGATTGGTCTCATTCTAAACATC 58.950 38.462 0.00 0.00 0.00 3.06
142 143 7.052873 CAGGATTGGTCTCATTCTAAACATCT 58.947 38.462 0.00 0.00 0.00 2.90
143 144 7.555554 CAGGATTGGTCTCATTCTAAACATCTT 59.444 37.037 0.00 0.00 0.00 2.40
144 145 8.772250 AGGATTGGTCTCATTCTAAACATCTTA 58.228 33.333 0.00 0.00 0.00 2.10
145 146 9.566432 GGATTGGTCTCATTCTAAACATCTTAT 57.434 33.333 0.00 0.00 0.00 1.73
228 229 8.964476 TTGGCCATCTAAAAATGTAAACAAAA 57.036 26.923 6.09 0.00 0.00 2.44
229 230 8.964476 TGGCCATCTAAAAATGTAAACAAAAA 57.036 26.923 0.00 0.00 0.00 1.94
230 231 9.566432 TGGCCATCTAAAAATGTAAACAAAAAT 57.434 25.926 0.00 0.00 0.00 1.82
244 245 9.553064 TGTAAACAAAAATAAAATGCATGGACT 57.447 25.926 0.00 0.00 0.00 3.85
247 248 8.449251 AACAAAAATAAAATGCATGGACTTGT 57.551 26.923 0.00 1.66 0.00 3.16
248 249 8.449251 ACAAAAATAAAATGCATGGACTTGTT 57.551 26.923 0.00 0.00 0.00 2.83
249 250 8.901793 ACAAAAATAAAATGCATGGACTTGTTT 58.098 25.926 0.00 0.00 0.00 2.83
250 251 9.171701 CAAAAATAAAATGCATGGACTTGTTTG 57.828 29.630 0.00 2.99 0.00 2.93
251 252 8.674263 AAAATAAAATGCATGGACTTGTTTGA 57.326 26.923 0.00 0.00 0.00 2.69
252 253 7.894376 AATAAAATGCATGGACTTGTTTGAG 57.106 32.000 0.00 0.00 0.00 3.02
253 254 5.534207 AAAATGCATGGACTTGTTTGAGA 57.466 34.783 0.00 0.00 0.00 3.27
254 255 4.778534 AATGCATGGACTTGTTTGAGAG 57.221 40.909 0.00 0.00 0.00 3.20
255 256 3.490439 TGCATGGACTTGTTTGAGAGA 57.510 42.857 0.00 0.00 0.00 3.10
256 257 3.405831 TGCATGGACTTGTTTGAGAGAG 58.594 45.455 0.00 0.00 0.00 3.20
257 258 3.071457 TGCATGGACTTGTTTGAGAGAGA 59.929 43.478 0.00 0.00 0.00 3.10
258 259 3.683822 GCATGGACTTGTTTGAGAGAGAG 59.316 47.826 0.00 0.00 0.00 3.20
259 260 4.252073 CATGGACTTGTTTGAGAGAGAGG 58.748 47.826 0.00 0.00 0.00 3.69
260 261 3.576861 TGGACTTGTTTGAGAGAGAGGA 58.423 45.455 0.00 0.00 0.00 3.71
261 262 3.576118 TGGACTTGTTTGAGAGAGAGGAG 59.424 47.826 0.00 0.00 0.00 3.69
262 263 3.829601 GGACTTGTTTGAGAGAGAGGAGA 59.170 47.826 0.00 0.00 0.00 3.71
263 264 4.082245 GGACTTGTTTGAGAGAGAGGAGAG 60.082 50.000 0.00 0.00 0.00 3.20
264 265 4.735369 ACTTGTTTGAGAGAGAGGAGAGA 58.265 43.478 0.00 0.00 0.00 3.10
265 266 5.332743 ACTTGTTTGAGAGAGAGGAGAGAT 58.667 41.667 0.00 0.00 0.00 2.75
266 267 5.185635 ACTTGTTTGAGAGAGAGGAGAGATG 59.814 44.000 0.00 0.00 0.00 2.90
267 268 3.446873 TGTTTGAGAGAGAGGAGAGATGC 59.553 47.826 0.00 0.00 0.00 3.91
268 269 3.668141 TTGAGAGAGAGGAGAGATGCT 57.332 47.619 0.00 0.00 0.00 3.79
269 270 3.213206 TGAGAGAGAGGAGAGATGCTC 57.787 52.381 0.00 0.00 43.17 4.26
283 284 3.812203 GCTCCATGCATGCGTACA 58.188 55.556 21.69 0.68 42.31 2.90
284 285 2.324215 GCTCCATGCATGCGTACAT 58.676 52.632 21.69 0.00 42.31 2.29
285 286 0.236711 GCTCCATGCATGCGTACATC 59.763 55.000 21.69 0.00 42.31 3.06
286 287 1.875009 CTCCATGCATGCGTACATCT 58.125 50.000 21.69 0.00 32.87 2.90
287 288 1.797046 CTCCATGCATGCGTACATCTC 59.203 52.381 21.69 0.00 32.87 2.75
288 289 1.138661 TCCATGCATGCGTACATCTCA 59.861 47.619 21.69 0.00 32.87 3.27
289 290 1.262417 CCATGCATGCGTACATCTCAC 59.738 52.381 21.69 0.00 32.87 3.51
290 291 2.207590 CATGCATGCGTACATCTCACT 58.792 47.619 14.93 0.00 32.87 3.41
291 292 1.643880 TGCATGCGTACATCTCACTG 58.356 50.000 14.09 0.00 32.87 3.66
292 293 1.066929 TGCATGCGTACATCTCACTGT 60.067 47.619 14.09 0.00 32.87 3.55
293 294 2.165437 TGCATGCGTACATCTCACTGTA 59.835 45.455 14.09 0.00 32.87 2.74
294 295 3.186909 GCATGCGTACATCTCACTGTAA 58.813 45.455 0.00 0.00 33.59 2.41
295 296 3.616821 GCATGCGTACATCTCACTGTAAA 59.383 43.478 0.00 0.00 33.59 2.01
296 297 4.092821 GCATGCGTACATCTCACTGTAAAA 59.907 41.667 0.00 0.00 33.59 1.52
297 298 5.390461 GCATGCGTACATCTCACTGTAAAAA 60.390 40.000 0.00 0.00 33.59 1.94
298 299 5.839262 TGCGTACATCTCACTGTAAAAAG 57.161 39.130 0.00 0.00 33.59 2.27
299 300 5.294356 TGCGTACATCTCACTGTAAAAAGT 58.706 37.500 0.00 0.00 33.59 2.66
300 301 6.448852 TGCGTACATCTCACTGTAAAAAGTA 58.551 36.000 0.00 0.00 33.59 2.24
301 302 6.364165 TGCGTACATCTCACTGTAAAAAGTAC 59.636 38.462 0.00 0.00 33.59 2.73
302 303 6.585322 GCGTACATCTCACTGTAAAAAGTACT 59.415 38.462 0.00 0.00 33.59 2.73
303 304 7.410513 GCGTACATCTCACTGTAAAAAGTACTG 60.411 40.741 0.00 0.00 33.59 2.74
304 305 6.787085 ACATCTCACTGTAAAAAGTACTGC 57.213 37.500 0.00 0.00 0.00 4.40
305 306 5.701290 ACATCTCACTGTAAAAAGTACTGCC 59.299 40.000 0.00 0.00 0.00 4.85
306 307 5.284861 TCTCACTGTAAAAAGTACTGCCA 57.715 39.130 0.00 0.00 0.00 4.92
307 308 5.054477 TCTCACTGTAAAAAGTACTGCCAC 58.946 41.667 0.00 0.00 0.00 5.01
308 309 5.031066 TCACTGTAAAAAGTACTGCCACT 57.969 39.130 0.00 0.00 0.00 4.00
309 310 5.054477 TCACTGTAAAAAGTACTGCCACTC 58.946 41.667 0.00 0.00 0.00 3.51
310 311 4.213482 CACTGTAAAAAGTACTGCCACTCC 59.787 45.833 0.00 0.00 0.00 3.85
311 312 4.102681 ACTGTAAAAAGTACTGCCACTCCT 59.897 41.667 0.00 0.00 0.00 3.69
312 313 4.385825 TGTAAAAAGTACTGCCACTCCTG 58.614 43.478 0.00 0.00 0.00 3.86
313 314 3.857157 AAAAAGTACTGCCACTCCTGA 57.143 42.857 0.00 0.00 0.00 3.86
314 315 2.841442 AAAGTACTGCCACTCCTGAC 57.159 50.000 0.00 0.00 0.00 3.51
315 316 1.717032 AAGTACTGCCACTCCTGACA 58.283 50.000 0.00 0.00 0.00 3.58
316 317 1.944177 AGTACTGCCACTCCTGACAT 58.056 50.000 0.00 0.00 0.00 3.06
317 318 1.552337 AGTACTGCCACTCCTGACATG 59.448 52.381 0.00 0.00 0.00 3.21
318 319 0.904649 TACTGCCACTCCTGACATGG 59.095 55.000 0.00 0.00 36.51 3.66
319 320 1.077930 CTGCCACTCCTGACATGGG 60.078 63.158 0.00 0.00 33.81 4.00
320 321 2.439156 GCCACTCCTGACATGGGC 60.439 66.667 0.00 0.00 33.81 5.36
321 322 2.273449 CCACTCCTGACATGGGCC 59.727 66.667 0.00 0.00 0.00 5.80
322 323 2.273449 CACTCCTGACATGGGCCC 59.727 66.667 17.59 17.59 0.00 5.80
323 324 2.125912 ACTCCTGACATGGGCCCT 59.874 61.111 25.70 1.15 0.00 5.19
324 325 0.982852 CACTCCTGACATGGGCCCTA 60.983 60.000 25.70 10.18 0.00 3.53
325 326 0.029681 ACTCCTGACATGGGCCCTAT 60.030 55.000 25.70 12.30 0.00 2.57
326 327 1.143813 CTCCTGACATGGGCCCTATT 58.856 55.000 25.70 6.28 0.00 1.73
327 328 2.338809 CTCCTGACATGGGCCCTATTA 58.661 52.381 25.70 1.52 0.00 0.98
328 329 2.711009 CTCCTGACATGGGCCCTATTAA 59.289 50.000 25.70 1.02 0.00 1.40
329 330 3.331889 CTCCTGACATGGGCCCTATTAAT 59.668 47.826 25.70 4.12 0.00 1.40
330 331 3.330701 TCCTGACATGGGCCCTATTAATC 59.669 47.826 25.70 12.27 0.00 1.75
331 332 3.331889 CCTGACATGGGCCCTATTAATCT 59.668 47.826 25.70 0.00 0.00 2.40
332 333 4.566488 CCTGACATGGGCCCTATTAATCTC 60.566 50.000 25.70 5.31 0.00 2.75
333 334 3.980022 TGACATGGGCCCTATTAATCTCA 59.020 43.478 25.70 8.15 0.00 3.27
334 335 4.202461 TGACATGGGCCCTATTAATCTCAC 60.202 45.833 25.70 2.63 0.00 3.51
335 336 3.721575 ACATGGGCCCTATTAATCTCACA 59.278 43.478 25.70 0.00 0.00 3.58
336 337 4.354987 ACATGGGCCCTATTAATCTCACAT 59.645 41.667 25.70 0.00 0.00 3.21
337 338 5.162947 ACATGGGCCCTATTAATCTCACATT 60.163 40.000 25.70 0.00 0.00 2.71
338 339 4.728772 TGGGCCCTATTAATCTCACATTG 58.271 43.478 25.70 0.00 0.00 2.82
339 340 4.415179 TGGGCCCTATTAATCTCACATTGA 59.585 41.667 25.70 0.00 0.00 2.57
340 341 5.074929 TGGGCCCTATTAATCTCACATTGAT 59.925 40.000 25.70 0.00 0.00 2.57
341 342 6.012745 GGGCCCTATTAATCTCACATTGATT 58.987 40.000 17.04 0.00 37.78 2.57
342 343 6.494835 GGGCCCTATTAATCTCACATTGATTT 59.505 38.462 17.04 0.00 35.90 2.17
343 344 7.373493 GGCCCTATTAATCTCACATTGATTTG 58.627 38.462 0.00 0.00 35.90 2.32
344 345 7.231317 GGCCCTATTAATCTCACATTGATTTGA 59.769 37.037 0.00 0.00 35.90 2.69
345 346 8.078596 GCCCTATTAATCTCACATTGATTTGAC 58.921 37.037 0.00 0.00 35.90 3.18
346 347 9.347240 CCCTATTAATCTCACATTGATTTGACT 57.653 33.333 0.00 0.00 35.90 3.41
397 398 7.886629 ACATGATTATACATATGAATGGGCC 57.113 36.000 10.38 0.00 37.43 5.80
398 399 6.835488 ACATGATTATACATATGAATGGGCCC 59.165 38.462 17.59 17.59 37.43 5.80
399 400 5.436175 TGATTATACATATGAATGGGCCCG 58.564 41.667 19.37 1.73 37.43 6.13
400 401 2.806945 ATACATATGAATGGGCCCGG 57.193 50.000 19.37 0.00 37.43 5.73
401 402 0.037590 TACATATGAATGGGCCCGGC 59.962 55.000 19.37 9.52 37.43 6.13
402 403 1.075482 CATATGAATGGGCCCGGCT 59.925 57.895 19.37 2.90 0.00 5.52
403 404 0.540365 CATATGAATGGGCCCGGCTT 60.540 55.000 19.37 10.81 0.00 4.35
404 405 1.072266 ATATGAATGGGCCCGGCTTA 58.928 50.000 19.37 11.41 0.00 3.09
405 406 0.847373 TATGAATGGGCCCGGCTTAA 59.153 50.000 19.37 3.99 0.00 1.85
406 407 0.032615 ATGAATGGGCCCGGCTTAAA 60.033 50.000 19.37 0.00 0.00 1.52
407 408 0.251832 TGAATGGGCCCGGCTTAAAA 60.252 50.000 19.37 0.00 0.00 1.52
408 409 0.174845 GAATGGGCCCGGCTTAAAAC 59.825 55.000 19.37 0.00 0.00 2.43
409 410 0.543174 AATGGGCCCGGCTTAAAACA 60.543 50.000 19.37 0.00 0.00 2.83
410 411 1.254975 ATGGGCCCGGCTTAAAACAC 61.255 55.000 19.37 0.00 0.00 3.32
411 412 1.904378 GGGCCCGGCTTAAAACACA 60.904 57.895 5.69 0.00 0.00 3.72
412 413 1.254975 GGGCCCGGCTTAAAACACAT 61.255 55.000 5.69 0.00 0.00 3.21
413 414 0.172578 GGCCCGGCTTAAAACACATC 59.827 55.000 9.86 0.00 0.00 3.06
414 415 0.885196 GCCCGGCTTAAAACACATCA 59.115 50.000 0.71 0.00 0.00 3.07
415 416 1.402325 GCCCGGCTTAAAACACATCAC 60.402 52.381 0.71 0.00 0.00 3.06
416 417 1.883275 CCCGGCTTAAAACACATCACA 59.117 47.619 0.00 0.00 0.00 3.58
417 418 2.294791 CCCGGCTTAAAACACATCACAA 59.705 45.455 0.00 0.00 0.00 3.33
418 419 3.243569 CCCGGCTTAAAACACATCACAAA 60.244 43.478 0.00 0.00 0.00 2.83
419 420 3.980775 CCGGCTTAAAACACATCACAAAG 59.019 43.478 0.00 0.00 0.00 2.77
420 421 3.425193 CGGCTTAAAACACATCACAAAGC 59.575 43.478 0.00 0.00 37.67 3.51
421 422 4.620982 GGCTTAAAACACATCACAAAGCT 58.379 39.130 0.00 0.00 38.29 3.74
422 423 4.445385 GGCTTAAAACACATCACAAAGCTG 59.555 41.667 0.00 0.00 38.29 4.24
423 424 5.280945 GCTTAAAACACATCACAAAGCTGA 58.719 37.500 0.00 0.00 35.98 4.26
424 425 5.748152 GCTTAAAACACATCACAAAGCTGAA 59.252 36.000 0.00 0.00 35.98 3.02
425 426 6.291796 GCTTAAAACACATCACAAAGCTGAAC 60.292 38.462 0.00 0.00 35.98 3.18
426 427 3.338818 AACACATCACAAAGCTGAACG 57.661 42.857 0.00 0.00 0.00 3.95
427 428 1.603802 ACACATCACAAAGCTGAACGG 59.396 47.619 0.00 0.00 0.00 4.44
428 429 1.603802 CACATCACAAAGCTGAACGGT 59.396 47.619 0.00 0.00 0.00 4.83
429 430 2.805671 CACATCACAAAGCTGAACGGTA 59.194 45.455 0.00 0.00 0.00 4.02
430 431 3.067106 ACATCACAAAGCTGAACGGTAG 58.933 45.455 0.00 0.00 0.00 3.18
431 432 3.244078 ACATCACAAAGCTGAACGGTAGA 60.244 43.478 0.00 0.00 0.00 2.59
432 433 3.678056 TCACAAAGCTGAACGGTAGAT 57.322 42.857 0.00 0.00 0.00 1.98
433 434 3.325870 TCACAAAGCTGAACGGTAGATG 58.674 45.455 0.00 0.00 0.00 2.90
434 435 2.416547 CACAAAGCTGAACGGTAGATGG 59.583 50.000 0.00 0.00 0.00 3.51
435 436 2.038557 ACAAAGCTGAACGGTAGATGGT 59.961 45.455 0.00 0.00 0.00 3.55
436 437 3.074412 CAAAGCTGAACGGTAGATGGTT 58.926 45.455 0.00 0.00 0.00 3.67
437 438 4.250464 CAAAGCTGAACGGTAGATGGTTA 58.750 43.478 0.00 0.00 0.00 2.85
438 439 3.802948 AGCTGAACGGTAGATGGTTAG 57.197 47.619 0.00 0.00 0.00 2.34
439 440 2.159085 AGCTGAACGGTAGATGGTTAGC 60.159 50.000 0.00 0.00 0.00 3.09
440 441 2.822764 CTGAACGGTAGATGGTTAGCC 58.177 52.381 0.00 0.00 0.00 3.93
441 442 1.135527 TGAACGGTAGATGGTTAGCCG 59.864 52.381 0.00 0.00 46.83 5.52
442 443 0.462789 AACGGTAGATGGTTAGCCGG 59.537 55.000 0.00 0.00 45.85 6.13
443 444 0.685458 ACGGTAGATGGTTAGCCGGT 60.685 55.000 1.90 0.00 45.85 5.28
444 445 1.321474 CGGTAGATGGTTAGCCGGTA 58.679 55.000 1.90 0.00 38.86 4.02
445 446 1.268899 CGGTAGATGGTTAGCCGGTAG 59.731 57.143 1.90 0.00 38.86 3.18
446 447 1.000618 GGTAGATGGTTAGCCGGTAGC 59.999 57.143 1.90 0.00 44.25 3.58
455 456 4.840005 GCCGGTAGCTCCCAGCAC 62.840 72.222 1.90 0.00 45.56 4.40
456 457 4.162690 CCGGTAGCTCCCAGCACC 62.163 72.222 0.00 0.00 45.56 5.01
458 459 4.162690 GGTAGCTCCCAGCACCGG 62.163 72.222 0.00 0.00 45.56 5.28
459 460 3.391382 GTAGCTCCCAGCACCGGT 61.391 66.667 0.00 0.00 45.56 5.28
460 461 2.056223 GTAGCTCCCAGCACCGGTA 61.056 63.158 6.87 0.00 45.56 4.02
461 462 1.305465 TAGCTCCCAGCACCGGTAA 60.305 57.895 6.87 0.00 45.56 2.85
462 463 0.905809 TAGCTCCCAGCACCGGTAAA 60.906 55.000 6.87 0.00 45.56 2.01
463 464 1.302993 GCTCCCAGCACCGGTAAAA 60.303 57.895 6.87 0.00 41.89 1.52
464 465 1.305930 GCTCCCAGCACCGGTAAAAG 61.306 60.000 6.87 0.00 41.89 2.27
465 466 0.323629 CTCCCAGCACCGGTAAAAGA 59.676 55.000 6.87 0.00 0.00 2.52
466 467 0.323629 TCCCAGCACCGGTAAAAGAG 59.676 55.000 6.87 0.00 0.00 2.85
467 468 0.323629 CCCAGCACCGGTAAAAGAGA 59.676 55.000 6.87 0.00 0.00 3.10
468 469 1.439679 CCAGCACCGGTAAAAGAGAC 58.560 55.000 6.87 0.00 0.00 3.36
469 470 1.002087 CCAGCACCGGTAAAAGAGACT 59.998 52.381 6.87 0.00 0.00 3.24
470 471 2.550208 CCAGCACCGGTAAAAGAGACTT 60.550 50.000 6.87 0.00 0.00 3.01
471 472 3.139077 CAGCACCGGTAAAAGAGACTTT 58.861 45.455 6.87 0.00 0.00 2.66
472 473 3.058914 CAGCACCGGTAAAAGAGACTTTG 60.059 47.826 6.87 0.00 0.00 2.77
473 474 2.350484 GCACCGGTAAAAGAGACTTTGC 60.350 50.000 6.87 0.00 0.00 3.68
474 475 2.096417 CACCGGTAAAAGAGACTTTGCG 60.096 50.000 6.87 0.00 0.00 4.85
475 476 1.463444 CCGGTAAAAGAGACTTTGCGG 59.537 52.381 0.00 0.00 0.00 5.69
476 477 1.463444 CGGTAAAAGAGACTTTGCGGG 59.537 52.381 0.00 0.00 0.00 6.13
477 478 1.810755 GGTAAAAGAGACTTTGCGGGG 59.189 52.381 0.00 0.00 0.00 5.73
478 479 1.199327 GTAAAAGAGACTTTGCGGGGC 59.801 52.381 0.00 0.00 0.00 5.80
479 480 0.467290 AAAAGAGACTTTGCGGGGCA 60.467 50.000 0.00 0.00 36.47 5.36
492 493 1.452108 GGGGCACGAATGGAGAAGG 60.452 63.158 0.00 0.00 0.00 3.46
495 496 0.960364 GGCACGAATGGAGAAGGCAA 60.960 55.000 0.00 0.00 0.00 4.52
534 535 2.577059 GACCATGGCGTCGAGGAA 59.423 61.111 13.04 0.00 0.00 3.36
620 1909 0.037975 GAAGGAGTTCGCCGTGGTTA 60.038 55.000 0.00 0.00 0.00 2.85
621 1910 0.320160 AAGGAGTTCGCCGTGGTTAC 60.320 55.000 0.00 0.00 0.00 2.50
622 1911 1.739196 GGAGTTCGCCGTGGTTACC 60.739 63.158 0.00 0.00 0.00 2.85
623 1912 1.291272 GAGTTCGCCGTGGTTACCT 59.709 57.895 2.07 0.00 0.00 3.08
624 1913 0.320160 GAGTTCGCCGTGGTTACCTT 60.320 55.000 2.07 0.00 0.00 3.50
625 1914 0.320160 AGTTCGCCGTGGTTACCTTC 60.320 55.000 2.07 0.00 0.00 3.46
626 1915 0.600782 GTTCGCCGTGGTTACCTTCA 60.601 55.000 2.07 0.00 0.00 3.02
627 1916 0.322322 TTCGCCGTGGTTACCTTCAT 59.678 50.000 2.07 0.00 0.00 2.57
628 1917 0.390603 TCGCCGTGGTTACCTTCATG 60.391 55.000 2.07 0.00 0.00 3.07
629 1918 1.366111 CGCCGTGGTTACCTTCATGG 61.366 60.000 2.07 0.00 41.64 3.66
630 1919 1.029947 GCCGTGGTTACCTTCATGGG 61.030 60.000 2.07 0.00 39.70 4.00
631 1920 0.326927 CCGTGGTTACCTTCATGGGT 59.673 55.000 2.07 0.00 42.86 4.51
632 1921 1.271707 CCGTGGTTACCTTCATGGGTT 60.272 52.381 2.07 0.00 40.48 4.11
633 1922 1.810151 CGTGGTTACCTTCATGGGTTG 59.190 52.381 2.07 0.00 40.48 3.77
634 1923 2.551287 CGTGGTTACCTTCATGGGTTGA 60.551 50.000 2.07 0.00 40.48 3.18
635 1924 3.081804 GTGGTTACCTTCATGGGTTGAG 58.918 50.000 2.07 0.00 40.48 3.02
636 1925 2.041081 TGGTTACCTTCATGGGTTGAGG 59.959 50.000 2.07 0.00 40.48 3.86
642 1931 2.996631 CTTCATGGGTTGAGGGAGAAG 58.003 52.381 0.00 0.00 35.27 2.85
643 1932 0.620556 TCATGGGTTGAGGGAGAAGC 59.379 55.000 0.00 0.00 0.00 3.86
644 1933 0.329261 CATGGGTTGAGGGAGAAGCA 59.671 55.000 0.00 0.00 0.00 3.91
645 1934 0.622665 ATGGGTTGAGGGAGAAGCAG 59.377 55.000 0.00 0.00 0.00 4.24
646 1935 1.301293 GGGTTGAGGGAGAAGCAGG 59.699 63.158 0.00 0.00 0.00 4.85
647 1936 1.201429 GGGTTGAGGGAGAAGCAGGA 61.201 60.000 0.00 0.00 0.00 3.86
648 1937 0.251634 GGTTGAGGGAGAAGCAGGAG 59.748 60.000 0.00 0.00 0.00 3.69
649 1938 0.392327 GTTGAGGGAGAAGCAGGAGC 60.392 60.000 0.00 0.00 42.56 4.70
720 2017 2.625737 CTGTCGCACTCTCATTTCCAT 58.374 47.619 0.00 0.00 0.00 3.41
721 2018 3.430790 CCTGTCGCACTCTCATTTCCATA 60.431 47.826 0.00 0.00 0.00 2.74
729 2026 6.183360 CGCACTCTCATTTCCATAGTCAAATT 60.183 38.462 0.00 0.00 0.00 1.82
737 2034 3.881220 TCCATAGTCAAATTTCCCCGAC 58.119 45.455 0.00 0.00 0.00 4.79
759 2057 3.002348 CGGAGACTTCAAAACTCAACACC 59.998 47.826 0.00 0.00 33.00 4.16
760 2058 4.200092 GGAGACTTCAAAACTCAACACCT 58.800 43.478 0.00 0.00 33.00 4.00
761 2059 5.365619 GGAGACTTCAAAACTCAACACCTA 58.634 41.667 0.00 0.00 33.00 3.08
762 2060 5.467063 GGAGACTTCAAAACTCAACACCTAG 59.533 44.000 0.00 0.00 33.00 3.02
776 2078 4.730949 ACACCTAGCTAGCAACGAATTA 57.269 40.909 18.83 0.00 0.00 1.40
795 2097 1.538047 ATTCCTTGCGCAGACACATT 58.462 45.000 11.31 0.00 0.00 2.71
808 2111 3.361053 CAGACACATTTACTCGTCACGTC 59.639 47.826 0.00 0.00 0.00 4.34
864 2167 2.812358 TGTTCACGCAGACACATACT 57.188 45.000 0.00 0.00 0.00 2.12
865 2168 2.672714 TGTTCACGCAGACACATACTC 58.327 47.619 0.00 0.00 0.00 2.59
926 2331 5.185056 CGGAAGAAAAATCCCCAACTACAAT 59.815 40.000 0.00 0.00 33.13 2.71
992 2397 8.891720 ACTATGTAGTAGTAGTTTCCTTCTTCG 58.108 37.037 0.00 0.00 41.84 3.79
1035 2440 0.729140 CGCCGTGCATTCCAGTTTTC 60.729 55.000 0.00 0.00 0.00 2.29
1051 2456 4.153117 CAGTTTTCATCCTCCTGTTCTTCG 59.847 45.833 0.00 0.00 0.00 3.79
1255 2660 1.520787 AACCGCGACGATCCAATCC 60.521 57.895 8.23 0.00 0.00 3.01
1311 2716 0.883370 GTTCCGACCTGGTGTTGTCC 60.883 60.000 2.82 0.00 39.52 4.02
1439 2844 2.161855 TGACACATCCATTTGGCAGAC 58.838 47.619 0.00 0.00 34.44 3.51
1743 3165 2.743636 TTAGAGTTTCTGGTGCCTCG 57.256 50.000 0.00 0.00 0.00 4.63
1914 3360 0.981183 TCCCGACATGTAGTTGCCTT 59.019 50.000 0.00 0.00 0.00 4.35
1971 3418 3.804873 GCGGATGTAGAAGAATCCAAGAC 59.195 47.826 2.85 0.00 42.21 3.01
2058 3508 1.261619 CGTGTCCACAACAGAAGCTTC 59.738 52.381 19.11 19.11 38.97 3.86
2349 3858 8.982685 CAGTATAGCAGTAATGGACAAATACTG 58.017 37.037 17.39 17.39 45.87 2.74
2441 3950 7.759489 ATGCAACATTAGACCTCTTTTTACA 57.241 32.000 0.00 0.00 0.00 2.41
2469 3978 4.345547 GCCTAGCAGTAATTCTAGAGGGTT 59.654 45.833 0.00 0.00 35.48 4.11
2470 3979 5.539193 GCCTAGCAGTAATTCTAGAGGGTTA 59.461 44.000 0.00 0.00 35.48 2.85
2471 3980 6.211785 GCCTAGCAGTAATTCTAGAGGGTTAT 59.788 42.308 0.00 0.00 35.48 1.89
2472 3981 7.607250 CCTAGCAGTAATTCTAGAGGGTTATG 58.393 42.308 0.00 0.00 35.48 1.90
2671 4223 8.134895 TGCAAATACAAAGGTAGACTGAAAAAG 58.865 33.333 0.00 0.00 31.88 2.27
2752 4332 0.037326 TAGCAGGCACACGGAAGAAG 60.037 55.000 0.00 0.00 0.00 2.85
2753 4333 1.301716 GCAGGCACACGGAAGAAGA 60.302 57.895 0.00 0.00 0.00 2.87
2754 4334 0.884704 GCAGGCACACGGAAGAAGAA 60.885 55.000 0.00 0.00 0.00 2.52
2755 4335 1.151668 CAGGCACACGGAAGAAGAAG 58.848 55.000 0.00 0.00 0.00 2.85
2756 4336 0.035458 AGGCACACGGAAGAAGAAGG 59.965 55.000 0.00 0.00 0.00 3.46
2757 4337 0.034896 GGCACACGGAAGAAGAAGGA 59.965 55.000 0.00 0.00 0.00 3.36
2758 4338 1.542547 GGCACACGGAAGAAGAAGGAA 60.543 52.381 0.00 0.00 0.00 3.36
2759 4339 2.218603 GCACACGGAAGAAGAAGGAAA 58.781 47.619 0.00 0.00 0.00 3.13
2760 4340 2.814336 GCACACGGAAGAAGAAGGAAAT 59.186 45.455 0.00 0.00 0.00 2.17
2761 4341 4.000988 GCACACGGAAGAAGAAGGAAATA 58.999 43.478 0.00 0.00 0.00 1.40
2762 4342 4.142881 GCACACGGAAGAAGAAGGAAATAC 60.143 45.833 0.00 0.00 0.00 1.89
2763 4343 4.994852 CACACGGAAGAAGAAGGAAATACA 59.005 41.667 0.00 0.00 0.00 2.29
2764 4344 4.995487 ACACGGAAGAAGAAGGAAATACAC 59.005 41.667 0.00 0.00 0.00 2.90
2765 4345 4.994852 CACGGAAGAAGAAGGAAATACACA 59.005 41.667 0.00 0.00 0.00 3.72
2766 4346 5.468746 CACGGAAGAAGAAGGAAATACACAA 59.531 40.000 0.00 0.00 0.00 3.33
2948 4661 0.251077 AAGCCTTGCCTCCTCAGTTG 60.251 55.000 0.00 0.00 0.00 3.16
3278 5001 8.072567 GGTATGTTCAAACTTCTGATGCATATC 58.927 37.037 0.00 0.00 31.84 1.63
3366 5094 2.592194 TCGCAGACGATACAAGACAAC 58.408 47.619 0.00 0.00 45.12 3.32
3496 5224 5.263599 ACCAAGCAACATCTTGATGGATTA 58.736 37.500 14.18 0.00 44.61 1.75
3636 5366 7.201652 GCTATGTCTCAAGGTTCCAATTTCTAC 60.202 40.741 0.00 0.00 0.00 2.59
3929 5662 0.252696 TAGGCATGGAGACTGTGGGT 60.253 55.000 0.00 0.00 35.25 4.51
4323 6071 1.915141 AGGCTGTGAATTGGGAACTG 58.085 50.000 0.00 0.00 0.00 3.16
4359 6107 6.707290 AGGCACTGTATCAGTATGTTAACAA 58.293 36.000 13.23 0.00 43.43 2.83
4380 6128 7.395190 ACAACTTAAATTGCAGCAGATATCA 57.605 32.000 5.32 0.00 32.47 2.15
4409 6165 4.133820 TGAACAAATCACCTGGTACACTG 58.866 43.478 0.00 0.00 31.50 3.66
4431 6187 6.094325 ACTGGTCTCTTTCTACATCTAACTCG 59.906 42.308 0.00 0.00 0.00 4.18
4449 6205 5.713792 ACTCGGACTATCATTGTAGATGG 57.286 43.478 0.00 0.00 33.25 3.51
4466 6222 8.484214 TGTAGATGGAGACTATTTGCTTATCT 57.516 34.615 0.00 0.00 0.00 1.98
4516 6272 9.492973 CCTAAAAGTTCCACAAATCAATCAAAT 57.507 29.630 0.00 0.00 0.00 2.32
4549 6342 8.454106 CACTATTATTAAGCTGCACTTTTGTCT 58.546 33.333 1.02 0.00 39.97 3.41
4551 6344 3.354089 TTAAGCTGCACTTTTGTCTGC 57.646 42.857 1.02 0.00 39.97 4.26
4575 6368 5.939764 TGACAGATACATGCCTTTAGTCT 57.060 39.130 0.00 0.00 0.00 3.24
4588 6381 8.892723 CATGCCTTTAGTCTTGTATTATGAACA 58.107 33.333 0.00 0.00 0.00 3.18
4620 6413 6.601613 TGTCTTTACCCATATGAATGTTGGTC 59.398 38.462 3.65 0.00 32.07 4.02
4626 6419 5.103728 ACCCATATGAATGTTGGTCATGGTA 60.104 40.000 3.65 0.00 36.41 3.25
4629 6422 7.015487 CCCATATGAATGTTGGTCATGGTAAAT 59.985 37.037 3.65 0.00 36.41 1.40
4630 6423 7.868922 CCATATGAATGTTGGTCATGGTAAATG 59.131 37.037 3.65 0.00 36.41 2.32
4646 6439 9.066892 CATGGTAAATGTAACCTGCTACATAAT 57.933 33.333 0.00 0.00 40.79 1.28
4669 6462 4.279169 TCTCCTTGTTGCCTTGATTTTGAG 59.721 41.667 0.00 0.00 0.00 3.02
4672 6466 5.104982 TCCTTGTTGCCTTGATTTTGAGTTT 60.105 36.000 0.00 0.00 0.00 2.66
4688 6482 8.870160 TTTTGAGTTTTTGACATGTATTCCTG 57.130 30.769 0.00 0.00 0.00 3.86
4690 6484 8.408043 TTGAGTTTTTGACATGTATTCCTGAT 57.592 30.769 0.00 0.00 0.00 2.90
4696 6490 3.202818 TGACATGTATTCCTGATGCCCTT 59.797 43.478 0.00 0.00 0.00 3.95
4697 6491 4.210331 GACATGTATTCCTGATGCCCTTT 58.790 43.478 0.00 0.00 0.00 3.11
4698 6492 4.613437 ACATGTATTCCTGATGCCCTTTT 58.387 39.130 0.00 0.00 0.00 2.27
4699 6493 5.025453 ACATGTATTCCTGATGCCCTTTTT 58.975 37.500 0.00 0.00 0.00 1.94
4732 6526 7.497925 AAAGAAGGTACTGTTTTCACATCTC 57.502 36.000 0.00 0.00 40.86 2.75
4733 6527 5.552178 AGAAGGTACTGTTTTCACATCTCC 58.448 41.667 0.00 0.00 40.86 3.71
4734 6528 5.308237 AGAAGGTACTGTTTTCACATCTCCT 59.692 40.000 0.00 0.00 40.86 3.69
4735 6529 6.497259 AGAAGGTACTGTTTTCACATCTCCTA 59.503 38.462 0.00 0.00 40.86 2.94
4736 6530 6.875972 AGGTACTGTTTTCACATCTCCTAT 57.124 37.500 0.00 0.00 37.18 2.57
4737 6531 7.973048 AGGTACTGTTTTCACATCTCCTATA 57.027 36.000 0.00 0.00 37.18 1.31
4738 6532 8.554490 AGGTACTGTTTTCACATCTCCTATAT 57.446 34.615 0.00 0.00 37.18 0.86
4739 6533 8.643324 AGGTACTGTTTTCACATCTCCTATATC 58.357 37.037 0.00 0.00 37.18 1.63
4740 6534 8.421784 GGTACTGTTTTCACATCTCCTATATCA 58.578 37.037 0.00 0.00 30.39 2.15
4741 6535 9.250624 GTACTGTTTTCACATCTCCTATATCAC 57.749 37.037 0.00 0.00 30.39 3.06
4742 6536 8.083828 ACTGTTTTCACATCTCCTATATCACT 57.916 34.615 0.00 0.00 30.39 3.41
4743 6537 9.201989 ACTGTTTTCACATCTCCTATATCACTA 57.798 33.333 0.00 0.00 30.39 2.74
4745 6539 9.817809 TGTTTTCACATCTCCTATATCACTAAC 57.182 33.333 0.00 0.00 0.00 2.34
4746 6540 9.817809 GTTTTCACATCTCCTATATCACTAACA 57.182 33.333 0.00 0.00 0.00 2.41
4748 6542 9.817809 TTTCACATCTCCTATATCACTAACAAC 57.182 33.333 0.00 0.00 0.00 3.32
4749 6543 8.533569 TCACATCTCCTATATCACTAACAACA 57.466 34.615 0.00 0.00 0.00 3.33
4750 6544 8.414003 TCACATCTCCTATATCACTAACAACAC 58.586 37.037 0.00 0.00 0.00 3.32
4751 6545 7.379797 CACATCTCCTATATCACTAACAACACG 59.620 40.741 0.00 0.00 0.00 4.49
4752 6546 7.068348 ACATCTCCTATATCACTAACAACACGT 59.932 37.037 0.00 0.00 0.00 4.49
4753 6547 7.400599 TCTCCTATATCACTAACAACACGTT 57.599 36.000 0.00 0.00 41.91 3.99
4754 6548 7.833786 TCTCCTATATCACTAACAACACGTTT 58.166 34.615 0.00 0.00 39.14 3.60
4755 6549 7.758076 TCTCCTATATCACTAACAACACGTTTG 59.242 37.037 8.35 8.35 39.14 2.93
4756 6550 6.814644 TCCTATATCACTAACAACACGTTTGG 59.185 38.462 12.79 0.00 39.14 3.28
4757 6551 3.619233 ATCACTAACAACACGTTTGGC 57.381 42.857 12.79 0.00 39.14 4.52
4758 6552 2.634600 TCACTAACAACACGTTTGGCT 58.365 42.857 12.79 4.84 39.14 4.75
4759 6553 2.610374 TCACTAACAACACGTTTGGCTC 59.390 45.455 12.79 0.00 39.14 4.70
4760 6554 1.944709 ACTAACAACACGTTTGGCTCC 59.055 47.619 12.79 0.00 39.14 4.70
4761 6555 2.218603 CTAACAACACGTTTGGCTCCT 58.781 47.619 12.79 0.00 39.14 3.69
4762 6556 0.738389 AACAACACGTTTGGCTCCTG 59.262 50.000 12.79 0.00 32.35 3.86
4763 6557 0.393808 ACAACACGTTTGGCTCCTGT 60.394 50.000 12.79 0.00 0.00 4.00
4764 6558 0.307760 CAACACGTTTGGCTCCTGTC 59.692 55.000 0.00 0.00 0.00 3.51
4765 6559 0.107410 AACACGTTTGGCTCCTGTCA 60.107 50.000 0.00 0.00 0.00 3.58
4766 6560 0.108585 ACACGTTTGGCTCCTGTCAT 59.891 50.000 0.00 0.00 0.00 3.06
4767 6561 1.238439 CACGTTTGGCTCCTGTCATT 58.762 50.000 0.00 0.00 0.00 2.57
4768 6562 1.608590 CACGTTTGGCTCCTGTCATTT 59.391 47.619 0.00 0.00 0.00 2.32
4769 6563 1.608590 ACGTTTGGCTCCTGTCATTTG 59.391 47.619 0.00 0.00 0.00 2.32
4770 6564 1.879380 CGTTTGGCTCCTGTCATTTGA 59.121 47.619 0.00 0.00 0.00 2.69
4771 6565 2.350772 CGTTTGGCTCCTGTCATTTGAC 60.351 50.000 3.72 3.72 44.97 3.18
4772 6566 2.887152 GTTTGGCTCCTGTCATTTGACT 59.113 45.455 11.67 0.00 44.99 3.41
4773 6567 2.479566 TGGCTCCTGTCATTTGACTC 57.520 50.000 11.67 0.00 44.99 3.36
4774 6568 1.338105 TGGCTCCTGTCATTTGACTCG 60.338 52.381 11.67 3.58 44.99 4.18
4775 6569 1.363744 GCTCCTGTCATTTGACTCGG 58.636 55.000 11.67 11.37 44.99 4.63
4776 6570 1.066858 GCTCCTGTCATTTGACTCGGA 60.067 52.381 11.67 14.33 44.99 4.55
4777 6571 2.612972 GCTCCTGTCATTTGACTCGGAA 60.613 50.000 17.10 7.24 44.99 4.30
4778 6572 3.866651 CTCCTGTCATTTGACTCGGAAT 58.133 45.455 17.10 0.00 44.99 3.01
4779 6573 4.256920 CTCCTGTCATTTGACTCGGAATT 58.743 43.478 17.10 0.00 44.99 2.17
4780 6574 4.253685 TCCTGTCATTTGACTCGGAATTC 58.746 43.478 15.29 0.00 44.99 2.17
4781 6575 3.375299 CCTGTCATTTGACTCGGAATTCC 59.625 47.826 15.01 15.01 44.99 3.01
4782 6576 3.658351 GTCATTTGACTCGGAATTCCG 57.342 47.619 35.95 35.95 46.80 4.30
4794 6588 3.345508 GGAATTCCGACCCTAACTTGT 57.654 47.619 9.17 0.00 0.00 3.16
4795 6589 3.682696 GGAATTCCGACCCTAACTTGTT 58.317 45.455 9.17 0.00 0.00 2.83
4796 6590 4.077108 GGAATTCCGACCCTAACTTGTTT 58.923 43.478 9.17 0.00 0.00 2.83
4797 6591 4.082949 GGAATTCCGACCCTAACTTGTTTG 60.083 45.833 9.17 0.00 0.00 2.93
4798 6592 2.554370 TCCGACCCTAACTTGTTTGG 57.446 50.000 6.94 6.94 0.00 3.28
4799 6593 0.879090 CCGACCCTAACTTGTTTGGC 59.121 55.000 8.16 0.00 0.00 4.52
4800 6594 1.544759 CCGACCCTAACTTGTTTGGCT 60.545 52.381 8.16 0.00 0.00 4.75
4801 6595 1.535462 CGACCCTAACTTGTTTGGCTG 59.465 52.381 8.16 0.22 0.00 4.85
4802 6596 1.269723 GACCCTAACTTGTTTGGCTGC 59.730 52.381 8.16 0.00 0.00 5.25
4803 6597 0.603065 CCCTAACTTGTTTGGCTGCC 59.397 55.000 12.87 12.87 0.00 4.85
4804 6598 1.327303 CCTAACTTGTTTGGCTGCCA 58.673 50.000 19.30 19.30 0.00 4.92
4805 6599 1.895131 CCTAACTTGTTTGGCTGCCAT 59.105 47.619 24.03 8.15 31.53 4.40
4806 6600 2.353011 CCTAACTTGTTTGGCTGCCATG 60.353 50.000 24.03 12.53 31.53 3.66
4807 6601 0.393820 AACTTGTTTGGCTGCCATGG 59.606 50.000 24.03 7.63 31.53 3.66
4808 6602 0.469705 ACTTGTTTGGCTGCCATGGA 60.470 50.000 24.03 4.52 31.53 3.41
4809 6603 0.899720 CTTGTTTGGCTGCCATGGAT 59.100 50.000 24.03 0.00 31.53 3.41
4810 6604 1.276989 CTTGTTTGGCTGCCATGGATT 59.723 47.619 24.03 0.00 31.53 3.01
4811 6605 1.350071 TGTTTGGCTGCCATGGATTT 58.650 45.000 24.03 0.00 31.53 2.17
4812 6606 2.533916 TGTTTGGCTGCCATGGATTTA 58.466 42.857 24.03 1.89 31.53 1.40
4813 6607 2.496871 TGTTTGGCTGCCATGGATTTAG 59.503 45.455 24.03 8.60 31.53 1.85
4814 6608 2.760092 GTTTGGCTGCCATGGATTTAGA 59.240 45.455 24.03 0.16 31.53 2.10
4815 6609 2.057137 TGGCTGCCATGGATTTAGAC 57.943 50.000 19.30 10.21 0.00 2.59
4816 6610 1.284491 TGGCTGCCATGGATTTAGACA 59.716 47.619 19.30 12.86 0.00 3.41
4817 6611 1.678101 GGCTGCCATGGATTTAGACAC 59.322 52.381 18.40 0.00 0.00 3.67
4818 6612 2.368439 GCTGCCATGGATTTAGACACA 58.632 47.619 18.40 0.00 0.00 3.72
4819 6613 2.357009 GCTGCCATGGATTTAGACACAG 59.643 50.000 18.40 10.79 0.00 3.66
4820 6614 2.947652 CTGCCATGGATTTAGACACAGG 59.052 50.000 18.40 0.00 0.00 4.00
4821 6615 2.575735 TGCCATGGATTTAGACACAGGA 59.424 45.455 18.40 0.00 0.00 3.86
4822 6616 3.202818 TGCCATGGATTTAGACACAGGAT 59.797 43.478 18.40 0.00 0.00 3.24
4823 6617 4.210331 GCCATGGATTTAGACACAGGATT 58.790 43.478 18.40 0.00 0.00 3.01
4824 6618 4.646492 GCCATGGATTTAGACACAGGATTT 59.354 41.667 18.40 0.00 0.00 2.17
4825 6619 5.221126 GCCATGGATTTAGACACAGGATTTC 60.221 44.000 18.40 0.00 0.00 2.17
4826 6620 5.887598 CCATGGATTTAGACACAGGATTTCA 59.112 40.000 5.56 0.00 0.00 2.69
4827 6621 6.548622 CCATGGATTTAGACACAGGATTTCAT 59.451 38.462 5.56 0.00 0.00 2.57
4828 6622 7.069085 CCATGGATTTAGACACAGGATTTCATT 59.931 37.037 5.56 0.00 0.00 2.57
4829 6623 8.472413 CATGGATTTAGACACAGGATTTCATTT 58.528 33.333 0.00 0.00 0.00 2.32
4830 6624 7.829725 TGGATTTAGACACAGGATTTCATTTG 58.170 34.615 0.00 0.00 0.00 2.32
5170 6964 4.478206 AAAGAAGATCCTCGAGCAATGA 57.522 40.909 6.99 0.00 0.00 2.57
5171 6965 4.478206 AAGAAGATCCTCGAGCAATGAA 57.522 40.909 6.99 0.00 0.00 2.57
5172 6966 4.478206 AGAAGATCCTCGAGCAATGAAA 57.522 40.909 6.99 0.00 0.00 2.69
5173 6967 4.836825 AGAAGATCCTCGAGCAATGAAAA 58.163 39.130 6.99 0.00 0.00 2.29
5174 6968 5.435291 AGAAGATCCTCGAGCAATGAAAAT 58.565 37.500 6.99 0.00 0.00 1.82
5175 6969 5.526846 AGAAGATCCTCGAGCAATGAAAATC 59.473 40.000 6.99 0.00 0.00 2.17
5176 6970 5.033589 AGATCCTCGAGCAATGAAAATCT 57.966 39.130 6.99 2.11 0.00 2.40
5177 6971 5.435291 AGATCCTCGAGCAATGAAAATCTT 58.565 37.500 6.99 0.00 0.00 2.40
5178 6972 5.884792 AGATCCTCGAGCAATGAAAATCTTT 59.115 36.000 6.99 0.00 0.00 2.52
5179 6973 5.551760 TCCTCGAGCAATGAAAATCTTTC 57.448 39.130 6.99 0.00 0.00 2.62
5180 6974 5.248640 TCCTCGAGCAATGAAAATCTTTCT 58.751 37.500 6.99 0.00 0.00 2.52
5181 6975 5.707298 TCCTCGAGCAATGAAAATCTTTCTT 59.293 36.000 6.99 0.00 0.00 2.52
5182 6976 5.798934 CCTCGAGCAATGAAAATCTTTCTTG 59.201 40.000 6.99 4.59 0.00 3.02
5183 6977 5.702865 TCGAGCAATGAAAATCTTTCTTGG 58.297 37.500 1.22 0.00 0.00 3.61
5184 6978 4.860907 CGAGCAATGAAAATCTTTCTTGGG 59.139 41.667 1.22 0.00 0.00 4.12
5185 6979 5.565439 CGAGCAATGAAAATCTTTCTTGGGT 60.565 40.000 1.22 0.00 0.00 4.51
5186 6980 5.544650 AGCAATGAAAATCTTTCTTGGGTG 58.455 37.500 1.22 0.00 0.00 4.61
5187 6981 4.692155 GCAATGAAAATCTTTCTTGGGTGG 59.308 41.667 1.22 0.00 0.00 4.61
5188 6982 5.742838 GCAATGAAAATCTTTCTTGGGTGGT 60.743 40.000 1.22 0.00 0.00 4.16
5189 6983 4.935352 TGAAAATCTTTCTTGGGTGGTG 57.065 40.909 1.22 0.00 0.00 4.17
5190 6984 3.069443 TGAAAATCTTTCTTGGGTGGTGC 59.931 43.478 1.22 0.00 0.00 5.01
5191 6985 2.683211 AATCTTTCTTGGGTGGTGCT 57.317 45.000 0.00 0.00 0.00 4.40
5192 6986 3.806949 AATCTTTCTTGGGTGGTGCTA 57.193 42.857 0.00 0.00 0.00 3.49
5193 6987 3.806949 ATCTTTCTTGGGTGGTGCTAA 57.193 42.857 0.00 0.00 0.00 3.09
5194 6988 3.806949 TCTTTCTTGGGTGGTGCTAAT 57.193 42.857 0.00 0.00 0.00 1.73
5195 6989 4.919774 TCTTTCTTGGGTGGTGCTAATA 57.080 40.909 0.00 0.00 0.00 0.98
5196 6990 5.249780 TCTTTCTTGGGTGGTGCTAATAA 57.750 39.130 0.00 0.00 0.00 1.40
5197 6991 5.826643 TCTTTCTTGGGTGGTGCTAATAAT 58.173 37.500 0.00 0.00 0.00 1.28
5198 6992 5.652014 TCTTTCTTGGGTGGTGCTAATAATG 59.348 40.000 0.00 0.00 0.00 1.90
5199 6993 3.287222 TCTTGGGTGGTGCTAATAATGC 58.713 45.455 0.00 0.00 0.00 3.56
5200 6994 2.816777 TGGGTGGTGCTAATAATGCA 57.183 45.000 0.00 0.00 38.19 3.96
5201 6995 3.093057 TGGGTGGTGCTAATAATGCAA 57.907 42.857 0.00 0.00 42.41 4.08
5202 6996 3.435275 TGGGTGGTGCTAATAATGCAAA 58.565 40.909 0.00 0.00 42.41 3.68
5203 6997 3.446873 TGGGTGGTGCTAATAATGCAAAG 59.553 43.478 0.00 0.00 42.41 2.77
5204 6998 3.181476 GGGTGGTGCTAATAATGCAAAGG 60.181 47.826 0.00 0.00 42.41 3.11
5205 6999 3.447229 GGTGGTGCTAATAATGCAAAGGT 59.553 43.478 0.00 0.00 42.41 3.50
5206 7000 4.081697 GGTGGTGCTAATAATGCAAAGGTT 60.082 41.667 0.00 0.00 42.41 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 9.566432 GTTTAGAATGAGACCAATCCTGAATAT 57.434 33.333 0.00 0.00 0.00 1.28
113 114 8.548025 TGTTTAGAATGAGACCAATCCTGAATA 58.452 33.333 0.00 0.00 0.00 1.75
114 115 7.405292 TGTTTAGAATGAGACCAATCCTGAAT 58.595 34.615 0.00 0.00 0.00 2.57
115 116 6.778821 TGTTTAGAATGAGACCAATCCTGAA 58.221 36.000 0.00 0.00 0.00 3.02
116 117 6.373005 TGTTTAGAATGAGACCAATCCTGA 57.627 37.500 0.00 0.00 0.00 3.86
117 118 7.052873 AGATGTTTAGAATGAGACCAATCCTG 58.947 38.462 0.00 0.00 0.00 3.86
118 119 7.205515 AGATGTTTAGAATGAGACCAATCCT 57.794 36.000 0.00 0.00 0.00 3.24
119 120 7.872113 AAGATGTTTAGAATGAGACCAATCC 57.128 36.000 0.00 0.00 0.00 3.01
121 122 9.911788 ACATAAGATGTTTAGAATGAGACCAAT 57.088 29.630 0.00 0.00 41.63 3.16
202 203 9.566432 TTTTGTTTACATTTTTAGATGGCCAAT 57.434 25.926 10.96 3.81 0.00 3.16
203 204 8.964476 TTTTGTTTACATTTTTAGATGGCCAA 57.036 26.923 10.96 0.00 0.00 4.52
204 205 8.964476 TTTTTGTTTACATTTTTAGATGGCCA 57.036 26.923 8.56 8.56 0.00 5.36
218 219 9.553064 AGTCCATGCATTTTATTTTTGTTTACA 57.447 25.926 0.00 0.00 0.00 2.41
221 222 8.901793 ACAAGTCCATGCATTTTATTTTTGTTT 58.098 25.926 0.00 0.00 0.00 2.83
222 223 8.449251 ACAAGTCCATGCATTTTATTTTTGTT 57.551 26.923 0.00 0.00 0.00 2.83
223 224 8.449251 AACAAGTCCATGCATTTTATTTTTGT 57.551 26.923 0.00 0.00 0.00 2.83
224 225 9.171701 CAAACAAGTCCATGCATTTTATTTTTG 57.828 29.630 0.00 0.00 0.00 2.44
225 226 9.118300 TCAAACAAGTCCATGCATTTTATTTTT 57.882 25.926 0.00 0.00 0.00 1.94
226 227 8.674263 TCAAACAAGTCCATGCATTTTATTTT 57.326 26.923 0.00 0.00 0.00 1.82
227 228 8.149647 TCTCAAACAAGTCCATGCATTTTATTT 58.850 29.630 0.00 0.00 0.00 1.40
228 229 7.669427 TCTCAAACAAGTCCATGCATTTTATT 58.331 30.769 0.00 0.00 0.00 1.40
229 230 7.177216 TCTCTCAAACAAGTCCATGCATTTTAT 59.823 33.333 0.00 0.00 0.00 1.40
230 231 6.489700 TCTCTCAAACAAGTCCATGCATTTTA 59.510 34.615 0.00 0.00 0.00 1.52
231 232 5.302568 TCTCTCAAACAAGTCCATGCATTTT 59.697 36.000 0.00 0.00 0.00 1.82
232 233 4.828939 TCTCTCAAACAAGTCCATGCATTT 59.171 37.500 0.00 0.00 0.00 2.32
233 234 4.401022 TCTCTCAAACAAGTCCATGCATT 58.599 39.130 0.00 0.00 0.00 3.56
234 235 4.008330 CTCTCTCAAACAAGTCCATGCAT 58.992 43.478 0.00 0.00 0.00 3.96
235 236 3.071457 TCTCTCTCAAACAAGTCCATGCA 59.929 43.478 0.00 0.00 0.00 3.96
236 237 3.668447 TCTCTCTCAAACAAGTCCATGC 58.332 45.455 0.00 0.00 0.00 4.06
237 238 4.020751 TCCTCTCTCTCAAACAAGTCCATG 60.021 45.833 0.00 0.00 0.00 3.66
238 239 4.163427 TCCTCTCTCTCAAACAAGTCCAT 58.837 43.478 0.00 0.00 0.00 3.41
239 240 3.576118 CTCCTCTCTCTCAAACAAGTCCA 59.424 47.826 0.00 0.00 0.00 4.02
240 241 3.829601 TCTCCTCTCTCTCAAACAAGTCC 59.170 47.826 0.00 0.00 0.00 3.85
241 242 4.764823 TCTCTCCTCTCTCTCAAACAAGTC 59.235 45.833 0.00 0.00 0.00 3.01
242 243 4.735369 TCTCTCCTCTCTCTCAAACAAGT 58.265 43.478 0.00 0.00 0.00 3.16
243 244 5.653507 CATCTCTCCTCTCTCTCAAACAAG 58.346 45.833 0.00 0.00 0.00 3.16
244 245 4.081752 GCATCTCTCCTCTCTCTCAAACAA 60.082 45.833 0.00 0.00 0.00 2.83
245 246 3.446873 GCATCTCTCCTCTCTCTCAAACA 59.553 47.826 0.00 0.00 0.00 2.83
246 247 3.701040 AGCATCTCTCCTCTCTCTCAAAC 59.299 47.826 0.00 0.00 0.00 2.93
247 248 3.953612 GAGCATCTCTCCTCTCTCTCAAA 59.046 47.826 0.00 0.00 35.77 2.69
248 249 3.554934 GAGCATCTCTCCTCTCTCTCAA 58.445 50.000 0.00 0.00 35.77 3.02
249 250 3.213206 GAGCATCTCTCCTCTCTCTCA 57.787 52.381 0.00 0.00 35.77 3.27
266 267 0.236711 GATGTACGCATGCATGGAGC 59.763 55.000 27.34 12.88 45.96 4.70
267 268 1.797046 GAGATGTACGCATGCATGGAG 59.203 52.381 27.34 12.64 35.07 3.86
268 269 1.138661 TGAGATGTACGCATGCATGGA 59.861 47.619 27.34 0.00 35.07 3.41
269 270 1.262417 GTGAGATGTACGCATGCATGG 59.738 52.381 27.34 19.00 35.07 3.66
270 271 2.033151 CAGTGAGATGTACGCATGCATG 60.033 50.000 22.70 22.70 35.07 4.06
271 272 2.207590 CAGTGAGATGTACGCATGCAT 58.792 47.619 19.57 4.54 35.07 3.96
272 273 1.066929 ACAGTGAGATGTACGCATGCA 60.067 47.619 19.57 0.00 35.07 3.96
273 274 1.645034 ACAGTGAGATGTACGCATGC 58.355 50.000 7.91 7.91 35.07 4.06
274 275 5.778161 TTTTACAGTGAGATGTACGCATG 57.222 39.130 0.00 0.00 35.44 4.06
275 276 5.932303 ACTTTTTACAGTGAGATGTACGCAT 59.068 36.000 0.00 0.00 35.44 4.73
276 277 5.294356 ACTTTTTACAGTGAGATGTACGCA 58.706 37.500 0.00 0.00 35.44 5.24
277 278 5.840940 ACTTTTTACAGTGAGATGTACGC 57.159 39.130 0.00 0.00 35.44 4.42
278 279 7.410513 GCAGTACTTTTTACAGTGAGATGTACG 60.411 40.741 0.00 0.00 35.44 3.67
279 280 7.148623 GGCAGTACTTTTTACAGTGAGATGTAC 60.149 40.741 0.00 2.92 35.44 2.90
280 281 6.872020 GGCAGTACTTTTTACAGTGAGATGTA 59.128 38.462 0.00 0.00 34.56 2.29
281 282 5.701290 GGCAGTACTTTTTACAGTGAGATGT 59.299 40.000 0.00 0.00 37.19 3.06
282 283 5.700832 TGGCAGTACTTTTTACAGTGAGATG 59.299 40.000 0.00 0.00 0.00 2.90
283 284 5.701290 GTGGCAGTACTTTTTACAGTGAGAT 59.299 40.000 0.00 0.00 0.00 2.75
284 285 5.054477 GTGGCAGTACTTTTTACAGTGAGA 58.946 41.667 0.00 0.00 0.00 3.27
285 286 5.057149 AGTGGCAGTACTTTTTACAGTGAG 58.943 41.667 0.00 0.00 0.00 3.51
286 287 5.031066 AGTGGCAGTACTTTTTACAGTGA 57.969 39.130 0.00 0.00 0.00 3.41
287 288 4.213482 GGAGTGGCAGTACTTTTTACAGTG 59.787 45.833 0.00 0.00 0.00 3.66
288 289 4.102681 AGGAGTGGCAGTACTTTTTACAGT 59.897 41.667 0.00 0.00 0.00 3.55
289 290 4.452455 CAGGAGTGGCAGTACTTTTTACAG 59.548 45.833 3.71 0.00 0.00 2.74
290 291 4.101898 TCAGGAGTGGCAGTACTTTTTACA 59.898 41.667 3.71 0.00 0.00 2.41
291 292 4.451435 GTCAGGAGTGGCAGTACTTTTTAC 59.549 45.833 3.71 0.00 0.00 2.01
292 293 4.101898 TGTCAGGAGTGGCAGTACTTTTTA 59.898 41.667 3.71 0.00 31.64 1.52
293 294 3.118038 TGTCAGGAGTGGCAGTACTTTTT 60.118 43.478 3.71 0.00 31.64 1.94
294 295 2.438021 TGTCAGGAGTGGCAGTACTTTT 59.562 45.455 3.71 0.00 31.64 2.27
295 296 2.047061 TGTCAGGAGTGGCAGTACTTT 58.953 47.619 3.71 0.00 31.64 2.66
296 297 1.717032 TGTCAGGAGTGGCAGTACTT 58.283 50.000 3.71 0.00 31.64 2.24
297 298 1.552337 CATGTCAGGAGTGGCAGTACT 59.448 52.381 0.00 0.00 43.01 2.73
298 299 1.406069 CCATGTCAGGAGTGGCAGTAC 60.406 57.143 0.00 0.00 43.01 2.73
299 300 0.904649 CCATGTCAGGAGTGGCAGTA 59.095 55.000 0.00 0.00 43.01 2.74
300 301 1.681666 CCATGTCAGGAGTGGCAGT 59.318 57.895 0.00 0.00 43.01 4.40
301 302 1.077930 CCCATGTCAGGAGTGGCAG 60.078 63.158 0.00 0.00 43.01 4.85
302 303 3.080641 CCCATGTCAGGAGTGGCA 58.919 61.111 0.00 0.00 44.18 4.92
303 304 2.439156 GCCCATGTCAGGAGTGGC 60.439 66.667 0.00 0.00 0.00 5.01
304 305 2.273449 GGCCCATGTCAGGAGTGG 59.727 66.667 0.00 0.00 0.00 4.00
305 306 0.982852 TAGGGCCCATGTCAGGAGTG 60.983 60.000 27.56 0.00 0.00 3.51
306 307 0.029681 ATAGGGCCCATGTCAGGAGT 60.030 55.000 27.56 0.25 0.00 3.85
307 308 1.143813 AATAGGGCCCATGTCAGGAG 58.856 55.000 27.56 0.00 0.00 3.69
308 309 2.505672 TAATAGGGCCCATGTCAGGA 57.494 50.000 27.56 0.00 0.00 3.86
309 310 3.331889 AGATTAATAGGGCCCATGTCAGG 59.668 47.826 27.56 0.00 0.00 3.86
310 311 4.042062 TGAGATTAATAGGGCCCATGTCAG 59.958 45.833 27.56 0.00 0.00 3.51
311 312 3.980022 TGAGATTAATAGGGCCCATGTCA 59.020 43.478 27.56 19.09 0.00 3.58
312 313 4.202461 TGTGAGATTAATAGGGCCCATGTC 60.202 45.833 27.56 16.55 0.00 3.06
313 314 3.721575 TGTGAGATTAATAGGGCCCATGT 59.278 43.478 27.56 10.75 0.00 3.21
314 315 4.371624 TGTGAGATTAATAGGGCCCATG 57.628 45.455 27.56 0.00 0.00 3.66
315 316 5.074929 TCAATGTGAGATTAATAGGGCCCAT 59.925 40.000 27.56 12.99 0.00 4.00
316 317 4.415179 TCAATGTGAGATTAATAGGGCCCA 59.585 41.667 27.56 10.89 0.00 5.36
317 318 4.985538 TCAATGTGAGATTAATAGGGCCC 58.014 43.478 16.46 16.46 0.00 5.80
318 319 7.231317 TCAAATCAATGTGAGATTAATAGGGCC 59.769 37.037 0.00 0.00 34.78 5.80
319 320 8.078596 GTCAAATCAATGTGAGATTAATAGGGC 58.921 37.037 0.00 0.00 34.78 5.19
320 321 9.347240 AGTCAAATCAATGTGAGATTAATAGGG 57.653 33.333 0.00 0.00 34.78 3.53
371 372 9.578576 GGCCCATTCATATGTATAATCATGTAT 57.421 33.333 1.90 0.00 0.00 2.29
372 373 7.998383 GGGCCCATTCATATGTATAATCATGTA 59.002 37.037 19.95 0.00 0.00 2.29
373 374 6.835488 GGGCCCATTCATATGTATAATCATGT 59.165 38.462 19.95 0.00 0.00 3.21
374 375 6.016860 CGGGCCCATTCATATGTATAATCATG 60.017 42.308 24.92 0.00 0.00 3.07
375 376 6.064060 CGGGCCCATTCATATGTATAATCAT 58.936 40.000 24.92 0.00 0.00 2.45
376 377 5.436175 CGGGCCCATTCATATGTATAATCA 58.564 41.667 24.92 0.00 0.00 2.57
377 378 4.821805 CCGGGCCCATTCATATGTATAATC 59.178 45.833 24.92 0.00 0.00 1.75
378 379 4.792068 CCGGGCCCATTCATATGTATAAT 58.208 43.478 24.92 0.00 0.00 1.28
379 380 3.623703 GCCGGGCCCATTCATATGTATAA 60.624 47.826 24.92 0.00 0.00 0.98
380 381 2.092646 GCCGGGCCCATTCATATGTATA 60.093 50.000 24.92 0.00 0.00 1.47
381 382 1.340991 GCCGGGCCCATTCATATGTAT 60.341 52.381 24.92 0.00 0.00 2.29
382 383 0.037590 GCCGGGCCCATTCATATGTA 59.962 55.000 24.92 0.00 0.00 2.29
383 384 1.228552 GCCGGGCCCATTCATATGT 60.229 57.895 24.92 0.00 0.00 2.29
384 385 0.540365 AAGCCGGGCCCATTCATATG 60.540 55.000 24.92 1.64 0.00 1.78
385 386 1.072266 TAAGCCGGGCCCATTCATAT 58.928 50.000 24.92 2.92 0.00 1.78
386 387 0.847373 TTAAGCCGGGCCCATTCATA 59.153 50.000 24.92 4.80 0.00 2.15
387 388 0.032615 TTTAAGCCGGGCCCATTCAT 60.033 50.000 24.92 5.91 0.00 2.57
388 389 0.251832 TTTTAAGCCGGGCCCATTCA 60.252 50.000 24.92 1.50 0.00 2.57
389 390 0.174845 GTTTTAAGCCGGGCCCATTC 59.825 55.000 24.92 9.90 0.00 2.67
390 391 0.543174 TGTTTTAAGCCGGGCCCATT 60.543 50.000 24.92 15.72 0.00 3.16
391 392 1.077625 TGTTTTAAGCCGGGCCCAT 59.922 52.632 24.92 7.13 0.00 4.00
392 393 1.904378 GTGTTTTAAGCCGGGCCCA 60.904 57.895 24.92 0.00 0.00 5.36
393 394 1.254975 ATGTGTTTTAAGCCGGGCCC 61.255 55.000 17.02 13.57 0.00 5.80
394 395 0.172578 GATGTGTTTTAAGCCGGGCC 59.827 55.000 17.02 0.00 0.00 5.80
395 396 0.885196 TGATGTGTTTTAAGCCGGGC 59.115 50.000 12.11 12.11 0.00 6.13
396 397 1.883275 TGTGATGTGTTTTAAGCCGGG 59.117 47.619 2.18 0.00 0.00 5.73
397 398 3.634568 TTGTGATGTGTTTTAAGCCGG 57.365 42.857 0.00 0.00 0.00 6.13
398 399 3.425193 GCTTTGTGATGTGTTTTAAGCCG 59.575 43.478 0.00 0.00 32.52 5.52
399 400 4.445385 CAGCTTTGTGATGTGTTTTAAGCC 59.555 41.667 0.00 0.00 37.75 4.35
400 401 5.280945 TCAGCTTTGTGATGTGTTTTAAGC 58.719 37.500 0.00 0.00 37.40 3.09
401 402 6.075415 CGTTCAGCTTTGTGATGTGTTTTAAG 60.075 38.462 0.00 0.00 33.14 1.85
402 403 5.741510 CGTTCAGCTTTGTGATGTGTTTTAA 59.258 36.000 0.00 0.00 33.14 1.52
403 404 5.270083 CGTTCAGCTTTGTGATGTGTTTTA 58.730 37.500 0.00 0.00 33.14 1.52
404 405 4.104776 CGTTCAGCTTTGTGATGTGTTTT 58.895 39.130 0.00 0.00 33.14 2.43
405 406 3.489059 CCGTTCAGCTTTGTGATGTGTTT 60.489 43.478 0.00 0.00 33.14 2.83
406 407 2.033299 CCGTTCAGCTTTGTGATGTGTT 59.967 45.455 0.00 0.00 33.14 3.32
407 408 1.603802 CCGTTCAGCTTTGTGATGTGT 59.396 47.619 0.00 0.00 33.14 3.72
408 409 1.603802 ACCGTTCAGCTTTGTGATGTG 59.396 47.619 0.00 0.00 33.14 3.21
409 410 1.967319 ACCGTTCAGCTTTGTGATGT 58.033 45.000 0.00 0.00 33.14 3.06
410 411 3.325870 TCTACCGTTCAGCTTTGTGATG 58.674 45.455 0.00 0.00 0.00 3.07
411 412 3.678056 TCTACCGTTCAGCTTTGTGAT 57.322 42.857 0.00 0.00 0.00 3.06
412 413 3.325870 CATCTACCGTTCAGCTTTGTGA 58.674 45.455 0.00 0.00 0.00 3.58
413 414 2.416547 CCATCTACCGTTCAGCTTTGTG 59.583 50.000 0.00 0.00 0.00 3.33
414 415 2.038557 ACCATCTACCGTTCAGCTTTGT 59.961 45.455 0.00 0.00 0.00 2.83
415 416 2.699954 ACCATCTACCGTTCAGCTTTG 58.300 47.619 0.00 0.00 0.00 2.77
416 417 3.418684 AACCATCTACCGTTCAGCTTT 57.581 42.857 0.00 0.00 0.00 3.51
417 418 3.679083 GCTAACCATCTACCGTTCAGCTT 60.679 47.826 0.00 0.00 0.00 3.74
418 419 2.159085 GCTAACCATCTACCGTTCAGCT 60.159 50.000 0.00 0.00 0.00 4.24
419 420 2.202566 GCTAACCATCTACCGTTCAGC 58.797 52.381 0.00 0.00 0.00 4.26
420 421 2.798499 CGGCTAACCATCTACCGTTCAG 60.798 54.545 0.00 0.00 39.05 3.02
421 422 1.135527 CGGCTAACCATCTACCGTTCA 59.864 52.381 0.00 0.00 39.05 3.18
422 423 1.537562 CCGGCTAACCATCTACCGTTC 60.538 57.143 0.00 0.00 42.29 3.95
423 424 0.462789 CCGGCTAACCATCTACCGTT 59.537 55.000 0.00 0.00 42.29 4.44
424 425 0.685458 ACCGGCTAACCATCTACCGT 60.685 55.000 0.00 0.00 42.29 4.83
425 426 1.268899 CTACCGGCTAACCATCTACCG 59.731 57.143 0.00 0.00 43.44 4.02
426 427 1.000618 GCTACCGGCTAACCATCTACC 59.999 57.143 0.00 0.00 38.06 3.18
427 428 2.435533 GCTACCGGCTAACCATCTAC 57.564 55.000 0.00 0.00 38.06 2.59
439 440 4.162690 GGTGCTGGGAGCTACCGG 62.163 72.222 20.78 20.78 42.97 5.28
441 442 4.162690 CCGGTGCTGGGAGCTACC 62.163 72.222 8.55 8.55 42.97 3.18
442 443 1.610554 TTACCGGTGCTGGGAGCTAC 61.611 60.000 19.93 0.00 42.97 3.58
443 444 0.905809 TTTACCGGTGCTGGGAGCTA 60.906 55.000 19.93 0.00 42.97 3.32
444 445 1.774894 TTTTACCGGTGCTGGGAGCT 61.775 55.000 19.93 0.00 42.97 4.09
445 446 1.302993 TTTTACCGGTGCTGGGAGC 60.303 57.895 19.93 0.00 42.82 4.70
446 447 0.323629 TCTTTTACCGGTGCTGGGAG 59.676 55.000 19.93 6.62 0.00 4.30
447 448 0.323629 CTCTTTTACCGGTGCTGGGA 59.676 55.000 19.93 8.06 0.00 4.37
448 449 0.323629 TCTCTTTTACCGGTGCTGGG 59.676 55.000 19.93 4.73 0.00 4.45
449 450 1.002087 AGTCTCTTTTACCGGTGCTGG 59.998 52.381 19.93 5.20 0.00 4.85
450 451 2.457366 AGTCTCTTTTACCGGTGCTG 57.543 50.000 19.93 4.81 0.00 4.41
451 452 3.139077 CAAAGTCTCTTTTACCGGTGCT 58.861 45.455 19.93 0.00 0.00 4.40
452 453 2.350484 GCAAAGTCTCTTTTACCGGTGC 60.350 50.000 19.93 2.75 0.00 5.01
453 454 2.096417 CGCAAAGTCTCTTTTACCGGTG 60.096 50.000 19.93 0.00 0.00 4.94
454 455 2.140717 CGCAAAGTCTCTTTTACCGGT 58.859 47.619 13.98 13.98 0.00 5.28
455 456 1.463444 CCGCAAAGTCTCTTTTACCGG 59.537 52.381 0.00 0.00 32.01 5.28
456 457 1.463444 CCCGCAAAGTCTCTTTTACCG 59.537 52.381 0.00 0.00 0.00 4.02
457 458 1.810755 CCCCGCAAAGTCTCTTTTACC 59.189 52.381 0.00 0.00 0.00 2.85
458 459 1.199327 GCCCCGCAAAGTCTCTTTTAC 59.801 52.381 0.00 0.00 0.00 2.01
459 460 1.202830 TGCCCCGCAAAGTCTCTTTTA 60.203 47.619 0.00 0.00 34.76 1.52
460 461 0.467290 TGCCCCGCAAAGTCTCTTTT 60.467 50.000 0.00 0.00 34.76 2.27
461 462 1.150536 TGCCCCGCAAAGTCTCTTT 59.849 52.632 0.00 0.00 34.76 2.52
462 463 1.600916 GTGCCCCGCAAAGTCTCTT 60.601 57.895 0.00 0.00 41.47 2.85
463 464 2.032681 GTGCCCCGCAAAGTCTCT 59.967 61.111 0.00 0.00 41.47 3.10
464 465 3.423154 CGTGCCCCGCAAAGTCTC 61.423 66.667 0.00 0.00 41.47 3.36
465 466 2.748058 ATTCGTGCCCCGCAAAGTCT 62.748 55.000 0.00 0.00 41.47 3.24
466 467 2.332654 ATTCGTGCCCCGCAAAGTC 61.333 57.895 0.00 0.00 41.47 3.01
467 468 2.282180 ATTCGTGCCCCGCAAAGT 60.282 55.556 0.00 0.00 41.47 2.66
468 469 2.179018 CATTCGTGCCCCGCAAAG 59.821 61.111 0.00 0.00 41.47 2.77
469 470 3.369400 CCATTCGTGCCCCGCAAA 61.369 61.111 0.00 0.00 41.47 3.68
470 471 4.337177 TCCATTCGTGCCCCGCAA 62.337 61.111 0.00 0.00 41.47 4.85
471 472 4.776322 CTCCATTCGTGCCCCGCA 62.776 66.667 0.00 0.00 36.19 5.69
472 473 3.969250 TTCTCCATTCGTGCCCCGC 62.969 63.158 0.00 0.00 36.19 6.13
473 474 1.815421 CTTCTCCATTCGTGCCCCG 60.815 63.158 0.00 0.00 38.13 5.73
474 475 1.452108 CCTTCTCCATTCGTGCCCC 60.452 63.158 0.00 0.00 0.00 5.80
475 476 2.115291 GCCTTCTCCATTCGTGCCC 61.115 63.158 0.00 0.00 0.00 5.36
476 477 0.960364 TTGCCTTCTCCATTCGTGCC 60.960 55.000 0.00 0.00 0.00 5.01
477 478 0.881118 TTTGCCTTCTCCATTCGTGC 59.119 50.000 0.00 0.00 0.00 5.34
478 479 1.135972 CGTTTGCCTTCTCCATTCGTG 60.136 52.381 0.00 0.00 0.00 4.35
479 480 1.156736 CGTTTGCCTTCTCCATTCGT 58.843 50.000 0.00 0.00 0.00 3.85
492 493 1.666189 GGAATCTGAGCTACCGTTTGC 59.334 52.381 0.00 0.00 0.00 3.68
495 496 3.738281 CGATTGGAATCTGAGCTACCGTT 60.738 47.826 0.00 0.00 33.24 4.44
529 530 4.754667 GTCCCGGTGCCGTTCCTC 62.755 72.222 9.90 0.00 37.81 3.71
533 534 4.675029 CTTCGTCCCGGTGCCGTT 62.675 66.667 9.90 0.00 37.81 4.44
620 1909 0.995024 CTCCCTCAACCCATGAAGGT 59.005 55.000 0.00 0.00 40.13 3.50
621 1910 1.289160 TCTCCCTCAACCCATGAAGG 58.711 55.000 0.00 0.00 40.51 3.46
622 1911 2.943199 GCTTCTCCCTCAACCCATGAAG 60.943 54.545 0.00 0.00 37.67 3.02
623 1912 1.004745 GCTTCTCCCTCAACCCATGAA 59.995 52.381 0.00 0.00 37.67 2.57
624 1913 0.620556 GCTTCTCCCTCAACCCATGA 59.379 55.000 0.00 0.00 36.38 3.07
625 1914 0.329261 TGCTTCTCCCTCAACCCATG 59.671 55.000 0.00 0.00 0.00 3.66
626 1915 0.622665 CTGCTTCTCCCTCAACCCAT 59.377 55.000 0.00 0.00 0.00 4.00
627 1916 1.492133 CCTGCTTCTCCCTCAACCCA 61.492 60.000 0.00 0.00 0.00 4.51
628 1917 1.201429 TCCTGCTTCTCCCTCAACCC 61.201 60.000 0.00 0.00 0.00 4.11
629 1918 0.251634 CTCCTGCTTCTCCCTCAACC 59.748 60.000 0.00 0.00 0.00 3.77
630 1919 0.392327 GCTCCTGCTTCTCCCTCAAC 60.392 60.000 0.00 0.00 36.03 3.18
631 1920 1.986413 GCTCCTGCTTCTCCCTCAA 59.014 57.895 0.00 0.00 36.03 3.02
632 1921 3.719121 GCTCCTGCTTCTCCCTCA 58.281 61.111 0.00 0.00 36.03 3.86
663 1952 4.065281 CGTCGGGTGGAGGGTCAC 62.065 72.222 0.00 0.00 36.95 3.67
693 1989 0.670854 GAGAGTGCGACAGGGGAAAC 60.671 60.000 0.00 0.00 0.00 2.78
720 2017 1.901159 TCCGTCGGGGAAATTTGACTA 59.099 47.619 12.29 0.00 43.62 2.59
721 2018 0.688487 TCCGTCGGGGAAATTTGACT 59.312 50.000 12.29 0.00 43.62 3.41
729 2026 0.828762 TTGAAGTCTCCGTCGGGGAA 60.829 55.000 17.36 0.00 46.61 3.97
737 2034 3.002348 GGTGTTGAGTTTTGAAGTCTCCG 59.998 47.826 0.00 0.00 0.00 4.63
759 2057 6.882072 CAAGGAATAATTCGTTGCTAGCTAG 58.118 40.000 16.84 16.84 45.02 3.42
760 2058 6.844696 CAAGGAATAATTCGTTGCTAGCTA 57.155 37.500 17.23 5.31 45.02 3.32
761 2059 5.741388 CAAGGAATAATTCGTTGCTAGCT 57.259 39.130 17.23 0.00 45.02 3.32
776 2078 1.538047 AATGTGTCTGCGCAAGGAAT 58.462 45.000 13.05 0.00 38.73 3.01
795 2097 2.287644 TCTTCAACGACGTGACGAGTAA 59.712 45.455 13.70 3.00 37.03 2.24
832 2135 1.406447 GTGAACAAGTCCTCGACGAC 58.594 55.000 6.46 6.46 37.67 4.34
864 2167 2.029020 ACAATGCGAGCAAGAGTAGTGA 60.029 45.455 0.57 0.00 0.00 3.41
865 2168 2.341257 ACAATGCGAGCAAGAGTAGTG 58.659 47.619 0.57 0.00 0.00 2.74
926 2331 1.451504 CTGTTGCAGGGAGTGGACA 59.548 57.895 0.00 0.00 0.00 4.02
971 2376 5.947443 TGCGAAGAAGGAAACTACTACTAC 58.053 41.667 0.00 0.00 42.68 2.73
972 2377 5.125097 CCTGCGAAGAAGGAAACTACTACTA 59.875 44.000 0.00 0.00 42.68 1.82
973 2378 4.082136 CCTGCGAAGAAGGAAACTACTACT 60.082 45.833 0.00 0.00 42.68 2.57
992 2397 1.382692 GGCCTGCTTCATCTTCCTGC 61.383 60.000 0.00 0.00 0.00 4.85
1035 2440 2.232452 ACTGACGAAGAACAGGAGGATG 59.768 50.000 0.00 0.00 38.91 3.51
1051 2456 2.559440 GGATCTGCAGAATGGACTGAC 58.441 52.381 22.50 3.97 39.94 3.51
1085 2490 2.982744 GAGAGCGGTTTTGCAGGCC 61.983 63.158 0.00 0.00 37.31 5.19
1255 2660 3.680620 TTGGAGATGAAGCGGCGGG 62.681 63.158 9.78 0.00 0.00 6.13
1311 2716 0.038159 GAGTGTGACCTTGGGAGTCG 60.038 60.000 0.00 0.00 37.04 4.18
1743 3165 0.297820 GCGTAAGATGTGCGTACTGC 59.702 55.000 4.97 3.22 43.04 4.40
1991 3438 4.960469 TCCTAGGTAAGGTCACGAAATGAT 59.040 41.667 9.08 0.00 46.62 2.45
2058 3508 2.125952 TCAGTCATGCAGTCGCCG 60.126 61.111 0.00 0.00 37.32 6.46
2281 3790 7.526041 AGTAGATGCCCCATGATTAAATGTTA 58.474 34.615 0.00 0.00 0.00 2.41
2441 3950 7.038658 CCCTCTAGAATTACTGCTAGGCTTATT 60.039 40.741 0.00 0.00 35.83 1.40
2469 3978 9.027129 GTCGAATAAAAGTGCTACACATACATA 57.973 33.333 0.00 0.00 36.74 2.29
2470 3979 7.011109 GGTCGAATAAAAGTGCTACACATACAT 59.989 37.037 0.00 0.00 36.74 2.29
2471 3980 6.311935 GGTCGAATAAAAGTGCTACACATACA 59.688 38.462 0.00 0.00 36.74 2.29
2472 3981 6.238022 GGGTCGAATAAAAGTGCTACACATAC 60.238 42.308 0.00 0.00 36.74 2.39
2540 4091 7.697352 TTTGAACTGCAAAATGAATACTGTG 57.303 32.000 0.00 0.00 43.18 3.66
2671 4223 9.856488 GAAGTAGAATTTTGAAAATAAGGGTCC 57.144 33.333 3.26 0.00 0.00 4.46
2717 4270 9.456147 TGTGCCTGCTAAAGATTAATACTTTTA 57.544 29.630 14.14 7.96 38.34 1.52
2752 4332 4.258543 TCGGTCCATTGTGTATTTCCTTC 58.741 43.478 0.00 0.00 0.00 3.46
2753 4333 4.295141 TCGGTCCATTGTGTATTTCCTT 57.705 40.909 0.00 0.00 0.00 3.36
2754 4334 3.992943 TCGGTCCATTGTGTATTTCCT 57.007 42.857 0.00 0.00 0.00 3.36
2755 4335 3.243068 GCATCGGTCCATTGTGTATTTCC 60.243 47.826 0.00 0.00 0.00 3.13
2756 4336 3.627577 AGCATCGGTCCATTGTGTATTTC 59.372 43.478 0.00 0.00 0.00 2.17
2757 4337 3.620488 AGCATCGGTCCATTGTGTATTT 58.380 40.909 0.00 0.00 0.00 1.40
2758 4338 3.281727 AGCATCGGTCCATTGTGTATT 57.718 42.857 0.00 0.00 0.00 1.89
2759 4339 3.244215 CCTAGCATCGGTCCATTGTGTAT 60.244 47.826 0.00 0.00 0.00 2.29
2760 4340 2.102420 CCTAGCATCGGTCCATTGTGTA 59.898 50.000 0.00 0.00 0.00 2.90
2761 4341 1.134401 CCTAGCATCGGTCCATTGTGT 60.134 52.381 0.00 0.00 0.00 3.72
2762 4342 1.138859 TCCTAGCATCGGTCCATTGTG 59.861 52.381 0.00 0.00 0.00 3.33
2763 4343 1.496060 TCCTAGCATCGGTCCATTGT 58.504 50.000 0.00 0.00 0.00 2.71
2764 4344 2.847327 ATCCTAGCATCGGTCCATTG 57.153 50.000 0.00 0.00 0.00 2.82
2765 4345 2.567615 GGTATCCTAGCATCGGTCCATT 59.432 50.000 0.00 0.00 0.00 3.16
2766 4346 2.180276 GGTATCCTAGCATCGGTCCAT 58.820 52.381 0.00 0.00 0.00 3.41
2948 4661 5.461078 TCAAAAACAGAGAACGTGCTACTAC 59.539 40.000 0.00 0.00 0.00 2.73
3347 5075 2.324860 TGTTGTCTTGTATCGTCTGCG 58.675 47.619 0.00 0.00 39.92 5.18
3366 5094 3.249320 CGTATGGACCAATCAAGCTCATG 59.751 47.826 0.00 0.00 0.00 3.07
3496 5224 8.057623 AGTCTGATATTTTGGGAGTCATTTCAT 58.942 33.333 0.00 0.00 0.00 2.57
3614 5344 5.073144 AGGTAGAAATTGGAACCTTGAGACA 59.927 40.000 1.06 0.00 39.32 3.41
3636 5366 8.352942 GTGCATAATTTGGGATAAACTAGAAGG 58.647 37.037 0.00 0.00 0.00 3.46
3929 5662 3.318839 CAGTTCTGTTGCTTTTCCATCCA 59.681 43.478 0.00 0.00 0.00 3.41
4146 5879 9.782900 TTCATAGAATTTCCCCTTATTTTTCCT 57.217 29.630 0.00 0.00 0.00 3.36
4197 5939 0.178068 GGCTTCTCATCTAACGCCCA 59.822 55.000 0.00 0.00 0.00 5.36
4274 6021 8.443160 CACTATGACACAACAACCTACTAAATG 58.557 37.037 0.00 0.00 0.00 2.32
4323 6071 3.059352 ACAGTGCCTACATTCCTTGTC 57.941 47.619 0.00 0.00 39.87 3.18
4359 6107 6.444633 GCATGATATCTGCTGCAATTTAAGT 58.555 36.000 15.63 0.00 36.68 2.24
4380 6128 3.446161 CCAGGTGATTTGTTCATGAGCAT 59.554 43.478 13.38 0.00 36.54 3.79
4393 6141 2.567615 GAGACCAGTGTACCAGGTGATT 59.432 50.000 0.76 0.00 35.36 2.57
4409 6165 5.589452 TCCGAGTTAGATGTAGAAAGAGACC 59.411 44.000 0.00 0.00 0.00 3.85
4415 6171 8.693120 ATGATAGTCCGAGTTAGATGTAGAAA 57.307 34.615 0.00 0.00 0.00 2.52
4431 6187 6.909550 AGTCTCCATCTACAATGATAGTCC 57.090 41.667 0.00 0.00 0.00 3.85
4466 6222 9.422681 AGGCTAACATTACATACTAAGAAGAGA 57.577 33.333 0.00 0.00 0.00 3.10
4516 6272 7.824289 AGTGCAGCTTAATAATAGTGTTCTCAA 59.176 33.333 0.00 0.00 0.00 3.02
4519 6275 8.567285 AAAGTGCAGCTTAATAATAGTGTTCT 57.433 30.769 0.00 0.00 36.17 3.01
4527 6283 6.071728 AGCAGACAAAAGTGCAGCTTAATAAT 60.072 34.615 0.00 0.00 42.47 1.28
4528 6284 5.241506 AGCAGACAAAAGTGCAGCTTAATAA 59.758 36.000 0.00 0.00 42.47 1.40
4533 6289 1.396653 AGCAGACAAAAGTGCAGCTT 58.603 45.000 0.00 0.00 42.47 3.74
4549 6342 3.354948 AAGGCATGTATCTGTCAAGCA 57.645 42.857 0.00 0.00 32.26 3.91
4551 6344 6.344500 AGACTAAAGGCATGTATCTGTCAAG 58.656 40.000 0.00 0.00 0.00 3.02
4588 6381 8.906867 CATTCATATGGGTAAAGACAACTTCAT 58.093 33.333 2.13 0.00 35.05 2.57
4620 6413 6.942532 ATGTAGCAGGTTACATTTACCATG 57.057 37.500 3.33 0.00 40.44 3.66
4626 6419 7.806180 AGGAGATTATGTAGCAGGTTACATTT 58.194 34.615 12.88 3.48 40.44 2.32
4629 6422 6.156256 ACAAGGAGATTATGTAGCAGGTTACA 59.844 38.462 0.00 0.00 37.89 2.41
4630 6423 6.583562 ACAAGGAGATTATGTAGCAGGTTAC 58.416 40.000 0.00 0.00 0.00 2.50
4646 6439 4.214310 TCAAAATCAAGGCAACAAGGAGA 58.786 39.130 0.00 0.00 41.41 3.71
4669 6462 5.807011 GGCATCAGGAATACATGTCAAAAAC 59.193 40.000 0.00 0.00 0.00 2.43
4672 6466 3.953612 GGGCATCAGGAATACATGTCAAA 59.046 43.478 0.00 0.00 0.00 2.69
4706 6500 9.220767 GAGATGTGAAAACAGTACCTTCTTTAT 57.779 33.333 0.00 0.00 0.00 1.40
4707 6501 7.660208 GGAGATGTGAAAACAGTACCTTCTTTA 59.340 37.037 0.00 0.00 0.00 1.85
4708 6502 6.486993 GGAGATGTGAAAACAGTACCTTCTTT 59.513 38.462 0.00 0.00 0.00 2.52
4709 6503 5.998363 GGAGATGTGAAAACAGTACCTTCTT 59.002 40.000 0.00 0.00 0.00 2.52
4710 6504 5.308237 AGGAGATGTGAAAACAGTACCTTCT 59.692 40.000 0.00 0.00 0.00 2.85
4711 6505 5.552178 AGGAGATGTGAAAACAGTACCTTC 58.448 41.667 0.00 0.00 0.00 3.46
4712 6506 5.568620 AGGAGATGTGAAAACAGTACCTT 57.431 39.130 0.00 0.00 0.00 3.50
4713 6507 6.875972 ATAGGAGATGTGAAAACAGTACCT 57.124 37.500 0.00 0.00 0.00 3.08
4714 6508 8.421784 TGATATAGGAGATGTGAAAACAGTACC 58.578 37.037 0.00 0.00 0.00 3.34
4715 6509 9.250624 GTGATATAGGAGATGTGAAAACAGTAC 57.749 37.037 0.00 0.00 0.00 2.73
4716 6510 9.201989 AGTGATATAGGAGATGTGAAAACAGTA 57.798 33.333 0.00 0.00 0.00 2.74
4717 6511 8.083828 AGTGATATAGGAGATGTGAAAACAGT 57.916 34.615 0.00 0.00 0.00 3.55
4719 6513 9.817809 GTTAGTGATATAGGAGATGTGAAAACA 57.182 33.333 0.00 0.00 0.00 2.83
4720 6514 9.817809 TGTTAGTGATATAGGAGATGTGAAAAC 57.182 33.333 0.00 0.00 0.00 2.43
4722 6516 9.817809 GTTGTTAGTGATATAGGAGATGTGAAA 57.182 33.333 0.00 0.00 0.00 2.69
4723 6517 8.977412 TGTTGTTAGTGATATAGGAGATGTGAA 58.023 33.333 0.00 0.00 0.00 3.18
4724 6518 8.414003 GTGTTGTTAGTGATATAGGAGATGTGA 58.586 37.037 0.00 0.00 0.00 3.58
4725 6519 7.379797 CGTGTTGTTAGTGATATAGGAGATGTG 59.620 40.741 0.00 0.00 0.00 3.21
4726 6520 7.068348 ACGTGTTGTTAGTGATATAGGAGATGT 59.932 37.037 0.00 0.00 0.00 3.06
4727 6521 7.426410 ACGTGTTGTTAGTGATATAGGAGATG 58.574 38.462 0.00 0.00 0.00 2.90
4728 6522 7.584122 ACGTGTTGTTAGTGATATAGGAGAT 57.416 36.000 0.00 0.00 0.00 2.75
4729 6523 7.400599 AACGTGTTGTTAGTGATATAGGAGA 57.599 36.000 0.00 0.00 39.61 3.71
4730 6524 7.010183 CCAAACGTGTTGTTAGTGATATAGGAG 59.990 40.741 0.00 0.00 40.84 3.69
4731 6525 6.814644 CCAAACGTGTTGTTAGTGATATAGGA 59.185 38.462 0.00 0.00 40.84 2.94
4732 6526 6.456449 GCCAAACGTGTTGTTAGTGATATAGG 60.456 42.308 0.00 0.00 40.84 2.57
4733 6527 6.312918 AGCCAAACGTGTTGTTAGTGATATAG 59.687 38.462 0.00 0.00 40.84 1.31
4734 6528 6.167685 AGCCAAACGTGTTGTTAGTGATATA 58.832 36.000 0.00 0.00 40.84 0.86
4735 6529 5.001232 AGCCAAACGTGTTGTTAGTGATAT 58.999 37.500 0.00 0.00 40.84 1.63
4736 6530 4.382291 AGCCAAACGTGTTGTTAGTGATA 58.618 39.130 0.00 0.00 40.84 2.15
4737 6531 3.211045 AGCCAAACGTGTTGTTAGTGAT 58.789 40.909 0.00 0.00 40.84 3.06
4738 6532 2.610374 GAGCCAAACGTGTTGTTAGTGA 59.390 45.455 0.00 0.00 40.84 3.41
4739 6533 2.286772 GGAGCCAAACGTGTTGTTAGTG 60.287 50.000 0.00 0.00 40.84 2.74
4740 6534 1.944709 GGAGCCAAACGTGTTGTTAGT 59.055 47.619 0.00 0.00 40.84 2.24
4741 6535 2.032030 CAGGAGCCAAACGTGTTGTTAG 60.032 50.000 0.00 0.00 40.84 2.34
4742 6536 1.944024 CAGGAGCCAAACGTGTTGTTA 59.056 47.619 0.00 0.00 40.84 2.41
4743 6537 0.738389 CAGGAGCCAAACGTGTTGTT 59.262 50.000 0.00 0.00 44.59 2.83
4744 6538 0.393808 ACAGGAGCCAAACGTGTTGT 60.394 50.000 0.00 0.00 33.57 3.32
4745 6539 0.307760 GACAGGAGCCAAACGTGTTG 59.692 55.000 0.00 0.00 36.68 3.33
4746 6540 0.107410 TGACAGGAGCCAAACGTGTT 60.107 50.000 0.00 0.00 36.68 3.32
4747 6541 0.108585 ATGACAGGAGCCAAACGTGT 59.891 50.000 0.00 0.00 38.70 4.49
4748 6542 1.238439 AATGACAGGAGCCAAACGTG 58.762 50.000 0.00 0.00 0.00 4.49
4749 6543 1.608590 CAAATGACAGGAGCCAAACGT 59.391 47.619 0.00 0.00 0.00 3.99
4750 6544 1.879380 TCAAATGACAGGAGCCAAACG 59.121 47.619 0.00 0.00 0.00 3.60
4751 6545 3.288809 GTCAAATGACAGGAGCCAAAC 57.711 47.619 8.63 0.00 44.18 2.93
4755 6549 5.737413 TTCCGAGTCAAATGACAGGAGCC 62.737 52.174 21.49 0.00 46.60 4.70
4756 6550 2.612972 TTCCGAGTCAAATGACAGGAGC 60.613 50.000 21.49 5.92 46.60 4.70
4757 6551 3.319137 TTCCGAGTCAAATGACAGGAG 57.681 47.619 21.49 9.38 46.60 3.69
4774 6568 3.345508 ACAAGTTAGGGTCGGAATTCC 57.654 47.619 15.01 15.01 0.00 3.01
4775 6569 4.082949 CCAAACAAGTTAGGGTCGGAATTC 60.083 45.833 0.00 0.00 0.00 2.17
4776 6570 3.824443 CCAAACAAGTTAGGGTCGGAATT 59.176 43.478 0.00 0.00 0.00 2.17
4777 6571 3.418047 CCAAACAAGTTAGGGTCGGAAT 58.582 45.455 0.00 0.00 0.00 3.01
4778 6572 2.853705 CCAAACAAGTTAGGGTCGGAA 58.146 47.619 0.00 0.00 0.00 4.30
4779 6573 1.543871 GCCAAACAAGTTAGGGTCGGA 60.544 52.381 5.74 0.00 0.00 4.55
4780 6574 0.879090 GCCAAACAAGTTAGGGTCGG 59.121 55.000 5.74 0.00 0.00 4.79
4781 6575 1.535462 CAGCCAAACAAGTTAGGGTCG 59.465 52.381 5.74 0.00 0.00 4.79
4782 6576 1.269723 GCAGCCAAACAAGTTAGGGTC 59.730 52.381 5.74 0.38 0.00 4.46
4783 6577 1.328279 GCAGCCAAACAAGTTAGGGT 58.672 50.000 5.74 0.00 0.00 4.34
4784 6578 0.603065 GGCAGCCAAACAAGTTAGGG 59.397 55.000 6.55 0.63 0.00 3.53
4785 6579 1.327303 TGGCAGCCAAACAAGTTAGG 58.673 50.000 13.33 0.00 0.00 2.69
4786 6580 2.353011 CCATGGCAGCCAAACAAGTTAG 60.353 50.000 20.84 0.00 36.95 2.34
4787 6581 1.617850 CCATGGCAGCCAAACAAGTTA 59.382 47.619 20.84 0.00 36.95 2.24
4788 6582 0.393820 CCATGGCAGCCAAACAAGTT 59.606 50.000 20.84 0.00 36.95 2.66
4789 6583 0.469705 TCCATGGCAGCCAAACAAGT 60.470 50.000 20.84 0.00 36.95 3.16
4790 6584 0.899720 ATCCATGGCAGCCAAACAAG 59.100 50.000 20.84 5.70 36.95 3.16
4791 6585 1.350071 AATCCATGGCAGCCAAACAA 58.650 45.000 20.84 4.82 36.95 2.83
4792 6586 1.350071 AAATCCATGGCAGCCAAACA 58.650 45.000 20.84 4.98 36.95 2.83
4793 6587 2.760092 TCTAAATCCATGGCAGCCAAAC 59.240 45.455 20.84 0.00 36.95 2.93
4794 6588 2.760092 GTCTAAATCCATGGCAGCCAAA 59.240 45.455 20.84 7.68 36.95 3.28
4795 6589 2.291475 TGTCTAAATCCATGGCAGCCAA 60.291 45.455 20.84 1.44 36.95 4.52
4796 6590 1.284491 TGTCTAAATCCATGGCAGCCA 59.716 47.619 18.99 18.99 38.19 4.75
4797 6591 1.678101 GTGTCTAAATCCATGGCAGCC 59.322 52.381 6.96 3.66 0.00 4.85
4798 6592 2.357009 CTGTGTCTAAATCCATGGCAGC 59.643 50.000 6.96 0.00 0.00 5.25
4799 6593 2.947652 CCTGTGTCTAAATCCATGGCAG 59.052 50.000 6.96 5.05 0.00 4.85
4800 6594 2.575735 TCCTGTGTCTAAATCCATGGCA 59.424 45.455 6.96 0.00 0.00 4.92
4801 6595 3.281727 TCCTGTGTCTAAATCCATGGC 57.718 47.619 6.96 0.00 0.00 4.40
4802 6596 5.887598 TGAAATCCTGTGTCTAAATCCATGG 59.112 40.000 4.97 4.97 0.00 3.66
4803 6597 7.578310 ATGAAATCCTGTGTCTAAATCCATG 57.422 36.000 0.00 0.00 0.00 3.66
4804 6598 8.472413 CAAATGAAATCCTGTGTCTAAATCCAT 58.528 33.333 0.00 0.00 0.00 3.41
4805 6599 7.829725 CAAATGAAATCCTGTGTCTAAATCCA 58.170 34.615 0.00 0.00 0.00 3.41
5148 6942 4.836825 TCATTGCTCGAGGATCTTCTTTT 58.163 39.130 15.58 0.00 0.00 2.27
5149 6943 4.478206 TCATTGCTCGAGGATCTTCTTT 57.522 40.909 15.58 0.00 0.00 2.52
5150 6944 4.478206 TTCATTGCTCGAGGATCTTCTT 57.522 40.909 15.58 0.00 0.00 2.52
5151 6945 4.478206 TTTCATTGCTCGAGGATCTTCT 57.522 40.909 15.58 0.00 0.00 2.85
5152 6946 5.526846 AGATTTTCATTGCTCGAGGATCTTC 59.473 40.000 15.58 0.00 0.00 2.87
5153 6947 5.435291 AGATTTTCATTGCTCGAGGATCTT 58.565 37.500 15.58 0.00 0.00 2.40
5154 6948 5.033589 AGATTTTCATTGCTCGAGGATCT 57.966 39.130 15.58 6.35 0.00 2.75
5155 6949 5.747951 AAGATTTTCATTGCTCGAGGATC 57.252 39.130 15.58 3.87 0.00 3.36
5156 6950 5.884792 AGAAAGATTTTCATTGCTCGAGGAT 59.115 36.000 15.58 0.00 0.00 3.24
5157 6951 5.248640 AGAAAGATTTTCATTGCTCGAGGA 58.751 37.500 15.58 9.02 0.00 3.71
5158 6952 5.557891 AGAAAGATTTTCATTGCTCGAGG 57.442 39.130 15.58 0.00 0.00 4.63
5159 6953 5.798934 CCAAGAAAGATTTTCATTGCTCGAG 59.201 40.000 8.45 8.45 0.00 4.04
5160 6954 5.335897 CCCAAGAAAGATTTTCATTGCTCGA 60.336 40.000 4.56 0.00 0.00 4.04
5161 6955 4.860907 CCCAAGAAAGATTTTCATTGCTCG 59.139 41.667 4.56 0.00 0.00 5.03
5162 6956 5.636543 CACCCAAGAAAGATTTTCATTGCTC 59.363 40.000 4.56 0.00 0.00 4.26
5163 6957 5.511888 CCACCCAAGAAAGATTTTCATTGCT 60.512 40.000 4.56 0.00 0.00 3.91
5164 6958 4.692155 CCACCCAAGAAAGATTTTCATTGC 59.308 41.667 4.56 0.00 0.00 3.56
5165 6959 5.697633 CACCACCCAAGAAAGATTTTCATTG 59.302 40.000 4.56 5.85 0.00 2.82
5166 6960 5.742838 GCACCACCCAAGAAAGATTTTCATT 60.743 40.000 4.56 0.00 0.00 2.57
5167 6961 4.262592 GCACCACCCAAGAAAGATTTTCAT 60.263 41.667 4.56 0.00 0.00 2.57
5168 6962 3.069443 GCACCACCCAAGAAAGATTTTCA 59.931 43.478 4.56 0.00 0.00 2.69
5169 6963 3.321968 AGCACCACCCAAGAAAGATTTTC 59.678 43.478 0.00 0.00 0.00 2.29
5170 6964 3.308401 AGCACCACCCAAGAAAGATTTT 58.692 40.909 0.00 0.00 0.00 1.82
5171 6965 2.962859 AGCACCACCCAAGAAAGATTT 58.037 42.857 0.00 0.00 0.00 2.17
5172 6966 2.683211 AGCACCACCCAAGAAAGATT 57.317 45.000 0.00 0.00 0.00 2.40
5173 6967 3.806949 TTAGCACCACCCAAGAAAGAT 57.193 42.857 0.00 0.00 0.00 2.40
5174 6968 3.806949 ATTAGCACCACCCAAGAAAGA 57.193 42.857 0.00 0.00 0.00 2.52
5175 6969 5.679638 GCATTATTAGCACCACCCAAGAAAG 60.680 44.000 0.00 0.00 0.00 2.62
5176 6970 4.159506 GCATTATTAGCACCACCCAAGAAA 59.840 41.667 0.00 0.00 0.00 2.52
5177 6971 3.699038 GCATTATTAGCACCACCCAAGAA 59.301 43.478 0.00 0.00 0.00 2.52
5178 6972 3.287222 GCATTATTAGCACCACCCAAGA 58.713 45.455 0.00 0.00 0.00 3.02
5179 6973 3.023119 TGCATTATTAGCACCACCCAAG 58.977 45.455 0.00 0.00 37.02 3.61
5180 6974 3.093057 TGCATTATTAGCACCACCCAA 57.907 42.857 0.00 0.00 37.02 4.12
5181 6975 2.816777 TGCATTATTAGCACCACCCA 57.183 45.000 0.00 0.00 37.02 4.51
5182 6976 3.181476 CCTTTGCATTATTAGCACCACCC 60.181 47.826 0.00 0.00 42.54 4.61
5183 6977 3.447229 ACCTTTGCATTATTAGCACCACC 59.553 43.478 0.00 0.00 42.54 4.61
5184 6978 4.718940 ACCTTTGCATTATTAGCACCAC 57.281 40.909 0.00 0.00 42.54 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.