Multiple sequence alignment - TraesCS2D01G484500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G484500 chr2D 100.000 2032 0 0 1 2032 585518900 585520931 0.000000e+00 3753.0
1 TraesCS2D01G484500 chr2D 84.222 1350 126 38 552 1869 585636025 585637319 0.000000e+00 1232.0
2 TraesCS2D01G484500 chr2D 100.000 268 0 0 2341 2608 585521240 585521507 1.800000e-136 496.0
3 TraesCS2D01G484500 chr2B 88.723 1543 112 32 516 2032 706567352 706568858 0.000000e+00 1829.0
4 TraesCS2D01G484500 chr2B 84.775 1399 115 54 389 1730 706698580 706699937 0.000000e+00 1314.0
5 TraesCS2D01G484500 chr2B 87.407 540 39 9 639 1149 770607532 770608071 6.210000e-166 593.0
6 TraesCS2D01G484500 chr2B 83.772 228 27 5 1680 1907 706421760 706421977 9.460000e-50 207.0
7 TraesCS2D01G484500 chr2B 87.097 186 14 6 1723 1906 706699990 706700167 4.400000e-48 202.0
8 TraesCS2D01G484500 chr2B 84.444 90 3 5 416 494 706567218 706567307 7.740000e-11 78.7
9 TraesCS2D01G484500 chr2A 84.040 1416 125 44 548 1912 719685602 719686967 0.000000e+00 1269.0
10 TraesCS2D01G484500 chr2A 90.143 842 69 8 1197 2032 719566219 719567052 0.000000e+00 1083.0
11 TraesCS2D01G484500 chr2A 86.256 844 80 17 1194 2032 719626388 719627200 0.000000e+00 883.0
12 TraesCS2D01G484500 chr2A 85.399 815 55 29 416 1180 719564953 719565753 0.000000e+00 787.0
13 TraesCS2D01G484500 chr2A 83.361 595 31 20 411 941 719573766 719574356 3.020000e-134 488.0
14 TraesCS2D01G484500 chr2A 94.074 135 6 1 3 135 27357717 27357583 1.220000e-48 204.0
15 TraesCS2D01G484500 chr7B 87.778 540 37 10 639 1149 616817209 616816670 2.870000e-169 604.0
16 TraesCS2D01G484500 chr7B 87.960 299 21 6 866 1149 686970425 686970723 3.210000e-89 339.0
17 TraesCS2D01G484500 chr7B 87.448 239 16 4 639 863 686969080 686969318 1.990000e-66 263.0
18 TraesCS2D01G484500 chr7B 94.203 138 5 1 1 135 613152885 613153022 9.460000e-50 207.0
19 TraesCS2D01G484500 chr7B 93.478 138 6 1 1 135 613153440 613153577 4.400000e-48 202.0
20 TraesCS2D01G484500 chr1B 87.593 540 38 10 639 1149 62244920 62245459 1.340000e-167 599.0
21 TraesCS2D01G484500 chr4B 87.640 534 38 9 639 1144 649654642 649654109 1.730000e-166 595.0
22 TraesCS2D01G484500 chr5B 87.222 540 40 10 639 1149 250133964 250134503 2.890000e-164 588.0
23 TraesCS2D01G484500 chr6B 81.005 637 76 23 855 1477 57458471 57457866 5.080000e-127 464.0
24 TraesCS2D01G484500 chr6B 81.122 392 42 15 1601 1983 57457817 57457449 4.250000e-73 285.0
25 TraesCS2D01G484500 chr6B 94.118 136 4 2 3 135 561255026 561255160 1.220000e-48 204.0
26 TraesCS2D01G484500 chr6D 86.575 365 40 6 1250 1613 436404788 436404432 6.770000e-106 394.0
27 TraesCS2D01G484500 chr6D 78.680 394 44 17 1601 1985 30073444 30073806 2.610000e-55 226.0
28 TraesCS2D01G484500 chr6A 85.950 363 34 8 1250 1611 584508158 584507812 3.170000e-99 372.0
29 TraesCS2D01G484500 chr6A 85.165 364 37 13 1250 1612 584531225 584530878 8.880000e-95 357.0
30 TraesCS2D01G484500 chr7A 94.074 135 6 1 3 135 306435025 306434891 1.220000e-48 204.0
31 TraesCS2D01G484500 chr4A 94.118 136 5 1 3 135 179164703 179164568 1.220000e-48 204.0
32 TraesCS2D01G484500 chr5A 91.156 147 8 3 1 143 562480018 562480163 7.360000e-46 195.0
33 TraesCS2D01G484500 chr5A 92.701 137 6 2 3 136 616432598 616432733 7.360000e-46 195.0
34 TraesCS2D01G484500 chr1A 92.647 136 7 2 3 135 303795424 303795289 2.650000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G484500 chr2D 585518900 585521507 2607 False 2124.50 3753 100.0000 1 2608 2 chr2D.!!$F2 2607
1 TraesCS2D01G484500 chr2D 585636025 585637319 1294 False 1232.00 1232 84.2220 552 1869 1 chr2D.!!$F1 1317
2 TraesCS2D01G484500 chr2B 706567218 706568858 1640 False 953.85 1829 86.5835 416 2032 2 chr2B.!!$F3 1616
3 TraesCS2D01G484500 chr2B 706698580 706700167 1587 False 758.00 1314 85.9360 389 1906 2 chr2B.!!$F4 1517
4 TraesCS2D01G484500 chr2B 770607532 770608071 539 False 593.00 593 87.4070 639 1149 1 chr2B.!!$F2 510
5 TraesCS2D01G484500 chr2A 719685602 719686967 1365 False 1269.00 1269 84.0400 548 1912 1 chr2A.!!$F3 1364
6 TraesCS2D01G484500 chr2A 719564953 719567052 2099 False 935.00 1083 87.7710 416 2032 2 chr2A.!!$F4 1616
7 TraesCS2D01G484500 chr2A 719626388 719627200 812 False 883.00 883 86.2560 1194 2032 1 chr2A.!!$F2 838
8 TraesCS2D01G484500 chr2A 719573766 719574356 590 False 488.00 488 83.3610 411 941 1 chr2A.!!$F1 530
9 TraesCS2D01G484500 chr7B 616816670 616817209 539 True 604.00 604 87.7780 639 1149 1 chr7B.!!$R1 510
10 TraesCS2D01G484500 chr7B 686969080 686970723 1643 False 301.00 339 87.7040 639 1149 2 chr7B.!!$F2 510
11 TraesCS2D01G484500 chr7B 613152885 613153577 692 False 204.50 207 93.8405 1 135 2 chr7B.!!$F1 134
12 TraesCS2D01G484500 chr1B 62244920 62245459 539 False 599.00 599 87.5930 639 1149 1 chr1B.!!$F1 510
13 TraesCS2D01G484500 chr4B 649654109 649654642 533 True 595.00 595 87.6400 639 1144 1 chr4B.!!$R1 505
14 TraesCS2D01G484500 chr5B 250133964 250134503 539 False 588.00 588 87.2220 639 1149 1 chr5B.!!$F1 510
15 TraesCS2D01G484500 chr6B 57457449 57458471 1022 True 374.50 464 81.0635 855 1983 2 chr6B.!!$R1 1128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 765 0.027324 GTTAGCGATGCAGCAAGAGC 59.973 55.0 1.53 5.53 40.15 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 4009 0.035056 AAGCGGGGATCTTTGACCAG 60.035 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 694 0.674895 GTGGACAGCAGCCCTAACAG 60.675 60.000 0.00 0.00 0.00 3.16
136 695 0.835971 TGGACAGCAGCCCTAACAGA 60.836 55.000 0.00 0.00 0.00 3.41
137 696 0.107945 GGACAGCAGCCCTAACAGAG 60.108 60.000 0.00 0.00 0.00 3.35
138 697 0.742635 GACAGCAGCCCTAACAGAGC 60.743 60.000 0.00 0.00 0.00 4.09
139 698 1.197430 ACAGCAGCCCTAACAGAGCT 61.197 55.000 0.00 0.00 37.32 4.09
140 699 0.461693 CAGCAGCCCTAACAGAGCTC 60.462 60.000 5.27 5.27 33.70 4.09
141 700 0.617249 AGCAGCCCTAACAGAGCTCT 60.617 55.000 11.45 11.45 33.70 4.09
142 701 1.115467 GCAGCCCTAACAGAGCTCTA 58.885 55.000 17.75 0.00 33.70 2.43
143 702 1.202475 GCAGCCCTAACAGAGCTCTAC 60.202 57.143 17.75 0.22 33.70 2.59
144 703 2.103373 CAGCCCTAACAGAGCTCTACA 58.897 52.381 17.75 3.35 33.70 2.74
145 704 2.697751 CAGCCCTAACAGAGCTCTACAT 59.302 50.000 17.75 8.10 33.70 2.29
146 705 3.133721 CAGCCCTAACAGAGCTCTACATT 59.866 47.826 17.75 13.46 33.70 2.71
147 706 3.777522 AGCCCTAACAGAGCTCTACATTT 59.222 43.478 17.75 9.81 28.40 2.32
148 707 3.873952 GCCCTAACAGAGCTCTACATTTG 59.126 47.826 17.75 11.63 0.00 2.32
149 708 3.873952 CCCTAACAGAGCTCTACATTTGC 59.126 47.826 17.75 0.00 0.00 3.68
150 709 3.873952 CCTAACAGAGCTCTACATTTGCC 59.126 47.826 17.75 0.00 0.00 4.52
151 710 2.015736 ACAGAGCTCTACATTTGCCG 57.984 50.000 17.75 2.93 0.00 5.69
152 711 1.293924 CAGAGCTCTACATTTGCCGG 58.706 55.000 17.75 0.00 0.00 6.13
153 712 0.905357 AGAGCTCTACATTTGCCGGT 59.095 50.000 16.50 0.00 0.00 5.28
154 713 1.279271 AGAGCTCTACATTTGCCGGTT 59.721 47.619 16.50 0.00 0.00 4.44
155 714 1.666189 GAGCTCTACATTTGCCGGTTC 59.334 52.381 6.43 0.00 0.00 3.62
156 715 1.003118 AGCTCTACATTTGCCGGTTCA 59.997 47.619 1.90 0.00 0.00 3.18
157 716 2.017049 GCTCTACATTTGCCGGTTCAT 58.983 47.619 1.90 0.00 0.00 2.57
158 717 2.223340 GCTCTACATTTGCCGGTTCATG 60.223 50.000 1.90 5.30 0.00 3.07
159 718 3.009723 CTCTACATTTGCCGGTTCATGT 58.990 45.455 15.84 15.84 34.27 3.21
160 719 3.006940 TCTACATTTGCCGGTTCATGTC 58.993 45.455 15.23 0.00 32.15 3.06
161 720 1.614996 ACATTTGCCGGTTCATGTCA 58.385 45.000 1.90 0.00 0.00 3.58
162 721 1.269448 ACATTTGCCGGTTCATGTCAC 59.731 47.619 1.90 0.00 0.00 3.67
163 722 0.521291 ATTTGCCGGTTCATGTCACG 59.479 50.000 1.90 0.00 0.00 4.35
164 723 2.123988 TTTGCCGGTTCATGTCACGC 62.124 55.000 1.90 0.00 0.00 5.34
165 724 2.742372 GCCGGTTCATGTCACGCT 60.742 61.111 1.90 0.00 0.00 5.07
166 725 2.325082 GCCGGTTCATGTCACGCTT 61.325 57.895 1.90 0.00 0.00 4.68
167 726 1.497278 CCGGTTCATGTCACGCTTG 59.503 57.895 0.00 0.00 0.00 4.01
168 727 1.154413 CGGTTCATGTCACGCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
169 728 1.210155 GGTTCATGTCACGCTTGCC 59.790 57.895 0.00 0.00 0.00 4.52
170 729 1.514678 GGTTCATGTCACGCTTGCCA 61.515 55.000 0.00 0.00 0.00 4.92
171 730 0.110056 GTTCATGTCACGCTTGCCAG 60.110 55.000 0.00 0.00 0.00 4.85
172 731 1.236616 TTCATGTCACGCTTGCCAGG 61.237 55.000 0.00 0.00 0.00 4.45
173 732 1.672030 CATGTCACGCTTGCCAGGA 60.672 57.895 0.00 0.00 0.00 3.86
174 733 1.073025 ATGTCACGCTTGCCAGGAA 59.927 52.632 0.00 0.00 0.00 3.36
175 734 0.537143 ATGTCACGCTTGCCAGGAAA 60.537 50.000 0.00 0.00 0.00 3.13
176 735 0.749818 TGTCACGCTTGCCAGGAAAA 60.750 50.000 0.00 0.00 0.00 2.29
177 736 0.317854 GTCACGCTTGCCAGGAAAAC 60.318 55.000 0.00 0.00 0.00 2.43
178 737 0.465460 TCACGCTTGCCAGGAAAACT 60.465 50.000 0.00 0.00 0.00 2.66
197 756 3.648179 CTGAAGTTCAGTTAGCGATGC 57.352 47.619 22.48 0.00 39.58 3.91
198 757 2.995939 CTGAAGTTCAGTTAGCGATGCA 59.004 45.455 22.48 0.00 39.58 3.96
199 758 2.995939 TGAAGTTCAGTTAGCGATGCAG 59.004 45.455 0.08 0.00 0.00 4.41
200 759 1.363744 AGTTCAGTTAGCGATGCAGC 58.636 50.000 0.00 0.00 37.41 5.25
201 760 1.078709 GTTCAGTTAGCGATGCAGCA 58.921 50.000 1.53 0.00 40.15 4.41
202 761 1.464608 GTTCAGTTAGCGATGCAGCAA 59.535 47.619 1.53 0.00 40.15 3.91
203 762 1.362768 TCAGTTAGCGATGCAGCAAG 58.637 50.000 1.53 0.00 40.15 4.01
204 763 1.066929 TCAGTTAGCGATGCAGCAAGA 60.067 47.619 1.53 0.00 40.15 3.02
205 764 1.326852 CAGTTAGCGATGCAGCAAGAG 59.673 52.381 1.53 0.00 40.15 2.85
206 765 0.027324 GTTAGCGATGCAGCAAGAGC 59.973 55.000 1.53 5.53 40.15 4.09
223 782 6.725246 GCAAGAGCTAGTTAACTGAAAAACA 58.275 36.000 18.56 0.00 37.91 2.83
224 783 7.363431 GCAAGAGCTAGTTAACTGAAAAACAT 58.637 34.615 18.56 0.00 37.91 2.71
225 784 7.324616 GCAAGAGCTAGTTAACTGAAAAACATG 59.675 37.037 18.56 8.60 37.91 3.21
226 785 7.440523 AGAGCTAGTTAACTGAAAAACATGG 57.559 36.000 18.56 0.00 0.00 3.66
227 786 6.013842 AGCTAGTTAACTGAAAAACATGGC 57.986 37.500 18.56 2.35 0.00 4.40
228 787 5.048013 AGCTAGTTAACTGAAAAACATGGCC 60.048 40.000 18.56 0.00 0.00 5.36
229 788 4.237349 AGTTAACTGAAAAACATGGCCG 57.763 40.909 7.48 0.00 0.00 6.13
230 789 3.886505 AGTTAACTGAAAAACATGGCCGA 59.113 39.130 7.48 0.00 0.00 5.54
231 790 4.339814 AGTTAACTGAAAAACATGGCCGAA 59.660 37.500 7.48 0.00 0.00 4.30
232 791 3.369546 AACTGAAAAACATGGCCGAAG 57.630 42.857 0.00 0.00 0.00 3.79
233 792 2.306847 ACTGAAAAACATGGCCGAAGT 58.693 42.857 0.00 0.00 0.00 3.01
234 793 2.293399 ACTGAAAAACATGGCCGAAGTC 59.707 45.455 0.00 0.00 0.00 3.01
235 794 1.611491 TGAAAAACATGGCCGAAGTCC 59.389 47.619 0.00 0.00 0.00 3.85
236 795 0.966179 AAAAACATGGCCGAAGTCCC 59.034 50.000 0.00 0.00 0.00 4.46
237 796 0.178975 AAAACATGGCCGAAGTCCCA 60.179 50.000 0.00 0.00 35.21 4.37
238 797 0.039618 AAACATGGCCGAAGTCCCAT 59.960 50.000 0.00 0.00 42.41 4.00
239 798 0.039618 AACATGGCCGAAGTCCCATT 59.960 50.000 0.00 0.00 39.76 3.16
240 799 0.680921 ACATGGCCGAAGTCCCATTG 60.681 55.000 0.00 0.00 39.76 2.82
241 800 1.754234 ATGGCCGAAGTCCCATTGC 60.754 57.895 0.00 0.00 38.67 3.56
242 801 2.044946 GGCCGAAGTCCCATTGCT 60.045 61.111 0.00 0.00 0.00 3.91
243 802 1.678970 GGCCGAAGTCCCATTGCTT 60.679 57.895 0.00 0.00 0.00 3.91
244 803 1.657751 GGCCGAAGTCCCATTGCTTC 61.658 60.000 0.00 0.00 38.11 3.86
245 804 0.678048 GCCGAAGTCCCATTGCTTCT 60.678 55.000 0.00 0.00 39.01 2.85
246 805 1.373570 CCGAAGTCCCATTGCTTCTC 58.626 55.000 0.00 0.00 39.01 2.87
247 806 1.002366 CGAAGTCCCATTGCTTCTCG 58.998 55.000 0.00 0.00 39.01 4.04
248 807 1.373570 GAAGTCCCATTGCTTCTCGG 58.626 55.000 0.00 0.00 38.36 4.63
249 808 0.984230 AAGTCCCATTGCTTCTCGGA 59.016 50.000 0.00 0.00 0.00 4.55
250 809 0.250513 AGTCCCATTGCTTCTCGGAC 59.749 55.000 0.00 0.00 42.79 4.79
251 810 0.744771 GTCCCATTGCTTCTCGGACC 60.745 60.000 0.00 0.00 37.60 4.46
252 811 1.198094 TCCCATTGCTTCTCGGACCA 61.198 55.000 0.00 0.00 0.00 4.02
253 812 0.745845 CCCATTGCTTCTCGGACCAG 60.746 60.000 0.00 0.00 0.00 4.00
254 813 1.372087 CCATTGCTTCTCGGACCAGC 61.372 60.000 0.00 0.00 0.00 4.85
255 814 1.078143 ATTGCTTCTCGGACCAGCC 60.078 57.895 0.00 0.00 32.11 4.85
256 815 1.841302 ATTGCTTCTCGGACCAGCCA 61.841 55.000 0.00 0.00 35.94 4.75
257 816 2.125350 GCTTCTCGGACCAGCCAG 60.125 66.667 0.00 0.00 35.94 4.85
258 817 2.125350 CTTCTCGGACCAGCCAGC 60.125 66.667 0.00 0.00 35.94 4.85
259 818 2.604686 TTCTCGGACCAGCCAGCT 60.605 61.111 0.00 0.00 35.94 4.24
260 819 2.849120 CTTCTCGGACCAGCCAGCTG 62.849 65.000 12.78 12.78 43.26 4.24
261 820 3.385384 CTCGGACCAGCCAGCTGA 61.385 66.667 21.01 0.00 46.30 4.26
262 821 3.368190 CTCGGACCAGCCAGCTGAG 62.368 68.421 21.01 12.90 46.30 3.35
263 822 3.699894 CGGACCAGCCAGCTGAGT 61.700 66.667 21.01 15.86 46.30 3.41
264 823 2.753029 GGACCAGCCAGCTGAGTT 59.247 61.111 21.01 4.74 46.30 3.01
265 824 1.376553 GGACCAGCCAGCTGAGTTC 60.377 63.158 21.01 11.67 46.30 3.01
266 825 1.372683 GACCAGCCAGCTGAGTTCA 59.627 57.895 21.01 0.00 46.30 3.18
267 826 0.035630 GACCAGCCAGCTGAGTTCAT 60.036 55.000 21.01 0.00 46.30 2.57
268 827 0.322277 ACCAGCCAGCTGAGTTCATG 60.322 55.000 21.01 4.86 46.30 3.07
269 828 1.030488 CCAGCCAGCTGAGTTCATGG 61.030 60.000 21.01 9.59 46.30 3.66
270 829 0.322277 CAGCCAGCTGAGTTCATGGT 60.322 55.000 17.39 0.00 46.30 3.55
271 830 0.035630 AGCCAGCTGAGTTCATGGTC 60.036 55.000 17.39 0.00 35.17 4.02
272 831 0.321919 GCCAGCTGAGTTCATGGTCA 60.322 55.000 17.39 0.00 35.17 4.02
273 832 1.681166 GCCAGCTGAGTTCATGGTCAT 60.681 52.381 17.39 0.00 35.17 3.06
274 833 2.719739 CCAGCTGAGTTCATGGTCATT 58.280 47.619 17.39 0.00 0.00 2.57
275 834 2.422479 CCAGCTGAGTTCATGGTCATTG 59.578 50.000 17.39 0.00 0.00 2.82
276 835 3.340928 CAGCTGAGTTCATGGTCATTGA 58.659 45.455 8.42 0.00 0.00 2.57
277 836 3.945921 CAGCTGAGTTCATGGTCATTGAT 59.054 43.478 8.42 0.00 0.00 2.57
278 837 4.398358 CAGCTGAGTTCATGGTCATTGATT 59.602 41.667 8.42 0.00 0.00 2.57
279 838 5.014858 AGCTGAGTTCATGGTCATTGATTT 58.985 37.500 0.00 0.00 0.00 2.17
280 839 5.100259 GCTGAGTTCATGGTCATTGATTTG 58.900 41.667 0.00 0.00 0.00 2.32
281 840 5.647589 CTGAGTTCATGGTCATTGATTTGG 58.352 41.667 0.00 0.00 0.00 3.28
282 841 5.078949 TGAGTTCATGGTCATTGATTTGGT 58.921 37.500 0.00 0.00 0.00 3.67
283 842 5.539574 TGAGTTCATGGTCATTGATTTGGTT 59.460 36.000 0.00 0.00 0.00 3.67
284 843 6.718912 TGAGTTCATGGTCATTGATTTGGTTA 59.281 34.615 0.00 0.00 0.00 2.85
285 844 7.094248 TGAGTTCATGGTCATTGATTTGGTTAG 60.094 37.037 0.00 0.00 0.00 2.34
286 845 5.581126 TCATGGTCATTGATTTGGTTAGC 57.419 39.130 0.00 0.00 0.00 3.09
287 846 5.015515 TCATGGTCATTGATTTGGTTAGCA 58.984 37.500 0.00 0.00 0.00 3.49
288 847 4.782019 TGGTCATTGATTTGGTTAGCAC 57.218 40.909 0.00 0.00 0.00 4.40
289 848 4.406456 TGGTCATTGATTTGGTTAGCACT 58.594 39.130 0.00 0.00 0.00 4.40
290 849 4.832266 TGGTCATTGATTTGGTTAGCACTT 59.168 37.500 0.00 0.00 0.00 3.16
291 850 5.304101 TGGTCATTGATTTGGTTAGCACTTT 59.696 36.000 0.00 0.00 0.00 2.66
292 851 5.634859 GGTCATTGATTTGGTTAGCACTTTG 59.365 40.000 0.00 0.00 0.00 2.77
293 852 5.119125 GTCATTGATTTGGTTAGCACTTTGC 59.881 40.000 0.00 0.00 45.46 3.68
303 862 3.739077 GCACTTTGCAAACACAGGT 57.261 47.368 8.05 1.08 44.26 4.00
304 863 2.008752 GCACTTTGCAAACACAGGTT 57.991 45.000 8.05 0.00 44.26 3.50
305 864 1.926510 GCACTTTGCAAACACAGGTTC 59.073 47.619 8.05 0.00 44.26 3.62
306 865 2.417243 GCACTTTGCAAACACAGGTTCT 60.417 45.455 8.05 0.00 44.26 3.01
307 866 3.181397 CACTTTGCAAACACAGGTTCTG 58.819 45.455 8.05 0.00 35.82 3.02
308 867 2.825532 ACTTTGCAAACACAGGTTCTGT 59.174 40.909 8.05 0.00 46.51 3.41
309 868 4.013728 ACTTTGCAAACACAGGTTCTGTA 58.986 39.130 8.05 0.00 43.43 2.74
310 869 4.461081 ACTTTGCAAACACAGGTTCTGTAA 59.539 37.500 8.05 0.00 43.43 2.41
311 870 5.047660 ACTTTGCAAACACAGGTTCTGTAAA 60.048 36.000 8.05 0.00 43.43 2.01
312 871 4.630894 TGCAAACACAGGTTCTGTAAAG 57.369 40.909 0.00 0.00 43.43 1.85
313 872 4.013728 TGCAAACACAGGTTCTGTAAAGT 58.986 39.130 0.00 0.00 43.43 2.66
314 873 4.461081 TGCAAACACAGGTTCTGTAAAGTT 59.539 37.500 0.00 0.00 43.43 2.66
315 874 4.798387 GCAAACACAGGTTCTGTAAAGTTG 59.202 41.667 0.00 4.65 43.43 3.16
316 875 5.392595 GCAAACACAGGTTCTGTAAAGTTGA 60.393 40.000 0.00 0.00 43.43 3.18
317 876 6.258160 CAAACACAGGTTCTGTAAAGTTGAG 58.742 40.000 0.00 0.00 43.43 3.02
318 877 5.099042 ACACAGGTTCTGTAAAGTTGAGT 57.901 39.130 0.00 0.00 43.43 3.41
319 878 6.229936 ACACAGGTTCTGTAAAGTTGAGTA 57.770 37.500 0.00 0.00 43.43 2.59
320 879 6.827727 ACACAGGTTCTGTAAAGTTGAGTAT 58.172 36.000 0.00 0.00 43.43 2.12
321 880 7.959175 ACACAGGTTCTGTAAAGTTGAGTATA 58.041 34.615 0.00 0.00 43.43 1.47
322 881 8.594550 ACACAGGTTCTGTAAAGTTGAGTATAT 58.405 33.333 0.00 0.00 43.43 0.86
326 885 9.765795 AGGTTCTGTAAAGTTGAGTATATATGC 57.234 33.333 0.00 0.00 0.00 3.14
327 886 9.765795 GGTTCTGTAAAGTTGAGTATATATGCT 57.234 33.333 2.61 2.61 0.00 3.79
329 888 9.982651 TTCTGTAAAGTTGAGTATATATGCTCC 57.017 33.333 23.19 12.01 38.55 4.70
330 889 9.143155 TCTGTAAAGTTGAGTATATATGCTCCA 57.857 33.333 23.19 13.06 38.55 3.86
331 890 9.764363 CTGTAAAGTTGAGTATATATGCTCCAA 57.236 33.333 23.19 15.87 38.55 3.53
347 906 6.207691 TGCTCCAATTTAACCTTATTGAGC 57.792 37.500 0.00 0.00 36.53 4.26
348 907 5.127031 TGCTCCAATTTAACCTTATTGAGCC 59.873 40.000 0.00 0.00 35.92 4.70
349 908 5.127031 GCTCCAATTTAACCTTATTGAGCCA 59.873 40.000 0.00 0.00 34.44 4.75
350 909 6.681368 GCTCCAATTTAACCTTATTGAGCCAG 60.681 42.308 0.00 0.00 34.44 4.85
351 910 6.252995 TCCAATTTAACCTTATTGAGCCAGT 58.747 36.000 0.00 0.00 34.44 4.00
352 911 7.406916 TCCAATTTAACCTTATTGAGCCAGTA 58.593 34.615 0.00 0.00 34.44 2.74
353 912 7.891183 TCCAATTTAACCTTATTGAGCCAGTAA 59.109 33.333 0.00 0.00 34.44 2.24
354 913 8.695456 CCAATTTAACCTTATTGAGCCAGTAAT 58.305 33.333 0.00 0.00 34.44 1.89
357 916 5.582689 AACCTTATTGAGCCAGTAATTGC 57.417 39.130 0.00 0.00 0.00 3.56
358 917 4.599041 ACCTTATTGAGCCAGTAATTGCA 58.401 39.130 0.00 0.00 0.00 4.08
359 918 4.641989 ACCTTATTGAGCCAGTAATTGCAG 59.358 41.667 0.00 0.00 0.00 4.41
360 919 4.641989 CCTTATTGAGCCAGTAATTGCAGT 59.358 41.667 0.00 0.00 0.00 4.40
361 920 5.449588 CCTTATTGAGCCAGTAATTGCAGTG 60.450 44.000 0.00 0.00 0.00 3.66
362 921 2.857186 TGAGCCAGTAATTGCAGTGA 57.143 45.000 0.00 0.00 0.00 3.41
363 922 3.354948 TGAGCCAGTAATTGCAGTGAT 57.645 42.857 0.00 0.00 0.00 3.06
364 923 3.273434 TGAGCCAGTAATTGCAGTGATC 58.727 45.455 0.00 0.00 0.00 2.92
365 924 2.283298 AGCCAGTAATTGCAGTGATCG 58.717 47.619 0.00 0.00 0.00 3.69
366 925 2.009774 GCCAGTAATTGCAGTGATCGT 58.990 47.619 0.00 0.00 0.00 3.73
367 926 2.223112 GCCAGTAATTGCAGTGATCGTG 60.223 50.000 0.00 0.00 0.00 4.35
368 927 3.261580 CCAGTAATTGCAGTGATCGTGA 58.738 45.455 0.00 0.00 0.00 4.35
369 928 3.308053 CCAGTAATTGCAGTGATCGTGAG 59.692 47.826 0.00 0.00 0.00 3.51
370 929 3.928992 CAGTAATTGCAGTGATCGTGAGT 59.071 43.478 0.00 0.00 0.00 3.41
371 930 3.928992 AGTAATTGCAGTGATCGTGAGTG 59.071 43.478 0.00 0.00 0.00 3.51
372 931 2.462456 ATTGCAGTGATCGTGAGTGT 57.538 45.000 0.00 0.00 0.00 3.55
373 932 1.501169 TTGCAGTGATCGTGAGTGTG 58.499 50.000 0.00 0.00 0.00 3.82
374 933 0.389025 TGCAGTGATCGTGAGTGTGT 59.611 50.000 0.00 0.00 0.00 3.72
375 934 0.786581 GCAGTGATCGTGAGTGTGTG 59.213 55.000 0.00 0.00 0.00 3.82
376 935 1.602920 GCAGTGATCGTGAGTGTGTGA 60.603 52.381 0.00 0.00 0.00 3.58
377 936 2.323059 CAGTGATCGTGAGTGTGTGAG 58.677 52.381 0.00 0.00 0.00 3.51
378 937 1.270826 AGTGATCGTGAGTGTGTGAGG 59.729 52.381 0.00 0.00 0.00 3.86
379 938 1.000163 GTGATCGTGAGTGTGTGAGGT 60.000 52.381 0.00 0.00 0.00 3.85
380 939 1.686587 TGATCGTGAGTGTGTGAGGTT 59.313 47.619 0.00 0.00 0.00 3.50
381 940 2.288213 TGATCGTGAGTGTGTGAGGTTC 60.288 50.000 0.00 0.00 0.00 3.62
382 941 0.387929 TCGTGAGTGTGTGAGGTTCC 59.612 55.000 0.00 0.00 0.00 3.62
383 942 0.389391 CGTGAGTGTGTGAGGTTCCT 59.611 55.000 0.00 0.00 0.00 3.36
384 943 1.603172 CGTGAGTGTGTGAGGTTCCTC 60.603 57.143 11.53 11.53 0.00 3.71
385 944 1.412710 GTGAGTGTGTGAGGTTCCTCA 59.587 52.381 16.47 16.47 40.34 3.86
386 945 2.115427 TGAGTGTGTGAGGTTCCTCAA 58.885 47.619 21.13 10.36 43.59 3.02
387 946 2.705658 TGAGTGTGTGAGGTTCCTCAAT 59.294 45.455 21.13 7.17 43.59 2.57
397 956 4.849810 TGAGGTTCCTCAATTTCCTTCCTA 59.150 41.667 17.85 0.00 39.76 2.94
403 963 7.202232 GGTTCCTCAATTTCCTTCCTATAGGAT 60.202 40.741 22.30 3.29 43.66 3.24
488 1058 6.751514 AAAATCATTAAGTCCACACGCATA 57.248 33.333 0.00 0.00 0.00 3.14
494 1064 0.613260 AGTCCACACGCATACACCAT 59.387 50.000 0.00 0.00 0.00 3.55
496 1066 1.130373 GTCCACACGCATACACCATTG 59.870 52.381 0.00 0.00 0.00 2.82
586 1183 4.160642 TGATCCAACTGATGAATCTGGG 57.839 45.455 0.00 0.00 32.41 4.45
646 1244 1.167155 GCCCTCGATCGTAGCTCTCA 61.167 60.000 15.94 0.00 0.00 3.27
707 1317 4.388773 CCGTGAACAGATCGAGATTTTTCA 59.611 41.667 0.00 0.00 0.00 2.69
710 1320 6.183360 CGTGAACAGATCGAGATTTTTCATGA 60.183 38.462 10.84 0.00 32.58 3.07
711 1321 6.958193 GTGAACAGATCGAGATTTTTCATGAC 59.042 38.462 0.00 0.00 0.00 3.06
922 2674 2.894387 GAGGATCCGTGCAGCAGC 60.894 66.667 5.98 0.00 42.57 5.25
989 2781 1.144136 CAGAGAGATCGATCGAGCGA 58.856 55.000 29.17 29.17 45.22 4.93
992 2784 2.811431 AGAGAGATCGATCGAGCGAATT 59.189 45.455 30.63 20.31 44.22 2.17
1035 2827 1.251527 TTCTTCTCGCCGCTCTCCTT 61.252 55.000 0.00 0.00 0.00 3.36
1045 2837 2.650116 GCTCTCCTTGTCCTCGCCA 61.650 63.158 0.00 0.00 0.00 5.69
1174 2974 0.539986 GCCATTCCCGAGTAAGGACA 59.460 55.000 0.00 0.00 31.50 4.02
1180 2980 0.249073 CCCGAGTAAGGACATCTGCG 60.249 60.000 0.00 0.00 0.00 5.18
1181 2981 0.872021 CCGAGTAAGGACATCTGCGC 60.872 60.000 0.00 0.00 0.00 6.09
1182 2982 0.179137 CGAGTAAGGACATCTGCGCA 60.179 55.000 10.98 10.98 0.00 6.09
1183 2983 1.536922 CGAGTAAGGACATCTGCGCAT 60.537 52.381 12.24 0.00 0.00 4.73
1184 2984 2.287608 CGAGTAAGGACATCTGCGCATA 60.288 50.000 12.24 3.38 0.00 3.14
1185 2985 3.312828 GAGTAAGGACATCTGCGCATAG 58.687 50.000 12.24 6.42 0.00 2.23
1206 3479 2.354821 GCCACCGAACCTAAGCAATTAG 59.645 50.000 0.00 0.00 0.00 1.73
1207 3480 3.606687 CCACCGAACCTAAGCAATTAGT 58.393 45.455 0.00 0.00 0.00 2.24
1208 3481 4.761975 CCACCGAACCTAAGCAATTAGTA 58.238 43.478 0.00 0.00 0.00 1.82
1210 3483 5.236478 CCACCGAACCTAAGCAATTAGTATG 59.764 44.000 0.00 0.00 0.00 2.39
1211 3484 5.815740 CACCGAACCTAAGCAATTAGTATGT 59.184 40.000 0.00 0.00 0.00 2.29
1295 3576 1.078214 CCGTGATGTGATGGCCAGT 60.078 57.895 13.05 0.00 0.00 4.00
1296 3577 0.177836 CCGTGATGTGATGGCCAGTA 59.822 55.000 13.05 0.00 0.00 2.74
1328 3609 1.804746 CGCAGCGGAACATACACCATA 60.805 52.381 7.00 0.00 0.00 2.74
1469 3750 2.978824 GCACCGGTTCAGCTCCTA 59.021 61.111 2.97 0.00 0.00 2.94
1484 3771 2.766828 GCTCCTAGGTATTGACAGTGGT 59.233 50.000 9.08 0.00 0.00 4.16
1589 3894 5.324409 GGCATCCTTAACATCATCCCATTA 58.676 41.667 0.00 0.00 0.00 1.90
1701 4009 2.949644 GCCAACCTACCAATGTATCCAC 59.050 50.000 0.00 0.00 0.00 4.02
1839 4230 5.851177 GTGATCGATGTTCGTTTGTGAAAAT 59.149 36.000 0.54 0.00 41.35 1.82
1844 4235 8.041395 TCGATGTTCGTTTGTGAAAATTAAAC 57.959 30.769 0.00 0.00 41.35 2.01
1936 4330 0.827925 TCAGCTCACTTCTCCGTGGT 60.828 55.000 0.00 0.00 35.63 4.16
1937 4331 0.888619 CAGCTCACTTCTCCGTGGTA 59.111 55.000 0.00 0.00 35.63 3.25
1938 4332 1.478510 CAGCTCACTTCTCCGTGGTAT 59.521 52.381 0.00 0.00 35.63 2.73
1939 4333 2.688446 CAGCTCACTTCTCCGTGGTATA 59.312 50.000 0.00 0.00 35.63 1.47
2005 4399 3.752665 AGATGATAGCAGGCCATTCTTG 58.247 45.455 5.01 0.00 0.00 3.02
2362 4756 2.575993 CCTCTCTGGCGACACAGG 59.424 66.667 0.00 0.00 38.98 4.00
2363 4757 2.575993 CTCTCTGGCGACACAGGG 59.424 66.667 0.00 0.00 40.39 4.45
2364 4758 2.997315 TCTCTGGCGACACAGGGG 60.997 66.667 0.00 0.00 39.47 4.79
2365 4759 4.767255 CTCTGGCGACACAGGGGC 62.767 72.222 0.00 0.00 38.98 5.80
2371 4765 4.436998 CGACACAGGGGCGACTCC 62.437 72.222 0.00 0.00 0.00 3.85
2410 4804 4.776322 CGGCGGGCTCCAATGACA 62.776 66.667 0.00 0.00 0.00 3.58
2411 4805 2.825836 GGCGGGCTCCAATGACAG 60.826 66.667 0.00 0.00 0.00 3.51
2412 4806 3.512516 GCGGGCTCCAATGACAGC 61.513 66.667 0.00 0.00 34.65 4.40
2413 4807 2.046023 CGGGCTCCAATGACAGCA 60.046 61.111 6.51 0.00 37.38 4.41
2414 4808 2.110967 CGGGCTCCAATGACAGCAG 61.111 63.158 6.51 0.00 37.38 4.24
2415 4809 2.413142 GGGCTCCAATGACAGCAGC 61.413 63.158 6.51 0.00 37.38 5.25
2416 4810 2.758089 GGCTCCAATGACAGCAGCG 61.758 63.158 6.51 0.00 37.38 5.18
2417 4811 2.758089 GCTCCAATGACAGCAGCGG 61.758 63.158 0.00 0.00 35.56 5.52
2418 4812 2.747460 TCCAATGACAGCAGCGGC 60.747 61.111 0.00 0.00 41.61 6.53
2419 4813 3.057548 CCAATGACAGCAGCGGCA 61.058 61.111 12.44 0.00 44.61 5.69
2420 4814 2.483745 CAATGACAGCAGCGGCAG 59.516 61.111 12.44 5.49 44.61 4.85
2421 4815 2.749044 AATGACAGCAGCGGCAGG 60.749 61.111 12.44 5.23 44.61 4.85
2422 4816 4.790962 ATGACAGCAGCGGCAGGG 62.791 66.667 12.44 2.47 44.61 4.45
2461 4855 3.330720 CCCAGTTCTCCCGGCCTT 61.331 66.667 0.00 0.00 0.00 4.35
2462 4856 2.269241 CCAGTTCTCCCGGCCTTC 59.731 66.667 0.00 0.00 0.00 3.46
2463 4857 2.592993 CCAGTTCTCCCGGCCTTCA 61.593 63.158 0.00 0.00 0.00 3.02
2464 4858 1.604378 CAGTTCTCCCGGCCTTCAT 59.396 57.895 0.00 0.00 0.00 2.57
2465 4859 0.745845 CAGTTCTCCCGGCCTTCATG 60.746 60.000 0.00 0.00 0.00 3.07
2466 4860 1.452108 GTTCTCCCGGCCTTCATGG 60.452 63.158 0.00 0.00 39.35 3.66
2475 4869 3.443045 CCTTCATGGCGTGGTGGC 61.443 66.667 6.90 0.00 45.12 5.01
2482 4876 3.977244 GGCGTGGTGGCAACTTGG 61.977 66.667 3.27 0.00 44.08 3.61
2483 4877 4.645921 GCGTGGTGGCAACTTGGC 62.646 66.667 3.27 8.38 44.03 4.52
2491 4885 4.430423 GCAACTTGGCGACGCGAG 62.430 66.667 15.93 16.09 0.00 5.03
2492 4886 4.430423 CAACTTGGCGACGCGAGC 62.430 66.667 15.93 18.27 0.00 5.03
2493 4887 4.664677 AACTTGGCGACGCGAGCT 62.665 61.111 24.56 2.83 34.52 4.09
2500 4894 4.965858 CGACGCGAGCTCCCGATC 62.966 72.222 26.47 17.52 0.00 3.69
2501 4895 3.587933 GACGCGAGCTCCCGATCT 61.588 66.667 26.47 4.88 0.00 2.75
2502 4896 3.815569 GACGCGAGCTCCCGATCTG 62.816 68.421 26.47 2.88 0.00 2.90
2513 4907 4.514577 CGATCTGCGGGCTTCGGT 62.515 66.667 0.00 0.00 39.69 4.69
2514 4908 2.892425 GATCTGCGGGCTTCGGTG 60.892 66.667 0.00 0.00 39.69 4.94
2515 4909 4.473520 ATCTGCGGGCTTCGGTGG 62.474 66.667 0.00 0.00 39.69 4.61
2534 4928 4.796495 GGGGTGTGGCGATGGTCC 62.796 72.222 0.00 0.00 0.00 4.46
2535 4929 3.717294 GGGTGTGGCGATGGTCCT 61.717 66.667 0.00 0.00 0.00 3.85
2536 4930 2.351276 GGTGTGGCGATGGTCCTT 59.649 61.111 0.00 0.00 0.00 3.36
2537 4931 2.040544 GGTGTGGCGATGGTCCTTG 61.041 63.158 0.00 0.00 0.00 3.61
2538 4932 1.302511 GTGTGGCGATGGTCCTTGT 60.303 57.895 0.00 0.00 0.00 3.16
2539 4933 0.889186 GTGTGGCGATGGTCCTTGTT 60.889 55.000 0.00 0.00 0.00 2.83
2540 4934 0.888736 TGTGGCGATGGTCCTTGTTG 60.889 55.000 0.00 0.00 0.00 3.33
2541 4935 1.303236 TGGCGATGGTCCTTGTTGG 60.303 57.895 0.00 0.00 37.10 3.77
2542 4936 2.046285 GGCGATGGTCCTTGTTGGG 61.046 63.158 0.00 0.00 36.20 4.12
2543 4937 2.700773 GCGATGGTCCTTGTTGGGC 61.701 63.158 0.00 0.00 40.45 5.36
2544 4938 2.398554 CGATGGTCCTTGTTGGGCG 61.399 63.158 0.00 0.00 42.62 6.13
2545 4939 2.035626 ATGGTCCTTGTTGGGCGG 59.964 61.111 0.00 0.00 42.62 6.13
2546 4940 4.966787 TGGTCCTTGTTGGGCGGC 62.967 66.667 0.00 0.00 42.62 6.53
2547 4941 4.660938 GGTCCTTGTTGGGCGGCT 62.661 66.667 9.56 0.00 42.62 5.52
2548 4942 2.349755 GTCCTTGTTGGGCGGCTA 59.650 61.111 9.56 0.00 36.20 3.93
2549 4943 1.745489 GTCCTTGTTGGGCGGCTAG 60.745 63.158 9.56 0.00 36.20 3.42
2550 4944 2.221299 TCCTTGTTGGGCGGCTAGT 61.221 57.895 9.56 0.00 36.20 2.57
2551 4945 0.905809 TCCTTGTTGGGCGGCTAGTA 60.906 55.000 9.56 0.00 36.20 1.82
2552 4946 0.035820 CCTTGTTGGGCGGCTAGTAA 60.036 55.000 9.56 0.93 0.00 2.24
2553 4947 1.369625 CTTGTTGGGCGGCTAGTAAG 58.630 55.000 9.56 7.56 0.00 2.34
2554 4948 0.035820 TTGTTGGGCGGCTAGTAAGG 60.036 55.000 9.56 0.00 0.00 2.69
2555 4949 1.153229 GTTGGGCGGCTAGTAAGGG 60.153 63.158 9.56 0.00 0.00 3.95
2556 4950 3.038945 TTGGGCGGCTAGTAAGGGC 62.039 63.158 9.56 0.00 0.00 5.19
2557 4951 3.162154 GGGCGGCTAGTAAGGGCT 61.162 66.667 9.56 0.00 0.00 5.19
2558 4952 2.109181 GGCGGCTAGTAAGGGCTG 59.891 66.667 0.00 0.00 37.83 4.85
2559 4953 2.109181 GCGGCTAGTAAGGGCTGG 59.891 66.667 0.00 0.00 35.57 4.85
2560 4954 2.109181 CGGCTAGTAAGGGCTGGC 59.891 66.667 0.00 0.00 41.42 4.85
2561 4955 2.109181 GGCTAGTAAGGGCTGGCG 59.891 66.667 0.00 0.00 42.79 5.69
2562 4956 2.432300 GGCTAGTAAGGGCTGGCGA 61.432 63.158 0.00 0.00 42.79 5.54
2563 4957 1.227292 GCTAGTAAGGGCTGGCGAC 60.227 63.158 0.00 0.00 33.52 5.19
2564 4958 1.065928 CTAGTAAGGGCTGGCGACG 59.934 63.158 0.00 0.00 0.00 5.12
2565 4959 2.955751 CTAGTAAGGGCTGGCGACGC 62.956 65.000 12.43 12.43 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.972471 GGGCTTTTGGGATGGAGTGG 60.972 60.000 0.00 0.00 0.00 4.00
58 62 2.108168 CGGGAGGAGGTCATGACTAAA 58.892 52.381 24.50 0.00 0.00 1.85
61 65 0.629596 TACGGGAGGAGGTCATGACT 59.370 55.000 24.50 11.25 0.00 3.41
68 72 1.265454 CCTTGCTTACGGGAGGAGGT 61.265 60.000 0.00 0.00 0.00 3.85
135 694 1.666189 GAACCGGCAAATGTAGAGCTC 59.334 52.381 5.27 5.27 0.00 4.09
136 695 1.003118 TGAACCGGCAAATGTAGAGCT 59.997 47.619 0.00 0.00 0.00 4.09
137 696 1.448985 TGAACCGGCAAATGTAGAGC 58.551 50.000 0.00 0.00 0.00 4.09
138 697 3.009723 ACATGAACCGGCAAATGTAGAG 58.990 45.455 13.21 0.00 31.63 2.43
139 698 3.006940 GACATGAACCGGCAAATGTAGA 58.993 45.455 14.45 0.00 33.51 2.59
140 699 2.746904 TGACATGAACCGGCAAATGTAG 59.253 45.455 14.45 0.00 33.51 2.74
141 700 2.486203 GTGACATGAACCGGCAAATGTA 59.514 45.455 14.45 3.83 33.51 2.29
142 701 1.269448 GTGACATGAACCGGCAAATGT 59.731 47.619 14.39 14.39 36.00 2.71
143 702 1.728825 CGTGACATGAACCGGCAAATG 60.729 52.381 0.00 5.22 0.00 2.32
144 703 0.521291 CGTGACATGAACCGGCAAAT 59.479 50.000 0.00 0.00 0.00 2.32
145 704 1.945522 CGTGACATGAACCGGCAAA 59.054 52.632 0.00 0.00 0.00 3.68
146 705 2.612567 GCGTGACATGAACCGGCAA 61.613 57.895 0.00 0.00 0.00 4.52
147 706 3.047280 GCGTGACATGAACCGGCA 61.047 61.111 0.00 0.00 0.00 5.69
148 707 2.325082 AAGCGTGACATGAACCGGC 61.325 57.895 0.00 0.00 0.00 6.13
149 708 1.497278 CAAGCGTGACATGAACCGG 59.503 57.895 0.00 0.00 0.00 5.28
150 709 1.154413 GCAAGCGTGACATGAACCG 60.154 57.895 2.99 0.00 0.00 4.44
151 710 1.210155 GGCAAGCGTGACATGAACC 59.790 57.895 2.99 0.00 30.49 3.62
152 711 0.110056 CTGGCAAGCGTGACATGAAC 60.110 55.000 9.15 0.00 43.72 3.18
153 712 1.236616 CCTGGCAAGCGTGACATGAA 61.237 55.000 9.15 0.00 43.72 2.57
154 713 1.672030 CCTGGCAAGCGTGACATGA 60.672 57.895 9.15 0.00 43.72 3.07
155 714 1.236616 TTCCTGGCAAGCGTGACATG 61.237 55.000 9.15 6.52 43.72 3.21
156 715 0.537143 TTTCCTGGCAAGCGTGACAT 60.537 50.000 9.15 0.00 43.72 3.06
157 716 0.749818 TTTTCCTGGCAAGCGTGACA 60.750 50.000 8.24 8.24 41.98 3.58
158 717 0.317854 GTTTTCCTGGCAAGCGTGAC 60.318 55.000 2.99 0.00 0.00 3.67
159 718 0.465460 AGTTTTCCTGGCAAGCGTGA 60.465 50.000 2.99 0.00 0.00 4.35
160 719 0.318107 CAGTTTTCCTGGCAAGCGTG 60.318 55.000 0.00 0.00 37.54 5.34
161 720 0.465460 TCAGTTTTCCTGGCAAGCGT 60.465 50.000 0.00 0.00 41.83 5.07
162 721 0.667993 TTCAGTTTTCCTGGCAAGCG 59.332 50.000 0.00 0.00 41.83 4.68
163 722 1.683385 ACTTCAGTTTTCCTGGCAAGC 59.317 47.619 0.00 0.00 41.83 4.01
164 723 3.381272 TGAACTTCAGTTTTCCTGGCAAG 59.619 43.478 0.00 0.00 41.83 4.01
165 724 3.360867 TGAACTTCAGTTTTCCTGGCAA 58.639 40.909 0.00 0.00 41.83 4.52
166 725 2.951642 CTGAACTTCAGTTTTCCTGGCA 59.048 45.455 10.27 0.00 41.83 4.92
167 726 3.632855 CTGAACTTCAGTTTTCCTGGC 57.367 47.619 10.27 0.00 41.83 4.85
178 737 2.995939 CTGCATCGCTAACTGAACTTCA 59.004 45.455 0.00 0.00 0.00 3.02
179 738 2.222908 GCTGCATCGCTAACTGAACTTC 60.223 50.000 0.00 0.00 0.00 3.01
180 739 1.734465 GCTGCATCGCTAACTGAACTT 59.266 47.619 0.00 0.00 0.00 2.66
181 740 1.338105 TGCTGCATCGCTAACTGAACT 60.338 47.619 0.00 0.00 0.00 3.01
182 741 1.078709 TGCTGCATCGCTAACTGAAC 58.921 50.000 0.00 0.00 0.00 3.18
183 742 1.733912 CTTGCTGCATCGCTAACTGAA 59.266 47.619 1.84 0.00 0.00 3.02
184 743 1.066929 TCTTGCTGCATCGCTAACTGA 60.067 47.619 1.84 0.00 0.00 3.41
185 744 1.326852 CTCTTGCTGCATCGCTAACTG 59.673 52.381 1.84 0.00 0.00 3.16
186 745 1.649664 CTCTTGCTGCATCGCTAACT 58.350 50.000 1.84 0.00 0.00 2.24
187 746 0.027324 GCTCTTGCTGCATCGCTAAC 59.973 55.000 1.84 0.00 36.03 2.34
188 747 2.387309 GCTCTTGCTGCATCGCTAA 58.613 52.632 1.84 0.00 36.03 3.09
189 748 4.115279 GCTCTTGCTGCATCGCTA 57.885 55.556 1.84 0.00 36.03 4.26
199 758 6.725246 TGTTTTTCAGTTAACTAGCTCTTGC 58.275 36.000 8.04 0.00 40.05 4.01
200 759 7.805071 CCATGTTTTTCAGTTAACTAGCTCTTG 59.195 37.037 8.04 5.91 0.00 3.02
201 760 7.522236 GCCATGTTTTTCAGTTAACTAGCTCTT 60.522 37.037 8.04 0.00 0.00 2.85
202 761 6.072452 GCCATGTTTTTCAGTTAACTAGCTCT 60.072 38.462 8.04 0.00 0.00 4.09
203 762 6.086871 GCCATGTTTTTCAGTTAACTAGCTC 58.913 40.000 8.04 0.00 0.00 4.09
204 763 5.048013 GGCCATGTTTTTCAGTTAACTAGCT 60.048 40.000 8.04 0.00 0.00 3.32
205 764 5.161358 GGCCATGTTTTTCAGTTAACTAGC 58.839 41.667 8.04 0.00 0.00 3.42
206 765 5.180492 TCGGCCATGTTTTTCAGTTAACTAG 59.820 40.000 8.04 3.38 0.00 2.57
207 766 5.064558 TCGGCCATGTTTTTCAGTTAACTA 58.935 37.500 8.04 0.00 0.00 2.24
208 767 3.886505 TCGGCCATGTTTTTCAGTTAACT 59.113 39.130 2.24 1.12 0.00 2.24
209 768 4.231718 TCGGCCATGTTTTTCAGTTAAC 57.768 40.909 2.24 0.00 0.00 2.01
210 769 4.339814 ACTTCGGCCATGTTTTTCAGTTAA 59.660 37.500 2.24 0.00 0.00 2.01
211 770 3.886505 ACTTCGGCCATGTTTTTCAGTTA 59.113 39.130 2.24 0.00 0.00 2.24
212 771 2.693074 ACTTCGGCCATGTTTTTCAGTT 59.307 40.909 2.24 0.00 0.00 3.16
213 772 2.293399 GACTTCGGCCATGTTTTTCAGT 59.707 45.455 2.24 0.00 0.00 3.41
214 773 2.351738 GGACTTCGGCCATGTTTTTCAG 60.352 50.000 2.24 0.00 0.00 3.02
215 774 1.611491 GGACTTCGGCCATGTTTTTCA 59.389 47.619 2.24 0.00 0.00 2.69
216 775 1.067846 GGGACTTCGGCCATGTTTTTC 60.068 52.381 2.24 0.00 0.00 2.29
217 776 0.966179 GGGACTTCGGCCATGTTTTT 59.034 50.000 2.24 0.00 0.00 1.94
218 777 0.178975 TGGGACTTCGGCCATGTTTT 60.179 50.000 2.24 0.00 0.00 2.43
219 778 0.039618 ATGGGACTTCGGCCATGTTT 59.960 50.000 2.24 0.00 0.00 2.83
220 779 0.039618 AATGGGACTTCGGCCATGTT 59.960 50.000 2.24 0.00 0.00 2.71
221 780 0.680921 CAATGGGACTTCGGCCATGT 60.681 55.000 2.24 0.00 0.00 3.21
222 781 2.008268 GCAATGGGACTTCGGCCATG 62.008 60.000 2.24 0.00 0.00 3.66
223 782 1.754234 GCAATGGGACTTCGGCCAT 60.754 57.895 2.24 0.00 0.00 4.40
224 783 2.361104 GCAATGGGACTTCGGCCA 60.361 61.111 2.24 0.00 0.00 5.36
225 784 1.657751 GAAGCAATGGGACTTCGGCC 61.658 60.000 0.00 0.00 33.56 6.13
226 785 0.678048 AGAAGCAATGGGACTTCGGC 60.678 55.000 0.00 0.00 45.56 5.54
227 786 1.373570 GAGAAGCAATGGGACTTCGG 58.626 55.000 0.00 0.00 45.56 4.30
228 787 1.002366 CGAGAAGCAATGGGACTTCG 58.998 55.000 0.00 0.00 45.56 3.79
229 788 1.066143 TCCGAGAAGCAATGGGACTTC 60.066 52.381 0.00 0.00 42.13 3.01
230 789 0.984230 TCCGAGAAGCAATGGGACTT 59.016 50.000 0.00 0.00 0.00 3.01
231 790 0.250513 GTCCGAGAAGCAATGGGACT 59.749 55.000 8.96 0.00 41.05 3.85
232 791 0.744771 GGTCCGAGAAGCAATGGGAC 60.745 60.000 8.03 8.03 42.87 4.46
233 792 1.198094 TGGTCCGAGAAGCAATGGGA 61.198 55.000 0.00 0.00 0.00 4.37
234 793 0.745845 CTGGTCCGAGAAGCAATGGG 60.746 60.000 0.00 0.00 0.00 4.00
235 794 1.372087 GCTGGTCCGAGAAGCAATGG 61.372 60.000 0.00 0.00 36.91 3.16
236 795 1.372087 GGCTGGTCCGAGAAGCAATG 61.372 60.000 1.69 0.00 38.73 2.82
237 796 1.078143 GGCTGGTCCGAGAAGCAAT 60.078 57.895 1.69 0.00 38.73 3.56
238 797 2.347490 GGCTGGTCCGAGAAGCAA 59.653 61.111 1.69 0.00 38.73 3.91
239 798 2.922503 TGGCTGGTCCGAGAAGCA 60.923 61.111 1.69 0.00 38.73 3.91
240 799 2.125350 CTGGCTGGTCCGAGAAGC 60.125 66.667 0.00 0.00 37.80 3.86
241 800 2.125350 GCTGGCTGGTCCGAGAAG 60.125 66.667 0.00 0.00 37.80 2.85
242 801 2.604686 AGCTGGCTGGTCCGAGAA 60.605 61.111 0.00 0.00 37.80 2.87
243 802 3.385384 CAGCTGGCTGGTCCGAGA 61.385 66.667 14.11 0.00 40.17 4.04
244 803 3.368190 CTCAGCTGGCTGGTCCGAG 62.368 68.421 20.41 8.03 43.75 4.63
245 804 3.385384 CTCAGCTGGCTGGTCCGA 61.385 66.667 20.41 2.27 43.75 4.55
246 805 3.245668 AACTCAGCTGGCTGGTCCG 62.246 63.158 20.41 10.40 43.75 4.79
247 806 1.376553 GAACTCAGCTGGCTGGTCC 60.377 63.158 20.41 4.14 43.75 4.46
248 807 0.035630 ATGAACTCAGCTGGCTGGTC 60.036 55.000 20.41 12.92 43.75 4.02
249 808 0.322277 CATGAACTCAGCTGGCTGGT 60.322 55.000 20.41 14.55 43.75 4.00
250 809 1.030488 CCATGAACTCAGCTGGCTGG 61.030 60.000 20.41 13.99 43.75 4.85
251 810 0.322277 ACCATGAACTCAGCTGGCTG 60.322 55.000 15.13 15.58 44.86 4.85
252 811 0.035630 GACCATGAACTCAGCTGGCT 60.036 55.000 15.13 0.00 30.95 4.75
253 812 0.321919 TGACCATGAACTCAGCTGGC 60.322 55.000 15.13 1.87 30.95 4.85
254 813 2.414994 ATGACCATGAACTCAGCTGG 57.585 50.000 15.13 7.28 33.39 4.85
255 814 3.340928 TCAATGACCATGAACTCAGCTG 58.659 45.455 7.63 7.63 0.00 4.24
256 815 3.708403 TCAATGACCATGAACTCAGCT 57.292 42.857 0.00 0.00 0.00 4.24
257 816 4.978083 AATCAATGACCATGAACTCAGC 57.022 40.909 0.00 0.00 0.00 4.26
258 817 5.184479 ACCAAATCAATGACCATGAACTCAG 59.816 40.000 0.00 0.00 0.00 3.35
259 818 5.078949 ACCAAATCAATGACCATGAACTCA 58.921 37.500 0.00 0.00 0.00 3.41
260 819 5.649782 ACCAAATCAATGACCATGAACTC 57.350 39.130 0.00 0.00 0.00 3.01
261 820 6.350445 GCTAACCAAATCAATGACCATGAACT 60.350 38.462 0.00 0.00 0.00 3.01
262 821 5.807011 GCTAACCAAATCAATGACCATGAAC 59.193 40.000 0.00 0.00 0.00 3.18
263 822 5.479724 TGCTAACCAAATCAATGACCATGAA 59.520 36.000 0.00 0.00 0.00 2.57
264 823 5.015515 TGCTAACCAAATCAATGACCATGA 58.984 37.500 0.00 0.00 0.00 3.07
265 824 5.104374 GTGCTAACCAAATCAATGACCATG 58.896 41.667 0.00 0.00 0.00 3.66
266 825 5.018809 AGTGCTAACCAAATCAATGACCAT 58.981 37.500 0.00 0.00 0.00 3.55
267 826 4.406456 AGTGCTAACCAAATCAATGACCA 58.594 39.130 0.00 0.00 0.00 4.02
268 827 5.391312 AAGTGCTAACCAAATCAATGACC 57.609 39.130 0.00 0.00 0.00 4.02
269 828 5.119125 GCAAAGTGCTAACCAAATCAATGAC 59.881 40.000 0.00 0.00 40.96 3.06
270 829 5.221402 TGCAAAGTGCTAACCAAATCAATGA 60.221 36.000 1.43 0.00 45.31 2.57
271 830 4.989797 TGCAAAGTGCTAACCAAATCAATG 59.010 37.500 1.43 0.00 45.31 2.82
272 831 5.212532 TGCAAAGTGCTAACCAAATCAAT 57.787 34.783 1.43 0.00 45.31 2.57
273 832 4.662468 TGCAAAGTGCTAACCAAATCAA 57.338 36.364 1.43 0.00 45.31 2.57
274 833 4.662468 TTGCAAAGTGCTAACCAAATCA 57.338 36.364 0.00 0.00 45.31 2.57
282 841 2.757868 ACCTGTGTTTGCAAAGTGCTAA 59.242 40.909 13.26 0.00 45.31 3.09
283 842 2.374184 ACCTGTGTTTGCAAAGTGCTA 58.626 42.857 13.26 0.00 45.31 3.49
284 843 1.185315 ACCTGTGTTTGCAAAGTGCT 58.815 45.000 13.26 0.00 45.31 4.40
285 844 1.926510 GAACCTGTGTTTGCAAAGTGC 59.073 47.619 13.26 1.10 38.26 4.40
286 845 3.181397 CAGAACCTGTGTTTGCAAAGTG 58.819 45.455 13.26 3.08 33.97 3.16
287 846 2.825532 ACAGAACCTGTGTTTGCAAAGT 59.174 40.909 13.26 3.45 43.63 2.66
288 847 3.508744 ACAGAACCTGTGTTTGCAAAG 57.491 42.857 13.26 2.74 43.63 2.77
289 848 5.047660 ACTTTACAGAACCTGTGTTTGCAAA 60.048 36.000 8.05 8.05 45.01 3.68
290 849 4.461081 ACTTTACAGAACCTGTGTTTGCAA 59.539 37.500 9.64 0.00 45.01 4.08
291 850 4.013728 ACTTTACAGAACCTGTGTTTGCA 58.986 39.130 9.64 0.00 45.01 4.08
292 851 4.632538 ACTTTACAGAACCTGTGTTTGC 57.367 40.909 9.64 0.00 45.01 3.68
293 852 6.128007 ACTCAACTTTACAGAACCTGTGTTTG 60.128 38.462 9.64 7.38 45.01 2.93
294 853 5.944007 ACTCAACTTTACAGAACCTGTGTTT 59.056 36.000 9.64 0.00 45.01 2.83
295 854 5.497474 ACTCAACTTTACAGAACCTGTGTT 58.503 37.500 9.64 3.29 45.01 3.32
296 855 5.099042 ACTCAACTTTACAGAACCTGTGT 57.901 39.130 9.64 0.00 45.01 3.72
300 859 9.765795 GCATATATACTCAACTTTACAGAACCT 57.234 33.333 0.00 0.00 0.00 3.50
301 860 9.765795 AGCATATATACTCAACTTTACAGAACC 57.234 33.333 0.00 0.00 0.00 3.62
303 862 9.982651 GGAGCATATATACTCAACTTTACAGAA 57.017 33.333 13.78 0.00 34.48 3.02
304 863 9.143155 TGGAGCATATATACTCAACTTTACAGA 57.857 33.333 13.78 0.00 34.48 3.41
305 864 9.764363 TTGGAGCATATATACTCAACTTTACAG 57.236 33.333 13.78 0.00 34.48 2.74
321 880 8.579863 GCTCAATAAGGTTAAATTGGAGCATAT 58.420 33.333 0.00 0.00 36.86 1.78
322 881 7.014230 GGCTCAATAAGGTTAAATTGGAGCATA 59.986 37.037 11.32 0.00 37.64 3.14
323 882 6.183360 GGCTCAATAAGGTTAAATTGGAGCAT 60.183 38.462 11.32 0.00 37.64 3.79
324 883 5.127031 GGCTCAATAAGGTTAAATTGGAGCA 59.873 40.000 11.32 0.00 37.64 4.26
325 884 5.127031 TGGCTCAATAAGGTTAAATTGGAGC 59.873 40.000 0.00 0.00 36.54 4.70
326 885 6.378280 ACTGGCTCAATAAGGTTAAATTGGAG 59.622 38.462 0.00 0.00 34.52 3.86
327 886 6.252995 ACTGGCTCAATAAGGTTAAATTGGA 58.747 36.000 0.00 0.00 34.52 3.53
328 887 6.530019 ACTGGCTCAATAAGGTTAAATTGG 57.470 37.500 0.00 0.00 34.52 3.16
331 890 8.197439 GCAATTACTGGCTCAATAAGGTTAAAT 58.803 33.333 0.00 0.00 0.00 1.40
332 891 7.177568 TGCAATTACTGGCTCAATAAGGTTAAA 59.822 33.333 0.00 0.00 0.00 1.52
333 892 6.661377 TGCAATTACTGGCTCAATAAGGTTAA 59.339 34.615 0.00 0.00 0.00 2.01
334 893 6.184068 TGCAATTACTGGCTCAATAAGGTTA 58.816 36.000 0.00 0.00 0.00 2.85
335 894 5.016173 TGCAATTACTGGCTCAATAAGGTT 58.984 37.500 0.00 0.00 0.00 3.50
336 895 4.599041 TGCAATTACTGGCTCAATAAGGT 58.401 39.130 0.00 0.00 0.00 3.50
337 896 4.641989 ACTGCAATTACTGGCTCAATAAGG 59.358 41.667 0.00 0.00 0.00 2.69
338 897 5.355071 TCACTGCAATTACTGGCTCAATAAG 59.645 40.000 0.00 0.00 0.00 1.73
339 898 5.252547 TCACTGCAATTACTGGCTCAATAA 58.747 37.500 0.00 0.00 0.00 1.40
340 899 4.842574 TCACTGCAATTACTGGCTCAATA 58.157 39.130 0.00 0.00 0.00 1.90
341 900 3.689347 TCACTGCAATTACTGGCTCAAT 58.311 40.909 0.00 0.00 0.00 2.57
342 901 3.138884 TCACTGCAATTACTGGCTCAA 57.861 42.857 0.00 0.00 0.00 3.02
343 902 2.857186 TCACTGCAATTACTGGCTCA 57.143 45.000 0.00 0.00 0.00 4.26
344 903 2.286294 CGATCACTGCAATTACTGGCTC 59.714 50.000 0.00 0.00 0.00 4.70
345 904 2.283298 CGATCACTGCAATTACTGGCT 58.717 47.619 0.00 0.00 0.00 4.75
346 905 2.009774 ACGATCACTGCAATTACTGGC 58.990 47.619 0.00 0.00 0.00 4.85
347 906 3.261580 TCACGATCACTGCAATTACTGG 58.738 45.455 0.00 0.00 0.00 4.00
348 907 3.928992 ACTCACGATCACTGCAATTACTG 59.071 43.478 0.00 0.00 0.00 2.74
349 908 3.928992 CACTCACGATCACTGCAATTACT 59.071 43.478 0.00 0.00 0.00 2.24
350 909 3.679980 ACACTCACGATCACTGCAATTAC 59.320 43.478 0.00 0.00 0.00 1.89
351 910 3.679502 CACACTCACGATCACTGCAATTA 59.320 43.478 0.00 0.00 0.00 1.40
352 911 2.481568 CACACTCACGATCACTGCAATT 59.518 45.455 0.00 0.00 0.00 2.32
353 912 2.071540 CACACTCACGATCACTGCAAT 58.928 47.619 0.00 0.00 0.00 3.56
354 913 1.202521 ACACACTCACGATCACTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
355 914 0.389025 ACACACTCACGATCACTGCA 59.611 50.000 0.00 0.00 0.00 4.41
356 915 0.786581 CACACACTCACGATCACTGC 59.213 55.000 0.00 0.00 0.00 4.40
357 916 2.323059 CTCACACACTCACGATCACTG 58.677 52.381 0.00 0.00 0.00 3.66
358 917 1.270826 CCTCACACACTCACGATCACT 59.729 52.381 0.00 0.00 0.00 3.41
359 918 1.000163 ACCTCACACACTCACGATCAC 60.000 52.381 0.00 0.00 0.00 3.06
360 919 1.328279 ACCTCACACACTCACGATCA 58.672 50.000 0.00 0.00 0.00 2.92
361 920 2.329379 GAACCTCACACACTCACGATC 58.671 52.381 0.00 0.00 0.00 3.69
362 921 1.000955 GGAACCTCACACACTCACGAT 59.999 52.381 0.00 0.00 0.00 3.73
363 922 0.387929 GGAACCTCACACACTCACGA 59.612 55.000 0.00 0.00 0.00 4.35
364 923 0.389391 AGGAACCTCACACACTCACG 59.611 55.000 0.00 0.00 0.00 4.35
365 924 1.412710 TGAGGAACCTCACACACTCAC 59.587 52.381 18.17 0.00 46.80 3.51
366 925 1.788229 TGAGGAACCTCACACACTCA 58.212 50.000 18.17 0.00 46.80 3.41
375 934 4.308526 AGGAAGGAAATTGAGGAACCTC 57.691 45.455 13.32 13.32 43.01 3.85
376 935 6.101881 CCTATAGGAAGGAAATTGAGGAACCT 59.898 42.308 14.11 0.00 39.15 3.50
377 936 6.101296 TCCTATAGGAAGGAAATTGAGGAACC 59.899 42.308 19.59 0.00 42.83 3.62
378 937 7.138054 TCCTATAGGAAGGAAATTGAGGAAC 57.862 40.000 19.59 0.00 42.83 3.62
403 963 1.428448 CTTGTCAGTCGGATTCGCAA 58.572 50.000 0.00 0.00 36.13 4.85
488 1058 2.672996 GGCGTGCTCCAATGGTGT 60.673 61.111 0.00 0.00 0.00 4.16
586 1183 6.264832 TGTTATTGGCAAATGATGAATCGAC 58.735 36.000 3.01 0.00 0.00 4.20
631 1229 3.357504 TCGTGAGAGCTACGATCGA 57.642 52.632 24.34 4.52 44.65 3.59
646 1244 4.333926 GCCAAGCTAGAGATTTTTGATCGT 59.666 41.667 0.00 0.00 0.00 3.73
916 2668 0.961857 TGTGGTGGCTTATGCTGCTG 60.962 55.000 0.00 0.00 39.59 4.41
917 2669 0.962356 GTGTGGTGGCTTATGCTGCT 60.962 55.000 0.00 0.00 39.59 4.24
918 2670 0.962356 AGTGTGGTGGCTTATGCTGC 60.962 55.000 0.13 0.00 39.59 5.25
919 2671 1.089920 GAGTGTGGTGGCTTATGCTG 58.910 55.000 0.13 0.00 39.59 4.41
920 2672 0.692476 TGAGTGTGGTGGCTTATGCT 59.308 50.000 0.13 0.00 39.59 3.79
921 2673 1.089920 CTGAGTGTGGTGGCTTATGC 58.910 55.000 0.00 0.00 38.76 3.14
922 2674 1.089920 GCTGAGTGTGGTGGCTTATG 58.910 55.000 0.00 0.00 0.00 1.90
923 2675 0.692476 TGCTGAGTGTGGTGGCTTAT 59.308 50.000 0.00 0.00 0.00 1.73
924 2676 0.250295 GTGCTGAGTGTGGTGGCTTA 60.250 55.000 0.00 0.00 0.00 3.09
925 2677 1.526917 GTGCTGAGTGTGGTGGCTT 60.527 57.895 0.00 0.00 0.00 4.35
926 2678 2.111878 GTGCTGAGTGTGGTGGCT 59.888 61.111 0.00 0.00 0.00 4.75
927 2679 2.203195 TGTGCTGAGTGTGGTGGC 60.203 61.111 0.00 0.00 0.00 5.01
928 2680 2.256591 GCTGTGCTGAGTGTGGTGG 61.257 63.158 0.00 0.00 0.00 4.61
1005 2797 2.003196 CGAGAAGAAGGCTCTTGGTC 57.997 55.000 4.31 0.00 42.19 4.02
1035 2827 2.685017 AGGCTGATGGCGAGGACA 60.685 61.111 0.00 0.00 44.18 4.02
1122 2917 1.002624 GTTGATGGAGTTCCCGGCA 60.003 57.895 0.00 0.00 37.93 5.69
1174 2974 2.280389 CGGTGGCTATGCGCAGAT 60.280 61.111 18.32 1.49 41.67 2.90
1180 2980 1.583054 CTTAGGTTCGGTGGCTATGC 58.417 55.000 0.00 0.00 0.00 3.14
1181 2981 1.134521 TGCTTAGGTTCGGTGGCTATG 60.135 52.381 0.00 0.00 0.00 2.23
1182 2982 1.200519 TGCTTAGGTTCGGTGGCTAT 58.799 50.000 0.00 0.00 0.00 2.97
1183 2983 0.978151 TTGCTTAGGTTCGGTGGCTA 59.022 50.000 0.00 0.00 0.00 3.93
1184 2984 0.328258 ATTGCTTAGGTTCGGTGGCT 59.672 50.000 0.00 0.00 0.00 4.75
1185 2985 1.173913 AATTGCTTAGGTTCGGTGGC 58.826 50.000 0.00 0.00 0.00 5.01
1187 2987 5.815740 ACATACTAATTGCTTAGGTTCGGTG 59.184 40.000 0.00 0.00 38.97 4.94
1188 2988 5.985911 ACATACTAATTGCTTAGGTTCGGT 58.014 37.500 0.00 0.00 38.97 4.69
1189 2989 6.537301 TGAACATACTAATTGCTTAGGTTCGG 59.463 38.462 12.02 0.00 38.97 4.30
1191 2991 7.903431 CGTTGAACATACTAATTGCTTAGGTTC 59.097 37.037 10.80 10.80 38.97 3.62
1192 2992 7.389607 ACGTTGAACATACTAATTGCTTAGGTT 59.610 33.333 0.00 0.00 38.97 3.50
1206 3479 6.385537 AATGTAAGACGACGTTGAACATAC 57.614 37.500 10.51 10.57 0.00 2.39
1207 3480 6.089820 GGAAATGTAAGACGACGTTGAACATA 59.910 38.462 10.51 0.00 0.00 2.29
1208 3481 5.107220 GGAAATGTAAGACGACGTTGAACAT 60.107 40.000 10.51 9.32 0.00 2.71
1210 3483 4.446719 AGGAAATGTAAGACGACGTTGAAC 59.553 41.667 10.51 3.26 0.00 3.18
1211 3484 4.624015 AGGAAATGTAAGACGACGTTGAA 58.376 39.130 10.51 0.00 0.00 2.69
1328 3609 2.282887 GTGACCGGGCCCATGTTT 60.283 61.111 24.92 0.00 0.00 2.83
1469 3750 2.236395 GCCACTACCACTGTCAATACCT 59.764 50.000 0.00 0.00 0.00 3.08
1484 3771 4.393155 CCACTGCCGCTGCCACTA 62.393 66.667 0.00 0.00 36.33 2.74
1565 3870 2.158475 TGGGATGATGTTAAGGATGCCC 60.158 50.000 0.00 0.00 0.00 5.36
1589 3894 1.296984 TCTAGACGAGGGAGAAGGGT 58.703 55.000 0.00 0.00 0.00 4.34
1701 4009 0.035056 AAGCGGGGATCTTTGACCAG 60.035 55.000 0.00 0.00 0.00 4.00
1839 4230 7.928307 AGTACTATCACAGACGTAGGTTTAA 57.072 36.000 0.00 0.00 0.00 1.52
1844 4235 6.704937 TCACATAGTACTATCACAGACGTAGG 59.295 42.308 12.62 0.27 0.00 3.18
1937 4331 9.947669 GTTAGACACGACTTTGTACAGATATAT 57.052 33.333 0.00 0.00 0.00 0.86
1938 4332 8.949177 TGTTAGACACGACTTTGTACAGATATA 58.051 33.333 0.00 0.00 0.00 0.86
1939 4333 7.754027 GTGTTAGACACGACTTTGTACAGATAT 59.246 37.037 0.00 0.00 39.53 1.63
1987 4381 2.507058 AGTCAAGAATGGCCTGCTATCA 59.493 45.455 3.32 0.00 0.00 2.15
1989 4383 2.507058 TGAGTCAAGAATGGCCTGCTAT 59.493 45.455 3.32 0.00 0.00 2.97
1992 4386 1.404391 CATGAGTCAAGAATGGCCTGC 59.596 52.381 3.32 0.00 0.00 4.85
1995 4389 2.425143 TCCATGAGTCAAGAATGGCC 57.575 50.000 5.72 0.00 40.62 5.36
2005 4399 8.678199 CCCTAAAAAGAGTTAATTCCATGAGTC 58.322 37.037 0.00 0.00 0.00 3.36
2345 4739 2.575993 CCTGTGTCGCCAGAGAGG 59.424 66.667 0.00 0.00 33.92 3.69
2346 4740 2.575993 CCCTGTGTCGCCAGAGAG 59.424 66.667 0.00 0.00 33.92 3.20
2347 4741 2.997315 CCCCTGTGTCGCCAGAGA 60.997 66.667 0.00 0.00 33.92 3.10
2348 4742 4.767255 GCCCCTGTGTCGCCAGAG 62.767 72.222 0.00 0.00 34.23 3.35
2354 4748 4.436998 GGAGTCGCCCCTGTGTCG 62.437 72.222 0.00 0.00 0.00 4.35
2393 4787 4.776322 TGTCATTGGAGCCCGCCG 62.776 66.667 0.00 0.00 0.00 6.46
2394 4788 2.825836 CTGTCATTGGAGCCCGCC 60.826 66.667 0.00 0.00 0.00 6.13
2395 4789 3.512516 GCTGTCATTGGAGCCCGC 61.513 66.667 0.00 0.00 0.00 6.13
2396 4790 2.046023 TGCTGTCATTGGAGCCCG 60.046 61.111 6.25 0.00 34.04 6.13
2397 4791 2.413142 GCTGCTGTCATTGGAGCCC 61.413 63.158 0.00 0.00 41.93 5.19
2398 4792 2.758089 CGCTGCTGTCATTGGAGCC 61.758 63.158 0.00 0.00 44.29 4.70
2399 4793 2.758089 CCGCTGCTGTCATTGGAGC 61.758 63.158 0.00 0.00 43.82 4.70
2400 4794 2.758089 GCCGCTGCTGTCATTGGAG 61.758 63.158 0.00 0.00 33.53 3.86
2401 4795 2.747460 GCCGCTGCTGTCATTGGA 60.747 61.111 0.00 0.00 33.53 3.53
2402 4796 3.047718 CTGCCGCTGCTGTCATTGG 62.048 63.158 0.70 0.00 38.71 3.16
2403 4797 2.483745 CTGCCGCTGCTGTCATTG 59.516 61.111 0.70 0.00 38.71 2.82
2404 4798 2.749044 CCTGCCGCTGCTGTCATT 60.749 61.111 0.70 0.00 38.71 2.57
2405 4799 4.790962 CCCTGCCGCTGCTGTCAT 62.791 66.667 0.70 0.00 38.71 3.06
2444 4838 3.330720 AAGGCCGGGAGAACTGGG 61.331 66.667 2.18 0.00 46.45 4.45
2446 4840 0.745845 CATGAAGGCCGGGAGAACTG 60.746 60.000 2.18 0.00 0.00 3.16
2447 4841 1.604378 CATGAAGGCCGGGAGAACT 59.396 57.895 2.18 0.00 0.00 3.01
2448 4842 1.452108 CCATGAAGGCCGGGAGAAC 60.452 63.158 2.18 0.00 0.00 3.01
2449 4843 2.998097 CCATGAAGGCCGGGAGAA 59.002 61.111 2.18 0.00 0.00 2.87
2458 4852 3.443045 GCCACCACGCCATGAAGG 61.443 66.667 0.00 0.00 41.84 3.46
2459 4853 2.267351 TTGCCACCACGCCATGAAG 61.267 57.895 0.00 0.00 0.00 3.02
2460 4854 2.203408 TTGCCACCACGCCATGAA 60.203 55.556 0.00 0.00 0.00 2.57
2461 4855 2.974692 AAGTTGCCACCACGCCATGA 62.975 55.000 0.00 0.00 0.00 3.07
2462 4856 2.563798 AAGTTGCCACCACGCCATG 61.564 57.895 0.00 0.00 0.00 3.66
2463 4857 2.203480 AAGTTGCCACCACGCCAT 60.203 55.556 0.00 0.00 0.00 4.40
2464 4858 3.215568 CAAGTTGCCACCACGCCA 61.216 61.111 0.00 0.00 0.00 5.69
2465 4859 3.977244 CCAAGTTGCCACCACGCC 61.977 66.667 0.00 0.00 0.00 5.68
2466 4860 4.645921 GCCAAGTTGCCACCACGC 62.646 66.667 0.00 0.00 0.00 5.34
2467 4861 4.326766 CGCCAAGTTGCCACCACG 62.327 66.667 0.00 0.00 0.00 4.94
2468 4862 2.904866 TCGCCAAGTTGCCACCAC 60.905 61.111 0.00 0.00 0.00 4.16
2469 4863 2.904866 GTCGCCAAGTTGCCACCA 60.905 61.111 0.00 0.00 0.00 4.17
2470 4864 4.025401 CGTCGCCAAGTTGCCACC 62.025 66.667 0.00 0.00 0.00 4.61
2471 4865 4.683334 GCGTCGCCAAGTTGCCAC 62.683 66.667 5.75 0.00 0.00 5.01
2474 4868 4.430423 CTCGCGTCGCCAAGTTGC 62.430 66.667 12.44 0.00 0.00 4.17
2475 4869 4.430423 GCTCGCGTCGCCAAGTTG 62.430 66.667 12.44 0.00 0.00 3.16
2476 4870 4.664677 AGCTCGCGTCGCCAAGTT 62.665 61.111 12.44 4.72 0.00 2.66
2496 4890 4.514577 ACCGAAGCCCGCAGATCG 62.515 66.667 0.00 3.50 36.84 3.69
2497 4891 2.892425 CACCGAAGCCCGCAGATC 60.892 66.667 0.00 0.00 36.84 2.75
2498 4892 4.473520 CCACCGAAGCCCGCAGAT 62.474 66.667 0.00 0.00 36.84 2.90
2517 4911 4.796495 GGACCATCGCCACACCCC 62.796 72.222 0.00 0.00 0.00 4.95
2518 4912 3.268103 AAGGACCATCGCCACACCC 62.268 63.158 0.00 0.00 0.00 4.61
2519 4913 2.040544 CAAGGACCATCGCCACACC 61.041 63.158 0.00 0.00 0.00 4.16
2520 4914 0.889186 AACAAGGACCATCGCCACAC 60.889 55.000 0.00 0.00 0.00 3.82
2521 4915 0.888736 CAACAAGGACCATCGCCACA 60.889 55.000 0.00 0.00 0.00 4.17
2522 4916 1.586154 CCAACAAGGACCATCGCCAC 61.586 60.000 0.00 0.00 41.22 5.01
2523 4917 1.303236 CCAACAAGGACCATCGCCA 60.303 57.895 0.00 0.00 41.22 5.69
2524 4918 2.046285 CCCAACAAGGACCATCGCC 61.046 63.158 0.00 0.00 41.22 5.54
2525 4919 2.700773 GCCCAACAAGGACCATCGC 61.701 63.158 0.00 0.00 41.22 4.58
2526 4920 2.398554 CGCCCAACAAGGACCATCG 61.399 63.158 0.00 0.00 41.22 3.84
2527 4921 2.046285 CCGCCCAACAAGGACCATC 61.046 63.158 0.00 0.00 41.22 3.51
2528 4922 2.035626 CCGCCCAACAAGGACCAT 59.964 61.111 0.00 0.00 41.22 3.55
2529 4923 4.966787 GCCGCCCAACAAGGACCA 62.967 66.667 0.00 0.00 41.22 4.02
2530 4924 3.262448 TAGCCGCCCAACAAGGACC 62.262 63.158 0.00 0.00 41.22 4.46
2531 4925 1.745489 CTAGCCGCCCAACAAGGAC 60.745 63.158 0.00 0.00 41.22 3.85
2532 4926 0.905809 TACTAGCCGCCCAACAAGGA 60.906 55.000 0.00 0.00 41.22 3.36
2533 4927 0.035820 TTACTAGCCGCCCAACAAGG 60.036 55.000 0.00 0.00 37.03 3.61
2534 4928 1.369625 CTTACTAGCCGCCCAACAAG 58.630 55.000 0.00 0.00 0.00 3.16
2535 4929 0.035820 CCTTACTAGCCGCCCAACAA 60.036 55.000 0.00 0.00 0.00 2.83
2536 4930 1.600107 CCTTACTAGCCGCCCAACA 59.400 57.895 0.00 0.00 0.00 3.33
2537 4931 1.153229 CCCTTACTAGCCGCCCAAC 60.153 63.158 0.00 0.00 0.00 3.77
2538 4932 3.038945 GCCCTTACTAGCCGCCCAA 62.039 63.158 0.00 0.00 0.00 4.12
2539 4933 3.476419 GCCCTTACTAGCCGCCCA 61.476 66.667 0.00 0.00 0.00 5.36
2540 4934 3.162154 AGCCCTTACTAGCCGCCC 61.162 66.667 0.00 0.00 0.00 6.13
2541 4935 2.109181 CAGCCCTTACTAGCCGCC 59.891 66.667 0.00 0.00 0.00 6.13
2542 4936 2.109181 CCAGCCCTTACTAGCCGC 59.891 66.667 0.00 0.00 0.00 6.53
2543 4937 2.109181 GCCAGCCCTTACTAGCCG 59.891 66.667 0.00 0.00 0.00 5.52
2544 4938 2.109181 CGCCAGCCCTTACTAGCC 59.891 66.667 0.00 0.00 0.00 3.93
2545 4939 1.227292 GTCGCCAGCCCTTACTAGC 60.227 63.158 0.00 0.00 0.00 3.42
2546 4940 1.065928 CGTCGCCAGCCCTTACTAG 59.934 63.158 0.00 0.00 0.00 2.57
2547 4941 3.072486 GCGTCGCCAGCCCTTACTA 62.072 63.158 5.75 0.00 0.00 1.82
2548 4942 4.452733 GCGTCGCCAGCCCTTACT 62.453 66.667 5.75 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.