Multiple sequence alignment - TraesCS2D01G484400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G484400 chr2D 100.000 1341 0 0 852 2192 585517491 585516151 0.000000e+00 2477.0
1 TraesCS2D01G484400 chr2D 88.700 1292 137 9 895 2180 585477185 585475897 0.000000e+00 1568.0
2 TraesCS2D01G484400 chr2D 86.508 1260 161 9 930 2183 34988048 34989304 0.000000e+00 1376.0
3 TraesCS2D01G484400 chr2D 85.385 1259 176 8 930 2183 34994803 34996058 0.000000e+00 1299.0
4 TraesCS2D01G484400 chr2D 100.000 405 0 0 1 405 585518342 585517938 0.000000e+00 749.0
5 TraesCS2D01G484400 chr2D 100.000 33 0 0 281 313 585477332 585477300 6.530000e-06 62.1
6 TraesCS2D01G484400 chr2A 89.047 1333 138 6 856 2185 719541352 719540025 0.000000e+00 1646.0
7 TraesCS2D01G484400 chr2A 86.338 1259 163 8 930 2182 38309323 38310578 0.000000e+00 1363.0
8 TraesCS2D01G484400 chr2B 87.706 1334 151 10 856 2181 706418557 706417229 0.000000e+00 1543.0
9 TraesCS2D01G484400 chr2B 86.418 1259 164 7 930 2183 57664553 57665809 0.000000e+00 1371.0
10 TraesCS2D01G484400 chr2B 85.306 1259 177 8 930 2183 57672606 57673861 0.000000e+00 1293.0
11 TraesCS2D01G484400 chr2B 93.303 866 51 7 856 1718 705889438 705890299 0.000000e+00 1271.0
12 TraesCS2D01G484400 chr5A 94.340 53 3 0 311 363 330196398 330196346 5.020000e-12 82.4
13 TraesCS2D01G484400 chr7D 100.000 42 0 0 317 358 48841708 48841749 6.490000e-11 78.7
14 TraesCS2D01G484400 chr5D 97.778 45 1 0 316 360 389245500 389245456 6.490000e-11 78.7
15 TraesCS2D01G484400 chr3D 97.778 45 1 0 316 360 167036957 167037001 6.490000e-11 78.7
16 TraesCS2D01G484400 chr7A 95.833 48 1 1 312 358 545928677 545928630 2.330000e-10 76.8
17 TraesCS2D01G484400 chr6B 97.727 44 1 0 317 360 568865798 568865841 2.330000e-10 76.8
18 TraesCS2D01G484400 chr4A 95.652 46 2 0 315 360 261080970 261080925 8.390000e-10 75.0
19 TraesCS2D01G484400 chr3A 92.453 53 3 1 309 360 467098918 467098970 8.390000e-10 75.0
20 TraesCS2D01G484400 chr1D 95.745 47 1 1 311 357 479730251 479730206 8.390000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G484400 chr2D 585516151 585518342 2191 True 1613.00 2477 100.000 1 2192 2 chr2D.!!$R2 2191
1 TraesCS2D01G484400 chr2D 34988048 34989304 1256 False 1376.00 1376 86.508 930 2183 1 chr2D.!!$F1 1253
2 TraesCS2D01G484400 chr2D 34994803 34996058 1255 False 1299.00 1299 85.385 930 2183 1 chr2D.!!$F2 1253
3 TraesCS2D01G484400 chr2D 585475897 585477332 1435 True 815.05 1568 94.350 281 2180 2 chr2D.!!$R1 1899
4 TraesCS2D01G484400 chr2A 719540025 719541352 1327 True 1646.00 1646 89.047 856 2185 1 chr2A.!!$R1 1329
5 TraesCS2D01G484400 chr2A 38309323 38310578 1255 False 1363.00 1363 86.338 930 2182 1 chr2A.!!$F1 1252
6 TraesCS2D01G484400 chr2B 706417229 706418557 1328 True 1543.00 1543 87.706 856 2181 1 chr2B.!!$R1 1325
7 TraesCS2D01G484400 chr2B 57664553 57665809 1256 False 1371.00 1371 86.418 930 2183 1 chr2B.!!$F1 1253
8 TraesCS2D01G484400 chr2B 57672606 57673861 1255 False 1293.00 1293 85.306 930 2183 1 chr2B.!!$F2 1253
9 TraesCS2D01G484400 chr2B 705889438 705890299 861 False 1271.00 1271 93.303 856 1718 1 chr2B.!!$F3 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.242286 AGCAAAACACACAACACGCA 59.758 45.0 0.0 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2089 2100 0.035458 CCTTGATACTCGGGGATGGC 59.965 60.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.306213 GTTTTGGTAGATAGGAAAGAAACTGC 58.694 38.462 0.00 0.00 0.00 4.40
26 27 5.099042 TGGTAGATAGGAAAGAAACTGCC 57.901 43.478 0.00 0.00 0.00 4.85
27 28 4.534500 TGGTAGATAGGAAAGAAACTGCCA 59.466 41.667 0.00 0.00 37.67 4.92
28 29 4.876679 GGTAGATAGGAAAGAAACTGCCAC 59.123 45.833 0.00 0.00 32.16 5.01
29 30 4.917906 AGATAGGAAAGAAACTGCCACT 57.082 40.909 0.00 0.00 0.00 4.00
30 31 6.127140 GGTAGATAGGAAAGAAACTGCCACTA 60.127 42.308 0.00 0.00 32.16 2.74
31 32 6.374417 AGATAGGAAAGAAACTGCCACTAA 57.626 37.500 0.00 0.00 0.00 2.24
32 33 6.174049 AGATAGGAAAGAAACTGCCACTAAC 58.826 40.000 0.00 0.00 0.00 2.34
33 34 3.139077 AGGAAAGAAACTGCCACTAACG 58.861 45.455 0.00 0.00 0.00 3.18
34 35 2.876550 GGAAAGAAACTGCCACTAACGT 59.123 45.455 0.00 0.00 0.00 3.99
35 36 3.314357 GGAAAGAAACTGCCACTAACGTT 59.686 43.478 5.88 5.88 0.00 3.99
36 37 3.963383 AAGAAACTGCCACTAACGTTG 57.037 42.857 11.99 3.57 0.00 4.10
37 38 2.914059 AGAAACTGCCACTAACGTTGT 58.086 42.857 11.99 4.25 0.00 3.32
38 39 3.275999 AGAAACTGCCACTAACGTTGTT 58.724 40.909 11.99 1.28 0.00 2.83
39 40 4.444536 AGAAACTGCCACTAACGTTGTTA 58.555 39.130 11.99 0.00 0.00 2.41
40 41 5.061179 AGAAACTGCCACTAACGTTGTTAT 58.939 37.500 11.99 0.00 0.00 1.89
41 42 5.529800 AGAAACTGCCACTAACGTTGTTATT 59.470 36.000 11.99 0.00 0.00 1.40
42 43 5.761165 AACTGCCACTAACGTTGTTATTT 57.239 34.783 11.99 0.00 0.00 1.40
43 44 5.352643 ACTGCCACTAACGTTGTTATTTC 57.647 39.130 11.99 0.00 0.00 2.17
44 45 4.817464 ACTGCCACTAACGTTGTTATTTCA 59.183 37.500 11.99 0.00 0.00 2.69
45 46 5.297278 ACTGCCACTAACGTTGTTATTTCAA 59.703 36.000 11.99 0.00 0.00 2.69
46 47 6.016610 ACTGCCACTAACGTTGTTATTTCAAT 60.017 34.615 11.99 0.00 0.00 2.57
47 48 6.375377 TGCCACTAACGTTGTTATTTCAATC 58.625 36.000 11.99 0.00 0.00 2.67
48 49 6.017026 TGCCACTAACGTTGTTATTTCAATCA 60.017 34.615 11.99 0.00 0.00 2.57
49 50 6.858993 GCCACTAACGTTGTTATTTCAATCAA 59.141 34.615 11.99 0.00 0.00 2.57
50 51 7.380065 GCCACTAACGTTGTTATTTCAATCAAA 59.620 33.333 11.99 0.00 0.00 2.69
51 52 8.687301 CCACTAACGTTGTTATTTCAATCAAAC 58.313 33.333 11.99 0.00 0.00 2.93
52 53 9.445786 CACTAACGTTGTTATTTCAATCAAACT 57.554 29.630 11.99 0.00 0.00 2.66
53 54 9.659830 ACTAACGTTGTTATTTCAATCAAACTC 57.340 29.630 11.99 0.00 0.00 3.01
54 55 9.878599 CTAACGTTGTTATTTCAATCAAACTCT 57.121 29.630 11.99 0.00 0.00 3.24
56 57 9.581099 AACGTTGTTATTTCAATCAAACTCTTT 57.419 25.926 0.00 0.00 0.00 2.52
57 58 9.019764 ACGTTGTTATTTCAATCAAACTCTTTG 57.980 29.630 0.00 0.00 41.96 2.77
58 59 8.479280 CGTTGTTATTTCAATCAAACTCTTTGG 58.521 33.333 0.00 0.00 40.98 3.28
59 60 9.528018 GTTGTTATTTCAATCAAACTCTTTGGA 57.472 29.630 0.00 0.00 40.98 3.53
60 61 9.528018 TTGTTATTTCAATCAAACTCTTTGGAC 57.472 29.630 0.00 0.00 40.98 4.02
61 62 8.690884 TGTTATTTCAATCAAACTCTTTGGACA 58.309 29.630 0.00 0.00 40.98 4.02
62 63 9.696917 GTTATTTCAATCAAACTCTTTGGACAT 57.303 29.630 0.00 0.00 40.98 3.06
63 64 9.912634 TTATTTCAATCAAACTCTTTGGACATC 57.087 29.630 0.00 0.00 40.98 3.06
64 65 6.957920 TTCAATCAAACTCTTTGGACATCA 57.042 33.333 0.00 0.00 40.98 3.07
65 66 6.564709 TCAATCAAACTCTTTGGACATCAG 57.435 37.500 0.00 0.00 40.98 2.90
66 67 5.048504 TCAATCAAACTCTTTGGACATCAGC 60.049 40.000 0.00 0.00 40.98 4.26
67 68 3.149196 TCAAACTCTTTGGACATCAGCC 58.851 45.455 0.00 0.00 40.98 4.85
68 69 2.206576 AACTCTTTGGACATCAGCCC 57.793 50.000 0.00 0.00 0.00 5.19
69 70 1.067295 ACTCTTTGGACATCAGCCCA 58.933 50.000 0.00 0.00 0.00 5.36
70 71 1.637553 ACTCTTTGGACATCAGCCCAT 59.362 47.619 0.00 0.00 31.66 4.00
71 72 2.295885 CTCTTTGGACATCAGCCCATC 58.704 52.381 0.00 0.00 31.66 3.51
72 73 1.918262 TCTTTGGACATCAGCCCATCT 59.082 47.619 0.00 0.00 31.66 2.90
73 74 2.309755 TCTTTGGACATCAGCCCATCTT 59.690 45.455 0.00 0.00 31.66 2.40
74 75 2.425143 TTGGACATCAGCCCATCTTC 57.575 50.000 0.00 0.00 31.66 2.87
75 76 1.588239 TGGACATCAGCCCATCTTCT 58.412 50.000 0.00 0.00 0.00 2.85
76 77 2.763039 TGGACATCAGCCCATCTTCTA 58.237 47.619 0.00 0.00 0.00 2.10
77 78 2.702478 TGGACATCAGCCCATCTTCTAG 59.298 50.000 0.00 0.00 0.00 2.43
78 79 2.703007 GGACATCAGCCCATCTTCTAGT 59.297 50.000 0.00 0.00 0.00 2.57
79 80 3.135530 GGACATCAGCCCATCTTCTAGTT 59.864 47.826 0.00 0.00 0.00 2.24
80 81 4.376146 GACATCAGCCCATCTTCTAGTTC 58.624 47.826 0.00 0.00 0.00 3.01
81 82 3.135530 ACATCAGCCCATCTTCTAGTTCC 59.864 47.826 0.00 0.00 0.00 3.62
82 83 2.832838 TCAGCCCATCTTCTAGTTCCA 58.167 47.619 0.00 0.00 0.00 3.53
83 84 3.181329 TCAGCCCATCTTCTAGTTCCAA 58.819 45.455 0.00 0.00 0.00 3.53
84 85 3.055094 TCAGCCCATCTTCTAGTTCCAAC 60.055 47.826 0.00 0.00 0.00 3.77
85 86 2.239907 AGCCCATCTTCTAGTTCCAACC 59.760 50.000 0.00 0.00 0.00 3.77
86 87 2.026262 GCCCATCTTCTAGTTCCAACCA 60.026 50.000 0.00 0.00 0.00 3.67
87 88 3.610911 CCCATCTTCTAGTTCCAACCAC 58.389 50.000 0.00 0.00 0.00 4.16
88 89 3.610911 CCATCTTCTAGTTCCAACCACC 58.389 50.000 0.00 0.00 0.00 4.61
89 90 3.610911 CATCTTCTAGTTCCAACCACCC 58.389 50.000 0.00 0.00 0.00 4.61
90 91 2.696775 TCTTCTAGTTCCAACCACCCA 58.303 47.619 0.00 0.00 0.00 4.51
91 92 2.370849 TCTTCTAGTTCCAACCACCCAC 59.629 50.000 0.00 0.00 0.00 4.61
92 93 0.682852 TCTAGTTCCAACCACCCACG 59.317 55.000 0.00 0.00 0.00 4.94
93 94 0.682852 CTAGTTCCAACCACCCACGA 59.317 55.000 0.00 0.00 0.00 4.35
94 95 0.393820 TAGTTCCAACCACCCACGAC 59.606 55.000 0.00 0.00 0.00 4.34
95 96 1.153127 GTTCCAACCACCCACGACA 60.153 57.895 0.00 0.00 0.00 4.35
96 97 1.153127 TTCCAACCACCCACGACAC 60.153 57.895 0.00 0.00 0.00 3.67
97 98 2.926901 TTCCAACCACCCACGACACG 62.927 60.000 0.00 0.00 0.00 4.49
98 99 2.107343 CAACCACCCACGACACGA 59.893 61.111 0.00 0.00 0.00 4.35
99 100 1.521906 CAACCACCCACGACACGAA 60.522 57.895 0.00 0.00 0.00 3.85
100 101 1.090625 CAACCACCCACGACACGAAA 61.091 55.000 0.00 0.00 0.00 3.46
101 102 0.812412 AACCACCCACGACACGAAAG 60.812 55.000 0.00 0.00 0.00 2.62
102 103 2.604174 CCACCCACGACACGAAAGC 61.604 63.158 0.00 0.00 0.00 3.51
103 104 1.594293 CACCCACGACACGAAAGCT 60.594 57.895 0.00 0.00 0.00 3.74
104 105 1.145377 ACCCACGACACGAAAGCTT 59.855 52.632 0.00 0.00 0.00 3.74
105 106 0.878961 ACCCACGACACGAAAGCTTC 60.879 55.000 0.00 0.00 0.00 3.86
106 107 0.600255 CCCACGACACGAAAGCTTCT 60.600 55.000 0.00 0.00 0.00 2.85
107 108 1.217882 CCACGACACGAAAGCTTCTT 58.782 50.000 0.00 0.00 0.00 2.52
108 109 1.192534 CCACGACACGAAAGCTTCTTC 59.807 52.381 0.00 0.00 0.00 2.87
109 110 1.192534 CACGACACGAAAGCTTCTTCC 59.807 52.381 0.00 0.00 0.00 3.46
110 111 0.790814 CGACACGAAAGCTTCTTCCC 59.209 55.000 0.00 0.00 0.00 3.97
111 112 1.605712 CGACACGAAAGCTTCTTCCCT 60.606 52.381 0.00 0.00 0.00 4.20
112 113 2.495084 GACACGAAAGCTTCTTCCCTT 58.505 47.619 0.00 0.00 0.00 3.95
113 114 2.480802 GACACGAAAGCTTCTTCCCTTC 59.519 50.000 0.00 0.00 0.00 3.46
114 115 1.807142 CACGAAAGCTTCTTCCCTTCC 59.193 52.381 0.00 0.00 0.00 3.46
115 116 1.271434 ACGAAAGCTTCTTCCCTTCCC 60.271 52.381 0.00 0.00 0.00 3.97
116 117 1.271379 CGAAAGCTTCTTCCCTTCCCA 60.271 52.381 0.00 0.00 0.00 4.37
117 118 2.814097 CGAAAGCTTCTTCCCTTCCCAA 60.814 50.000 0.00 0.00 0.00 4.12
118 119 3.435275 GAAAGCTTCTTCCCTTCCCAAT 58.565 45.455 0.00 0.00 0.00 3.16
119 120 4.600062 GAAAGCTTCTTCCCTTCCCAATA 58.400 43.478 0.00 0.00 0.00 1.90
120 121 4.888626 AAGCTTCTTCCCTTCCCAATAT 57.111 40.909 0.00 0.00 0.00 1.28
121 122 5.994416 AAGCTTCTTCCCTTCCCAATATA 57.006 39.130 0.00 0.00 0.00 0.86
122 123 5.994416 AGCTTCTTCCCTTCCCAATATAA 57.006 39.130 0.00 0.00 0.00 0.98
123 124 5.696030 AGCTTCTTCCCTTCCCAATATAAC 58.304 41.667 0.00 0.00 0.00 1.89
124 125 4.515567 GCTTCTTCCCTTCCCAATATAACG 59.484 45.833 0.00 0.00 0.00 3.18
125 126 5.686650 GCTTCTTCCCTTCCCAATATAACGA 60.687 44.000 0.00 0.00 0.00 3.85
126 127 5.286267 TCTTCCCTTCCCAATATAACGAC 57.714 43.478 0.00 0.00 0.00 4.34
127 128 3.738830 TCCCTTCCCAATATAACGACG 57.261 47.619 0.00 0.00 0.00 5.12
128 129 3.033184 TCCCTTCCCAATATAACGACGT 58.967 45.455 0.00 0.00 0.00 4.34
129 130 3.451902 TCCCTTCCCAATATAACGACGTT 59.548 43.478 18.47 18.47 0.00 3.99
130 131 3.558418 CCCTTCCCAATATAACGACGTTG 59.442 47.826 23.00 6.56 0.00 4.10
131 132 4.186159 CCTTCCCAATATAACGACGTTGT 58.814 43.478 23.00 18.63 0.00 3.32
132 133 4.632688 CCTTCCCAATATAACGACGTTGTT 59.367 41.667 23.97 23.97 35.86 2.83
133 134 5.122711 CCTTCCCAATATAACGACGTTGTTT 59.877 40.000 25.50 15.37 33.32 2.83
134 135 6.348704 CCTTCCCAATATAACGACGTTGTTTT 60.349 38.462 25.50 19.69 33.32 2.43
135 136 5.929278 TCCCAATATAACGACGTTGTTTTG 58.071 37.500 25.50 23.66 33.32 2.44
136 137 4.555747 CCCAATATAACGACGTTGTTTTGC 59.444 41.667 25.50 0.00 29.74 3.68
137 138 5.387279 CCAATATAACGACGTTGTTTTGCT 58.613 37.500 25.50 11.18 29.74 3.91
138 139 6.402334 CCCAATATAACGACGTTGTTTTGCTA 60.402 38.462 25.50 8.46 29.74 3.49
139 140 7.016466 CCAATATAACGACGTTGTTTTGCTAA 58.984 34.615 25.50 7.72 29.74 3.09
140 141 7.534578 CCAATATAACGACGTTGTTTTGCTAAA 59.465 33.333 25.50 6.99 29.74 1.85
141 142 8.563949 CAATATAACGACGTTGTTTTGCTAAAG 58.436 33.333 25.50 6.15 33.32 1.85
142 143 4.603231 AACGACGTTGTTTTGCTAAAGA 57.397 36.364 15.61 0.00 0.00 2.52
143 144 4.603231 ACGACGTTGTTTTGCTAAAGAA 57.397 36.364 1.48 0.00 0.00 2.52
144 145 4.972201 ACGACGTTGTTTTGCTAAAGAAA 58.028 34.783 1.48 0.00 29.51 2.52
145 146 5.392286 ACGACGTTGTTTTGCTAAAGAAAA 58.608 33.333 1.48 0.00 29.51 2.29
146 147 5.284424 ACGACGTTGTTTTGCTAAAGAAAAC 59.716 36.000 1.48 3.94 41.63 2.43
147 148 5.284188 CGACGTTGTTTTGCTAAAGAAAACA 59.716 36.000 4.87 6.39 46.49 2.83
154 155 8.413899 TGTTTTGCTAAAGAAAACAATGTACC 57.586 30.769 8.98 0.00 45.66 3.34
155 156 7.492994 TGTTTTGCTAAAGAAAACAATGTACCC 59.507 33.333 8.98 0.00 45.66 3.69
156 157 6.716934 TTGCTAAAGAAAACAATGTACCCA 57.283 33.333 0.00 0.00 0.00 4.51
157 158 6.909550 TGCTAAAGAAAACAATGTACCCAT 57.090 33.333 0.00 0.00 0.00 4.00
158 159 6.686630 TGCTAAAGAAAACAATGTACCCATG 58.313 36.000 0.00 0.00 0.00 3.66
159 160 6.266558 TGCTAAAGAAAACAATGTACCCATGT 59.733 34.615 0.00 0.00 0.00 3.21
160 161 7.151976 GCTAAAGAAAACAATGTACCCATGTT 58.848 34.615 0.00 3.09 0.00 2.71
161 162 7.116233 GCTAAAGAAAACAATGTACCCATGTTG 59.884 37.037 8.28 0.00 0.00 3.33
162 163 6.478512 AAGAAAACAATGTACCCATGTTGT 57.521 33.333 8.28 4.03 0.00 3.32
163 164 7.589958 AAGAAAACAATGTACCCATGTTGTA 57.410 32.000 8.28 0.00 0.00 2.41
164 165 7.775053 AGAAAACAATGTACCCATGTTGTAT 57.225 32.000 8.28 0.00 0.00 2.29
165 166 7.826690 AGAAAACAATGTACCCATGTTGTATC 58.173 34.615 8.28 7.79 0.00 2.24
166 167 6.524101 AAACAATGTACCCATGTTGTATCC 57.476 37.500 8.28 0.00 0.00 2.59
167 168 4.532834 ACAATGTACCCATGTTGTATCCC 58.467 43.478 0.00 0.00 0.00 3.85
168 169 2.992124 TGTACCCATGTTGTATCCCG 57.008 50.000 0.00 0.00 0.00 5.14
169 170 1.134340 TGTACCCATGTTGTATCCCGC 60.134 52.381 0.00 0.00 0.00 6.13
170 171 1.134340 GTACCCATGTTGTATCCCGCA 60.134 52.381 0.00 0.00 0.00 5.69
171 172 0.329931 ACCCATGTTGTATCCCGCAA 59.670 50.000 0.00 0.00 0.00 4.85
172 173 1.064017 ACCCATGTTGTATCCCGCAAT 60.064 47.619 0.00 0.00 0.00 3.56
173 174 2.173782 ACCCATGTTGTATCCCGCAATA 59.826 45.455 0.00 0.00 0.00 1.90
174 175 2.813754 CCCATGTTGTATCCCGCAATAG 59.186 50.000 0.00 0.00 0.00 1.73
175 176 3.476552 CCATGTTGTATCCCGCAATAGT 58.523 45.455 0.00 0.00 0.00 2.12
176 177 3.250762 CCATGTTGTATCCCGCAATAGTG 59.749 47.826 0.00 0.00 0.00 2.74
177 178 3.897141 TGTTGTATCCCGCAATAGTGA 57.103 42.857 0.00 0.00 0.00 3.41
178 179 3.527533 TGTTGTATCCCGCAATAGTGAC 58.472 45.455 0.00 0.00 0.00 3.67
179 180 3.055747 TGTTGTATCCCGCAATAGTGACA 60.056 43.478 0.00 0.00 0.00 3.58
180 181 4.127171 GTTGTATCCCGCAATAGTGACAT 58.873 43.478 0.00 0.00 0.00 3.06
181 182 5.163395 TGTTGTATCCCGCAATAGTGACATA 60.163 40.000 0.00 0.00 0.00 2.29
182 183 5.134202 TGTATCCCGCAATAGTGACATAG 57.866 43.478 0.00 0.00 0.00 2.23
183 184 4.830600 TGTATCCCGCAATAGTGACATAGA 59.169 41.667 0.00 0.00 0.00 1.98
184 185 4.955811 ATCCCGCAATAGTGACATAGAA 57.044 40.909 0.00 0.00 0.00 2.10
185 186 4.955811 TCCCGCAATAGTGACATAGAAT 57.044 40.909 0.00 0.00 0.00 2.40
186 187 6.605471 ATCCCGCAATAGTGACATAGAATA 57.395 37.500 0.00 0.00 0.00 1.75
187 188 5.779922 TCCCGCAATAGTGACATAGAATAC 58.220 41.667 0.00 0.00 0.00 1.89
188 189 4.929808 CCCGCAATAGTGACATAGAATACC 59.070 45.833 0.00 0.00 0.00 2.73
189 190 5.510690 CCCGCAATAGTGACATAGAATACCA 60.511 44.000 0.00 0.00 0.00 3.25
190 191 5.635280 CCGCAATAGTGACATAGAATACCAG 59.365 44.000 0.00 0.00 0.00 4.00
191 192 5.635280 CGCAATAGTGACATAGAATACCAGG 59.365 44.000 0.00 0.00 0.00 4.45
192 193 6.525629 GCAATAGTGACATAGAATACCAGGT 58.474 40.000 0.00 0.00 0.00 4.00
193 194 6.992715 GCAATAGTGACATAGAATACCAGGTT 59.007 38.462 0.00 0.00 0.00 3.50
194 195 7.171678 GCAATAGTGACATAGAATACCAGGTTC 59.828 40.741 0.00 0.00 0.00 3.62
195 196 5.615925 AGTGACATAGAATACCAGGTTCC 57.384 43.478 0.00 0.00 0.00 3.62
196 197 5.030147 AGTGACATAGAATACCAGGTTCCA 58.970 41.667 0.00 0.00 0.00 3.53
197 198 5.487488 AGTGACATAGAATACCAGGTTCCAA 59.513 40.000 0.00 0.00 0.00 3.53
198 199 5.585047 GTGACATAGAATACCAGGTTCCAAC 59.415 44.000 0.00 0.00 0.00 3.77
208 209 3.574780 GTTCCAACCAGTAGCGGC 58.425 61.111 0.00 0.00 0.00 6.53
209 210 2.047655 TTCCAACCAGTAGCGGCG 60.048 61.111 0.51 0.51 0.00 6.46
210 211 2.874664 TTCCAACCAGTAGCGGCGT 61.875 57.895 9.37 0.00 0.00 5.68
211 212 3.118454 CCAACCAGTAGCGGCGTG 61.118 66.667 9.37 0.00 0.00 5.34
212 213 3.118454 CAACCAGTAGCGGCGTGG 61.118 66.667 9.37 11.00 37.38 4.94
213 214 3.307906 AACCAGTAGCGGCGTGGA 61.308 61.111 19.53 0.00 35.17 4.02
214 215 3.296709 AACCAGTAGCGGCGTGGAG 62.297 63.158 19.53 2.14 35.17 3.86
215 216 3.760035 CCAGTAGCGGCGTGGAGT 61.760 66.667 9.37 0.00 32.60 3.85
216 217 2.507102 CAGTAGCGGCGTGGAGTG 60.507 66.667 9.37 3.50 0.00 3.51
217 218 3.760035 AGTAGCGGCGTGGAGTGG 61.760 66.667 9.37 0.00 0.00 4.00
218 219 3.755628 GTAGCGGCGTGGAGTGGA 61.756 66.667 9.37 0.00 0.00 4.02
219 220 2.992689 TAGCGGCGTGGAGTGGAA 60.993 61.111 9.37 0.00 0.00 3.53
220 221 2.355986 TAGCGGCGTGGAGTGGAAT 61.356 57.895 9.37 0.00 0.00 3.01
221 222 1.038681 TAGCGGCGTGGAGTGGAATA 61.039 55.000 9.37 0.00 0.00 1.75
222 223 1.448893 GCGGCGTGGAGTGGAATAA 60.449 57.895 9.37 0.00 0.00 1.40
223 224 1.429148 GCGGCGTGGAGTGGAATAAG 61.429 60.000 9.37 0.00 0.00 1.73
224 225 1.429148 CGGCGTGGAGTGGAATAAGC 61.429 60.000 0.00 0.00 0.00 3.09
225 226 1.095807 GGCGTGGAGTGGAATAAGCC 61.096 60.000 0.00 0.00 36.32 4.35
226 227 0.392461 GCGTGGAGTGGAATAAGCCA 60.392 55.000 0.00 0.00 35.02 4.75
227 228 1.948611 GCGTGGAGTGGAATAAGCCAA 60.949 52.381 0.00 0.00 40.20 4.52
228 229 2.009774 CGTGGAGTGGAATAAGCCAAG 58.990 52.381 0.00 0.00 40.20 3.61
229 230 1.745653 GTGGAGTGGAATAAGCCAAGC 59.254 52.381 0.00 0.00 40.20 4.01
230 231 1.354031 TGGAGTGGAATAAGCCAAGCA 59.646 47.619 0.00 0.00 40.20 3.91
231 232 2.224992 TGGAGTGGAATAAGCCAAGCAA 60.225 45.455 0.00 0.00 40.20 3.91
232 233 2.825532 GGAGTGGAATAAGCCAAGCAAA 59.174 45.455 0.00 0.00 40.20 3.68
233 234 3.258123 GGAGTGGAATAAGCCAAGCAAAA 59.742 43.478 0.00 0.00 40.20 2.44
234 235 4.237724 GAGTGGAATAAGCCAAGCAAAAC 58.762 43.478 0.00 0.00 40.20 2.43
235 236 3.640967 AGTGGAATAAGCCAAGCAAAACA 59.359 39.130 0.00 0.00 40.20 2.83
236 237 3.740832 GTGGAATAAGCCAAGCAAAACAC 59.259 43.478 0.00 0.00 40.20 3.32
237 238 3.386078 TGGAATAAGCCAAGCAAAACACA 59.614 39.130 0.00 0.00 34.31 3.72
238 239 3.740832 GGAATAAGCCAAGCAAAACACAC 59.259 43.478 0.00 0.00 0.00 3.82
239 240 4.367450 GAATAAGCCAAGCAAAACACACA 58.633 39.130 0.00 0.00 0.00 3.72
240 241 2.758736 AAGCCAAGCAAAACACACAA 57.241 40.000 0.00 0.00 0.00 3.33
241 242 2.008752 AGCCAAGCAAAACACACAAC 57.991 45.000 0.00 0.00 0.00 3.32
242 243 1.274728 AGCCAAGCAAAACACACAACA 59.725 42.857 0.00 0.00 0.00 3.33
243 244 1.393196 GCCAAGCAAAACACACAACAC 59.607 47.619 0.00 0.00 0.00 3.32
244 245 1.653114 CCAAGCAAAACACACAACACG 59.347 47.619 0.00 0.00 0.00 4.49
245 246 1.058979 CAAGCAAAACACACAACACGC 59.941 47.619 0.00 0.00 0.00 5.34
246 247 0.242286 AGCAAAACACACAACACGCA 59.758 45.000 0.00 0.00 0.00 5.24
247 248 0.639756 GCAAAACACACAACACGCAG 59.360 50.000 0.00 0.00 0.00 5.18
261 262 3.225798 GCAGTGGTGGCAGGCAAA 61.226 61.111 0.00 0.00 0.00 3.68
262 263 2.730094 CAGTGGTGGCAGGCAAAC 59.270 61.111 0.00 0.00 0.00 2.93
263 264 2.521708 AGTGGTGGCAGGCAAACC 60.522 61.111 0.00 3.55 34.38 3.27
265 266 2.203480 TGGTGGCAGGCAAACCTC 60.203 61.111 14.15 0.00 46.34 3.85
266 267 2.991540 GGTGGCAGGCAAACCTCC 60.992 66.667 0.00 0.00 46.34 4.30
267 268 2.203480 GTGGCAGGCAAACCTCCA 60.203 61.111 0.00 0.00 46.34 3.86
268 269 2.115910 TGGCAGGCAAACCTCCAG 59.884 61.111 0.00 0.00 46.34 3.86
269 270 3.376918 GGCAGGCAAACCTCCAGC 61.377 66.667 0.00 0.00 46.34 4.85
270 271 2.598394 GCAGGCAAACCTCCAGCA 60.598 61.111 0.00 0.00 46.34 4.41
271 272 2.202395 GCAGGCAAACCTCCAGCAA 61.202 57.895 0.00 0.00 46.34 3.91
272 273 1.747325 GCAGGCAAACCTCCAGCAAA 61.747 55.000 0.00 0.00 46.34 3.68
273 274 0.752054 CAGGCAAACCTCCAGCAAAA 59.248 50.000 0.00 0.00 46.34 2.44
274 275 0.752658 AGGCAAACCTCCAGCAAAAC 59.247 50.000 0.00 0.00 46.34 2.43
275 276 0.463620 GGCAAACCTCCAGCAAAACA 59.536 50.000 0.00 0.00 0.00 2.83
276 277 1.070601 GGCAAACCTCCAGCAAAACAT 59.929 47.619 0.00 0.00 0.00 2.71
277 278 2.485302 GGCAAACCTCCAGCAAAACATT 60.485 45.455 0.00 0.00 0.00 2.71
278 279 3.205338 GCAAACCTCCAGCAAAACATTT 58.795 40.909 0.00 0.00 0.00 2.32
279 280 4.376146 GCAAACCTCCAGCAAAACATTTA 58.624 39.130 0.00 0.00 0.00 1.40
324 325 9.310449 TCAAGTTGAGAAATACTACTACTTCCT 57.690 33.333 0.08 0.00 0.00 3.36
325 326 9.575783 CAAGTTGAGAAATACTACTACTTCCTC 57.424 37.037 0.00 0.00 0.00 3.71
326 327 8.296211 AGTTGAGAAATACTACTACTTCCTCC 57.704 38.462 0.00 0.00 0.00 4.30
327 328 6.939132 TGAGAAATACTACTACTTCCTCCG 57.061 41.667 0.00 0.00 0.00 4.63
328 329 6.421485 TGAGAAATACTACTACTTCCTCCGT 58.579 40.000 0.00 0.00 0.00 4.69
329 330 6.541641 TGAGAAATACTACTACTTCCTCCGTC 59.458 42.308 0.00 0.00 0.00 4.79
330 331 5.827267 AGAAATACTACTACTTCCTCCGTCC 59.173 44.000 0.00 0.00 0.00 4.79
331 332 2.433662 ACTACTACTTCCTCCGTCCC 57.566 55.000 0.00 0.00 0.00 4.46
332 333 1.637553 ACTACTACTTCCTCCGTCCCA 59.362 52.381 0.00 0.00 0.00 4.37
333 334 2.244252 ACTACTACTTCCTCCGTCCCAT 59.756 50.000 0.00 0.00 0.00 4.00
334 335 3.461085 ACTACTACTTCCTCCGTCCCATA 59.539 47.826 0.00 0.00 0.00 2.74
335 336 3.393426 ACTACTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
336 337 3.924922 ACTACTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
337 338 5.070823 ACTACTTCCTCCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
338 339 5.652324 ACTACTTCCTCCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
339 340 6.797707 ACTACTTCCTCCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
340 341 7.243824 ACTACTTCCTCCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
341 342 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
342 343 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
343 344 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
344 345 6.148735 TCCTCCGTCCCATAATATAAGAGA 57.851 41.667 0.00 0.00 0.00 3.10
345 346 6.188407 TCCTCCGTCCCATAATATAAGAGAG 58.812 44.000 0.00 0.00 0.00 3.20
346 347 5.952947 CCTCCGTCCCATAATATAAGAGAGT 59.047 44.000 0.00 0.00 0.00 3.24
347 348 6.437793 CCTCCGTCCCATAATATAAGAGAGTT 59.562 42.308 0.00 0.00 0.00 3.01
348 349 7.038941 CCTCCGTCCCATAATATAAGAGAGTTT 60.039 40.741 0.00 0.00 0.00 2.66
349 350 8.258850 TCCGTCCCATAATATAAGAGAGTTTT 57.741 34.615 0.00 0.00 0.00 2.43
350 351 8.711170 TCCGTCCCATAATATAAGAGAGTTTTT 58.289 33.333 0.00 0.00 0.00 1.94
351 352 8.774586 CCGTCCCATAATATAAGAGAGTTTTTG 58.225 37.037 0.00 0.00 0.00 2.44
352 353 9.542462 CGTCCCATAATATAAGAGAGTTTTTGA 57.458 33.333 0.00 0.00 0.00 2.69
371 372 9.724839 GTTTTTGACACTAGTATAAACAAAGCA 57.275 29.630 0.00 0.00 0.00 3.91
380 381 8.784043 ACTAGTATAAACAAAGCAAGAAACCAG 58.216 33.333 0.00 0.00 0.00 4.00
383 384 8.299570 AGTATAAACAAAGCAAGAAACCAGATG 58.700 33.333 0.00 0.00 0.00 2.90
402 403 5.646793 CAGATGAAGAAGACACCAACATCAT 59.353 40.000 0.00 0.00 36.26 2.45
403 404 5.646793 AGATGAAGAAGACACCAACATCATG 59.353 40.000 0.00 0.00 36.26 3.07
404 405 4.074259 TGAAGAAGACACCAACATCATGG 58.926 43.478 0.00 0.00 46.38 3.66
923 924 9.459640 GTAAAATATGTACAGAGCGTGATTCTA 57.540 33.333 0.33 0.00 0.00 2.10
952 953 9.345517 CTCTTGTGGTACAATCACATAAAATTG 57.654 33.333 4.56 0.00 44.16 2.32
953 954 8.303156 TCTTGTGGTACAATCACATAAAATTGG 58.697 33.333 4.56 0.00 44.16 3.16
957 959 9.915629 GTGGTACAATCACATAAAATTGGTAAA 57.084 29.630 0.00 0.00 44.16 2.01
1025 1027 0.251916 ATCGGCGGGTCAATCTTCAA 59.748 50.000 7.21 0.00 0.00 2.69
1134 1136 0.178926 TACGGTTCACCCTCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
1674 1678 3.205338 TCCATATGTCGATGCAAGGTTG 58.795 45.455 1.24 0.00 0.00 3.77
1722 1726 1.439644 GCAGAAGGCGAGTAGAGGG 59.560 63.158 0.00 0.00 0.00 4.30
1723 1727 1.038130 GCAGAAGGCGAGTAGAGGGA 61.038 60.000 0.00 0.00 0.00 4.20
1730 1734 1.404315 GGCGAGTAGAGGGACAACAAG 60.404 57.143 0.00 0.00 0.00 3.16
1736 1740 5.125739 CGAGTAGAGGGACAACAAGATAAGT 59.874 44.000 0.00 0.00 0.00 2.24
1781 1785 4.335416 AGTTGTGGGAACATCATTGGTAG 58.665 43.478 0.00 0.00 46.14 3.18
1812 1816 2.438951 AAATTGCTGCAAGGCCCACG 62.439 55.000 20.72 0.00 0.00 4.94
1818 1822 3.428282 GCAAGGCCCACGTAACCG 61.428 66.667 0.00 0.00 40.83 4.44
1872 1876 8.215050 TCCTTTACAAACACCTCATTTAGAAGA 58.785 33.333 0.00 0.00 0.00 2.87
1878 1882 9.136323 ACAAACACCTCATTTAGAAGATTTTCT 57.864 29.630 3.71 3.71 45.45 2.52
1880 1884 9.971922 AAACACCTCATTTAGAAGATTTTCTTG 57.028 29.630 3.52 0.00 40.79 3.02
1885 1889 7.093596 CCTCATTTAGAAGATTTTCTTGGGCTT 60.094 37.037 3.52 0.00 40.79 4.35
2098 2109 3.081804 GAGGTTATAAATGCCATCCCCG 58.918 50.000 0.00 0.00 0.00 5.73
2155 2167 5.344884 GGTGCAACACAACTTAGCTTTTTA 58.655 37.500 0.00 0.00 39.98 1.52
2156 2168 5.458779 GGTGCAACACAACTTAGCTTTTTAG 59.541 40.000 0.00 0.00 39.98 1.85
2157 2169 6.262601 GTGCAACACAACTTAGCTTTTTAGA 58.737 36.000 0.00 0.00 36.32 2.10
2185 2197 8.478844 AACATAATGTTGGCAAAGACTGATTGC 61.479 37.037 0.00 3.65 41.55 3.56
2191 2203 2.522372 CAAAGACTGATTGCTGAGCG 57.478 50.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.306213 GCAGTTTCTTTCCTATCTACCAAAAC 58.694 38.462 0.00 0.00 0.00 2.43
1 2 6.433093 GGCAGTTTCTTTCCTATCTACCAAAA 59.567 38.462 0.00 0.00 0.00 2.44
2 3 5.944007 GGCAGTTTCTTTCCTATCTACCAAA 59.056 40.000 0.00 0.00 0.00 3.28
3 4 5.013704 TGGCAGTTTCTTTCCTATCTACCAA 59.986 40.000 0.00 0.00 0.00 3.67
4 5 4.534500 TGGCAGTTTCTTTCCTATCTACCA 59.466 41.667 0.00 0.00 0.00 3.25
5 6 4.876679 GTGGCAGTTTCTTTCCTATCTACC 59.123 45.833 0.00 0.00 0.00 3.18
6 7 5.735766 AGTGGCAGTTTCTTTCCTATCTAC 58.264 41.667 0.00 0.00 0.00 2.59
7 8 7.328737 GTTAGTGGCAGTTTCTTTCCTATCTA 58.671 38.462 0.00 0.00 0.00 1.98
8 9 4.917906 AGTGGCAGTTTCTTTCCTATCT 57.082 40.909 0.00 0.00 0.00 1.98
9 10 5.063564 CGTTAGTGGCAGTTTCTTTCCTATC 59.936 44.000 0.00 0.00 0.00 2.08
10 11 4.935808 CGTTAGTGGCAGTTTCTTTCCTAT 59.064 41.667 0.00 0.00 0.00 2.57
11 12 4.202284 ACGTTAGTGGCAGTTTCTTTCCTA 60.202 41.667 0.00 0.00 0.00 2.94
12 13 3.139077 CGTTAGTGGCAGTTTCTTTCCT 58.861 45.455 0.00 0.00 0.00 3.36
13 14 2.876550 ACGTTAGTGGCAGTTTCTTTCC 59.123 45.455 0.00 0.00 0.00 3.13
14 15 4.201881 ACAACGTTAGTGGCAGTTTCTTTC 60.202 41.667 0.00 0.00 0.00 2.62
15 16 3.692593 ACAACGTTAGTGGCAGTTTCTTT 59.307 39.130 0.00 0.00 0.00 2.52
16 17 3.275999 ACAACGTTAGTGGCAGTTTCTT 58.724 40.909 0.00 0.00 0.00 2.52
17 18 2.914059 ACAACGTTAGTGGCAGTTTCT 58.086 42.857 0.00 0.00 0.00 2.52
18 19 3.685836 AACAACGTTAGTGGCAGTTTC 57.314 42.857 0.00 0.00 0.00 2.78
19 20 5.761165 AATAACAACGTTAGTGGCAGTTT 57.239 34.783 0.00 0.00 0.00 2.66
20 21 5.297278 TGAAATAACAACGTTAGTGGCAGTT 59.703 36.000 0.00 1.59 0.00 3.16
21 22 4.817464 TGAAATAACAACGTTAGTGGCAGT 59.183 37.500 0.00 0.00 0.00 4.40
22 23 5.351233 TGAAATAACAACGTTAGTGGCAG 57.649 39.130 0.00 0.00 0.00 4.85
23 24 5.752892 TTGAAATAACAACGTTAGTGGCA 57.247 34.783 0.00 0.00 0.00 4.92
24 25 6.375377 TGATTGAAATAACAACGTTAGTGGC 58.625 36.000 0.00 0.00 32.50 5.01
25 26 8.687301 GTTTGATTGAAATAACAACGTTAGTGG 58.313 33.333 0.00 0.00 32.50 4.00
26 27 9.445786 AGTTTGATTGAAATAACAACGTTAGTG 57.554 29.630 0.00 0.00 32.50 2.74
27 28 9.659830 GAGTTTGATTGAAATAACAACGTTAGT 57.340 29.630 0.00 0.00 32.50 2.24
28 29 9.878599 AGAGTTTGATTGAAATAACAACGTTAG 57.121 29.630 0.00 0.00 32.50 2.34
30 31 9.581099 AAAGAGTTTGATTGAAATAACAACGTT 57.419 25.926 0.00 0.00 32.50 3.99
31 32 9.019764 CAAAGAGTTTGATTGAAATAACAACGT 57.980 29.630 0.00 0.00 43.26 3.99
32 33 8.479280 CCAAAGAGTTTGATTGAAATAACAACG 58.521 33.333 0.87 0.00 43.26 4.10
33 34 9.528018 TCCAAAGAGTTTGATTGAAATAACAAC 57.472 29.630 0.87 0.00 43.26 3.32
34 35 9.528018 GTCCAAAGAGTTTGATTGAAATAACAA 57.472 29.630 0.87 0.00 43.26 2.83
35 36 8.690884 TGTCCAAAGAGTTTGATTGAAATAACA 58.309 29.630 0.87 0.00 43.26 2.41
36 37 9.696917 ATGTCCAAAGAGTTTGATTGAAATAAC 57.303 29.630 0.87 0.00 43.26 1.89
37 38 9.912634 GATGTCCAAAGAGTTTGATTGAAATAA 57.087 29.630 0.87 0.00 43.26 1.40
38 39 9.076781 TGATGTCCAAAGAGTTTGATTGAAATA 57.923 29.630 0.87 0.00 43.26 1.40
39 40 7.954835 TGATGTCCAAAGAGTTTGATTGAAAT 58.045 30.769 0.87 0.00 43.26 2.17
40 41 7.345422 TGATGTCCAAAGAGTTTGATTGAAA 57.655 32.000 0.87 0.00 43.26 2.69
41 42 6.515531 GCTGATGTCCAAAGAGTTTGATTGAA 60.516 38.462 0.87 0.00 43.26 2.69
42 43 5.048504 GCTGATGTCCAAAGAGTTTGATTGA 60.049 40.000 0.87 0.00 43.26 2.57
43 44 5.159209 GCTGATGTCCAAAGAGTTTGATTG 58.841 41.667 0.87 0.00 43.26 2.67
44 45 4.219288 GGCTGATGTCCAAAGAGTTTGATT 59.781 41.667 0.87 0.00 43.26 2.57
45 46 3.760684 GGCTGATGTCCAAAGAGTTTGAT 59.239 43.478 0.87 0.00 43.26 2.57
46 47 3.149196 GGCTGATGTCCAAAGAGTTTGA 58.851 45.455 0.87 0.00 43.26 2.69
47 48 2.229784 GGGCTGATGTCCAAAGAGTTTG 59.770 50.000 0.00 0.00 38.01 2.93
48 49 2.158475 TGGGCTGATGTCCAAAGAGTTT 60.158 45.455 0.00 0.00 46.26 2.66
49 50 1.425066 TGGGCTGATGTCCAAAGAGTT 59.575 47.619 0.00 0.00 46.26 3.01
50 51 1.067295 TGGGCTGATGTCCAAAGAGT 58.933 50.000 0.00 0.00 46.26 3.24
51 52 3.963733 TGGGCTGATGTCCAAAGAG 57.036 52.632 0.00 0.00 46.26 2.85
57 58 2.703007 ACTAGAAGATGGGCTGATGTCC 59.297 50.000 0.00 0.00 38.74 4.02
58 59 4.376146 GAACTAGAAGATGGGCTGATGTC 58.624 47.826 0.00 0.00 0.00 3.06
59 60 3.135530 GGAACTAGAAGATGGGCTGATGT 59.864 47.826 0.00 0.00 0.00 3.06
60 61 3.135348 TGGAACTAGAAGATGGGCTGATG 59.865 47.826 0.00 0.00 0.00 3.07
61 62 3.387962 TGGAACTAGAAGATGGGCTGAT 58.612 45.455 0.00 0.00 0.00 2.90
62 63 2.832838 TGGAACTAGAAGATGGGCTGA 58.167 47.619 0.00 0.00 0.00 4.26
63 64 3.274288 GTTGGAACTAGAAGATGGGCTG 58.726 50.000 0.00 0.00 0.00 4.85
64 65 2.239907 GGTTGGAACTAGAAGATGGGCT 59.760 50.000 0.00 0.00 0.00 5.19
65 66 2.026262 TGGTTGGAACTAGAAGATGGGC 60.026 50.000 0.00 0.00 0.00 5.36
66 67 3.610911 GTGGTTGGAACTAGAAGATGGG 58.389 50.000 0.00 0.00 0.00 4.00
67 68 3.610911 GGTGGTTGGAACTAGAAGATGG 58.389 50.000 0.00 0.00 0.00 3.51
68 69 3.009033 TGGGTGGTTGGAACTAGAAGATG 59.991 47.826 0.00 0.00 0.00 2.90
69 70 3.009143 GTGGGTGGTTGGAACTAGAAGAT 59.991 47.826 0.00 0.00 0.00 2.40
70 71 2.370849 GTGGGTGGTTGGAACTAGAAGA 59.629 50.000 0.00 0.00 0.00 2.87
71 72 2.779506 GTGGGTGGTTGGAACTAGAAG 58.220 52.381 0.00 0.00 0.00 2.85
72 73 1.071071 CGTGGGTGGTTGGAACTAGAA 59.929 52.381 0.00 0.00 0.00 2.10
73 74 0.682852 CGTGGGTGGTTGGAACTAGA 59.317 55.000 0.00 0.00 0.00 2.43
74 75 0.682852 TCGTGGGTGGTTGGAACTAG 59.317 55.000 0.00 0.00 0.00 2.57
75 76 0.393820 GTCGTGGGTGGTTGGAACTA 59.606 55.000 0.00 0.00 0.00 2.24
76 77 1.147600 GTCGTGGGTGGTTGGAACT 59.852 57.895 0.00 0.00 0.00 3.01
77 78 1.153127 TGTCGTGGGTGGTTGGAAC 60.153 57.895 0.00 0.00 0.00 3.62
78 79 1.153127 GTGTCGTGGGTGGTTGGAA 60.153 57.895 0.00 0.00 0.00 3.53
79 80 2.506962 GTGTCGTGGGTGGTTGGA 59.493 61.111 0.00 0.00 0.00 3.53
80 81 2.926901 TTCGTGTCGTGGGTGGTTGG 62.927 60.000 0.00 0.00 0.00 3.77
81 82 1.090625 TTTCGTGTCGTGGGTGGTTG 61.091 55.000 0.00 0.00 0.00 3.77
82 83 0.812412 CTTTCGTGTCGTGGGTGGTT 60.812 55.000 0.00 0.00 0.00 3.67
83 84 1.227438 CTTTCGTGTCGTGGGTGGT 60.227 57.895 0.00 0.00 0.00 4.16
84 85 2.604174 GCTTTCGTGTCGTGGGTGG 61.604 63.158 0.00 0.00 0.00 4.61
85 86 1.157870 AAGCTTTCGTGTCGTGGGTG 61.158 55.000 0.00 0.00 0.00 4.61
86 87 0.878961 GAAGCTTTCGTGTCGTGGGT 60.879 55.000 0.00 0.00 0.00 4.51
87 88 0.600255 AGAAGCTTTCGTGTCGTGGG 60.600 55.000 0.00 0.00 34.02 4.61
88 89 1.192534 GAAGAAGCTTTCGTGTCGTGG 59.807 52.381 0.00 0.00 34.02 4.94
89 90 1.192534 GGAAGAAGCTTTCGTGTCGTG 59.807 52.381 0.00 0.00 34.02 4.35
90 91 1.499049 GGAAGAAGCTTTCGTGTCGT 58.501 50.000 0.00 0.00 34.02 4.34
91 92 0.790814 GGGAAGAAGCTTTCGTGTCG 59.209 55.000 0.00 0.00 34.02 4.35
92 93 2.171341 AGGGAAGAAGCTTTCGTGTC 57.829 50.000 0.00 0.00 34.02 3.67
93 94 2.495084 GAAGGGAAGAAGCTTTCGTGT 58.505 47.619 0.00 0.00 34.02 4.49
94 95 1.807142 GGAAGGGAAGAAGCTTTCGTG 59.193 52.381 0.00 0.00 34.02 4.35
95 96 1.271434 GGGAAGGGAAGAAGCTTTCGT 60.271 52.381 0.00 0.00 34.02 3.85
96 97 1.271379 TGGGAAGGGAAGAAGCTTTCG 60.271 52.381 0.00 0.00 34.02 3.46
97 98 2.586648 TGGGAAGGGAAGAAGCTTTC 57.413 50.000 0.00 0.00 0.00 2.62
98 99 3.549898 ATTGGGAAGGGAAGAAGCTTT 57.450 42.857 0.00 0.00 0.00 3.51
99 100 4.888626 ATATTGGGAAGGGAAGAAGCTT 57.111 40.909 0.00 0.00 0.00 3.74
100 101 5.687706 CGTTATATTGGGAAGGGAAGAAGCT 60.688 44.000 0.00 0.00 0.00 3.74
101 102 4.515567 CGTTATATTGGGAAGGGAAGAAGC 59.484 45.833 0.00 0.00 0.00 3.86
102 103 5.758784 GTCGTTATATTGGGAAGGGAAGAAG 59.241 44.000 0.00 0.00 0.00 2.85
103 104 5.677567 GTCGTTATATTGGGAAGGGAAGAA 58.322 41.667 0.00 0.00 0.00 2.52
104 105 4.202182 CGTCGTTATATTGGGAAGGGAAGA 60.202 45.833 0.00 0.00 0.00 2.87
105 106 4.056050 CGTCGTTATATTGGGAAGGGAAG 58.944 47.826 0.00 0.00 0.00 3.46
106 107 3.451902 ACGTCGTTATATTGGGAAGGGAA 59.548 43.478 0.00 0.00 0.00 3.97
107 108 3.033184 ACGTCGTTATATTGGGAAGGGA 58.967 45.455 0.00 0.00 0.00 4.20
108 109 3.464111 ACGTCGTTATATTGGGAAGGG 57.536 47.619 0.00 0.00 0.00 3.95
109 110 4.186159 ACAACGTCGTTATATTGGGAAGG 58.814 43.478 10.86 0.00 0.00 3.46
110 111 5.789710 AACAACGTCGTTATATTGGGAAG 57.210 39.130 10.86 0.00 0.00 3.46
111 112 6.372185 CAAAACAACGTCGTTATATTGGGAA 58.628 36.000 10.86 0.00 0.00 3.97
112 113 5.617308 GCAAAACAACGTCGTTATATTGGGA 60.617 40.000 20.80 0.00 0.00 4.37
113 114 4.555747 GCAAAACAACGTCGTTATATTGGG 59.444 41.667 20.80 8.63 0.00 4.12
114 115 5.387279 AGCAAAACAACGTCGTTATATTGG 58.613 37.500 20.80 12.25 0.00 3.16
115 116 7.996465 TTAGCAAAACAACGTCGTTATATTG 57.004 32.000 10.86 15.28 0.00 1.90
116 117 8.497554 TCTTTAGCAAAACAACGTCGTTATATT 58.502 29.630 10.86 3.10 0.00 1.28
117 118 8.020861 TCTTTAGCAAAACAACGTCGTTATAT 57.979 30.769 10.86 0.00 0.00 0.86
118 119 7.405469 TCTTTAGCAAAACAACGTCGTTATA 57.595 32.000 10.86 0.00 0.00 0.98
119 120 6.289745 TCTTTAGCAAAACAACGTCGTTAT 57.710 33.333 10.86 0.00 0.00 1.89
120 121 5.715429 TCTTTAGCAAAACAACGTCGTTA 57.285 34.783 10.86 0.00 0.00 3.18
121 122 4.603231 TCTTTAGCAAAACAACGTCGTT 57.397 36.364 4.40 4.40 0.00 3.85
122 123 4.603231 TTCTTTAGCAAAACAACGTCGT 57.397 36.364 0.00 0.00 0.00 4.34
123 124 5.284188 TGTTTTCTTTAGCAAAACAACGTCG 59.716 36.000 8.98 0.00 46.03 5.12
124 125 6.620253 TGTTTTCTTTAGCAAAACAACGTC 57.380 33.333 8.98 0.00 46.03 4.34
129 130 7.492994 GGGTACATTGTTTTCTTTAGCAAAACA 59.507 33.333 7.68 7.68 46.88 2.83
130 131 7.492994 TGGGTACATTGTTTTCTTTAGCAAAAC 59.507 33.333 0.00 3.13 41.97 2.43
131 132 7.556844 TGGGTACATTGTTTTCTTTAGCAAAA 58.443 30.769 0.00 0.00 0.00 2.44
132 133 7.113658 TGGGTACATTGTTTTCTTTAGCAAA 57.886 32.000 0.00 0.00 0.00 3.68
133 134 6.716934 TGGGTACATTGTTTTCTTTAGCAA 57.283 33.333 0.00 0.00 0.00 3.91
134 135 6.266558 ACATGGGTACATTGTTTTCTTTAGCA 59.733 34.615 0.00 0.00 34.35 3.49
135 136 6.687604 ACATGGGTACATTGTTTTCTTTAGC 58.312 36.000 0.00 0.00 34.35 3.09
136 137 8.141268 ACAACATGGGTACATTGTTTTCTTTAG 58.859 33.333 0.00 0.00 34.35 1.85
137 138 8.012957 ACAACATGGGTACATTGTTTTCTTTA 57.987 30.769 0.00 0.00 34.35 1.85
138 139 6.883744 ACAACATGGGTACATTGTTTTCTTT 58.116 32.000 0.00 0.00 34.35 2.52
139 140 6.478512 ACAACATGGGTACATTGTTTTCTT 57.521 33.333 0.00 0.00 34.35 2.52
140 141 7.093945 GGATACAACATGGGTACATTGTTTTCT 60.094 37.037 0.00 0.00 34.35 2.52
141 142 7.033185 GGATACAACATGGGTACATTGTTTTC 58.967 38.462 0.00 0.00 34.35 2.29
142 143 6.071051 GGGATACAACATGGGTACATTGTTTT 60.071 38.462 0.00 0.00 34.00 2.43
143 144 5.420739 GGGATACAACATGGGTACATTGTTT 59.579 40.000 0.00 0.00 34.00 2.83
144 145 4.953579 GGGATACAACATGGGTACATTGTT 59.046 41.667 0.00 0.00 34.00 2.83
145 146 4.532834 GGGATACAACATGGGTACATTGT 58.467 43.478 0.00 0.00 34.00 2.71
146 147 3.563808 CGGGATACAACATGGGTACATTG 59.436 47.826 0.00 0.00 34.00 2.82
147 148 3.815809 CGGGATACAACATGGGTACATT 58.184 45.455 0.00 0.00 34.00 2.71
148 149 2.486548 GCGGGATACAACATGGGTACAT 60.487 50.000 0.00 0.00 36.30 2.29
149 150 1.134340 GCGGGATACAACATGGGTACA 60.134 52.381 0.00 0.00 39.74 2.90
150 151 1.134340 TGCGGGATACAACATGGGTAC 60.134 52.381 0.00 0.00 39.74 3.34
151 152 1.205055 TGCGGGATACAACATGGGTA 58.795 50.000 0.00 0.00 39.74 3.69
152 153 0.329931 TTGCGGGATACAACATGGGT 59.670 50.000 0.00 0.00 39.74 4.51
153 154 1.691196 ATTGCGGGATACAACATGGG 58.309 50.000 0.00 0.00 39.74 4.00
154 155 3.250762 CACTATTGCGGGATACAACATGG 59.749 47.826 0.00 0.00 39.74 3.66
155 156 4.024893 GTCACTATTGCGGGATACAACATG 60.025 45.833 0.00 0.00 39.74 3.21
156 157 4.127171 GTCACTATTGCGGGATACAACAT 58.873 43.478 0.00 0.00 39.74 2.71
157 158 3.055747 TGTCACTATTGCGGGATACAACA 60.056 43.478 0.00 0.00 39.74 3.33
158 159 3.527533 TGTCACTATTGCGGGATACAAC 58.472 45.455 0.00 0.00 39.74 3.32
159 160 3.897141 TGTCACTATTGCGGGATACAA 57.103 42.857 0.00 0.00 39.74 2.41
160 161 4.830600 TCTATGTCACTATTGCGGGATACA 59.169 41.667 0.00 0.00 39.74 2.29
161 162 5.386958 TCTATGTCACTATTGCGGGATAC 57.613 43.478 0.00 0.00 0.00 2.24
162 163 6.605471 ATTCTATGTCACTATTGCGGGATA 57.395 37.500 0.00 0.00 0.00 2.59
163 164 4.955811 TTCTATGTCACTATTGCGGGAT 57.044 40.909 0.00 0.00 0.00 3.85
164 165 4.955811 ATTCTATGTCACTATTGCGGGA 57.044 40.909 0.00 0.00 0.00 5.14
165 166 4.929808 GGTATTCTATGTCACTATTGCGGG 59.070 45.833 0.00 0.00 0.00 6.13
166 167 5.538118 TGGTATTCTATGTCACTATTGCGG 58.462 41.667 0.00 0.00 0.00 5.69
167 168 5.635280 CCTGGTATTCTATGTCACTATTGCG 59.365 44.000 0.00 0.00 0.00 4.85
168 169 6.525629 ACCTGGTATTCTATGTCACTATTGC 58.474 40.000 0.00 0.00 0.00 3.56
169 170 7.657761 GGAACCTGGTATTCTATGTCACTATTG 59.342 40.741 0.00 0.00 0.00 1.90
170 171 7.347222 TGGAACCTGGTATTCTATGTCACTATT 59.653 37.037 0.00 0.00 0.00 1.73
171 172 6.844388 TGGAACCTGGTATTCTATGTCACTAT 59.156 38.462 0.00 0.00 0.00 2.12
172 173 6.199376 TGGAACCTGGTATTCTATGTCACTA 58.801 40.000 0.00 0.00 0.00 2.74
173 174 5.030147 TGGAACCTGGTATTCTATGTCACT 58.970 41.667 0.00 0.00 0.00 3.41
174 175 5.353394 TGGAACCTGGTATTCTATGTCAC 57.647 43.478 0.00 0.00 0.00 3.67
175 176 5.338871 GGTTGGAACCTGGTATTCTATGTCA 60.339 44.000 0.00 0.00 45.75 3.58
176 177 5.123936 GGTTGGAACCTGGTATTCTATGTC 58.876 45.833 0.00 0.00 45.75 3.06
177 178 5.112129 GGTTGGAACCTGGTATTCTATGT 57.888 43.478 0.00 0.00 45.75 2.29
191 192 2.388232 CGCCGCTACTGGTTGGAAC 61.388 63.158 0.00 0.00 0.00 3.62
192 193 2.047655 CGCCGCTACTGGTTGGAA 60.048 61.111 0.00 0.00 0.00 3.53
193 194 3.307906 ACGCCGCTACTGGTTGGA 61.308 61.111 0.00 0.00 0.00 3.53
194 195 3.118454 CACGCCGCTACTGGTTGG 61.118 66.667 0.00 0.00 0.00 3.77
195 196 3.118454 CCACGCCGCTACTGGTTG 61.118 66.667 0.00 0.00 0.00 3.77
196 197 3.296709 CTCCACGCCGCTACTGGTT 62.297 63.158 0.00 0.00 0.00 3.67
197 198 3.760035 CTCCACGCCGCTACTGGT 61.760 66.667 0.00 0.00 0.00 4.00
198 199 3.760035 ACTCCACGCCGCTACTGG 61.760 66.667 0.00 0.00 0.00 4.00
199 200 2.507102 CACTCCACGCCGCTACTG 60.507 66.667 0.00 0.00 0.00 2.74
200 201 3.760035 CCACTCCACGCCGCTACT 61.760 66.667 0.00 0.00 0.00 2.57
201 202 2.573609 ATTCCACTCCACGCCGCTAC 62.574 60.000 0.00 0.00 0.00 3.58
202 203 1.038681 TATTCCACTCCACGCCGCTA 61.039 55.000 0.00 0.00 0.00 4.26
203 204 1.895020 TTATTCCACTCCACGCCGCT 61.895 55.000 0.00 0.00 0.00 5.52
204 205 1.429148 CTTATTCCACTCCACGCCGC 61.429 60.000 0.00 0.00 0.00 6.53
205 206 1.429148 GCTTATTCCACTCCACGCCG 61.429 60.000 0.00 0.00 0.00 6.46
206 207 1.095807 GGCTTATTCCACTCCACGCC 61.096 60.000 0.00 0.00 0.00 5.68
207 208 0.392461 TGGCTTATTCCACTCCACGC 60.392 55.000 0.00 0.00 0.00 5.34
208 209 2.009774 CTTGGCTTATTCCACTCCACG 58.990 52.381 0.00 0.00 35.50 4.94
209 210 1.745653 GCTTGGCTTATTCCACTCCAC 59.254 52.381 0.00 0.00 35.50 4.02
210 211 1.354031 TGCTTGGCTTATTCCACTCCA 59.646 47.619 0.00 0.00 35.50 3.86
211 212 2.128771 TGCTTGGCTTATTCCACTCC 57.871 50.000 0.00 0.00 35.50 3.85
212 213 4.237724 GTTTTGCTTGGCTTATTCCACTC 58.762 43.478 0.00 0.00 35.50 3.51
213 214 3.640967 TGTTTTGCTTGGCTTATTCCACT 59.359 39.130 0.00 0.00 35.50 4.00
214 215 3.740832 GTGTTTTGCTTGGCTTATTCCAC 59.259 43.478 0.00 0.00 35.50 4.02
215 216 3.386078 TGTGTTTTGCTTGGCTTATTCCA 59.614 39.130 0.00 0.00 0.00 3.53
216 217 3.740832 GTGTGTTTTGCTTGGCTTATTCC 59.259 43.478 0.00 0.00 0.00 3.01
217 218 4.367450 TGTGTGTTTTGCTTGGCTTATTC 58.633 39.130 0.00 0.00 0.00 1.75
218 219 4.399004 TGTGTGTTTTGCTTGGCTTATT 57.601 36.364 0.00 0.00 0.00 1.40
219 220 4.119136 GTTGTGTGTTTTGCTTGGCTTAT 58.881 39.130 0.00 0.00 0.00 1.73
220 221 3.056536 TGTTGTGTGTTTTGCTTGGCTTA 60.057 39.130 0.00 0.00 0.00 3.09
221 222 2.289320 TGTTGTGTGTTTTGCTTGGCTT 60.289 40.909 0.00 0.00 0.00 4.35
222 223 1.274728 TGTTGTGTGTTTTGCTTGGCT 59.725 42.857 0.00 0.00 0.00 4.75
223 224 1.393196 GTGTTGTGTGTTTTGCTTGGC 59.607 47.619 0.00 0.00 0.00 4.52
224 225 1.653114 CGTGTTGTGTGTTTTGCTTGG 59.347 47.619 0.00 0.00 0.00 3.61
225 226 1.058979 GCGTGTTGTGTGTTTTGCTTG 59.941 47.619 0.00 0.00 0.00 4.01
226 227 1.336332 TGCGTGTTGTGTGTTTTGCTT 60.336 42.857 0.00 0.00 0.00 3.91
227 228 0.242286 TGCGTGTTGTGTGTTTTGCT 59.758 45.000 0.00 0.00 0.00 3.91
228 229 0.639756 CTGCGTGTTGTGTGTTTTGC 59.360 50.000 0.00 0.00 0.00 3.68
229 230 1.648191 CACTGCGTGTTGTGTGTTTTG 59.352 47.619 1.24 0.00 0.00 2.44
230 231 1.402194 CCACTGCGTGTTGTGTGTTTT 60.402 47.619 7.68 0.00 32.76 2.43
231 232 0.170116 CCACTGCGTGTTGTGTGTTT 59.830 50.000 7.68 0.00 32.76 2.83
232 233 0.958382 ACCACTGCGTGTTGTGTGTT 60.958 50.000 7.68 0.00 32.76 3.32
233 234 1.376683 ACCACTGCGTGTTGTGTGT 60.377 52.632 7.68 0.00 32.76 3.72
234 235 1.062365 CACCACTGCGTGTTGTGTG 59.938 57.895 7.68 5.20 37.49 3.82
235 236 2.112198 CCACCACTGCGTGTTGTGT 61.112 57.895 11.11 0.09 39.74 3.72
236 237 2.715005 CCACCACTGCGTGTTGTG 59.285 61.111 7.68 7.24 40.68 3.33
237 238 3.209097 GCCACCACTGCGTGTTGT 61.209 61.111 7.68 0.00 31.47 3.32
238 239 3.185082 CTGCCACCACTGCGTGTTG 62.185 63.158 7.68 4.16 31.47 3.33
239 240 2.901840 CTGCCACCACTGCGTGTT 60.902 61.111 7.68 0.00 31.47 3.32
240 241 4.935495 CCTGCCACCACTGCGTGT 62.935 66.667 7.68 0.00 31.47 4.49
244 245 3.225798 TTTGCCTGCCACCACTGC 61.226 61.111 0.00 0.00 0.00 4.40
245 246 2.730094 GTTTGCCTGCCACCACTG 59.270 61.111 0.00 0.00 0.00 3.66
246 247 2.521708 GGTTTGCCTGCCACCACT 60.522 61.111 3.36 0.00 0.00 4.00
247 248 2.521708 AGGTTTGCCTGCCACCAC 60.522 61.111 9.54 0.00 45.05 4.16
256 257 0.463620 TGTTTTGCTGGAGGTTTGCC 59.536 50.000 0.00 0.00 0.00 4.52
257 258 2.531522 ATGTTTTGCTGGAGGTTTGC 57.468 45.000 0.00 0.00 0.00 3.68
258 259 8.034215 TGATATAAATGTTTTGCTGGAGGTTTG 58.966 33.333 0.00 0.00 0.00 2.93
259 260 8.133024 TGATATAAATGTTTTGCTGGAGGTTT 57.867 30.769 0.00 0.00 0.00 3.27
260 261 7.716799 TGATATAAATGTTTTGCTGGAGGTT 57.283 32.000 0.00 0.00 0.00 3.50
261 262 7.631377 GCTTGATATAAATGTTTTGCTGGAGGT 60.631 37.037 0.00 0.00 0.00 3.85
262 263 6.698766 GCTTGATATAAATGTTTTGCTGGAGG 59.301 38.462 0.00 0.00 0.00 4.30
263 264 7.259882 TGCTTGATATAAATGTTTTGCTGGAG 58.740 34.615 0.00 0.00 0.00 3.86
264 265 7.167924 TGCTTGATATAAATGTTTTGCTGGA 57.832 32.000 0.00 0.00 0.00 3.86
265 266 7.830940 TTGCTTGATATAAATGTTTTGCTGG 57.169 32.000 0.00 0.00 0.00 4.85
266 267 9.749490 CTTTTGCTTGATATAAATGTTTTGCTG 57.251 29.630 0.00 0.00 0.00 4.41
267 268 9.709495 TCTTTTGCTTGATATAAATGTTTTGCT 57.291 25.926 0.00 0.00 0.00 3.91
313 314 2.431954 TGGGACGGAGGAAGTAGTAG 57.568 55.000 0.00 0.00 0.00 2.57
314 315 4.524802 TTATGGGACGGAGGAAGTAGTA 57.475 45.455 0.00 0.00 0.00 1.82
315 316 3.393426 TTATGGGACGGAGGAAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
316 317 7.614583 TCTTATATTATGGGACGGAGGAAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
317 318 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
318 319 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
320 321 6.558498 TCTCTTATATTATGGGACGGAGGAA 58.442 40.000 0.00 0.00 0.00 3.36
321 322 6.148735 TCTCTTATATTATGGGACGGAGGA 57.851 41.667 0.00 0.00 0.00 3.71
322 323 5.952947 ACTCTCTTATATTATGGGACGGAGG 59.047 44.000 0.00 0.00 0.00 4.30
323 324 7.469537 AACTCTCTTATATTATGGGACGGAG 57.530 40.000 0.00 0.00 0.00 4.63
324 325 7.850935 AAACTCTCTTATATTATGGGACGGA 57.149 36.000 0.00 0.00 0.00 4.69
325 326 8.774586 CAAAAACTCTCTTATATTATGGGACGG 58.225 37.037 0.00 0.00 0.00 4.79
326 327 9.542462 TCAAAAACTCTCTTATATTATGGGACG 57.458 33.333 0.00 0.00 0.00 4.79
344 345 9.946165 GCTTTGTTTATACTAGTGTCAAAAACT 57.054 29.630 5.39 0.00 0.00 2.66
345 346 9.724839 TGCTTTGTTTATACTAGTGTCAAAAAC 57.275 29.630 5.39 7.50 0.00 2.43
347 348 9.944663 CTTGCTTTGTTTATACTAGTGTCAAAA 57.055 29.630 5.39 0.00 0.00 2.44
348 349 9.332502 TCTTGCTTTGTTTATACTAGTGTCAAA 57.667 29.630 5.39 5.35 0.00 2.69
349 350 8.896320 TCTTGCTTTGTTTATACTAGTGTCAA 57.104 30.769 5.39 0.00 0.00 3.18
350 351 8.896320 TTCTTGCTTTGTTTATACTAGTGTCA 57.104 30.769 5.39 0.00 0.00 3.58
351 352 9.595357 GTTTCTTGCTTTGTTTATACTAGTGTC 57.405 33.333 5.39 0.00 0.00 3.67
352 353 8.565416 GGTTTCTTGCTTTGTTTATACTAGTGT 58.435 33.333 5.39 0.39 0.00 3.55
353 354 8.564574 TGGTTTCTTGCTTTGTTTATACTAGTG 58.435 33.333 5.39 0.00 0.00 2.74
354 355 8.685838 TGGTTTCTTGCTTTGTTTATACTAGT 57.314 30.769 0.00 0.00 0.00 2.57
355 356 8.999431 TCTGGTTTCTTGCTTTGTTTATACTAG 58.001 33.333 0.00 0.00 0.00 2.57
356 357 8.911918 TCTGGTTTCTTGCTTTGTTTATACTA 57.088 30.769 0.00 0.00 0.00 1.82
357 358 7.817418 TCTGGTTTCTTGCTTTGTTTATACT 57.183 32.000 0.00 0.00 0.00 2.12
358 359 8.296713 TCATCTGGTTTCTTGCTTTGTTTATAC 58.703 33.333 0.00 0.00 0.00 1.47
359 360 8.402798 TCATCTGGTTTCTTGCTTTGTTTATA 57.597 30.769 0.00 0.00 0.00 0.98
360 361 7.288810 TCATCTGGTTTCTTGCTTTGTTTAT 57.711 32.000 0.00 0.00 0.00 1.40
361 362 6.707440 TCATCTGGTTTCTTGCTTTGTTTA 57.293 33.333 0.00 0.00 0.00 2.01
362 363 5.596836 TCATCTGGTTTCTTGCTTTGTTT 57.403 34.783 0.00 0.00 0.00 2.83
368 369 4.759183 GTCTTCTTCATCTGGTTTCTTGCT 59.241 41.667 0.00 0.00 0.00 3.91
371 372 5.066593 GGTGTCTTCTTCATCTGGTTTCTT 58.933 41.667 0.00 0.00 0.00 2.52
380 381 5.163683 CCATGATGTTGGTGTCTTCTTCATC 60.164 44.000 0.00 0.00 31.74 2.92
383 384 4.691860 CCATGATGTTGGTGTCTTCTTC 57.308 45.455 0.00 0.00 31.74 2.87
852 853 9.884465 GCTGGAATATAGCAATAACTTTGTTAG 57.116 33.333 0.00 0.00 40.81 2.34
853 854 8.556194 CGCTGGAATATAGCAATAACTTTGTTA 58.444 33.333 0.00 0.00 41.18 2.41
854 855 7.417612 CGCTGGAATATAGCAATAACTTTGTT 58.582 34.615 0.00 0.00 41.18 2.83
911 912 4.505922 CCACAAGAGAATAGAATCACGCTC 59.494 45.833 0.00 0.00 0.00 5.03
913 914 4.184629 ACCACAAGAGAATAGAATCACGC 58.815 43.478 0.00 0.00 0.00 5.34
923 924 8.862325 TTTATGTGATTGTACCACAAGAGAAT 57.138 30.769 7.40 0.00 46.12 2.40
952 953 4.991687 CGGCTGAGAATAGAGGAATTTACC 59.008 45.833 0.00 0.00 0.00 2.85
953 954 5.602628 ACGGCTGAGAATAGAGGAATTTAC 58.397 41.667 0.00 0.00 0.00 2.01
957 959 3.829601 CCTACGGCTGAGAATAGAGGAAT 59.170 47.826 0.00 0.00 0.00 3.01
1025 1027 3.134804 CCCTTCTTCGGTATTGTCCATCT 59.865 47.826 0.00 0.00 0.00 2.90
1134 1136 3.023119 TGGCACTGTCATCTTGTTTGTT 58.977 40.909 0.00 0.00 0.00 2.83
1194 1197 1.809207 GATGGCCATGGTTGTTCCG 59.191 57.895 26.56 0.00 39.52 4.30
1372 1375 2.420022 GCATGTTCAAAGCTCCATACGT 59.580 45.455 0.00 0.00 0.00 3.57
1648 1652 4.024556 CCTTGCATCGACATATGGAAAGAC 60.025 45.833 7.80 0.00 36.85 3.01
1674 1678 1.713597 GCACTGGCCTAACAAATTGC 58.286 50.000 3.32 0.00 0.00 3.56
1722 1726 7.159322 TGTCCTCTCTACTTATCTTGTTGTC 57.841 40.000 0.00 0.00 0.00 3.18
1723 1727 7.310113 CCTTGTCCTCTCTACTTATCTTGTTGT 60.310 40.741 0.00 0.00 0.00 3.32
1730 1734 6.039605 GTGGTACCTTGTCCTCTCTACTTATC 59.960 46.154 14.36 0.00 0.00 1.75
1736 1740 4.087182 CAAGTGGTACCTTGTCCTCTCTA 58.913 47.826 14.36 0.00 37.61 2.43
1812 1816 0.746923 GGTTGGCAGGATCCGGTTAC 60.747 60.000 13.75 8.76 0.00 2.50
1818 1822 0.394899 CTCCTTGGTTGGCAGGATCC 60.395 60.000 2.48 2.48 38.58 3.36
1952 1963 2.714250 TGTACCCACTTGACCTTCCAAT 59.286 45.455 0.00 0.00 0.00 3.16
1957 1968 5.836024 TCTTATTGTACCCACTTGACCTT 57.164 39.130 0.00 0.00 0.00 3.50
2026 2037 4.707030 AACAATGAATGCACGATCACAT 57.293 36.364 0.00 0.00 0.00 3.21
2028 2039 3.853671 GGAAACAATGAATGCACGATCAC 59.146 43.478 0.00 0.00 0.00 3.06
2067 2078 8.537728 TGGCATTTATAACCTCATCAAAATCT 57.462 30.769 0.00 0.00 0.00 2.40
2089 2100 0.035458 CCTTGATACTCGGGGATGGC 59.965 60.000 0.00 0.00 0.00 4.40
2131 2142 2.348411 AGCTAAGTTGTGTTGCACCT 57.652 45.000 0.00 0.00 32.73 4.00
2155 2167 6.925165 CAGTCTTTGCCAACATTATGTTTTCT 59.075 34.615 7.97 0.00 38.77 2.52
2156 2168 6.922957 TCAGTCTTTGCCAACATTATGTTTTC 59.077 34.615 7.97 3.91 38.77 2.29
2157 2169 6.815089 TCAGTCTTTGCCAACATTATGTTTT 58.185 32.000 7.97 0.00 38.77 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.