Multiple sequence alignment - TraesCS2D01G484100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G484100 | chr2D | 100.000 | 2753 | 0 | 0 | 1 | 2753 | 585473134 | 585470382 | 0.000000e+00 | 5084.0 |
1 | TraesCS2D01G484100 | chr2D | 84.699 | 366 | 43 | 8 | 25 | 378 | 585501323 | 585500959 | 1.210000e-93 | 353.0 |
2 | TraesCS2D01G484100 | chr2D | 74.033 | 543 | 124 | 16 | 2220 | 2753 | 560851096 | 560851630 | 3.590000e-49 | 206.0 |
3 | TraesCS2D01G484100 | chr5D | 91.619 | 1909 | 126 | 16 | 847 | 2753 | 133312355 | 133314231 | 0.000000e+00 | 2608.0 |
4 | TraesCS2D01G484100 | chr6B | 93.296 | 537 | 34 | 2 | 2219 | 2753 | 675209410 | 675208874 | 0.000000e+00 | 791.0 |
5 | TraesCS2D01G484100 | chr4A | 93.296 | 537 | 34 | 2 | 2219 | 2753 | 674445427 | 674444891 | 0.000000e+00 | 791.0 |
6 | TraesCS2D01G484100 | chr3B | 93.296 | 537 | 34 | 2 | 2219 | 2753 | 546914385 | 546913849 | 0.000000e+00 | 791.0 |
7 | TraesCS2D01G484100 | chr7B | 93.110 | 537 | 35 | 2 | 2219 | 2753 | 743927741 | 743928277 | 0.000000e+00 | 785.0 |
8 | TraesCS2D01G484100 | chr7B | 91.892 | 37 | 3 | 0 | 2246 | 2282 | 684964644 | 684964680 | 5.000000e-03 | 52.8 |
9 | TraesCS2D01G484100 | chr2B | 86.976 | 668 | 62 | 9 | 14 | 670 | 706414329 | 706413676 | 0.000000e+00 | 728.0 |
10 | TraesCS2D01G484100 | chr2A | 85.714 | 567 | 65 | 5 | 1 | 552 | 719537071 | 719536506 | 3.950000e-163 | 584.0 |
11 | TraesCS2D01G484100 | chr5B | 73.897 | 544 | 124 | 17 | 2220 | 2753 | 660131870 | 660131335 | 4.650000e-48 | 202.0 |
12 | TraesCS2D01G484100 | chr3D | 73.888 | 517 | 117 | 18 | 2245 | 2751 | 300912997 | 300912489 | 1.010000e-44 | 191.0 |
13 | TraesCS2D01G484100 | chr1B | 73.383 | 541 | 126 | 17 | 2223 | 2753 | 13425409 | 13424877 | 4.680000e-43 | 185.0 |
14 | TraesCS2D01G484100 | chr4D | 73.674 | 509 | 110 | 19 | 2256 | 2751 | 484471654 | 484471157 | 2.820000e-40 | 176.0 |
15 | TraesCS2D01G484100 | chr3A | 73.256 | 430 | 105 | 8 | 1105 | 1529 | 709115734 | 709116158 | 6.140000e-32 | 148.0 |
16 | TraesCS2D01G484100 | chr5A | 72.584 | 507 | 118 | 20 | 2255 | 2751 | 603509631 | 603509136 | 2.210000e-31 | 147.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G484100 | chr2D | 585470382 | 585473134 | 2752 | True | 5084 | 5084 | 100.000 | 1 | 2753 | 1 | chr2D.!!$R1 | 2752 |
1 | TraesCS2D01G484100 | chr2D | 560851096 | 560851630 | 534 | False | 206 | 206 | 74.033 | 2220 | 2753 | 1 | chr2D.!!$F1 | 533 |
2 | TraesCS2D01G484100 | chr5D | 133312355 | 133314231 | 1876 | False | 2608 | 2608 | 91.619 | 847 | 2753 | 1 | chr5D.!!$F1 | 1906 |
3 | TraesCS2D01G484100 | chr6B | 675208874 | 675209410 | 536 | True | 791 | 791 | 93.296 | 2219 | 2753 | 1 | chr6B.!!$R1 | 534 |
4 | TraesCS2D01G484100 | chr4A | 674444891 | 674445427 | 536 | True | 791 | 791 | 93.296 | 2219 | 2753 | 1 | chr4A.!!$R1 | 534 |
5 | TraesCS2D01G484100 | chr3B | 546913849 | 546914385 | 536 | True | 791 | 791 | 93.296 | 2219 | 2753 | 1 | chr3B.!!$R1 | 534 |
6 | TraesCS2D01G484100 | chr7B | 743927741 | 743928277 | 536 | False | 785 | 785 | 93.110 | 2219 | 2753 | 1 | chr7B.!!$F2 | 534 |
7 | TraesCS2D01G484100 | chr2B | 706413676 | 706414329 | 653 | True | 728 | 728 | 86.976 | 14 | 670 | 1 | chr2B.!!$R1 | 656 |
8 | TraesCS2D01G484100 | chr2A | 719536506 | 719537071 | 565 | True | 584 | 584 | 85.714 | 1 | 552 | 1 | chr2A.!!$R1 | 551 |
9 | TraesCS2D01G484100 | chr5B | 660131335 | 660131870 | 535 | True | 202 | 202 | 73.897 | 2220 | 2753 | 1 | chr5B.!!$R1 | 533 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
773 | 791 | 0.389296 | TCGTCTATGTGTTGTGCCCG | 60.389 | 55.0 | 0.0 | 0.0 | 0.0 | 6.13 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1809 | 1827 | 0.413832 | ACCTTCCTCTGCCTAGTCCA | 59.586 | 55.0 | 0.0 | 0.0 | 0.0 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 1.136695 | GAGAGACGTCCTCCTACGAGA | 59.863 | 57.143 | 13.01 | 0.00 | 45.68 | 4.04 |
66 | 68 | 1.364626 | CTAGCAGGCAAGCAAGGTCG | 61.365 | 60.000 | 4.78 | 0.00 | 36.85 | 4.79 |
69 | 71 | 1.576421 | CAGGCAAGCAAGGTCGTTC | 59.424 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
71 | 73 | 0.886490 | AGGCAAGCAAGGTCGTTCTG | 60.886 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
72 | 74 | 1.576421 | GCAAGCAAGGTCGTTCTGG | 59.424 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
74 | 76 | 0.868406 | CAAGCAAGGTCGTTCTGGTC | 59.132 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
75 | 77 | 0.468226 | AAGCAAGGTCGTTCTGGTCA | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
78 | 80 | 2.093973 | AGCAAGGTCGTTCTGGTCATAG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
89 | 92 | 0.491823 | TGGTCATAGGGGATCGGGAT | 59.508 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
90 | 93 | 0.905357 | GGTCATAGGGGATCGGGATG | 59.095 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
195 | 204 | 0.615331 | TCTCACTGGCTGGTGAATCC | 59.385 | 55.000 | 13.00 | 0.00 | 44.24 | 3.01 |
205 | 214 | 4.090588 | GTGAATCCGCGGGACCCA | 62.091 | 66.667 | 27.83 | 15.36 | 32.98 | 4.51 |
206 | 215 | 4.090588 | TGAATCCGCGGGACCCAC | 62.091 | 66.667 | 27.83 | 11.57 | 32.98 | 4.61 |
252 | 261 | 4.845580 | AGATTGCTCCGCGCCTGG | 62.846 | 66.667 | 0.00 | 0.00 | 38.05 | 4.45 |
264 | 273 | 4.621087 | GCCTGGGGTGTTTGGCCT | 62.621 | 66.667 | 3.32 | 0.00 | 39.49 | 5.19 |
268 | 277 | 4.233558 | GGGGTGTTTGGCCTGGGT | 62.234 | 66.667 | 3.32 | 0.00 | 0.00 | 4.51 |
287 | 296 | 0.821301 | TTCTGAAATGGTGGCGTGCA | 60.821 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
289 | 298 | 1.228094 | TGAAATGGTGGCGTGCAGA | 60.228 | 52.632 | 0.00 | 0.00 | 0.00 | 4.26 |
302 | 311 | 3.845259 | GCAGACCCCGGATGCGTA | 61.845 | 66.667 | 0.73 | 0.00 | 0.00 | 4.42 |
322 | 340 | 1.890625 | TAACACGCGGGTGGTGCTAT | 61.891 | 55.000 | 31.03 | 9.32 | 45.65 | 2.97 |
389 | 407 | 2.480419 | ACACATTTCTACTGCTTGCGTC | 59.520 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
403 | 421 | 3.853671 | GCTTGCGTCCTAATTTGATTGTG | 59.146 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
414 | 432 | 3.921119 | TTTGATTGTGTGTGAGCCATC | 57.079 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
456 | 474 | 0.763035 | GTGGGGCCGTATCTAATGGT | 59.237 | 55.000 | 0.00 | 0.00 | 36.53 | 3.55 |
592 | 610 | 2.229792 | GATTGGGAAGGAATGCGCATA | 58.770 | 47.619 | 25.61 | 4.50 | 0.00 | 3.14 |
594 | 612 | 0.546122 | TGGGAAGGAATGCGCATACT | 59.454 | 50.000 | 25.61 | 21.47 | 0.00 | 2.12 |
634 | 652 | 2.192861 | TGCGAGCAAGGTTGTTGGG | 61.193 | 57.895 | 0.00 | 0.00 | 0.00 | 4.12 |
635 | 653 | 2.644992 | CGAGCAAGGTTGTTGGGC | 59.355 | 61.111 | 0.00 | 0.00 | 0.00 | 5.36 |
637 | 655 | 0.605319 | CGAGCAAGGTTGTTGGGCTA | 60.605 | 55.000 | 0.00 | 0.00 | 34.44 | 3.93 |
638 | 656 | 1.839424 | GAGCAAGGTTGTTGGGCTAT | 58.161 | 50.000 | 0.00 | 0.00 | 34.44 | 2.97 |
639 | 657 | 1.745653 | GAGCAAGGTTGTTGGGCTATC | 59.254 | 52.381 | 0.00 | 0.00 | 34.44 | 2.08 |
650 | 668 | 3.763671 | GGCTATCCAAATGCCCGG | 58.236 | 61.111 | 0.00 | 0.00 | 40.71 | 5.73 |
659 | 677 | 2.639327 | AAATGCCCGGCAGCTTGAC | 61.639 | 57.895 | 18.96 | 0.00 | 43.65 | 3.18 |
670 | 688 | 2.095059 | GGCAGCTTGACACCATTTACTG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
671 | 689 | 2.813754 | GCAGCTTGACACCATTTACTGA | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
672 | 690 | 3.441572 | GCAGCTTGACACCATTTACTGAT | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
673 | 691 | 4.673580 | GCAGCTTGACACCATTTACTGATG | 60.674 | 45.833 | 0.00 | 0.00 | 0.00 | 3.07 |
674 | 692 | 3.441572 | AGCTTGACACCATTTACTGATGC | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
675 | 693 | 3.441572 | GCTTGACACCATTTACTGATGCT | 59.558 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
676 | 694 | 4.082571 | GCTTGACACCATTTACTGATGCTT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
677 | 695 | 5.375417 | TTGACACCATTTACTGATGCTTG | 57.625 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
678 | 696 | 4.650734 | TGACACCATTTACTGATGCTTGA | 58.349 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
679 | 697 | 5.255687 | TGACACCATTTACTGATGCTTGAT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
680 | 698 | 5.124297 | TGACACCATTTACTGATGCTTGATG | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
681 | 699 | 5.012239 | ACACCATTTACTGATGCTTGATGT | 58.988 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
682 | 700 | 5.124457 | ACACCATTTACTGATGCTTGATGTC | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
683 | 701 | 5.124297 | CACCATTTACTGATGCTTGATGTCA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
684 | 702 | 5.124457 | ACCATTTACTGATGCTTGATGTCAC | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
685 | 703 | 5.124297 | CCATTTACTGATGCTTGATGTCACA | 59.876 | 40.000 | 0.00 | 0.00 | 0.00 | 3.58 |
686 | 704 | 5.611796 | TTTACTGATGCTTGATGTCACAC | 57.388 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
687 | 705 | 3.130280 | ACTGATGCTTGATGTCACACA | 57.870 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
688 | 706 | 3.682696 | ACTGATGCTTGATGTCACACAT | 58.317 | 40.909 | 0.00 | 0.00 | 42.43 | 3.21 |
701 | 719 | 6.829229 | ATGTCACACATCTCATTGTTTGAT | 57.171 | 33.333 | 0.00 | 0.00 | 38.26 | 2.57 |
702 | 720 | 6.004408 | TGTCACACATCTCATTGTTTGATG | 57.996 | 37.500 | 12.08 | 12.08 | 38.26 | 3.07 |
704 | 722 | 6.039605 | TGTCACACATCTCATTGTTTGATGTT | 59.960 | 34.615 | 14.80 | 8.24 | 45.62 | 2.71 |
705 | 723 | 6.919662 | GTCACACATCTCATTGTTTGATGTTT | 59.080 | 34.615 | 14.80 | 9.62 | 45.62 | 2.83 |
706 | 724 | 6.919115 | TCACACATCTCATTGTTTGATGTTTG | 59.081 | 34.615 | 18.50 | 18.50 | 45.62 | 2.93 |
707 | 725 | 6.698329 | CACACATCTCATTGTTTGATGTTTGT | 59.302 | 34.615 | 17.47 | 12.47 | 45.62 | 2.83 |
708 | 726 | 7.861872 | CACACATCTCATTGTTTGATGTTTGTA | 59.138 | 33.333 | 17.47 | 0.00 | 45.62 | 2.41 |
709 | 727 | 8.579006 | ACACATCTCATTGTTTGATGTTTGTAT | 58.421 | 29.630 | 14.80 | 0.00 | 45.62 | 2.29 |
710 | 728 | 8.856247 | CACATCTCATTGTTTGATGTTTGTATG | 58.144 | 33.333 | 14.80 | 0.00 | 45.62 | 2.39 |
711 | 729 | 7.543172 | ACATCTCATTGTTTGATGTTTGTATGC | 59.457 | 33.333 | 12.95 | 0.00 | 45.62 | 3.14 |
712 | 730 | 6.389091 | TCTCATTGTTTGATGTTTGTATGCC | 58.611 | 36.000 | 0.00 | 0.00 | 32.72 | 4.40 |
713 | 731 | 6.209192 | TCTCATTGTTTGATGTTTGTATGCCT | 59.791 | 34.615 | 0.00 | 0.00 | 32.72 | 4.75 |
714 | 732 | 7.392953 | TCTCATTGTTTGATGTTTGTATGCCTA | 59.607 | 33.333 | 0.00 | 0.00 | 32.72 | 3.93 |
715 | 733 | 7.890515 | TCATTGTTTGATGTTTGTATGCCTAA | 58.109 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
716 | 734 | 8.363390 | TCATTGTTTGATGTTTGTATGCCTAAA | 58.637 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
717 | 735 | 7.938563 | TTGTTTGATGTTTGTATGCCTAAAC | 57.061 | 32.000 | 0.00 | 0.00 | 37.32 | 2.01 |
718 | 736 | 7.043961 | TGTTTGATGTTTGTATGCCTAAACA | 57.956 | 32.000 | 0.00 | 0.00 | 46.87 | 2.83 |
719 | 737 | 7.492524 | TGTTTGATGTTTGTATGCCTAAACAA | 58.507 | 30.769 | 6.62 | 0.00 | 46.21 | 2.83 |
720 | 738 | 7.436673 | TGTTTGATGTTTGTATGCCTAAACAAC | 59.563 | 33.333 | 6.62 | 5.21 | 46.21 | 3.32 |
721 | 739 | 6.892658 | TGATGTTTGTATGCCTAAACAACT | 57.107 | 33.333 | 6.62 | 0.00 | 46.21 | 3.16 |
722 | 740 | 7.987750 | TGATGTTTGTATGCCTAAACAACTA | 57.012 | 32.000 | 6.62 | 0.00 | 46.21 | 2.24 |
723 | 741 | 8.397575 | TGATGTTTGTATGCCTAAACAACTAA | 57.602 | 30.769 | 6.62 | 0.00 | 46.21 | 2.24 |
724 | 742 | 9.019656 | TGATGTTTGTATGCCTAAACAACTAAT | 57.980 | 29.630 | 6.62 | 0.00 | 46.21 | 1.73 |
725 | 743 | 9.289303 | GATGTTTGTATGCCTAAACAACTAATG | 57.711 | 33.333 | 6.62 | 0.00 | 46.21 | 1.90 |
726 | 744 | 8.172352 | TGTTTGTATGCCTAAACAACTAATGT | 57.828 | 30.769 | 0.00 | 0.00 | 46.82 | 2.71 |
727 | 745 | 8.079203 | TGTTTGTATGCCTAAACAACTAATGTG | 58.921 | 33.333 | 0.00 | 0.00 | 42.99 | 3.21 |
728 | 746 | 6.189677 | TGTATGCCTAAACAACTAATGTGC | 57.810 | 37.500 | 0.00 | 0.00 | 42.99 | 4.57 |
729 | 747 | 5.943416 | TGTATGCCTAAACAACTAATGTGCT | 59.057 | 36.000 | 0.00 | 0.00 | 42.99 | 4.40 |
730 | 748 | 5.567138 | ATGCCTAAACAACTAATGTGCTC | 57.433 | 39.130 | 0.00 | 0.00 | 42.99 | 4.26 |
731 | 749 | 3.756434 | TGCCTAAACAACTAATGTGCTCC | 59.244 | 43.478 | 0.00 | 0.00 | 42.99 | 4.70 |
732 | 750 | 3.756434 | GCCTAAACAACTAATGTGCTCCA | 59.244 | 43.478 | 0.00 | 0.00 | 42.99 | 3.86 |
733 | 751 | 4.399303 | GCCTAAACAACTAATGTGCTCCAT | 59.601 | 41.667 | 0.00 | 0.00 | 42.99 | 3.41 |
734 | 752 | 5.105756 | GCCTAAACAACTAATGTGCTCCATT | 60.106 | 40.000 | 7.24 | 7.24 | 42.99 | 3.16 |
735 | 753 | 6.572314 | GCCTAAACAACTAATGTGCTCCATTT | 60.572 | 38.462 | 7.36 | 0.00 | 42.99 | 2.32 |
736 | 754 | 7.029563 | CCTAAACAACTAATGTGCTCCATTTC | 58.970 | 38.462 | 7.36 | 0.00 | 42.99 | 2.17 |
737 | 755 | 6.403866 | AAACAACTAATGTGCTCCATTTCA | 57.596 | 33.333 | 7.36 | 0.00 | 42.99 | 2.69 |
738 | 756 | 6.594788 | AACAACTAATGTGCTCCATTTCAT | 57.405 | 33.333 | 7.36 | 0.00 | 42.99 | 2.57 |
739 | 757 | 7.701539 | AACAACTAATGTGCTCCATTTCATA | 57.298 | 32.000 | 7.36 | 0.00 | 42.99 | 2.15 |
740 | 758 | 7.325660 | ACAACTAATGTGCTCCATTTCATAG | 57.674 | 36.000 | 7.36 | 2.81 | 41.01 | 2.23 |
741 | 759 | 7.112122 | ACAACTAATGTGCTCCATTTCATAGA | 58.888 | 34.615 | 7.36 | 0.00 | 41.01 | 1.98 |
742 | 760 | 7.066284 | ACAACTAATGTGCTCCATTTCATAGAC | 59.934 | 37.037 | 7.36 | 0.00 | 41.01 | 2.59 |
743 | 761 | 5.755375 | ACTAATGTGCTCCATTTCATAGACG | 59.245 | 40.000 | 7.36 | 0.00 | 41.01 | 4.18 |
744 | 762 | 3.885724 | TGTGCTCCATTTCATAGACGA | 57.114 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
745 | 763 | 4.406648 | TGTGCTCCATTTCATAGACGAT | 57.593 | 40.909 | 0.00 | 0.00 | 0.00 | 3.73 |
746 | 764 | 4.371786 | TGTGCTCCATTTCATAGACGATC | 58.628 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
747 | 765 | 4.141959 | TGTGCTCCATTTCATAGACGATCA | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
748 | 766 | 4.811024 | GTGCTCCATTTCATAGACGATCAA | 59.189 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
749 | 767 | 4.811024 | TGCTCCATTTCATAGACGATCAAC | 59.189 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
768 | 786 | 1.698165 | CGTGCTCGTCTATGTGTTGT | 58.302 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
769 | 787 | 1.386748 | CGTGCTCGTCTATGTGTTGTG | 59.613 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
770 | 788 | 1.126846 | GTGCTCGTCTATGTGTTGTGC | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
771 | 789 | 0.721718 | GCTCGTCTATGTGTTGTGCC | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
772 | 790 | 1.359848 | CTCGTCTATGTGTTGTGCCC | 58.640 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
773 | 791 | 0.389296 | TCGTCTATGTGTTGTGCCCG | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
774 | 792 | 1.794222 | GTCTATGTGTTGTGCCCGC | 59.206 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
775 | 793 | 1.376683 | TCTATGTGTTGTGCCCGCC | 60.377 | 57.895 | 0.00 | 0.00 | 0.00 | 6.13 |
776 | 794 | 2.360600 | TATGTGTTGTGCCCGCCC | 60.361 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
781 | 799 | 4.639171 | GTTGTGCCCGCCCGTTTG | 62.639 | 66.667 | 0.00 | 0.00 | 0.00 | 2.93 |
787 | 805 | 2.675075 | CCCGCCCGTTTGGTTGAT | 60.675 | 61.111 | 0.00 | 0.00 | 36.04 | 2.57 |
788 | 806 | 2.566010 | CCGCCCGTTTGGTTGATG | 59.434 | 61.111 | 0.00 | 0.00 | 36.04 | 3.07 |
789 | 807 | 1.969064 | CCGCCCGTTTGGTTGATGA | 60.969 | 57.895 | 0.00 | 0.00 | 36.04 | 2.92 |
790 | 808 | 1.209127 | CGCCCGTTTGGTTGATGAC | 59.791 | 57.895 | 0.00 | 0.00 | 36.04 | 3.06 |
791 | 809 | 1.511318 | CGCCCGTTTGGTTGATGACA | 61.511 | 55.000 | 0.00 | 0.00 | 36.04 | 3.58 |
792 | 810 | 0.671251 | GCCCGTTTGGTTGATGACAA | 59.329 | 50.000 | 0.00 | 0.00 | 36.04 | 3.18 |
793 | 811 | 1.067821 | GCCCGTTTGGTTGATGACAAA | 59.932 | 47.619 | 0.00 | 0.00 | 37.77 | 2.83 |
794 | 812 | 2.288763 | GCCCGTTTGGTTGATGACAAAT | 60.289 | 45.455 | 0.00 | 0.00 | 38.65 | 2.32 |
795 | 813 | 3.057174 | GCCCGTTTGGTTGATGACAAATA | 60.057 | 43.478 | 0.00 | 0.00 | 38.65 | 1.40 |
796 | 814 | 4.381505 | GCCCGTTTGGTTGATGACAAATAT | 60.382 | 41.667 | 0.00 | 0.00 | 38.65 | 1.28 |
797 | 815 | 5.719173 | CCCGTTTGGTTGATGACAAATATT | 58.281 | 37.500 | 0.00 | 0.00 | 38.65 | 1.28 |
798 | 816 | 6.626181 | GCCCGTTTGGTTGATGACAAATATTA | 60.626 | 38.462 | 0.00 | 0.00 | 38.65 | 0.98 |
799 | 817 | 6.972328 | CCCGTTTGGTTGATGACAAATATTAG | 59.028 | 38.462 | 0.00 | 0.00 | 38.65 | 1.73 |
800 | 818 | 6.972328 | CCGTTTGGTTGATGACAAATATTAGG | 59.028 | 38.462 | 0.00 | 0.00 | 38.65 | 2.69 |
801 | 819 | 6.972328 | CGTTTGGTTGATGACAAATATTAGGG | 59.028 | 38.462 | 0.00 | 0.00 | 38.65 | 3.53 |
802 | 820 | 7.148154 | CGTTTGGTTGATGACAAATATTAGGGA | 60.148 | 37.037 | 0.00 | 0.00 | 38.65 | 4.20 |
803 | 821 | 8.695456 | GTTTGGTTGATGACAAATATTAGGGAT | 58.305 | 33.333 | 0.00 | 0.00 | 38.65 | 3.85 |
804 | 822 | 9.928618 | TTTGGTTGATGACAAATATTAGGGATA | 57.071 | 29.630 | 0.00 | 0.00 | 37.77 | 2.59 |
805 | 823 | 9.573166 | TTGGTTGATGACAAATATTAGGGATAG | 57.427 | 33.333 | 0.00 | 0.00 | 37.77 | 2.08 |
806 | 824 | 8.163408 | TGGTTGATGACAAATATTAGGGATAGG | 58.837 | 37.037 | 0.00 | 0.00 | 37.77 | 2.57 |
807 | 825 | 8.383175 | GGTTGATGACAAATATTAGGGATAGGA | 58.617 | 37.037 | 0.00 | 0.00 | 37.77 | 2.94 |
808 | 826 | 9.442047 | GTTGATGACAAATATTAGGGATAGGAG | 57.558 | 37.037 | 0.00 | 0.00 | 37.77 | 3.69 |
809 | 827 | 8.972662 | TGATGACAAATATTAGGGATAGGAGA | 57.027 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
810 | 828 | 9.040259 | TGATGACAAATATTAGGGATAGGAGAG | 57.960 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
811 | 829 | 9.261035 | GATGACAAATATTAGGGATAGGAGAGA | 57.739 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
812 | 830 | 8.657387 | TGACAAATATTAGGGATAGGAGAGAG | 57.343 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
813 | 831 | 8.456940 | TGACAAATATTAGGGATAGGAGAGAGA | 58.543 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
814 | 832 | 9.315363 | GACAAATATTAGGGATAGGAGAGAGAA | 57.685 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
815 | 833 | 9.851267 | ACAAATATTAGGGATAGGAGAGAGAAT | 57.149 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
820 | 838 | 5.959547 | AGGGATAGGAGAGAGAATTAGGT | 57.040 | 43.478 | 0.00 | 0.00 | 0.00 | 3.08 |
821 | 839 | 8.535602 | TTAGGGATAGGAGAGAGAATTAGGTA | 57.464 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
822 | 840 | 7.612953 | AGGGATAGGAGAGAGAATTAGGTAT | 57.387 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
823 | 841 | 7.418378 | AGGGATAGGAGAGAGAATTAGGTATG | 58.582 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
824 | 842 | 7.242953 | AGGGATAGGAGAGAGAATTAGGTATGA | 59.757 | 40.741 | 0.00 | 0.00 | 0.00 | 2.15 |
825 | 843 | 7.559897 | GGGATAGGAGAGAGAATTAGGTATGAG | 59.440 | 44.444 | 0.00 | 0.00 | 0.00 | 2.90 |
826 | 844 | 8.333235 | GGATAGGAGAGAGAATTAGGTATGAGA | 58.667 | 40.741 | 0.00 | 0.00 | 0.00 | 3.27 |
827 | 845 | 9.174166 | GATAGGAGAGAGAATTAGGTATGAGAC | 57.826 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
828 | 846 | 6.001460 | AGGAGAGAGAATTAGGTATGAGACG | 58.999 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
829 | 847 | 5.998981 | GGAGAGAGAATTAGGTATGAGACGA | 59.001 | 44.000 | 0.00 | 0.00 | 0.00 | 4.20 |
830 | 848 | 6.148811 | GGAGAGAGAATTAGGTATGAGACGAG | 59.851 | 46.154 | 0.00 | 0.00 | 0.00 | 4.18 |
831 | 849 | 6.833041 | AGAGAGAATTAGGTATGAGACGAGA | 58.167 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
832 | 850 | 7.284074 | AGAGAGAATTAGGTATGAGACGAGAA | 58.716 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
833 | 851 | 7.942341 | AGAGAGAATTAGGTATGAGACGAGAAT | 59.058 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
834 | 852 | 8.472007 | AGAGAATTAGGTATGAGACGAGAATT | 57.528 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
835 | 853 | 9.575868 | AGAGAATTAGGTATGAGACGAGAATTA | 57.424 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
836 | 854 | 9.834628 | GAGAATTAGGTATGAGACGAGAATTAG | 57.165 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
837 | 855 | 8.798402 | AGAATTAGGTATGAGACGAGAATTAGG | 58.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
838 | 856 | 8.707796 | AATTAGGTATGAGACGAGAATTAGGA | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 2.94 |
839 | 857 | 8.707796 | ATTAGGTATGAGACGAGAATTAGGAA | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
840 | 858 | 8.529424 | TTAGGTATGAGACGAGAATTAGGAAA | 57.471 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
841 | 859 | 6.807789 | AGGTATGAGACGAGAATTAGGAAAC | 58.192 | 40.000 | 0.00 | 0.00 | 0.00 | 2.78 |
842 | 860 | 6.380274 | AGGTATGAGACGAGAATTAGGAAACA | 59.620 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
843 | 861 | 7.039882 | GGTATGAGACGAGAATTAGGAAACAA | 58.960 | 38.462 | 0.00 | 0.00 | 0.00 | 2.83 |
844 | 862 | 7.548075 | GGTATGAGACGAGAATTAGGAAACAAA | 59.452 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
845 | 863 | 9.099454 | GTATGAGACGAGAATTAGGAAACAAAT | 57.901 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
918 | 936 | 1.063492 | TCCCGAACTACCCTGCTATCA | 60.063 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
932 | 950 | 4.880120 | CCTGCTATCACACACAAATCTCAT | 59.120 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
938 | 956 | 4.067192 | TCACACACAAATCTCATGACCAG | 58.933 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
969 | 987 | 2.093288 | TCCTGATCTGGCTGTGATTCAC | 60.093 | 50.000 | 13.60 | 9.93 | 34.56 | 3.18 |
970 | 988 | 2.355412 | CCTGATCTGGCTGTGATTCACA | 60.355 | 50.000 | 18.08 | 18.08 | 42.45 | 3.58 |
976 | 994 | 2.620115 | CTGGCTGTGATTCACAACTGTT | 59.380 | 45.455 | 19.44 | 0.00 | 44.08 | 3.16 |
977 | 995 | 2.618241 | TGGCTGTGATTCACAACTGTTC | 59.382 | 45.455 | 19.44 | 4.50 | 44.08 | 3.18 |
980 | 998 | 4.202050 | GGCTGTGATTCACAACTGTTCTTT | 60.202 | 41.667 | 19.44 | 0.00 | 44.08 | 2.52 |
986 | 1004 | 4.789095 | TTCACAACTGTTCTTTAGCGAC | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
987 | 1005 | 3.128349 | TCACAACTGTTCTTTAGCGACC | 58.872 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
1005 | 1023 | 2.821366 | GGGTGAGTCTGCATGGCG | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1007 | 1025 | 2.265739 | GTGAGTCTGCATGGCGGA | 59.734 | 61.111 | 0.00 | 0.00 | 42.08 | 5.54 |
1010 | 1028 | 0.955428 | TGAGTCTGCATGGCGGAAAC | 60.955 | 55.000 | 0.58 | 0.27 | 46.01 | 2.78 |
1011 | 1029 | 0.955428 | GAGTCTGCATGGCGGAAACA | 60.955 | 55.000 | 0.58 | 0.00 | 46.01 | 2.83 |
1026 | 1044 | 1.956477 | GAAACAGAAGGAGCAAAGGCA | 59.044 | 47.619 | 0.00 | 0.00 | 44.61 | 4.75 |
1061 | 1079 | 3.009115 | TGGTAGTGGAGCTGGGGC | 61.009 | 66.667 | 0.00 | 0.00 | 39.06 | 5.80 |
1086 | 1104 | 4.856801 | CGTGGCCCGGATCCAAGG | 62.857 | 72.222 | 13.41 | 12.99 | 35.01 | 3.61 |
1089 | 1107 | 2.359011 | GGCCCGGATCCAAGGTTT | 59.641 | 61.111 | 13.41 | 0.00 | 0.00 | 3.27 |
1095 | 1113 | 1.679032 | CCGGATCCAAGGTTTGAGGAC | 60.679 | 57.143 | 13.41 | 0.00 | 33.57 | 3.85 |
1101 | 1119 | 4.021102 | TCCAAGGTTTGAGGACAGATTC | 57.979 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1119 | 1137 | 4.725810 | AGATTCCAGGGTCTGAATCTTCAT | 59.274 | 41.667 | 8.53 | 0.00 | 36.23 | 2.57 |
1128 | 1146 | 4.163078 | GGTCTGAATCTTCATGGAGAGGAA | 59.837 | 45.833 | 10.13 | 0.00 | 35.81 | 3.36 |
1137 | 1155 | 2.091610 | TCATGGAGAGGAAGAGGACGAT | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
1182 | 1200 | 5.745769 | CGATGAATTGATTGAAGAGACGAGA | 59.254 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1212 | 1230 | 7.624360 | TGCTATTTTTAGGGTTCATACACAG | 57.376 | 36.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1213 | 1231 | 6.094881 | TGCTATTTTTAGGGTTCATACACAGC | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
1233 | 1251 | 1.839424 | GACCCTTTAGCCATGTTGCT | 58.161 | 50.000 | 1.96 | 1.96 | 45.38 | 3.91 |
1254 | 1272 | 3.585862 | TCTGTACAAAGCGATGAGGAAC | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 3.62 |
1263 | 1281 | 0.389817 | CGATGAGGAACGCTTGGACA | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1290 | 1308 | 0.539051 | AGGGAGTGATCTTCAAGGCG | 59.461 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1302 | 1320 | 3.826157 | TCTTCAAGGCGATGAAACCAAAT | 59.174 | 39.130 | 9.48 | 0.00 | 38.75 | 2.32 |
1303 | 1321 | 3.848272 | TCAAGGCGATGAAACCAAATC | 57.152 | 42.857 | 0.00 | 0.00 | 0.00 | 2.17 |
1320 | 1338 | 3.884037 | AATCTGTTCCTGGGTCAGTTT | 57.116 | 42.857 | 14.87 | 11.56 | 0.00 | 2.66 |
1362 | 1380 | 2.124695 | GTGATGAACGGAGGGCCC | 60.125 | 66.667 | 16.46 | 16.46 | 0.00 | 5.80 |
1416 | 1434 | 3.769844 | AGGAGTACGATGGTCTGACAAAT | 59.230 | 43.478 | 10.38 | 2.54 | 0.00 | 2.32 |
1419 | 1437 | 4.245660 | AGTACGATGGTCTGACAAATGTG | 58.754 | 43.478 | 10.38 | 1.15 | 0.00 | 3.21 |
1422 | 1440 | 3.273434 | CGATGGTCTGACAAATGTGGAT | 58.727 | 45.455 | 10.38 | 0.00 | 0.00 | 3.41 |
1434 | 1452 | 5.072741 | ACAAATGTGGATGAGTACAAGCTT | 58.927 | 37.500 | 0.00 | 0.00 | 0.00 | 3.74 |
1491 | 1509 | 1.283029 | CCTGAGGGGCTCATGAAGAAA | 59.717 | 52.381 | 0.00 | 0.00 | 39.92 | 2.52 |
1503 | 1521 | 5.336213 | GCTCATGAAGAAAAAGGAGATTGCA | 60.336 | 40.000 | 0.00 | 0.00 | 0.00 | 4.08 |
1509 | 1527 | 6.547141 | TGAAGAAAAAGGAGATTGCAGAGAAA | 59.453 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1535 | 1553 | 6.765915 | AGCAAGAAAAGTTGGAATATCTCC | 57.234 | 37.500 | 0.00 | 0.00 | 45.64 | 3.71 |
1539 | 1557 | 7.533426 | CAAGAAAAGTTGGAATATCTCCTGTG | 58.467 | 38.462 | 5.79 | 0.00 | 45.64 | 3.66 |
1580 | 1598 | 7.881232 | TGAAGGTCGAATAAATCCTACAAAGTT | 59.119 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1581 | 1599 | 7.845066 | AGGTCGAATAAATCCTACAAAGTTC | 57.155 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1600 | 1618 | 1.000163 | TCTTGAGAGCTCGTGTTCACC | 60.000 | 52.381 | 8.37 | 0.00 | 0.00 | 4.02 |
1602 | 1620 | 1.905637 | TGAGAGCTCGTGTTCACCTA | 58.094 | 50.000 | 8.37 | 0.00 | 0.00 | 3.08 |
1612 | 1630 | 3.745975 | TCGTGTTCACCTAAAGCTTGATG | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
1617 | 1635 | 0.704076 | ACCTAAAGCTTGATGCCCCA | 59.296 | 50.000 | 0.00 | 0.00 | 44.23 | 4.96 |
1625 | 1643 | 2.203972 | CTTGATGCCCCACTTGTGCG | 62.204 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1650 | 1668 | 2.224769 | TGTGCCTTTAACCCTGAAGGAG | 60.225 | 50.000 | 6.33 | 0.00 | 44.15 | 3.69 |
1651 | 1669 | 2.039879 | GTGCCTTTAACCCTGAAGGAGA | 59.960 | 50.000 | 6.33 | 0.00 | 44.15 | 3.71 |
1652 | 1670 | 2.305927 | TGCCTTTAACCCTGAAGGAGAG | 59.694 | 50.000 | 6.33 | 0.00 | 44.15 | 3.20 |
1661 | 1679 | 1.066286 | CCTGAAGGAGAGCAAGAGGTG | 60.066 | 57.143 | 0.00 | 0.00 | 37.39 | 4.00 |
1671 | 1689 | 1.302832 | CAAGAGGTGCCCTGTGGAC | 60.303 | 63.158 | 0.00 | 0.00 | 31.76 | 4.02 |
1679 | 1697 | 2.554344 | GGTGCCCTGTGGACTATGAAAA | 60.554 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1686 | 1704 | 5.070001 | CCTGTGGACTATGAAAAACTTCCA | 58.930 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1687 | 1705 | 5.182001 | CCTGTGGACTATGAAAAACTTCCAG | 59.818 | 44.000 | 0.00 | 0.00 | 33.80 | 3.86 |
1688 | 1706 | 5.935945 | TGTGGACTATGAAAAACTTCCAGA | 58.064 | 37.500 | 0.00 | 0.00 | 33.80 | 3.86 |
1689 | 1707 | 6.542821 | TGTGGACTATGAAAAACTTCCAGAT | 58.457 | 36.000 | 0.00 | 0.00 | 33.80 | 2.90 |
1690 | 1708 | 7.004086 | TGTGGACTATGAAAAACTTCCAGATT | 58.996 | 34.615 | 0.00 | 0.00 | 33.80 | 2.40 |
1691 | 1709 | 7.505585 | TGTGGACTATGAAAAACTTCCAGATTT | 59.494 | 33.333 | 0.00 | 0.00 | 33.80 | 2.17 |
1692 | 1710 | 8.023706 | GTGGACTATGAAAAACTTCCAGATTTC | 58.976 | 37.037 | 0.00 | 0.00 | 33.80 | 2.17 |
1693 | 1711 | 7.944554 | TGGACTATGAAAAACTTCCAGATTTCT | 59.055 | 33.333 | 0.00 | 0.00 | 33.90 | 2.52 |
1694 | 1712 | 8.239998 | GGACTATGAAAAACTTCCAGATTTCTG | 58.760 | 37.037 | 0.39 | 0.39 | 43.40 | 3.02 |
1695 | 1713 | 8.697507 | ACTATGAAAAACTTCCAGATTTCTGT | 57.302 | 30.769 | 6.81 | 0.00 | 42.27 | 3.41 |
1696 | 1714 | 8.571336 | ACTATGAAAAACTTCCAGATTTCTGTG | 58.429 | 33.333 | 6.81 | 0.00 | 42.27 | 3.66 |
1750 | 1768 | 0.180406 | GTGCGGGGATGGAATACACT | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1751 | 1769 | 0.180171 | TGCGGGGATGGAATACACTG | 59.820 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1755 | 1773 | 3.206150 | CGGGGATGGAATACACTGAAAG | 58.794 | 50.000 | 0.00 | 0.00 | 42.29 | 2.62 |
1769 | 1787 | 5.388654 | ACACTGAAAGGAGGATTGTGAATT | 58.611 | 37.500 | 0.00 | 0.00 | 39.30 | 2.17 |
1785 | 1803 | 5.067273 | TGTGAATTGGGTAACTGGTTACTG | 58.933 | 41.667 | 18.93 | 0.00 | 43.58 | 2.74 |
1801 | 1819 | 2.751166 | ACTGGTCAAGTTCGATGAGG | 57.249 | 50.000 | 0.00 | 0.00 | 34.57 | 3.86 |
1804 | 1822 | 1.071542 | TGGTCAAGTTCGATGAGGCAA | 59.928 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
1828 | 1846 | 0.413832 | TGGACTAGGCAGAGGAAGGT | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1864 | 1882 | 4.373116 | GCCGGCCAGACAGACGAA | 62.373 | 66.667 | 18.11 | 0.00 | 0.00 | 3.85 |
1865 | 1883 | 2.125912 | CCGGCCAGACAGACGAAG | 60.126 | 66.667 | 2.24 | 0.00 | 0.00 | 3.79 |
1866 | 1884 | 2.636412 | CCGGCCAGACAGACGAAGA | 61.636 | 63.158 | 2.24 | 0.00 | 0.00 | 2.87 |
1867 | 1885 | 1.153939 | CGGCCAGACAGACGAAGAG | 60.154 | 63.158 | 2.24 | 0.00 | 0.00 | 2.85 |
1868 | 1886 | 1.216710 | GGCCAGACAGACGAAGAGG | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
1869 | 1887 | 1.251527 | GGCCAGACAGACGAAGAGGA | 61.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1870 | 1888 | 0.820871 | GCCAGACAGACGAAGAGGAT | 59.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1871 | 1889 | 1.205893 | GCCAGACAGACGAAGAGGATT | 59.794 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1872 | 1890 | 2.354203 | GCCAGACAGACGAAGAGGATTT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1893 | 1911 | 1.458398 | GAAGAGGCTTTGGAAGAGGC | 58.542 | 55.000 | 0.00 | 0.00 | 39.76 | 4.70 |
1901 | 1919 | 0.324943 | TTTGGAAGAGGCGAAGGGAG | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1903 | 1921 | 2.363172 | GGAAGAGGCGAAGGGAGCT | 61.363 | 63.158 | 0.00 | 0.00 | 34.52 | 4.09 |
1932 | 1950 | 5.481824 | GGACCCAAATCCTCAAGAAAGAAAT | 59.518 | 40.000 | 0.00 | 0.00 | 35.68 | 2.17 |
1935 | 1953 | 6.153510 | ACCCAAATCCTCAAGAAAGAAATAGC | 59.846 | 38.462 | 0.00 | 0.00 | 0.00 | 2.97 |
1942 | 1960 | 6.070021 | TCCTCAAGAAAGAAATAGCATGGAGA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.71 |
1949 | 1967 | 5.643421 | AGAAATAGCATGGAGATTGACCT | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
1950 | 1968 | 6.011122 | AGAAATAGCATGGAGATTGACCTT | 57.989 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
1954 | 1972 | 2.092538 | AGCATGGAGATTGACCTTGAGG | 60.093 | 50.000 | 0.00 | 0.00 | 42.17 | 3.86 |
1957 | 1975 | 1.280133 | TGGAGATTGACCTTGAGGCTG | 59.720 | 52.381 | 0.00 | 0.00 | 39.32 | 4.85 |
1959 | 1977 | 0.034670 | AGATTGACCTTGAGGCTGCC | 60.035 | 55.000 | 11.65 | 11.65 | 39.32 | 4.85 |
1967 | 1985 | 3.565961 | TTGAGGCTGCCCGCAATGA | 62.566 | 57.895 | 16.57 | 0.00 | 44.52 | 2.57 |
1985 | 2003 | 1.007842 | TGATGGAGCACTAGTACCCCA | 59.992 | 52.381 | 0.00 | 0.00 | 0.00 | 4.96 |
2010 | 2028 | 0.687354 | GGAAGAGGCTGACTGGACAA | 59.313 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2020 | 2038 | 3.875369 | GCTGACTGGACAAGATGGGAATT | 60.875 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
2027 | 2045 | 4.951715 | TGGACAAGATGGGAATTTGATCAG | 59.048 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2033 | 2051 | 7.069085 | ACAAGATGGGAATTTGATCAGTTATGG | 59.931 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
2035 | 2053 | 6.548622 | AGATGGGAATTTGATCAGTTATGGTG | 59.451 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
2036 | 2054 | 5.579047 | TGGGAATTTGATCAGTTATGGTGT | 58.421 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
2112 | 2130 | 3.801114 | AAGGTTGAGTTGCTGGAAAAC | 57.199 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
2147 | 2165 | 3.256879 | CCAGTAGACAAGACTCAGCTCAA | 59.743 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
2174 | 2192 | 4.455533 | CCCACAAAAGATTCACGATCAGAA | 59.544 | 41.667 | 0.00 | 0.00 | 37.22 | 3.02 |
2208 | 2226 | 5.704515 | GGCTATGTCAGATGATGTTAATGCT | 59.295 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2236 | 2254 | 3.917760 | CATCGGCGACTCCCCTCC | 61.918 | 72.222 | 13.76 | 0.00 | 0.00 | 4.30 |
2283 | 2301 | 0.176680 | CCTATGCTGGAACTGTCGCT | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
2472 | 2492 | 1.892474 | GGGTTTGCTATTGTTCTGGCA | 59.108 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
2515 | 2535 | 2.287009 | CCGTGGAAGCACAAAGAACTTC | 60.287 | 50.000 | 0.00 | 0.00 | 39.25 | 3.01 |
2547 | 2567 | 0.955919 | GTTGAAACAGCGGGAGAGGG | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2636 | 2656 | 9.162764 | GTTACTTGAGAGGTTTATATCAGCAAA | 57.837 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2662 | 2682 | 2.601367 | CCTTGGGTTGTGGCTGGG | 60.601 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 1.810532 | GTGGCTGTCTCGTAGGAGG | 59.189 | 63.158 | 12.31 | 0.00 | 40.85 | 4.30 |
48 | 49 | 1.375908 | CGACCTTGCTTGCCTGCTA | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 3.49 |
56 | 58 | 0.468226 | TGACCAGAACGACCTTGCTT | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
61 | 63 | 1.486211 | CCCTATGACCAGAACGACCT | 58.514 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
66 | 68 | 1.344763 | CCGATCCCCTATGACCAGAAC | 59.655 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
69 | 71 | 0.178932 | TCCCGATCCCCTATGACCAG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
71 | 73 | 0.905357 | CATCCCGATCCCCTATGACC | 59.095 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
72 | 74 | 0.905357 | CCATCCCGATCCCCTATGAC | 59.095 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
74 | 76 | 0.252696 | TCCCATCCCGATCCCCTATG | 60.253 | 60.000 | 0.00 | 0.00 | 0.00 | 2.23 |
75 | 77 | 0.725133 | ATCCCATCCCGATCCCCTAT | 59.275 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
78 | 80 | 2.606587 | CCATCCCATCCCGATCCCC | 61.607 | 68.421 | 0.00 | 0.00 | 0.00 | 4.81 |
89 | 92 | 2.587322 | GATTCACGACGCCCATCCCA | 62.587 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
90 | 93 | 1.887707 | GATTCACGACGCCCATCCC | 60.888 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
172 | 181 | 0.325933 | TCACCAGCCAGTGAGATTGG | 59.674 | 55.000 | 2.39 | 0.00 | 41.78 | 3.16 |
205 | 214 | 1.155390 | TTCCTCTCCCACTGACGGT | 59.845 | 57.895 | 0.00 | 0.00 | 0.00 | 4.83 |
206 | 215 | 1.592223 | GTTCCTCTCCCACTGACGG | 59.408 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
208 | 217 | 0.610687 | CAGGTTCCTCTCCCACTGAC | 59.389 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
252 | 261 | 2.123033 | AACCCAGGCCAAACACCC | 60.123 | 61.111 | 5.01 | 0.00 | 0.00 | 4.61 |
264 | 273 | 0.893270 | CGCCACCATTTCAGAACCCA | 60.893 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
268 | 277 | 0.821301 | TGCACGCCACCATTTCAGAA | 60.821 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
287 | 296 | 0.677842 | GTTATACGCATCCGGGGTCT | 59.322 | 55.000 | 0.00 | 0.00 | 42.41 | 3.85 |
289 | 298 | 0.105408 | GTGTTATACGCATCCGGGGT | 59.895 | 55.000 | 0.00 | 0.00 | 45.69 | 4.95 |
302 | 311 | 1.890625 | TAGCACCACCCGCGTGTTAT | 61.891 | 55.000 | 4.92 | 0.00 | 38.41 | 1.89 |
389 | 407 | 4.218200 | TGGCTCACACACAATCAAATTAGG | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
416 | 434 | 8.899771 | CCCCACCAAAATATACTTAACACTTAG | 58.100 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
456 | 474 | 3.364441 | GCTGCACATTCGTGGCCA | 61.364 | 61.111 | 0.00 | 0.00 | 43.81 | 5.36 |
485 | 503 | 3.181468 | GGTATATAATCCAGGCGTAGGGC | 60.181 | 52.174 | 0.00 | 0.00 | 42.51 | 5.19 |
567 | 585 | 2.187100 | GCATTCCTTCCCAATCCCAAA | 58.813 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
568 | 586 | 1.864669 | GCATTCCTTCCCAATCCCAA | 58.135 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
569 | 587 | 0.395586 | CGCATTCCTTCCCAATCCCA | 60.396 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
570 | 588 | 1.738346 | GCGCATTCCTTCCCAATCCC | 61.738 | 60.000 | 0.30 | 0.00 | 0.00 | 3.85 |
571 | 589 | 1.037030 | TGCGCATTCCTTCCCAATCC | 61.037 | 55.000 | 5.66 | 0.00 | 0.00 | 3.01 |
572 | 590 | 1.035139 | ATGCGCATTCCTTCCCAATC | 58.965 | 50.000 | 19.28 | 0.00 | 0.00 | 2.67 |
573 | 591 | 1.956477 | GTATGCGCATTCCTTCCCAAT | 59.044 | 47.619 | 30.42 | 1.96 | 0.00 | 3.16 |
592 | 610 | 4.142403 | CCGCATGACCAAATCAAATACAGT | 60.142 | 41.667 | 0.00 | 0.00 | 41.93 | 3.55 |
594 | 612 | 3.761218 | ACCGCATGACCAAATCAAATACA | 59.239 | 39.130 | 0.00 | 0.00 | 41.93 | 2.29 |
622 | 640 | 2.214376 | TGGATAGCCCAACAACCTTG | 57.786 | 50.000 | 0.00 | 0.00 | 43.29 | 3.61 |
634 | 652 | 1.799258 | CTGCCGGGCATTTGGATAGC | 61.799 | 60.000 | 24.10 | 0.00 | 38.13 | 2.97 |
635 | 653 | 1.799258 | GCTGCCGGGCATTTGGATAG | 61.799 | 60.000 | 24.10 | 9.28 | 38.13 | 2.08 |
637 | 655 | 3.149648 | GCTGCCGGGCATTTGGAT | 61.150 | 61.111 | 24.10 | 0.00 | 38.13 | 3.41 |
638 | 656 | 3.884704 | AAGCTGCCGGGCATTTGGA | 62.885 | 57.895 | 24.10 | 0.00 | 38.13 | 3.53 |
639 | 657 | 3.384532 | AAGCTGCCGGGCATTTGG | 61.385 | 61.111 | 24.10 | 12.07 | 38.13 | 3.28 |
646 | 664 | 3.925630 | ATGGTGTCAAGCTGCCGGG | 62.926 | 63.158 | 2.18 | 0.00 | 0.00 | 5.73 |
650 | 668 | 2.813754 | TCAGTAAATGGTGTCAAGCTGC | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
659 | 677 | 5.124297 | TGACATCAAGCATCAGTAAATGGTG | 59.876 | 40.000 | 0.00 | 0.00 | 43.46 | 4.17 |
686 | 704 | 7.009815 | GGCATACAAACATCAAACAATGAGATG | 59.990 | 37.037 | 11.29 | 11.29 | 42.53 | 2.90 |
687 | 705 | 7.037438 | GGCATACAAACATCAAACAATGAGAT | 58.963 | 34.615 | 0.00 | 0.00 | 42.53 | 2.75 |
688 | 706 | 6.209192 | AGGCATACAAACATCAAACAATGAGA | 59.791 | 34.615 | 0.00 | 0.00 | 42.53 | 3.27 |
689 | 707 | 6.392354 | AGGCATACAAACATCAAACAATGAG | 58.608 | 36.000 | 0.00 | 0.00 | 42.53 | 2.90 |
690 | 708 | 6.343716 | AGGCATACAAACATCAAACAATGA | 57.656 | 33.333 | 0.00 | 0.00 | 43.67 | 2.57 |
691 | 709 | 8.434661 | GTTTAGGCATACAAACATCAAACAATG | 58.565 | 33.333 | 0.00 | 0.00 | 35.25 | 2.82 |
692 | 710 | 8.147058 | TGTTTAGGCATACAAACATCAAACAAT | 58.853 | 29.630 | 0.00 | 0.00 | 39.16 | 2.71 |
693 | 711 | 7.492524 | TGTTTAGGCATACAAACATCAAACAA | 58.507 | 30.769 | 0.00 | 0.00 | 39.16 | 2.83 |
694 | 712 | 7.043961 | TGTTTAGGCATACAAACATCAAACA | 57.956 | 32.000 | 0.00 | 0.00 | 39.16 | 2.83 |
695 | 713 | 7.651704 | AGTTGTTTAGGCATACAAACATCAAAC | 59.348 | 33.333 | 9.31 | 2.53 | 42.48 | 2.93 |
696 | 714 | 7.721402 | AGTTGTTTAGGCATACAAACATCAAA | 58.279 | 30.769 | 9.31 | 0.00 | 42.48 | 2.69 |
697 | 715 | 7.283625 | AGTTGTTTAGGCATACAAACATCAA | 57.716 | 32.000 | 9.31 | 0.00 | 42.48 | 2.57 |
698 | 716 | 6.892658 | AGTTGTTTAGGCATACAAACATCA | 57.107 | 33.333 | 9.31 | 0.00 | 42.48 | 3.07 |
699 | 717 | 9.289303 | CATTAGTTGTTTAGGCATACAAACATC | 57.711 | 33.333 | 0.71 | 1.10 | 42.48 | 3.06 |
700 | 718 | 8.802267 | ACATTAGTTGTTTAGGCATACAAACAT | 58.198 | 29.630 | 0.71 | 0.00 | 42.48 | 2.71 |
701 | 719 | 8.079203 | CACATTAGTTGTTTAGGCATACAAACA | 58.921 | 33.333 | 0.00 | 0.00 | 41.56 | 2.83 |
702 | 720 | 7.061789 | GCACATTAGTTGTTTAGGCATACAAAC | 59.938 | 37.037 | 0.00 | 0.00 | 36.00 | 2.93 |
703 | 721 | 7.040062 | AGCACATTAGTTGTTTAGGCATACAAA | 60.040 | 33.333 | 0.00 | 0.00 | 36.00 | 2.83 |
704 | 722 | 6.432783 | AGCACATTAGTTGTTTAGGCATACAA | 59.567 | 34.615 | 0.00 | 0.00 | 36.00 | 2.41 |
705 | 723 | 5.943416 | AGCACATTAGTTGTTTAGGCATACA | 59.057 | 36.000 | 0.00 | 0.00 | 36.00 | 2.29 |
706 | 724 | 6.436843 | AGCACATTAGTTGTTTAGGCATAC | 57.563 | 37.500 | 0.00 | 0.00 | 36.00 | 2.39 |
707 | 725 | 5.588648 | GGAGCACATTAGTTGTTTAGGCATA | 59.411 | 40.000 | 0.00 | 0.00 | 36.00 | 3.14 |
708 | 726 | 4.399303 | GGAGCACATTAGTTGTTTAGGCAT | 59.601 | 41.667 | 0.00 | 0.00 | 36.00 | 4.40 |
709 | 727 | 3.756434 | GGAGCACATTAGTTGTTTAGGCA | 59.244 | 43.478 | 0.00 | 0.00 | 36.00 | 4.75 |
710 | 728 | 3.756434 | TGGAGCACATTAGTTGTTTAGGC | 59.244 | 43.478 | 0.00 | 0.00 | 36.00 | 3.93 |
723 | 741 | 4.406648 | TCGTCTATGAAATGGAGCACAT | 57.593 | 40.909 | 0.00 | 0.00 | 43.07 | 3.21 |
724 | 742 | 3.885724 | TCGTCTATGAAATGGAGCACA | 57.114 | 42.857 | 0.00 | 0.00 | 33.10 | 4.57 |
725 | 743 | 4.371786 | TGATCGTCTATGAAATGGAGCAC | 58.628 | 43.478 | 0.00 | 0.00 | 33.10 | 4.40 |
726 | 744 | 4.670896 | TGATCGTCTATGAAATGGAGCA | 57.329 | 40.909 | 0.00 | 0.00 | 33.10 | 4.26 |
727 | 745 | 4.084849 | CGTTGATCGTCTATGAAATGGAGC | 60.085 | 45.833 | 0.00 | 0.00 | 33.10 | 4.70 |
728 | 746 | 5.567234 | CGTTGATCGTCTATGAAATGGAG | 57.433 | 43.478 | 0.00 | 0.00 | 33.10 | 3.86 |
749 | 767 | 1.386748 | CACAACACATAGACGAGCACG | 59.613 | 52.381 | 0.76 | 0.76 | 45.75 | 5.34 |
750 | 768 | 1.126846 | GCACAACACATAGACGAGCAC | 59.873 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
751 | 769 | 1.428448 | GCACAACACATAGACGAGCA | 58.572 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
752 | 770 | 0.721718 | GGCACAACACATAGACGAGC | 59.278 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
753 | 771 | 1.359848 | GGGCACAACACATAGACGAG | 58.640 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
754 | 772 | 0.389296 | CGGGCACAACACATAGACGA | 60.389 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
755 | 773 | 1.966493 | GCGGGCACAACACATAGACG | 61.966 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
756 | 774 | 1.644786 | GGCGGGCACAACACATAGAC | 61.645 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
757 | 775 | 1.376683 | GGCGGGCACAACACATAGA | 60.377 | 57.895 | 0.00 | 0.00 | 0.00 | 1.98 |
758 | 776 | 2.406616 | GGGCGGGCACAACACATAG | 61.407 | 63.158 | 3.27 | 0.00 | 0.00 | 2.23 |
759 | 777 | 2.360600 | GGGCGGGCACAACACATA | 60.361 | 61.111 | 3.27 | 0.00 | 0.00 | 2.29 |
764 | 782 | 4.639171 | CAAACGGGCGGGCACAAC | 62.639 | 66.667 | 3.27 | 0.00 | 0.00 | 3.32 |
770 | 788 | 2.675075 | ATCAACCAAACGGGCGGG | 60.675 | 61.111 | 0.00 | 0.00 | 42.05 | 6.13 |
771 | 789 | 1.969064 | TCATCAACCAAACGGGCGG | 60.969 | 57.895 | 0.00 | 0.00 | 42.05 | 6.13 |
772 | 790 | 1.209127 | GTCATCAACCAAACGGGCG | 59.791 | 57.895 | 0.00 | 0.00 | 42.05 | 6.13 |
773 | 791 | 0.671251 | TTGTCATCAACCAAACGGGC | 59.329 | 50.000 | 0.00 | 0.00 | 42.05 | 6.13 |
774 | 792 | 3.658757 | ATTTGTCATCAACCAAACGGG | 57.341 | 42.857 | 0.00 | 0.00 | 44.81 | 5.28 |
775 | 793 | 6.972328 | CCTAATATTTGTCATCAACCAAACGG | 59.028 | 38.462 | 0.00 | 0.00 | 33.73 | 4.44 |
776 | 794 | 6.972328 | CCCTAATATTTGTCATCAACCAAACG | 59.028 | 38.462 | 0.00 | 0.00 | 33.73 | 3.60 |
777 | 795 | 8.062065 | TCCCTAATATTTGTCATCAACCAAAC | 57.938 | 34.615 | 0.00 | 0.00 | 33.73 | 2.93 |
778 | 796 | 8.837099 | ATCCCTAATATTTGTCATCAACCAAA | 57.163 | 30.769 | 0.00 | 0.00 | 35.25 | 3.28 |
779 | 797 | 9.573166 | CTATCCCTAATATTTGTCATCAACCAA | 57.427 | 33.333 | 0.00 | 0.00 | 32.93 | 3.67 |
780 | 798 | 8.163408 | CCTATCCCTAATATTTGTCATCAACCA | 58.837 | 37.037 | 0.00 | 0.00 | 32.93 | 3.67 |
781 | 799 | 8.383175 | TCCTATCCCTAATATTTGTCATCAACC | 58.617 | 37.037 | 0.00 | 0.00 | 32.93 | 3.77 |
782 | 800 | 9.442047 | CTCCTATCCCTAATATTTGTCATCAAC | 57.558 | 37.037 | 0.00 | 0.00 | 32.93 | 3.18 |
783 | 801 | 9.392506 | TCTCCTATCCCTAATATTTGTCATCAA | 57.607 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
784 | 802 | 8.972662 | TCTCCTATCCCTAATATTTGTCATCA | 57.027 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
785 | 803 | 9.261035 | TCTCTCCTATCCCTAATATTTGTCATC | 57.739 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
786 | 804 | 9.265862 | CTCTCTCCTATCCCTAATATTTGTCAT | 57.734 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
787 | 805 | 8.456940 | TCTCTCTCCTATCCCTAATATTTGTCA | 58.543 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
788 | 806 | 8.887264 | TCTCTCTCCTATCCCTAATATTTGTC | 57.113 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
789 | 807 | 9.851267 | ATTCTCTCTCCTATCCCTAATATTTGT | 57.149 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
794 | 812 | 9.141489 | ACCTAATTCTCTCTCCTATCCCTAATA | 57.859 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
795 | 813 | 8.018389 | ACCTAATTCTCTCTCCTATCCCTAAT | 57.982 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
796 | 814 | 7.423443 | ACCTAATTCTCTCTCCTATCCCTAA | 57.577 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
797 | 815 | 8.561769 | CATACCTAATTCTCTCTCCTATCCCTA | 58.438 | 40.741 | 0.00 | 0.00 | 0.00 | 3.53 |
798 | 816 | 5.959547 | ACCTAATTCTCTCTCCTATCCCT | 57.040 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
799 | 817 | 7.415086 | TCATACCTAATTCTCTCTCCTATCCC | 58.585 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
800 | 818 | 8.333235 | TCTCATACCTAATTCTCTCTCCTATCC | 58.667 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
801 | 819 | 9.174166 | GTCTCATACCTAATTCTCTCTCCTATC | 57.826 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
802 | 820 | 7.827236 | CGTCTCATACCTAATTCTCTCTCCTAT | 59.173 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
803 | 821 | 7.016366 | TCGTCTCATACCTAATTCTCTCTCCTA | 59.984 | 40.741 | 0.00 | 0.00 | 0.00 | 2.94 |
804 | 822 | 6.001460 | CGTCTCATACCTAATTCTCTCTCCT | 58.999 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
805 | 823 | 5.998981 | TCGTCTCATACCTAATTCTCTCTCC | 59.001 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
806 | 824 | 6.932400 | TCTCGTCTCATACCTAATTCTCTCTC | 59.068 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
807 | 825 | 6.833041 | TCTCGTCTCATACCTAATTCTCTCT | 58.167 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
808 | 826 | 7.499321 | TTCTCGTCTCATACCTAATTCTCTC | 57.501 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
809 | 827 | 8.472007 | AATTCTCGTCTCATACCTAATTCTCT | 57.528 | 34.615 | 0.00 | 0.00 | 0.00 | 3.10 |
810 | 828 | 9.834628 | CTAATTCTCGTCTCATACCTAATTCTC | 57.165 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
811 | 829 | 8.798402 | CCTAATTCTCGTCTCATACCTAATTCT | 58.202 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
812 | 830 | 8.794553 | TCCTAATTCTCGTCTCATACCTAATTC | 58.205 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
813 | 831 | 8.707796 | TCCTAATTCTCGTCTCATACCTAATT | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
814 | 832 | 8.707796 | TTCCTAATTCTCGTCTCATACCTAAT | 57.292 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
815 | 833 | 8.411683 | GTTTCCTAATTCTCGTCTCATACCTAA | 58.588 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
816 | 834 | 7.558807 | TGTTTCCTAATTCTCGTCTCATACCTA | 59.441 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
817 | 835 | 6.380274 | TGTTTCCTAATTCTCGTCTCATACCT | 59.620 | 38.462 | 0.00 | 0.00 | 0.00 | 3.08 |
818 | 836 | 6.570692 | TGTTTCCTAATTCTCGTCTCATACC | 58.429 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
819 | 837 | 8.475331 | TTTGTTTCCTAATTCTCGTCTCATAC | 57.525 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
820 | 838 | 9.314321 | GATTTGTTTCCTAATTCTCGTCTCATA | 57.686 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
821 | 839 | 7.281100 | GGATTTGTTTCCTAATTCTCGTCTCAT | 59.719 | 37.037 | 0.00 | 0.00 | 32.68 | 2.90 |
822 | 840 | 6.594159 | GGATTTGTTTCCTAATTCTCGTCTCA | 59.406 | 38.462 | 0.00 | 0.00 | 32.68 | 3.27 |
823 | 841 | 6.037281 | GGGATTTGTTTCCTAATTCTCGTCTC | 59.963 | 42.308 | 0.00 | 0.00 | 35.97 | 3.36 |
824 | 842 | 5.880887 | GGGATTTGTTTCCTAATTCTCGTCT | 59.119 | 40.000 | 0.00 | 0.00 | 35.97 | 4.18 |
825 | 843 | 5.066117 | GGGGATTTGTTTCCTAATTCTCGTC | 59.934 | 44.000 | 0.00 | 0.00 | 35.97 | 4.20 |
826 | 844 | 4.948004 | GGGGATTTGTTTCCTAATTCTCGT | 59.052 | 41.667 | 0.00 | 0.00 | 35.97 | 4.18 |
827 | 845 | 5.193679 | AGGGGATTTGTTTCCTAATTCTCG | 58.806 | 41.667 | 0.00 | 0.00 | 35.97 | 4.04 |
828 | 846 | 6.773200 | CCTAGGGGATTTGTTTCCTAATTCTC | 59.227 | 42.308 | 0.00 | 0.00 | 35.97 | 2.87 |
829 | 847 | 6.673583 | CCTAGGGGATTTGTTTCCTAATTCT | 58.326 | 40.000 | 0.00 | 0.00 | 35.97 | 2.40 |
830 | 848 | 5.302059 | GCCTAGGGGATTTGTTTCCTAATTC | 59.698 | 44.000 | 11.72 | 0.00 | 35.97 | 2.17 |
831 | 849 | 5.208890 | GCCTAGGGGATTTGTTTCCTAATT | 58.791 | 41.667 | 11.72 | 0.00 | 35.97 | 1.40 |
832 | 850 | 4.231890 | TGCCTAGGGGATTTGTTTCCTAAT | 59.768 | 41.667 | 11.72 | 0.00 | 35.97 | 1.73 |
833 | 851 | 3.594232 | TGCCTAGGGGATTTGTTTCCTAA | 59.406 | 43.478 | 11.72 | 0.00 | 35.97 | 2.69 |
834 | 852 | 3.194620 | TGCCTAGGGGATTTGTTTCCTA | 58.805 | 45.455 | 11.72 | 0.00 | 35.97 | 2.94 |
835 | 853 | 2.000048 | TGCCTAGGGGATTTGTTTCCT | 59.000 | 47.619 | 11.72 | 0.00 | 35.97 | 3.36 |
836 | 854 | 2.379005 | CTGCCTAGGGGATTTGTTTCC | 58.621 | 52.381 | 11.72 | 0.00 | 34.83 | 3.13 |
837 | 855 | 1.751351 | GCTGCCTAGGGGATTTGTTTC | 59.249 | 52.381 | 11.72 | 0.00 | 33.58 | 2.78 |
838 | 856 | 1.359130 | AGCTGCCTAGGGGATTTGTTT | 59.641 | 47.619 | 11.72 | 0.00 | 33.58 | 2.83 |
839 | 857 | 1.002857 | AGCTGCCTAGGGGATTTGTT | 58.997 | 50.000 | 11.72 | 0.00 | 33.58 | 2.83 |
840 | 858 | 1.771255 | CTAGCTGCCTAGGGGATTTGT | 59.229 | 52.381 | 11.72 | 0.00 | 37.90 | 2.83 |
841 | 859 | 2.557920 | CTAGCTGCCTAGGGGATTTG | 57.442 | 55.000 | 11.72 | 0.00 | 37.90 | 2.32 |
910 | 928 | 5.583457 | TCATGAGATTTGTGTGTGATAGCAG | 59.417 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
918 | 936 | 4.356405 | TCTGGTCATGAGATTTGTGTGT | 57.644 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
932 | 950 | 2.121948 | CAGGAGATCCCAATCTGGTCA | 58.878 | 52.381 | 0.00 | 0.00 | 42.46 | 4.02 |
969 | 987 | 1.459592 | CCGGTCGCTAAAGAACAGTTG | 59.540 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
970 | 988 | 1.607251 | CCCGGTCGCTAAAGAACAGTT | 60.607 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
976 | 994 | 0.896940 | ACTCACCCGGTCGCTAAAGA | 60.897 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
977 | 995 | 0.458025 | GACTCACCCGGTCGCTAAAG | 60.458 | 60.000 | 0.00 | 0.00 | 0.00 | 1.85 |
980 | 998 | 2.044555 | CAGACTCACCCGGTCGCTA | 61.045 | 63.158 | 0.00 | 0.00 | 38.58 | 4.26 |
986 | 1004 | 2.124983 | CCATGCAGACTCACCCGG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
987 | 1005 | 2.821366 | GCCATGCAGACTCACCCG | 60.821 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
1005 | 1023 | 1.270826 | GCCTTTGCTCCTTCTGTTTCC | 59.729 | 52.381 | 0.00 | 0.00 | 33.53 | 3.13 |
1007 | 1025 | 1.683385 | GTGCCTTTGCTCCTTCTGTTT | 59.317 | 47.619 | 0.00 | 0.00 | 38.71 | 2.83 |
1010 | 1028 | 1.580845 | CGGTGCCTTTGCTCCTTCTG | 61.581 | 60.000 | 4.39 | 0.00 | 46.64 | 3.02 |
1011 | 1029 | 1.302832 | CGGTGCCTTTGCTCCTTCT | 60.303 | 57.895 | 4.39 | 0.00 | 46.64 | 2.85 |
1095 | 1113 | 4.080695 | TGAAGATTCAGACCCTGGAATCTG | 60.081 | 45.833 | 15.29 | 17.26 | 43.16 | 2.90 |
1101 | 1119 | 2.507058 | TCCATGAAGATTCAGACCCTGG | 59.493 | 50.000 | 0.00 | 3.99 | 41.08 | 4.45 |
1119 | 1137 | 2.497675 | CAAATCGTCCTCTTCCTCTCCA | 59.502 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1128 | 1146 | 4.256920 | CTGACAAATCCAAATCGTCCTCT | 58.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.69 |
1137 | 1155 | 4.002982 | CGATCTCACCTGACAAATCCAAA | 58.997 | 43.478 | 0.00 | 0.00 | 0.00 | 3.28 |
1182 | 1200 | 7.919385 | ATGAACCCTAAAAATAGCAATCCAT | 57.081 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1212 | 1230 | 0.451783 | CAACATGGCTAAAGGGTCGC | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1213 | 1231 | 0.451783 | GCAACATGGCTAAAGGGTCG | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1233 | 1251 | 3.585862 | GTTCCTCATCGCTTTGTACAGA | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1254 | 1272 | 2.591429 | TGTGCTGGTGTCCAAGCG | 60.591 | 61.111 | 0.00 | 0.00 | 32.91 | 4.68 |
1263 | 1281 | 0.546267 | AGATCACTCCCTGTGCTGGT | 60.546 | 55.000 | 0.00 | 0.00 | 45.81 | 4.00 |
1290 | 1308 | 4.082026 | CCCAGGAACAGATTTGGTTTCATC | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1302 | 1320 | 3.650942 | ACATAAACTGACCCAGGAACAGA | 59.349 | 43.478 | 16.34 | 0.00 | 35.51 | 3.41 |
1303 | 1321 | 3.753272 | CACATAAACTGACCCAGGAACAG | 59.247 | 47.826 | 10.15 | 10.15 | 35.51 | 3.16 |
1320 | 1338 | 3.342377 | TTCCAATCGCCAAGACACATA | 57.658 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
1362 | 1380 | 1.202031 | GCTGCGTTCCGAAATAACCAG | 60.202 | 52.381 | 0.00 | 0.00 | 32.70 | 4.00 |
1416 | 1434 | 4.507710 | GATCAAGCTTGTACTCATCCACA | 58.492 | 43.478 | 25.19 | 2.43 | 0.00 | 4.17 |
1419 | 1437 | 2.541762 | GCGATCAAGCTTGTACTCATCC | 59.458 | 50.000 | 25.19 | 10.79 | 0.00 | 3.51 |
1422 | 1440 | 2.741759 | TGCGATCAAGCTTGTACTCA | 57.258 | 45.000 | 25.19 | 17.35 | 38.13 | 3.41 |
1482 | 1500 | 6.150641 | TCTCTGCAATCTCCTTTTTCTTCATG | 59.849 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
1491 | 1509 | 5.948162 | TGCTATTTTCTCTGCAATCTCCTTT | 59.052 | 36.000 | 0.00 | 0.00 | 32.12 | 3.11 |
1503 | 1521 | 7.823745 | TCCAACTTTTCTTGCTATTTTCTCT | 57.176 | 32.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1509 | 1527 | 8.907885 | GGAGATATTCCAACTTTTCTTGCTATT | 58.092 | 33.333 | 0.00 | 0.00 | 46.01 | 1.73 |
1531 | 1549 | 2.972021 | TGACAATGACCTTCACAGGAGA | 59.028 | 45.455 | 0.00 | 0.00 | 44.19 | 3.71 |
1535 | 1553 | 5.335426 | CCTTCATTGACAATGACCTTCACAG | 60.335 | 44.000 | 26.72 | 19.25 | 46.90 | 3.66 |
1539 | 1557 | 4.142816 | CGACCTTCATTGACAATGACCTTC | 60.143 | 45.833 | 26.72 | 20.33 | 46.90 | 3.46 |
1566 | 1584 | 6.538263 | AGCTCTCAAGAACTTTGTAGGATTT | 58.462 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1580 | 1598 | 1.000163 | GGTGAACACGAGCTCTCAAGA | 60.000 | 52.381 | 12.85 | 0.00 | 0.00 | 3.02 |
1581 | 1599 | 1.000283 | AGGTGAACACGAGCTCTCAAG | 60.000 | 52.381 | 12.85 | 0.00 | 0.00 | 3.02 |
1600 | 1618 | 2.134789 | AGTGGGGCATCAAGCTTTAG | 57.865 | 50.000 | 0.00 | 0.00 | 44.79 | 1.85 |
1602 | 1620 | 0.971386 | CAAGTGGGGCATCAAGCTTT | 59.029 | 50.000 | 0.00 | 0.00 | 44.79 | 3.51 |
1612 | 1630 | 1.591327 | CAAAACGCACAAGTGGGGC | 60.591 | 57.895 | 19.38 | 2.93 | 46.30 | 5.80 |
1617 | 1635 | 0.530288 | AAGGCACAAAACGCACAAGT | 59.470 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1625 | 1643 | 4.368315 | CTTCAGGGTTAAAGGCACAAAAC | 58.632 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
1661 | 1679 | 3.421844 | AGTTTTTCATAGTCCACAGGGC | 58.578 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
1665 | 1683 | 5.935945 | TCTGGAAGTTTTTCATAGTCCACA | 58.064 | 37.500 | 0.00 | 0.00 | 34.90 | 4.17 |
1686 | 1704 | 5.704515 | CAGACCACAGAAATCACAGAAATCT | 59.295 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1687 | 1705 | 5.702670 | TCAGACCACAGAAATCACAGAAATC | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1688 | 1706 | 5.624159 | TCAGACCACAGAAATCACAGAAAT | 58.376 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
1689 | 1707 | 5.034852 | TCAGACCACAGAAATCACAGAAA | 57.965 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
1690 | 1708 | 4.687901 | TCAGACCACAGAAATCACAGAA | 57.312 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
1691 | 1709 | 4.564199 | CCATCAGACCACAGAAATCACAGA | 60.564 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
1692 | 1710 | 3.688185 | CCATCAGACCACAGAAATCACAG | 59.312 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
1693 | 1711 | 3.559811 | CCCATCAGACCACAGAAATCACA | 60.560 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
1694 | 1712 | 3.012518 | CCCATCAGACCACAGAAATCAC | 58.987 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1695 | 1713 | 2.025981 | CCCCATCAGACCACAGAAATCA | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1696 | 1714 | 2.648059 | CCCCATCAGACCACAGAAATC | 58.352 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
1750 | 1768 | 4.088634 | CCCAATTCACAATCCTCCTTTCA | 58.911 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
1751 | 1769 | 4.089361 | ACCCAATTCACAATCCTCCTTTC | 58.911 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
1755 | 1773 | 4.399303 | CAGTTACCCAATTCACAATCCTCC | 59.601 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1769 | 1787 | 2.692024 | TGACCAGTAACCAGTTACCCA | 58.308 | 47.619 | 15.34 | 7.51 | 44.79 | 4.51 |
1785 | 1803 | 1.464997 | GTTGCCTCATCGAACTTGACC | 59.535 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
1801 | 1819 | 3.462021 | CTCTGCCTAGTCCATTAGTTGC | 58.538 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1804 | 1822 | 3.689872 | TCCTCTGCCTAGTCCATTAGT | 57.310 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
1806 | 1824 | 3.309296 | CCTTCCTCTGCCTAGTCCATTA | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1807 | 1825 | 2.122768 | CCTTCCTCTGCCTAGTCCATT | 58.877 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
1808 | 1826 | 1.008938 | ACCTTCCTCTGCCTAGTCCAT | 59.991 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1809 | 1827 | 0.413832 | ACCTTCCTCTGCCTAGTCCA | 59.586 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1810 | 1828 | 0.827368 | CACCTTCCTCTGCCTAGTCC | 59.173 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1811 | 1829 | 1.478916 | GTCACCTTCCTCTGCCTAGTC | 59.521 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
1812 | 1830 | 1.203187 | TGTCACCTTCCTCTGCCTAGT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1813 | 1831 | 1.480137 | CTGTCACCTTCCTCTGCCTAG | 59.520 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
1814 | 1832 | 1.203187 | ACTGTCACCTTCCTCTGCCTA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.93 |
1852 | 1870 | 3.257393 | CAAATCCTCTTCGTCTGTCTGG | 58.743 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1856 | 1874 | 3.578716 | TCTTCCAAATCCTCTTCGTCTGT | 59.421 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1861 | 1879 | 2.093235 | AGCCTCTTCCAAATCCTCTTCG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1862 | 1880 | 3.643199 | AGCCTCTTCCAAATCCTCTTC | 57.357 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
1863 | 1881 | 4.085009 | CAAAGCCTCTTCCAAATCCTCTT | 58.915 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
1864 | 1882 | 3.563043 | CCAAAGCCTCTTCCAAATCCTCT | 60.563 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
1865 | 1883 | 2.757314 | CCAAAGCCTCTTCCAAATCCTC | 59.243 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1866 | 1884 | 2.379907 | TCCAAAGCCTCTTCCAAATCCT | 59.620 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
1867 | 1885 | 2.807676 | TCCAAAGCCTCTTCCAAATCC | 58.192 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
1868 | 1886 | 4.082125 | TCTTCCAAAGCCTCTTCCAAATC | 58.918 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1869 | 1887 | 4.085009 | CTCTTCCAAAGCCTCTTCCAAAT | 58.915 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1870 | 1888 | 3.490348 | CTCTTCCAAAGCCTCTTCCAAA | 58.510 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
1871 | 1889 | 2.224867 | CCTCTTCCAAAGCCTCTTCCAA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1872 | 1890 | 1.352352 | CCTCTTCCAAAGCCTCTTCCA | 59.648 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1893 | 1911 | 3.009115 | TCCCCCAAGCTCCCTTCG | 61.009 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
1913 | 1931 | 7.705325 | CCATGCTATTTCTTTCTTGAGGATTTG | 59.295 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
1917 | 1935 | 6.065976 | TCCATGCTATTTCTTTCTTGAGGA | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
1919 | 1937 | 7.804843 | ATCTCCATGCTATTTCTTTCTTGAG | 57.195 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1932 | 1950 | 3.135348 | CCTCAAGGTCAATCTCCATGCTA | 59.865 | 47.826 | 0.00 | 0.00 | 0.00 | 3.49 |
1935 | 1953 | 2.092538 | AGCCTCAAGGTCAATCTCCATG | 60.093 | 50.000 | 0.00 | 0.00 | 37.57 | 3.66 |
1942 | 1960 | 1.000396 | GGGCAGCCTCAAGGTCAAT | 60.000 | 57.895 | 12.43 | 0.00 | 37.57 | 2.57 |
1957 | 1975 | 2.829914 | TGCTCCATCATTGCGGGC | 60.830 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
1959 | 1977 | 1.224075 | CTAGTGCTCCATCATTGCGG | 58.776 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1962 | 1980 | 3.495100 | GGGGTACTAGTGCTCCATCATTG | 60.495 | 52.174 | 23.75 | 0.00 | 35.73 | 2.82 |
1967 | 1985 | 2.119495 | CTTGGGGTACTAGTGCTCCAT | 58.881 | 52.381 | 30.36 | 0.00 | 45.30 | 3.41 |
2003 | 2021 | 4.951715 | TGATCAAATTCCCATCTTGTCCAG | 59.048 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2010 | 2028 | 6.548622 | CACCATAACTGATCAAATTCCCATCT | 59.451 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2020 | 2038 | 5.755409 | ACACCTACACCATAACTGATCAA | 57.245 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2027 | 2045 | 4.939439 | CCTGGTTAACACCTACACCATAAC | 59.061 | 45.833 | 8.10 | 0.00 | 44.61 | 1.89 |
2033 | 2051 | 2.774687 | CCACCTGGTTAACACCTACAC | 58.225 | 52.381 | 8.10 | 0.00 | 44.61 | 2.90 |
2035 | 2053 | 1.072648 | TGCCACCTGGTTAACACCTAC | 59.927 | 52.381 | 8.10 | 0.00 | 44.61 | 3.18 |
2036 | 2054 | 1.349688 | CTGCCACCTGGTTAACACCTA | 59.650 | 52.381 | 8.10 | 0.00 | 44.61 | 3.08 |
2112 | 2130 | 7.436673 | GTCTTGTCTACTGGTTCATTAGCTATG | 59.563 | 40.741 | 0.00 | 0.00 | 35.45 | 2.23 |
2147 | 2165 | 1.953686 | CGTGAATCTTTTGTGGGGTGT | 59.046 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
2174 | 2192 | 5.663106 | TCATCTGACATAGCCTTAAACCTCT | 59.337 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2208 | 2226 | 1.135199 | GTCGCCGATGTACTTGAGGAA | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2236 | 2254 | 2.046892 | CTCCTGGCGAACACCCTG | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2283 | 2301 | 2.497293 | CGCGGTACTGGCCATACA | 59.503 | 61.111 | 5.51 | 0.00 | 0.00 | 2.29 |
2448 | 2468 | 3.099141 | CAGAACAATAGCAAACCCCCAT | 58.901 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2472 | 2492 | 3.242011 | ACTTGCAGGACAATGGGATTTT | 58.758 | 40.909 | 1.40 | 0.00 | 37.72 | 1.82 |
2515 | 2535 | 4.221342 | CTGTTTCAACCGACACATCAATG | 58.779 | 43.478 | 0.00 | 0.00 | 31.60 | 2.82 |
2547 | 2567 | 8.579863 | CATAAAATCCAGTAAATCTCCATTCCC | 58.420 | 37.037 | 0.00 | 0.00 | 0.00 | 3.97 |
2636 | 2656 | 1.350310 | ACAACCCAAGGGAGACGGTT | 61.350 | 55.000 | 13.15 | 0.00 | 39.18 | 4.44 |
2662 | 2682 | 5.176590 | GCGAGTACAAGATCTCATGAAATCC | 59.823 | 44.000 | 5.37 | 0.00 | 0.00 | 3.01 |
2715 | 2736 | 6.417930 | CACTAAAATTCTGCATCATGCTCATG | 59.582 | 38.462 | 11.84 | 3.55 | 45.31 | 3.07 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.