Multiple sequence alignment - TraesCS2D01G484100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G484100 chr2D 100.000 2753 0 0 1 2753 585473134 585470382 0.000000e+00 5084.0
1 TraesCS2D01G484100 chr2D 84.699 366 43 8 25 378 585501323 585500959 1.210000e-93 353.0
2 TraesCS2D01G484100 chr2D 74.033 543 124 16 2220 2753 560851096 560851630 3.590000e-49 206.0
3 TraesCS2D01G484100 chr5D 91.619 1909 126 16 847 2753 133312355 133314231 0.000000e+00 2608.0
4 TraesCS2D01G484100 chr6B 93.296 537 34 2 2219 2753 675209410 675208874 0.000000e+00 791.0
5 TraesCS2D01G484100 chr4A 93.296 537 34 2 2219 2753 674445427 674444891 0.000000e+00 791.0
6 TraesCS2D01G484100 chr3B 93.296 537 34 2 2219 2753 546914385 546913849 0.000000e+00 791.0
7 TraesCS2D01G484100 chr7B 93.110 537 35 2 2219 2753 743927741 743928277 0.000000e+00 785.0
8 TraesCS2D01G484100 chr7B 91.892 37 3 0 2246 2282 684964644 684964680 5.000000e-03 52.8
9 TraesCS2D01G484100 chr2B 86.976 668 62 9 14 670 706414329 706413676 0.000000e+00 728.0
10 TraesCS2D01G484100 chr2A 85.714 567 65 5 1 552 719537071 719536506 3.950000e-163 584.0
11 TraesCS2D01G484100 chr5B 73.897 544 124 17 2220 2753 660131870 660131335 4.650000e-48 202.0
12 TraesCS2D01G484100 chr3D 73.888 517 117 18 2245 2751 300912997 300912489 1.010000e-44 191.0
13 TraesCS2D01G484100 chr1B 73.383 541 126 17 2223 2753 13425409 13424877 4.680000e-43 185.0
14 TraesCS2D01G484100 chr4D 73.674 509 110 19 2256 2751 484471654 484471157 2.820000e-40 176.0
15 TraesCS2D01G484100 chr3A 73.256 430 105 8 1105 1529 709115734 709116158 6.140000e-32 148.0
16 TraesCS2D01G484100 chr5A 72.584 507 118 20 2255 2751 603509631 603509136 2.210000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G484100 chr2D 585470382 585473134 2752 True 5084 5084 100.000 1 2753 1 chr2D.!!$R1 2752
1 TraesCS2D01G484100 chr2D 560851096 560851630 534 False 206 206 74.033 2220 2753 1 chr2D.!!$F1 533
2 TraesCS2D01G484100 chr5D 133312355 133314231 1876 False 2608 2608 91.619 847 2753 1 chr5D.!!$F1 1906
3 TraesCS2D01G484100 chr6B 675208874 675209410 536 True 791 791 93.296 2219 2753 1 chr6B.!!$R1 534
4 TraesCS2D01G484100 chr4A 674444891 674445427 536 True 791 791 93.296 2219 2753 1 chr4A.!!$R1 534
5 TraesCS2D01G484100 chr3B 546913849 546914385 536 True 791 791 93.296 2219 2753 1 chr3B.!!$R1 534
6 TraesCS2D01G484100 chr7B 743927741 743928277 536 False 785 785 93.110 2219 2753 1 chr7B.!!$F2 534
7 TraesCS2D01G484100 chr2B 706413676 706414329 653 True 728 728 86.976 14 670 1 chr2B.!!$R1 656
8 TraesCS2D01G484100 chr2A 719536506 719537071 565 True 584 584 85.714 1 552 1 chr2A.!!$R1 551
9 TraesCS2D01G484100 chr5B 660131335 660131870 535 True 202 202 73.897 2220 2753 1 chr5B.!!$R1 533


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 791 0.389296 TCGTCTATGTGTTGTGCCCG 60.389 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1827 0.413832 ACCTTCCTCTGCCTAGTCCA 59.586 55.0 0.0 0.0 0.0 4.02 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.136695 GAGAGACGTCCTCCTACGAGA 59.863 57.143 13.01 0.00 45.68 4.04
66 68 1.364626 CTAGCAGGCAAGCAAGGTCG 61.365 60.000 4.78 0.00 36.85 4.79
69 71 1.576421 CAGGCAAGCAAGGTCGTTC 59.424 57.895 0.00 0.00 0.00 3.95
71 73 0.886490 AGGCAAGCAAGGTCGTTCTG 60.886 55.000 0.00 0.00 0.00 3.02
72 74 1.576421 GCAAGCAAGGTCGTTCTGG 59.424 57.895 0.00 0.00 0.00 3.86
74 76 0.868406 CAAGCAAGGTCGTTCTGGTC 59.132 55.000 0.00 0.00 0.00 4.02
75 77 0.468226 AAGCAAGGTCGTTCTGGTCA 59.532 50.000 0.00 0.00 0.00 4.02
78 80 2.093973 AGCAAGGTCGTTCTGGTCATAG 60.094 50.000 0.00 0.00 0.00 2.23
89 92 0.491823 TGGTCATAGGGGATCGGGAT 59.508 55.000 0.00 0.00 0.00 3.85
90 93 0.905357 GGTCATAGGGGATCGGGATG 59.095 60.000 0.00 0.00 0.00 3.51
195 204 0.615331 TCTCACTGGCTGGTGAATCC 59.385 55.000 13.00 0.00 44.24 3.01
205 214 4.090588 GTGAATCCGCGGGACCCA 62.091 66.667 27.83 15.36 32.98 4.51
206 215 4.090588 TGAATCCGCGGGACCCAC 62.091 66.667 27.83 11.57 32.98 4.61
252 261 4.845580 AGATTGCTCCGCGCCTGG 62.846 66.667 0.00 0.00 38.05 4.45
264 273 4.621087 GCCTGGGGTGTTTGGCCT 62.621 66.667 3.32 0.00 39.49 5.19
268 277 4.233558 GGGGTGTTTGGCCTGGGT 62.234 66.667 3.32 0.00 0.00 4.51
287 296 0.821301 TTCTGAAATGGTGGCGTGCA 60.821 50.000 0.00 0.00 0.00 4.57
289 298 1.228094 TGAAATGGTGGCGTGCAGA 60.228 52.632 0.00 0.00 0.00 4.26
302 311 3.845259 GCAGACCCCGGATGCGTA 61.845 66.667 0.73 0.00 0.00 4.42
322 340 1.890625 TAACACGCGGGTGGTGCTAT 61.891 55.000 31.03 9.32 45.65 2.97
389 407 2.480419 ACACATTTCTACTGCTTGCGTC 59.520 45.455 0.00 0.00 0.00 5.19
403 421 3.853671 GCTTGCGTCCTAATTTGATTGTG 59.146 43.478 0.00 0.00 0.00 3.33
414 432 3.921119 TTTGATTGTGTGTGAGCCATC 57.079 42.857 0.00 0.00 0.00 3.51
456 474 0.763035 GTGGGGCCGTATCTAATGGT 59.237 55.000 0.00 0.00 36.53 3.55
592 610 2.229792 GATTGGGAAGGAATGCGCATA 58.770 47.619 25.61 4.50 0.00 3.14
594 612 0.546122 TGGGAAGGAATGCGCATACT 59.454 50.000 25.61 21.47 0.00 2.12
634 652 2.192861 TGCGAGCAAGGTTGTTGGG 61.193 57.895 0.00 0.00 0.00 4.12
635 653 2.644992 CGAGCAAGGTTGTTGGGC 59.355 61.111 0.00 0.00 0.00 5.36
637 655 0.605319 CGAGCAAGGTTGTTGGGCTA 60.605 55.000 0.00 0.00 34.44 3.93
638 656 1.839424 GAGCAAGGTTGTTGGGCTAT 58.161 50.000 0.00 0.00 34.44 2.97
639 657 1.745653 GAGCAAGGTTGTTGGGCTATC 59.254 52.381 0.00 0.00 34.44 2.08
650 668 3.763671 GGCTATCCAAATGCCCGG 58.236 61.111 0.00 0.00 40.71 5.73
659 677 2.639327 AAATGCCCGGCAGCTTGAC 61.639 57.895 18.96 0.00 43.65 3.18
670 688 2.095059 GGCAGCTTGACACCATTTACTG 60.095 50.000 0.00 0.00 0.00 2.74
671 689 2.813754 GCAGCTTGACACCATTTACTGA 59.186 45.455 0.00 0.00 0.00 3.41
672 690 3.441572 GCAGCTTGACACCATTTACTGAT 59.558 43.478 0.00 0.00 0.00 2.90
673 691 4.673580 GCAGCTTGACACCATTTACTGATG 60.674 45.833 0.00 0.00 0.00 3.07
674 692 3.441572 AGCTTGACACCATTTACTGATGC 59.558 43.478 0.00 0.00 0.00 3.91
675 693 3.441572 GCTTGACACCATTTACTGATGCT 59.558 43.478 0.00 0.00 0.00 3.79
676 694 4.082571 GCTTGACACCATTTACTGATGCTT 60.083 41.667 0.00 0.00 0.00 3.91
677 695 5.375417 TTGACACCATTTACTGATGCTTG 57.625 39.130 0.00 0.00 0.00 4.01
678 696 4.650734 TGACACCATTTACTGATGCTTGA 58.349 39.130 0.00 0.00 0.00 3.02
679 697 5.255687 TGACACCATTTACTGATGCTTGAT 58.744 37.500 0.00 0.00 0.00 2.57
680 698 5.124297 TGACACCATTTACTGATGCTTGATG 59.876 40.000 0.00 0.00 0.00 3.07
681 699 5.012239 ACACCATTTACTGATGCTTGATGT 58.988 37.500 0.00 0.00 0.00 3.06
682 700 5.124457 ACACCATTTACTGATGCTTGATGTC 59.876 40.000 0.00 0.00 0.00 3.06
683 701 5.124297 CACCATTTACTGATGCTTGATGTCA 59.876 40.000 0.00 0.00 0.00 3.58
684 702 5.124457 ACCATTTACTGATGCTTGATGTCAC 59.876 40.000 0.00 0.00 0.00 3.67
685 703 5.124297 CCATTTACTGATGCTTGATGTCACA 59.876 40.000 0.00 0.00 0.00 3.58
686 704 5.611796 TTTACTGATGCTTGATGTCACAC 57.388 39.130 0.00 0.00 0.00 3.82
687 705 3.130280 ACTGATGCTTGATGTCACACA 57.870 42.857 0.00 0.00 0.00 3.72
688 706 3.682696 ACTGATGCTTGATGTCACACAT 58.317 40.909 0.00 0.00 42.43 3.21
701 719 6.829229 ATGTCACACATCTCATTGTTTGAT 57.171 33.333 0.00 0.00 38.26 2.57
702 720 6.004408 TGTCACACATCTCATTGTTTGATG 57.996 37.500 12.08 12.08 38.26 3.07
704 722 6.039605 TGTCACACATCTCATTGTTTGATGTT 59.960 34.615 14.80 8.24 45.62 2.71
705 723 6.919662 GTCACACATCTCATTGTTTGATGTTT 59.080 34.615 14.80 9.62 45.62 2.83
706 724 6.919115 TCACACATCTCATTGTTTGATGTTTG 59.081 34.615 18.50 18.50 45.62 2.93
707 725 6.698329 CACACATCTCATTGTTTGATGTTTGT 59.302 34.615 17.47 12.47 45.62 2.83
708 726 7.861872 CACACATCTCATTGTTTGATGTTTGTA 59.138 33.333 17.47 0.00 45.62 2.41
709 727 8.579006 ACACATCTCATTGTTTGATGTTTGTAT 58.421 29.630 14.80 0.00 45.62 2.29
710 728 8.856247 CACATCTCATTGTTTGATGTTTGTATG 58.144 33.333 14.80 0.00 45.62 2.39
711 729 7.543172 ACATCTCATTGTTTGATGTTTGTATGC 59.457 33.333 12.95 0.00 45.62 3.14
712 730 6.389091 TCTCATTGTTTGATGTTTGTATGCC 58.611 36.000 0.00 0.00 32.72 4.40
713 731 6.209192 TCTCATTGTTTGATGTTTGTATGCCT 59.791 34.615 0.00 0.00 32.72 4.75
714 732 7.392953 TCTCATTGTTTGATGTTTGTATGCCTA 59.607 33.333 0.00 0.00 32.72 3.93
715 733 7.890515 TCATTGTTTGATGTTTGTATGCCTAA 58.109 30.769 0.00 0.00 0.00 2.69
716 734 8.363390 TCATTGTTTGATGTTTGTATGCCTAAA 58.637 29.630 0.00 0.00 0.00 1.85
717 735 7.938563 TTGTTTGATGTTTGTATGCCTAAAC 57.061 32.000 0.00 0.00 37.32 2.01
718 736 7.043961 TGTTTGATGTTTGTATGCCTAAACA 57.956 32.000 0.00 0.00 46.87 2.83
719 737 7.492524 TGTTTGATGTTTGTATGCCTAAACAA 58.507 30.769 6.62 0.00 46.21 2.83
720 738 7.436673 TGTTTGATGTTTGTATGCCTAAACAAC 59.563 33.333 6.62 5.21 46.21 3.32
721 739 6.892658 TGATGTTTGTATGCCTAAACAACT 57.107 33.333 6.62 0.00 46.21 3.16
722 740 7.987750 TGATGTTTGTATGCCTAAACAACTA 57.012 32.000 6.62 0.00 46.21 2.24
723 741 8.397575 TGATGTTTGTATGCCTAAACAACTAA 57.602 30.769 6.62 0.00 46.21 2.24
724 742 9.019656 TGATGTTTGTATGCCTAAACAACTAAT 57.980 29.630 6.62 0.00 46.21 1.73
725 743 9.289303 GATGTTTGTATGCCTAAACAACTAATG 57.711 33.333 6.62 0.00 46.21 1.90
726 744 8.172352 TGTTTGTATGCCTAAACAACTAATGT 57.828 30.769 0.00 0.00 46.82 2.71
727 745 8.079203 TGTTTGTATGCCTAAACAACTAATGTG 58.921 33.333 0.00 0.00 42.99 3.21
728 746 6.189677 TGTATGCCTAAACAACTAATGTGC 57.810 37.500 0.00 0.00 42.99 4.57
729 747 5.943416 TGTATGCCTAAACAACTAATGTGCT 59.057 36.000 0.00 0.00 42.99 4.40
730 748 5.567138 ATGCCTAAACAACTAATGTGCTC 57.433 39.130 0.00 0.00 42.99 4.26
731 749 3.756434 TGCCTAAACAACTAATGTGCTCC 59.244 43.478 0.00 0.00 42.99 4.70
732 750 3.756434 GCCTAAACAACTAATGTGCTCCA 59.244 43.478 0.00 0.00 42.99 3.86
733 751 4.399303 GCCTAAACAACTAATGTGCTCCAT 59.601 41.667 0.00 0.00 42.99 3.41
734 752 5.105756 GCCTAAACAACTAATGTGCTCCATT 60.106 40.000 7.24 7.24 42.99 3.16
735 753 6.572314 GCCTAAACAACTAATGTGCTCCATTT 60.572 38.462 7.36 0.00 42.99 2.32
736 754 7.029563 CCTAAACAACTAATGTGCTCCATTTC 58.970 38.462 7.36 0.00 42.99 2.17
737 755 6.403866 AAACAACTAATGTGCTCCATTTCA 57.596 33.333 7.36 0.00 42.99 2.69
738 756 6.594788 AACAACTAATGTGCTCCATTTCAT 57.405 33.333 7.36 0.00 42.99 2.57
739 757 7.701539 AACAACTAATGTGCTCCATTTCATA 57.298 32.000 7.36 0.00 42.99 2.15
740 758 7.325660 ACAACTAATGTGCTCCATTTCATAG 57.674 36.000 7.36 2.81 41.01 2.23
741 759 7.112122 ACAACTAATGTGCTCCATTTCATAGA 58.888 34.615 7.36 0.00 41.01 1.98
742 760 7.066284 ACAACTAATGTGCTCCATTTCATAGAC 59.934 37.037 7.36 0.00 41.01 2.59
743 761 5.755375 ACTAATGTGCTCCATTTCATAGACG 59.245 40.000 7.36 0.00 41.01 4.18
744 762 3.885724 TGTGCTCCATTTCATAGACGA 57.114 42.857 0.00 0.00 0.00 4.20
745 763 4.406648 TGTGCTCCATTTCATAGACGAT 57.593 40.909 0.00 0.00 0.00 3.73
746 764 4.371786 TGTGCTCCATTTCATAGACGATC 58.628 43.478 0.00 0.00 0.00 3.69
747 765 4.141959 TGTGCTCCATTTCATAGACGATCA 60.142 41.667 0.00 0.00 0.00 2.92
748 766 4.811024 GTGCTCCATTTCATAGACGATCAA 59.189 41.667 0.00 0.00 0.00 2.57
749 767 4.811024 TGCTCCATTTCATAGACGATCAAC 59.189 41.667 0.00 0.00 0.00 3.18
768 786 1.698165 CGTGCTCGTCTATGTGTTGT 58.302 50.000 0.00 0.00 0.00 3.32
769 787 1.386748 CGTGCTCGTCTATGTGTTGTG 59.613 52.381 0.00 0.00 0.00 3.33
770 788 1.126846 GTGCTCGTCTATGTGTTGTGC 59.873 52.381 0.00 0.00 0.00 4.57
771 789 0.721718 GCTCGTCTATGTGTTGTGCC 59.278 55.000 0.00 0.00 0.00 5.01
772 790 1.359848 CTCGTCTATGTGTTGTGCCC 58.640 55.000 0.00 0.00 0.00 5.36
773 791 0.389296 TCGTCTATGTGTTGTGCCCG 60.389 55.000 0.00 0.00 0.00 6.13
774 792 1.794222 GTCTATGTGTTGTGCCCGC 59.206 57.895 0.00 0.00 0.00 6.13
775 793 1.376683 TCTATGTGTTGTGCCCGCC 60.377 57.895 0.00 0.00 0.00 6.13
776 794 2.360600 TATGTGTTGTGCCCGCCC 60.361 61.111 0.00 0.00 0.00 6.13
781 799 4.639171 GTTGTGCCCGCCCGTTTG 62.639 66.667 0.00 0.00 0.00 2.93
787 805 2.675075 CCCGCCCGTTTGGTTGAT 60.675 61.111 0.00 0.00 36.04 2.57
788 806 2.566010 CCGCCCGTTTGGTTGATG 59.434 61.111 0.00 0.00 36.04 3.07
789 807 1.969064 CCGCCCGTTTGGTTGATGA 60.969 57.895 0.00 0.00 36.04 2.92
790 808 1.209127 CGCCCGTTTGGTTGATGAC 59.791 57.895 0.00 0.00 36.04 3.06
791 809 1.511318 CGCCCGTTTGGTTGATGACA 61.511 55.000 0.00 0.00 36.04 3.58
792 810 0.671251 GCCCGTTTGGTTGATGACAA 59.329 50.000 0.00 0.00 36.04 3.18
793 811 1.067821 GCCCGTTTGGTTGATGACAAA 59.932 47.619 0.00 0.00 37.77 2.83
794 812 2.288763 GCCCGTTTGGTTGATGACAAAT 60.289 45.455 0.00 0.00 38.65 2.32
795 813 3.057174 GCCCGTTTGGTTGATGACAAATA 60.057 43.478 0.00 0.00 38.65 1.40
796 814 4.381505 GCCCGTTTGGTTGATGACAAATAT 60.382 41.667 0.00 0.00 38.65 1.28
797 815 5.719173 CCCGTTTGGTTGATGACAAATATT 58.281 37.500 0.00 0.00 38.65 1.28
798 816 6.626181 GCCCGTTTGGTTGATGACAAATATTA 60.626 38.462 0.00 0.00 38.65 0.98
799 817 6.972328 CCCGTTTGGTTGATGACAAATATTAG 59.028 38.462 0.00 0.00 38.65 1.73
800 818 6.972328 CCGTTTGGTTGATGACAAATATTAGG 59.028 38.462 0.00 0.00 38.65 2.69
801 819 6.972328 CGTTTGGTTGATGACAAATATTAGGG 59.028 38.462 0.00 0.00 38.65 3.53
802 820 7.148154 CGTTTGGTTGATGACAAATATTAGGGA 60.148 37.037 0.00 0.00 38.65 4.20
803 821 8.695456 GTTTGGTTGATGACAAATATTAGGGAT 58.305 33.333 0.00 0.00 38.65 3.85
804 822 9.928618 TTTGGTTGATGACAAATATTAGGGATA 57.071 29.630 0.00 0.00 37.77 2.59
805 823 9.573166 TTGGTTGATGACAAATATTAGGGATAG 57.427 33.333 0.00 0.00 37.77 2.08
806 824 8.163408 TGGTTGATGACAAATATTAGGGATAGG 58.837 37.037 0.00 0.00 37.77 2.57
807 825 8.383175 GGTTGATGACAAATATTAGGGATAGGA 58.617 37.037 0.00 0.00 37.77 2.94
808 826 9.442047 GTTGATGACAAATATTAGGGATAGGAG 57.558 37.037 0.00 0.00 37.77 3.69
809 827 8.972662 TGATGACAAATATTAGGGATAGGAGA 57.027 34.615 0.00 0.00 0.00 3.71
810 828 9.040259 TGATGACAAATATTAGGGATAGGAGAG 57.960 37.037 0.00 0.00 0.00 3.20
811 829 9.261035 GATGACAAATATTAGGGATAGGAGAGA 57.739 37.037 0.00 0.00 0.00 3.10
812 830 8.657387 TGACAAATATTAGGGATAGGAGAGAG 57.343 38.462 0.00 0.00 0.00 3.20
813 831 8.456940 TGACAAATATTAGGGATAGGAGAGAGA 58.543 37.037 0.00 0.00 0.00 3.10
814 832 9.315363 GACAAATATTAGGGATAGGAGAGAGAA 57.685 37.037 0.00 0.00 0.00 2.87
815 833 9.851267 ACAAATATTAGGGATAGGAGAGAGAAT 57.149 33.333 0.00 0.00 0.00 2.40
820 838 5.959547 AGGGATAGGAGAGAGAATTAGGT 57.040 43.478 0.00 0.00 0.00 3.08
821 839 8.535602 TTAGGGATAGGAGAGAGAATTAGGTA 57.464 38.462 0.00 0.00 0.00 3.08
822 840 7.612953 AGGGATAGGAGAGAGAATTAGGTAT 57.387 40.000 0.00 0.00 0.00 2.73
823 841 7.418378 AGGGATAGGAGAGAGAATTAGGTATG 58.582 42.308 0.00 0.00 0.00 2.39
824 842 7.242953 AGGGATAGGAGAGAGAATTAGGTATGA 59.757 40.741 0.00 0.00 0.00 2.15
825 843 7.559897 GGGATAGGAGAGAGAATTAGGTATGAG 59.440 44.444 0.00 0.00 0.00 2.90
826 844 8.333235 GGATAGGAGAGAGAATTAGGTATGAGA 58.667 40.741 0.00 0.00 0.00 3.27
827 845 9.174166 GATAGGAGAGAGAATTAGGTATGAGAC 57.826 40.741 0.00 0.00 0.00 3.36
828 846 6.001460 AGGAGAGAGAATTAGGTATGAGACG 58.999 44.000 0.00 0.00 0.00 4.18
829 847 5.998981 GGAGAGAGAATTAGGTATGAGACGA 59.001 44.000 0.00 0.00 0.00 4.20
830 848 6.148811 GGAGAGAGAATTAGGTATGAGACGAG 59.851 46.154 0.00 0.00 0.00 4.18
831 849 6.833041 AGAGAGAATTAGGTATGAGACGAGA 58.167 40.000 0.00 0.00 0.00 4.04
832 850 7.284074 AGAGAGAATTAGGTATGAGACGAGAA 58.716 38.462 0.00 0.00 0.00 2.87
833 851 7.942341 AGAGAGAATTAGGTATGAGACGAGAAT 59.058 37.037 0.00 0.00 0.00 2.40
834 852 8.472007 AGAGAATTAGGTATGAGACGAGAATT 57.528 34.615 0.00 0.00 0.00 2.17
835 853 9.575868 AGAGAATTAGGTATGAGACGAGAATTA 57.424 33.333 0.00 0.00 0.00 1.40
836 854 9.834628 GAGAATTAGGTATGAGACGAGAATTAG 57.165 37.037 0.00 0.00 0.00 1.73
837 855 8.798402 AGAATTAGGTATGAGACGAGAATTAGG 58.202 37.037 0.00 0.00 0.00 2.69
838 856 8.707796 AATTAGGTATGAGACGAGAATTAGGA 57.292 34.615 0.00 0.00 0.00 2.94
839 857 8.707796 ATTAGGTATGAGACGAGAATTAGGAA 57.292 34.615 0.00 0.00 0.00 3.36
840 858 8.529424 TTAGGTATGAGACGAGAATTAGGAAA 57.471 34.615 0.00 0.00 0.00 3.13
841 859 6.807789 AGGTATGAGACGAGAATTAGGAAAC 58.192 40.000 0.00 0.00 0.00 2.78
842 860 6.380274 AGGTATGAGACGAGAATTAGGAAACA 59.620 38.462 0.00 0.00 0.00 2.83
843 861 7.039882 GGTATGAGACGAGAATTAGGAAACAA 58.960 38.462 0.00 0.00 0.00 2.83
844 862 7.548075 GGTATGAGACGAGAATTAGGAAACAAA 59.452 37.037 0.00 0.00 0.00 2.83
845 863 9.099454 GTATGAGACGAGAATTAGGAAACAAAT 57.901 33.333 0.00 0.00 0.00 2.32
918 936 1.063492 TCCCGAACTACCCTGCTATCA 60.063 52.381 0.00 0.00 0.00 2.15
932 950 4.880120 CCTGCTATCACACACAAATCTCAT 59.120 41.667 0.00 0.00 0.00 2.90
938 956 4.067192 TCACACACAAATCTCATGACCAG 58.933 43.478 0.00 0.00 0.00 4.00
969 987 2.093288 TCCTGATCTGGCTGTGATTCAC 60.093 50.000 13.60 9.93 34.56 3.18
970 988 2.355412 CCTGATCTGGCTGTGATTCACA 60.355 50.000 18.08 18.08 42.45 3.58
976 994 2.620115 CTGGCTGTGATTCACAACTGTT 59.380 45.455 19.44 0.00 44.08 3.16
977 995 2.618241 TGGCTGTGATTCACAACTGTTC 59.382 45.455 19.44 4.50 44.08 3.18
980 998 4.202050 GGCTGTGATTCACAACTGTTCTTT 60.202 41.667 19.44 0.00 44.08 2.52
986 1004 4.789095 TTCACAACTGTTCTTTAGCGAC 57.211 40.909 0.00 0.00 0.00 5.19
987 1005 3.128349 TCACAACTGTTCTTTAGCGACC 58.872 45.455 0.00 0.00 0.00 4.79
1005 1023 2.821366 GGGTGAGTCTGCATGGCG 60.821 66.667 0.00 0.00 0.00 5.69
1007 1025 2.265739 GTGAGTCTGCATGGCGGA 59.734 61.111 0.00 0.00 42.08 5.54
1010 1028 0.955428 TGAGTCTGCATGGCGGAAAC 60.955 55.000 0.58 0.27 46.01 2.78
1011 1029 0.955428 GAGTCTGCATGGCGGAAACA 60.955 55.000 0.58 0.00 46.01 2.83
1026 1044 1.956477 GAAACAGAAGGAGCAAAGGCA 59.044 47.619 0.00 0.00 44.61 4.75
1061 1079 3.009115 TGGTAGTGGAGCTGGGGC 61.009 66.667 0.00 0.00 39.06 5.80
1086 1104 4.856801 CGTGGCCCGGATCCAAGG 62.857 72.222 13.41 12.99 35.01 3.61
1089 1107 2.359011 GGCCCGGATCCAAGGTTT 59.641 61.111 13.41 0.00 0.00 3.27
1095 1113 1.679032 CCGGATCCAAGGTTTGAGGAC 60.679 57.143 13.41 0.00 33.57 3.85
1101 1119 4.021102 TCCAAGGTTTGAGGACAGATTC 57.979 45.455 0.00 0.00 0.00 2.52
1119 1137 4.725810 AGATTCCAGGGTCTGAATCTTCAT 59.274 41.667 8.53 0.00 36.23 2.57
1128 1146 4.163078 GGTCTGAATCTTCATGGAGAGGAA 59.837 45.833 10.13 0.00 35.81 3.36
1137 1155 2.091610 TCATGGAGAGGAAGAGGACGAT 60.092 50.000 0.00 0.00 0.00 3.73
1182 1200 5.745769 CGATGAATTGATTGAAGAGACGAGA 59.254 40.000 0.00 0.00 0.00 4.04
1212 1230 7.624360 TGCTATTTTTAGGGTTCATACACAG 57.376 36.000 0.00 0.00 0.00 3.66
1213 1231 6.094881 TGCTATTTTTAGGGTTCATACACAGC 59.905 38.462 0.00 0.00 0.00 4.40
1233 1251 1.839424 GACCCTTTAGCCATGTTGCT 58.161 50.000 1.96 1.96 45.38 3.91
1254 1272 3.585862 TCTGTACAAAGCGATGAGGAAC 58.414 45.455 0.00 0.00 0.00 3.62
1263 1281 0.389817 CGATGAGGAACGCTTGGACA 60.390 55.000 0.00 0.00 0.00 4.02
1290 1308 0.539051 AGGGAGTGATCTTCAAGGCG 59.461 55.000 0.00 0.00 0.00 5.52
1302 1320 3.826157 TCTTCAAGGCGATGAAACCAAAT 59.174 39.130 9.48 0.00 38.75 2.32
1303 1321 3.848272 TCAAGGCGATGAAACCAAATC 57.152 42.857 0.00 0.00 0.00 2.17
1320 1338 3.884037 AATCTGTTCCTGGGTCAGTTT 57.116 42.857 14.87 11.56 0.00 2.66
1362 1380 2.124695 GTGATGAACGGAGGGCCC 60.125 66.667 16.46 16.46 0.00 5.80
1416 1434 3.769844 AGGAGTACGATGGTCTGACAAAT 59.230 43.478 10.38 2.54 0.00 2.32
1419 1437 4.245660 AGTACGATGGTCTGACAAATGTG 58.754 43.478 10.38 1.15 0.00 3.21
1422 1440 3.273434 CGATGGTCTGACAAATGTGGAT 58.727 45.455 10.38 0.00 0.00 3.41
1434 1452 5.072741 ACAAATGTGGATGAGTACAAGCTT 58.927 37.500 0.00 0.00 0.00 3.74
1491 1509 1.283029 CCTGAGGGGCTCATGAAGAAA 59.717 52.381 0.00 0.00 39.92 2.52
1503 1521 5.336213 GCTCATGAAGAAAAAGGAGATTGCA 60.336 40.000 0.00 0.00 0.00 4.08
1509 1527 6.547141 TGAAGAAAAAGGAGATTGCAGAGAAA 59.453 34.615 0.00 0.00 0.00 2.52
1535 1553 6.765915 AGCAAGAAAAGTTGGAATATCTCC 57.234 37.500 0.00 0.00 45.64 3.71
1539 1557 7.533426 CAAGAAAAGTTGGAATATCTCCTGTG 58.467 38.462 5.79 0.00 45.64 3.66
1580 1598 7.881232 TGAAGGTCGAATAAATCCTACAAAGTT 59.119 33.333 0.00 0.00 0.00 2.66
1581 1599 7.845066 AGGTCGAATAAATCCTACAAAGTTC 57.155 36.000 0.00 0.00 0.00 3.01
1600 1618 1.000163 TCTTGAGAGCTCGTGTTCACC 60.000 52.381 8.37 0.00 0.00 4.02
1602 1620 1.905637 TGAGAGCTCGTGTTCACCTA 58.094 50.000 8.37 0.00 0.00 3.08
1612 1630 3.745975 TCGTGTTCACCTAAAGCTTGATG 59.254 43.478 0.00 0.00 0.00 3.07
1617 1635 0.704076 ACCTAAAGCTTGATGCCCCA 59.296 50.000 0.00 0.00 44.23 4.96
1625 1643 2.203972 CTTGATGCCCCACTTGTGCG 62.204 60.000 0.00 0.00 0.00 5.34
1650 1668 2.224769 TGTGCCTTTAACCCTGAAGGAG 60.225 50.000 6.33 0.00 44.15 3.69
1651 1669 2.039879 GTGCCTTTAACCCTGAAGGAGA 59.960 50.000 6.33 0.00 44.15 3.71
1652 1670 2.305927 TGCCTTTAACCCTGAAGGAGAG 59.694 50.000 6.33 0.00 44.15 3.20
1661 1679 1.066286 CCTGAAGGAGAGCAAGAGGTG 60.066 57.143 0.00 0.00 37.39 4.00
1671 1689 1.302832 CAAGAGGTGCCCTGTGGAC 60.303 63.158 0.00 0.00 31.76 4.02
1679 1697 2.554344 GGTGCCCTGTGGACTATGAAAA 60.554 50.000 0.00 0.00 0.00 2.29
1686 1704 5.070001 CCTGTGGACTATGAAAAACTTCCA 58.930 41.667 0.00 0.00 0.00 3.53
1687 1705 5.182001 CCTGTGGACTATGAAAAACTTCCAG 59.818 44.000 0.00 0.00 33.80 3.86
1688 1706 5.935945 TGTGGACTATGAAAAACTTCCAGA 58.064 37.500 0.00 0.00 33.80 3.86
1689 1707 6.542821 TGTGGACTATGAAAAACTTCCAGAT 58.457 36.000 0.00 0.00 33.80 2.90
1690 1708 7.004086 TGTGGACTATGAAAAACTTCCAGATT 58.996 34.615 0.00 0.00 33.80 2.40
1691 1709 7.505585 TGTGGACTATGAAAAACTTCCAGATTT 59.494 33.333 0.00 0.00 33.80 2.17
1692 1710 8.023706 GTGGACTATGAAAAACTTCCAGATTTC 58.976 37.037 0.00 0.00 33.80 2.17
1693 1711 7.944554 TGGACTATGAAAAACTTCCAGATTTCT 59.055 33.333 0.00 0.00 33.90 2.52
1694 1712 8.239998 GGACTATGAAAAACTTCCAGATTTCTG 58.760 37.037 0.39 0.39 43.40 3.02
1695 1713 8.697507 ACTATGAAAAACTTCCAGATTTCTGT 57.302 30.769 6.81 0.00 42.27 3.41
1696 1714 8.571336 ACTATGAAAAACTTCCAGATTTCTGTG 58.429 33.333 6.81 0.00 42.27 3.66
1750 1768 0.180406 GTGCGGGGATGGAATACACT 59.820 55.000 0.00 0.00 0.00 3.55
1751 1769 0.180171 TGCGGGGATGGAATACACTG 59.820 55.000 0.00 0.00 0.00 3.66
1755 1773 3.206150 CGGGGATGGAATACACTGAAAG 58.794 50.000 0.00 0.00 42.29 2.62
1769 1787 5.388654 ACACTGAAAGGAGGATTGTGAATT 58.611 37.500 0.00 0.00 39.30 2.17
1785 1803 5.067273 TGTGAATTGGGTAACTGGTTACTG 58.933 41.667 18.93 0.00 43.58 2.74
1801 1819 2.751166 ACTGGTCAAGTTCGATGAGG 57.249 50.000 0.00 0.00 34.57 3.86
1804 1822 1.071542 TGGTCAAGTTCGATGAGGCAA 59.928 47.619 0.00 0.00 0.00 4.52
1828 1846 0.413832 TGGACTAGGCAGAGGAAGGT 59.586 55.000 0.00 0.00 0.00 3.50
1864 1882 4.373116 GCCGGCCAGACAGACGAA 62.373 66.667 18.11 0.00 0.00 3.85
1865 1883 2.125912 CCGGCCAGACAGACGAAG 60.126 66.667 2.24 0.00 0.00 3.79
1866 1884 2.636412 CCGGCCAGACAGACGAAGA 61.636 63.158 2.24 0.00 0.00 2.87
1867 1885 1.153939 CGGCCAGACAGACGAAGAG 60.154 63.158 2.24 0.00 0.00 2.85
1868 1886 1.216710 GGCCAGACAGACGAAGAGG 59.783 63.158 0.00 0.00 0.00 3.69
1869 1887 1.251527 GGCCAGACAGACGAAGAGGA 61.252 60.000 0.00 0.00 0.00 3.71
1870 1888 0.820871 GCCAGACAGACGAAGAGGAT 59.179 55.000 0.00 0.00 0.00 3.24
1871 1889 1.205893 GCCAGACAGACGAAGAGGATT 59.794 52.381 0.00 0.00 0.00 3.01
1872 1890 2.354203 GCCAGACAGACGAAGAGGATTT 60.354 50.000 0.00 0.00 0.00 2.17
1893 1911 1.458398 GAAGAGGCTTTGGAAGAGGC 58.542 55.000 0.00 0.00 39.76 4.70
1901 1919 0.324943 TTTGGAAGAGGCGAAGGGAG 59.675 55.000 0.00 0.00 0.00 4.30
1903 1921 2.363172 GGAAGAGGCGAAGGGAGCT 61.363 63.158 0.00 0.00 34.52 4.09
1932 1950 5.481824 GGACCCAAATCCTCAAGAAAGAAAT 59.518 40.000 0.00 0.00 35.68 2.17
1935 1953 6.153510 ACCCAAATCCTCAAGAAAGAAATAGC 59.846 38.462 0.00 0.00 0.00 2.97
1942 1960 6.070021 TCCTCAAGAAAGAAATAGCATGGAGA 60.070 38.462 0.00 0.00 0.00 3.71
1949 1967 5.643421 AGAAATAGCATGGAGATTGACCT 57.357 39.130 0.00 0.00 0.00 3.85
1950 1968 6.011122 AGAAATAGCATGGAGATTGACCTT 57.989 37.500 0.00 0.00 0.00 3.50
1954 1972 2.092538 AGCATGGAGATTGACCTTGAGG 60.093 50.000 0.00 0.00 42.17 3.86
1957 1975 1.280133 TGGAGATTGACCTTGAGGCTG 59.720 52.381 0.00 0.00 39.32 4.85
1959 1977 0.034670 AGATTGACCTTGAGGCTGCC 60.035 55.000 11.65 11.65 39.32 4.85
1967 1985 3.565961 TTGAGGCTGCCCGCAATGA 62.566 57.895 16.57 0.00 44.52 2.57
1985 2003 1.007842 TGATGGAGCACTAGTACCCCA 59.992 52.381 0.00 0.00 0.00 4.96
2010 2028 0.687354 GGAAGAGGCTGACTGGACAA 59.313 55.000 0.00 0.00 0.00 3.18
2020 2038 3.875369 GCTGACTGGACAAGATGGGAATT 60.875 47.826 0.00 0.00 0.00 2.17
2027 2045 4.951715 TGGACAAGATGGGAATTTGATCAG 59.048 41.667 0.00 0.00 0.00 2.90
2033 2051 7.069085 ACAAGATGGGAATTTGATCAGTTATGG 59.931 37.037 0.00 0.00 0.00 2.74
2035 2053 6.548622 AGATGGGAATTTGATCAGTTATGGTG 59.451 38.462 0.00 0.00 0.00 4.17
2036 2054 5.579047 TGGGAATTTGATCAGTTATGGTGT 58.421 37.500 0.00 0.00 0.00 4.16
2112 2130 3.801114 AAGGTTGAGTTGCTGGAAAAC 57.199 42.857 0.00 0.00 0.00 2.43
2147 2165 3.256879 CCAGTAGACAAGACTCAGCTCAA 59.743 47.826 0.00 0.00 0.00 3.02
2174 2192 4.455533 CCCACAAAAGATTCACGATCAGAA 59.544 41.667 0.00 0.00 37.22 3.02
2208 2226 5.704515 GGCTATGTCAGATGATGTTAATGCT 59.295 40.000 0.00 0.00 0.00 3.79
2236 2254 3.917760 CATCGGCGACTCCCCTCC 61.918 72.222 13.76 0.00 0.00 4.30
2283 2301 0.176680 CCTATGCTGGAACTGTCGCT 59.823 55.000 0.00 0.00 0.00 4.93
2472 2492 1.892474 GGGTTTGCTATTGTTCTGGCA 59.108 47.619 0.00 0.00 0.00 4.92
2515 2535 2.287009 CCGTGGAAGCACAAAGAACTTC 60.287 50.000 0.00 0.00 39.25 3.01
2547 2567 0.955919 GTTGAAACAGCGGGAGAGGG 60.956 60.000 0.00 0.00 0.00 4.30
2636 2656 9.162764 GTTACTTGAGAGGTTTATATCAGCAAA 57.837 33.333 0.00 0.00 0.00 3.68
2662 2682 2.601367 CCTTGGGTTGTGGCTGGG 60.601 66.667 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.810532 GTGGCTGTCTCGTAGGAGG 59.189 63.158 12.31 0.00 40.85 4.30
48 49 1.375908 CGACCTTGCTTGCCTGCTA 60.376 57.895 0.00 0.00 0.00 3.49
56 58 0.468226 TGACCAGAACGACCTTGCTT 59.532 50.000 0.00 0.00 0.00 3.91
61 63 1.486211 CCCTATGACCAGAACGACCT 58.514 55.000 0.00 0.00 0.00 3.85
66 68 1.344763 CCGATCCCCTATGACCAGAAC 59.655 57.143 0.00 0.00 0.00 3.01
69 71 0.178932 TCCCGATCCCCTATGACCAG 60.179 60.000 0.00 0.00 0.00 4.00
71 73 0.905357 CATCCCGATCCCCTATGACC 59.095 60.000 0.00 0.00 0.00 4.02
72 74 0.905357 CCATCCCGATCCCCTATGAC 59.095 60.000 0.00 0.00 0.00 3.06
74 76 0.252696 TCCCATCCCGATCCCCTATG 60.253 60.000 0.00 0.00 0.00 2.23
75 77 0.725133 ATCCCATCCCGATCCCCTAT 59.275 55.000 0.00 0.00 0.00 2.57
78 80 2.606587 CCATCCCATCCCGATCCCC 61.607 68.421 0.00 0.00 0.00 4.81
89 92 2.587322 GATTCACGACGCCCATCCCA 62.587 60.000 0.00 0.00 0.00 4.37
90 93 1.887707 GATTCACGACGCCCATCCC 60.888 63.158 0.00 0.00 0.00 3.85
172 181 0.325933 TCACCAGCCAGTGAGATTGG 59.674 55.000 2.39 0.00 41.78 3.16
205 214 1.155390 TTCCTCTCCCACTGACGGT 59.845 57.895 0.00 0.00 0.00 4.83
206 215 1.592223 GTTCCTCTCCCACTGACGG 59.408 63.158 0.00 0.00 0.00 4.79
208 217 0.610687 CAGGTTCCTCTCCCACTGAC 59.389 60.000 0.00 0.00 0.00 3.51
252 261 2.123033 AACCCAGGCCAAACACCC 60.123 61.111 5.01 0.00 0.00 4.61
264 273 0.893270 CGCCACCATTTCAGAACCCA 60.893 55.000 0.00 0.00 0.00 4.51
268 277 0.821301 TGCACGCCACCATTTCAGAA 60.821 50.000 0.00 0.00 0.00 3.02
287 296 0.677842 GTTATACGCATCCGGGGTCT 59.322 55.000 0.00 0.00 42.41 3.85
289 298 0.105408 GTGTTATACGCATCCGGGGT 59.895 55.000 0.00 0.00 45.69 4.95
302 311 1.890625 TAGCACCACCCGCGTGTTAT 61.891 55.000 4.92 0.00 38.41 1.89
389 407 4.218200 TGGCTCACACACAATCAAATTAGG 59.782 41.667 0.00 0.00 0.00 2.69
416 434 8.899771 CCCCACCAAAATATACTTAACACTTAG 58.100 37.037 0.00 0.00 0.00 2.18
456 474 3.364441 GCTGCACATTCGTGGCCA 61.364 61.111 0.00 0.00 43.81 5.36
485 503 3.181468 GGTATATAATCCAGGCGTAGGGC 60.181 52.174 0.00 0.00 42.51 5.19
567 585 2.187100 GCATTCCTTCCCAATCCCAAA 58.813 47.619 0.00 0.00 0.00 3.28
568 586 1.864669 GCATTCCTTCCCAATCCCAA 58.135 50.000 0.00 0.00 0.00 4.12
569 587 0.395586 CGCATTCCTTCCCAATCCCA 60.396 55.000 0.00 0.00 0.00 4.37
570 588 1.738346 GCGCATTCCTTCCCAATCCC 61.738 60.000 0.30 0.00 0.00 3.85
571 589 1.037030 TGCGCATTCCTTCCCAATCC 61.037 55.000 5.66 0.00 0.00 3.01
572 590 1.035139 ATGCGCATTCCTTCCCAATC 58.965 50.000 19.28 0.00 0.00 2.67
573 591 1.956477 GTATGCGCATTCCTTCCCAAT 59.044 47.619 30.42 1.96 0.00 3.16
592 610 4.142403 CCGCATGACCAAATCAAATACAGT 60.142 41.667 0.00 0.00 41.93 3.55
594 612 3.761218 ACCGCATGACCAAATCAAATACA 59.239 39.130 0.00 0.00 41.93 2.29
622 640 2.214376 TGGATAGCCCAACAACCTTG 57.786 50.000 0.00 0.00 43.29 3.61
634 652 1.799258 CTGCCGGGCATTTGGATAGC 61.799 60.000 24.10 0.00 38.13 2.97
635 653 1.799258 GCTGCCGGGCATTTGGATAG 61.799 60.000 24.10 9.28 38.13 2.08
637 655 3.149648 GCTGCCGGGCATTTGGAT 61.150 61.111 24.10 0.00 38.13 3.41
638 656 3.884704 AAGCTGCCGGGCATTTGGA 62.885 57.895 24.10 0.00 38.13 3.53
639 657 3.384532 AAGCTGCCGGGCATTTGG 61.385 61.111 24.10 12.07 38.13 3.28
646 664 3.925630 ATGGTGTCAAGCTGCCGGG 62.926 63.158 2.18 0.00 0.00 5.73
650 668 2.813754 TCAGTAAATGGTGTCAAGCTGC 59.186 45.455 0.00 0.00 0.00 5.25
659 677 5.124297 TGACATCAAGCATCAGTAAATGGTG 59.876 40.000 0.00 0.00 43.46 4.17
686 704 7.009815 GGCATACAAACATCAAACAATGAGATG 59.990 37.037 11.29 11.29 42.53 2.90
687 705 7.037438 GGCATACAAACATCAAACAATGAGAT 58.963 34.615 0.00 0.00 42.53 2.75
688 706 6.209192 AGGCATACAAACATCAAACAATGAGA 59.791 34.615 0.00 0.00 42.53 3.27
689 707 6.392354 AGGCATACAAACATCAAACAATGAG 58.608 36.000 0.00 0.00 42.53 2.90
690 708 6.343716 AGGCATACAAACATCAAACAATGA 57.656 33.333 0.00 0.00 43.67 2.57
691 709 8.434661 GTTTAGGCATACAAACATCAAACAATG 58.565 33.333 0.00 0.00 35.25 2.82
692 710 8.147058 TGTTTAGGCATACAAACATCAAACAAT 58.853 29.630 0.00 0.00 39.16 2.71
693 711 7.492524 TGTTTAGGCATACAAACATCAAACAA 58.507 30.769 0.00 0.00 39.16 2.83
694 712 7.043961 TGTTTAGGCATACAAACATCAAACA 57.956 32.000 0.00 0.00 39.16 2.83
695 713 7.651704 AGTTGTTTAGGCATACAAACATCAAAC 59.348 33.333 9.31 2.53 42.48 2.93
696 714 7.721402 AGTTGTTTAGGCATACAAACATCAAA 58.279 30.769 9.31 0.00 42.48 2.69
697 715 7.283625 AGTTGTTTAGGCATACAAACATCAA 57.716 32.000 9.31 0.00 42.48 2.57
698 716 6.892658 AGTTGTTTAGGCATACAAACATCA 57.107 33.333 9.31 0.00 42.48 3.07
699 717 9.289303 CATTAGTTGTTTAGGCATACAAACATC 57.711 33.333 0.71 1.10 42.48 3.06
700 718 8.802267 ACATTAGTTGTTTAGGCATACAAACAT 58.198 29.630 0.71 0.00 42.48 2.71
701 719 8.079203 CACATTAGTTGTTTAGGCATACAAACA 58.921 33.333 0.00 0.00 41.56 2.83
702 720 7.061789 GCACATTAGTTGTTTAGGCATACAAAC 59.938 37.037 0.00 0.00 36.00 2.93
703 721 7.040062 AGCACATTAGTTGTTTAGGCATACAAA 60.040 33.333 0.00 0.00 36.00 2.83
704 722 6.432783 AGCACATTAGTTGTTTAGGCATACAA 59.567 34.615 0.00 0.00 36.00 2.41
705 723 5.943416 AGCACATTAGTTGTTTAGGCATACA 59.057 36.000 0.00 0.00 36.00 2.29
706 724 6.436843 AGCACATTAGTTGTTTAGGCATAC 57.563 37.500 0.00 0.00 36.00 2.39
707 725 5.588648 GGAGCACATTAGTTGTTTAGGCATA 59.411 40.000 0.00 0.00 36.00 3.14
708 726 4.399303 GGAGCACATTAGTTGTTTAGGCAT 59.601 41.667 0.00 0.00 36.00 4.40
709 727 3.756434 GGAGCACATTAGTTGTTTAGGCA 59.244 43.478 0.00 0.00 36.00 4.75
710 728 3.756434 TGGAGCACATTAGTTGTTTAGGC 59.244 43.478 0.00 0.00 36.00 3.93
723 741 4.406648 TCGTCTATGAAATGGAGCACAT 57.593 40.909 0.00 0.00 43.07 3.21
724 742 3.885724 TCGTCTATGAAATGGAGCACA 57.114 42.857 0.00 0.00 33.10 4.57
725 743 4.371786 TGATCGTCTATGAAATGGAGCAC 58.628 43.478 0.00 0.00 33.10 4.40
726 744 4.670896 TGATCGTCTATGAAATGGAGCA 57.329 40.909 0.00 0.00 33.10 4.26
727 745 4.084849 CGTTGATCGTCTATGAAATGGAGC 60.085 45.833 0.00 0.00 33.10 4.70
728 746 5.567234 CGTTGATCGTCTATGAAATGGAG 57.433 43.478 0.00 0.00 33.10 3.86
749 767 1.386748 CACAACACATAGACGAGCACG 59.613 52.381 0.76 0.76 45.75 5.34
750 768 1.126846 GCACAACACATAGACGAGCAC 59.873 52.381 0.00 0.00 0.00 4.40
751 769 1.428448 GCACAACACATAGACGAGCA 58.572 50.000 0.00 0.00 0.00 4.26
752 770 0.721718 GGCACAACACATAGACGAGC 59.278 55.000 0.00 0.00 0.00 5.03
753 771 1.359848 GGGCACAACACATAGACGAG 58.640 55.000 0.00 0.00 0.00 4.18
754 772 0.389296 CGGGCACAACACATAGACGA 60.389 55.000 0.00 0.00 0.00 4.20
755 773 1.966493 GCGGGCACAACACATAGACG 61.966 60.000 0.00 0.00 0.00 4.18
756 774 1.644786 GGCGGGCACAACACATAGAC 61.645 60.000 0.00 0.00 0.00 2.59
757 775 1.376683 GGCGGGCACAACACATAGA 60.377 57.895 0.00 0.00 0.00 1.98
758 776 2.406616 GGGCGGGCACAACACATAG 61.407 63.158 3.27 0.00 0.00 2.23
759 777 2.360600 GGGCGGGCACAACACATA 60.361 61.111 3.27 0.00 0.00 2.29
764 782 4.639171 CAAACGGGCGGGCACAAC 62.639 66.667 3.27 0.00 0.00 3.32
770 788 2.675075 ATCAACCAAACGGGCGGG 60.675 61.111 0.00 0.00 42.05 6.13
771 789 1.969064 TCATCAACCAAACGGGCGG 60.969 57.895 0.00 0.00 42.05 6.13
772 790 1.209127 GTCATCAACCAAACGGGCG 59.791 57.895 0.00 0.00 42.05 6.13
773 791 0.671251 TTGTCATCAACCAAACGGGC 59.329 50.000 0.00 0.00 42.05 6.13
774 792 3.658757 ATTTGTCATCAACCAAACGGG 57.341 42.857 0.00 0.00 44.81 5.28
775 793 6.972328 CCTAATATTTGTCATCAACCAAACGG 59.028 38.462 0.00 0.00 33.73 4.44
776 794 6.972328 CCCTAATATTTGTCATCAACCAAACG 59.028 38.462 0.00 0.00 33.73 3.60
777 795 8.062065 TCCCTAATATTTGTCATCAACCAAAC 57.938 34.615 0.00 0.00 33.73 2.93
778 796 8.837099 ATCCCTAATATTTGTCATCAACCAAA 57.163 30.769 0.00 0.00 35.25 3.28
779 797 9.573166 CTATCCCTAATATTTGTCATCAACCAA 57.427 33.333 0.00 0.00 32.93 3.67
780 798 8.163408 CCTATCCCTAATATTTGTCATCAACCA 58.837 37.037 0.00 0.00 32.93 3.67
781 799 8.383175 TCCTATCCCTAATATTTGTCATCAACC 58.617 37.037 0.00 0.00 32.93 3.77
782 800 9.442047 CTCCTATCCCTAATATTTGTCATCAAC 57.558 37.037 0.00 0.00 32.93 3.18
783 801 9.392506 TCTCCTATCCCTAATATTTGTCATCAA 57.607 33.333 0.00 0.00 0.00 2.57
784 802 8.972662 TCTCCTATCCCTAATATTTGTCATCA 57.027 34.615 0.00 0.00 0.00 3.07
785 803 9.261035 TCTCTCCTATCCCTAATATTTGTCATC 57.739 37.037 0.00 0.00 0.00 2.92
786 804 9.265862 CTCTCTCCTATCCCTAATATTTGTCAT 57.734 37.037 0.00 0.00 0.00 3.06
787 805 8.456940 TCTCTCTCCTATCCCTAATATTTGTCA 58.543 37.037 0.00 0.00 0.00 3.58
788 806 8.887264 TCTCTCTCCTATCCCTAATATTTGTC 57.113 38.462 0.00 0.00 0.00 3.18
789 807 9.851267 ATTCTCTCTCCTATCCCTAATATTTGT 57.149 33.333 0.00 0.00 0.00 2.83
794 812 9.141489 ACCTAATTCTCTCTCCTATCCCTAATA 57.859 37.037 0.00 0.00 0.00 0.98
795 813 8.018389 ACCTAATTCTCTCTCCTATCCCTAAT 57.982 38.462 0.00 0.00 0.00 1.73
796 814 7.423443 ACCTAATTCTCTCTCCTATCCCTAA 57.577 40.000 0.00 0.00 0.00 2.69
797 815 8.561769 CATACCTAATTCTCTCTCCTATCCCTA 58.438 40.741 0.00 0.00 0.00 3.53
798 816 5.959547 ACCTAATTCTCTCTCCTATCCCT 57.040 43.478 0.00 0.00 0.00 4.20
799 817 7.415086 TCATACCTAATTCTCTCTCCTATCCC 58.585 42.308 0.00 0.00 0.00 3.85
800 818 8.333235 TCTCATACCTAATTCTCTCTCCTATCC 58.667 40.741 0.00 0.00 0.00 2.59
801 819 9.174166 GTCTCATACCTAATTCTCTCTCCTATC 57.826 40.741 0.00 0.00 0.00 2.08
802 820 7.827236 CGTCTCATACCTAATTCTCTCTCCTAT 59.173 40.741 0.00 0.00 0.00 2.57
803 821 7.016366 TCGTCTCATACCTAATTCTCTCTCCTA 59.984 40.741 0.00 0.00 0.00 2.94
804 822 6.001460 CGTCTCATACCTAATTCTCTCTCCT 58.999 44.000 0.00 0.00 0.00 3.69
805 823 5.998981 TCGTCTCATACCTAATTCTCTCTCC 59.001 44.000 0.00 0.00 0.00 3.71
806 824 6.932400 TCTCGTCTCATACCTAATTCTCTCTC 59.068 42.308 0.00 0.00 0.00 3.20
807 825 6.833041 TCTCGTCTCATACCTAATTCTCTCT 58.167 40.000 0.00 0.00 0.00 3.10
808 826 7.499321 TTCTCGTCTCATACCTAATTCTCTC 57.501 40.000 0.00 0.00 0.00 3.20
809 827 8.472007 AATTCTCGTCTCATACCTAATTCTCT 57.528 34.615 0.00 0.00 0.00 3.10
810 828 9.834628 CTAATTCTCGTCTCATACCTAATTCTC 57.165 37.037 0.00 0.00 0.00 2.87
811 829 8.798402 CCTAATTCTCGTCTCATACCTAATTCT 58.202 37.037 0.00 0.00 0.00 2.40
812 830 8.794553 TCCTAATTCTCGTCTCATACCTAATTC 58.205 37.037 0.00 0.00 0.00 2.17
813 831 8.707796 TCCTAATTCTCGTCTCATACCTAATT 57.292 34.615 0.00 0.00 0.00 1.40
814 832 8.707796 TTCCTAATTCTCGTCTCATACCTAAT 57.292 34.615 0.00 0.00 0.00 1.73
815 833 8.411683 GTTTCCTAATTCTCGTCTCATACCTAA 58.588 37.037 0.00 0.00 0.00 2.69
816 834 7.558807 TGTTTCCTAATTCTCGTCTCATACCTA 59.441 37.037 0.00 0.00 0.00 3.08
817 835 6.380274 TGTTTCCTAATTCTCGTCTCATACCT 59.620 38.462 0.00 0.00 0.00 3.08
818 836 6.570692 TGTTTCCTAATTCTCGTCTCATACC 58.429 40.000 0.00 0.00 0.00 2.73
819 837 8.475331 TTTGTTTCCTAATTCTCGTCTCATAC 57.525 34.615 0.00 0.00 0.00 2.39
820 838 9.314321 GATTTGTTTCCTAATTCTCGTCTCATA 57.686 33.333 0.00 0.00 0.00 2.15
821 839 7.281100 GGATTTGTTTCCTAATTCTCGTCTCAT 59.719 37.037 0.00 0.00 32.68 2.90
822 840 6.594159 GGATTTGTTTCCTAATTCTCGTCTCA 59.406 38.462 0.00 0.00 32.68 3.27
823 841 6.037281 GGGATTTGTTTCCTAATTCTCGTCTC 59.963 42.308 0.00 0.00 35.97 3.36
824 842 5.880887 GGGATTTGTTTCCTAATTCTCGTCT 59.119 40.000 0.00 0.00 35.97 4.18
825 843 5.066117 GGGGATTTGTTTCCTAATTCTCGTC 59.934 44.000 0.00 0.00 35.97 4.20
826 844 4.948004 GGGGATTTGTTTCCTAATTCTCGT 59.052 41.667 0.00 0.00 35.97 4.18
827 845 5.193679 AGGGGATTTGTTTCCTAATTCTCG 58.806 41.667 0.00 0.00 35.97 4.04
828 846 6.773200 CCTAGGGGATTTGTTTCCTAATTCTC 59.227 42.308 0.00 0.00 35.97 2.87
829 847 6.673583 CCTAGGGGATTTGTTTCCTAATTCT 58.326 40.000 0.00 0.00 35.97 2.40
830 848 5.302059 GCCTAGGGGATTTGTTTCCTAATTC 59.698 44.000 11.72 0.00 35.97 2.17
831 849 5.208890 GCCTAGGGGATTTGTTTCCTAATT 58.791 41.667 11.72 0.00 35.97 1.40
832 850 4.231890 TGCCTAGGGGATTTGTTTCCTAAT 59.768 41.667 11.72 0.00 35.97 1.73
833 851 3.594232 TGCCTAGGGGATTTGTTTCCTAA 59.406 43.478 11.72 0.00 35.97 2.69
834 852 3.194620 TGCCTAGGGGATTTGTTTCCTA 58.805 45.455 11.72 0.00 35.97 2.94
835 853 2.000048 TGCCTAGGGGATTTGTTTCCT 59.000 47.619 11.72 0.00 35.97 3.36
836 854 2.379005 CTGCCTAGGGGATTTGTTTCC 58.621 52.381 11.72 0.00 34.83 3.13
837 855 1.751351 GCTGCCTAGGGGATTTGTTTC 59.249 52.381 11.72 0.00 33.58 2.78
838 856 1.359130 AGCTGCCTAGGGGATTTGTTT 59.641 47.619 11.72 0.00 33.58 2.83
839 857 1.002857 AGCTGCCTAGGGGATTTGTT 58.997 50.000 11.72 0.00 33.58 2.83
840 858 1.771255 CTAGCTGCCTAGGGGATTTGT 59.229 52.381 11.72 0.00 37.90 2.83
841 859 2.557920 CTAGCTGCCTAGGGGATTTG 57.442 55.000 11.72 0.00 37.90 2.32
910 928 5.583457 TCATGAGATTTGTGTGTGATAGCAG 59.417 40.000 0.00 0.00 0.00 4.24
918 936 4.356405 TCTGGTCATGAGATTTGTGTGT 57.644 40.909 0.00 0.00 0.00 3.72
932 950 2.121948 CAGGAGATCCCAATCTGGTCA 58.878 52.381 0.00 0.00 42.46 4.02
969 987 1.459592 CCGGTCGCTAAAGAACAGTTG 59.540 52.381 0.00 0.00 0.00 3.16
970 988 1.607251 CCCGGTCGCTAAAGAACAGTT 60.607 52.381 0.00 0.00 0.00 3.16
976 994 0.896940 ACTCACCCGGTCGCTAAAGA 60.897 55.000 0.00 0.00 0.00 2.52
977 995 0.458025 GACTCACCCGGTCGCTAAAG 60.458 60.000 0.00 0.00 0.00 1.85
980 998 2.044555 CAGACTCACCCGGTCGCTA 61.045 63.158 0.00 0.00 38.58 4.26
986 1004 2.124983 CCATGCAGACTCACCCGG 60.125 66.667 0.00 0.00 0.00 5.73
987 1005 2.821366 GCCATGCAGACTCACCCG 60.821 66.667 0.00 0.00 0.00 5.28
1005 1023 1.270826 GCCTTTGCTCCTTCTGTTTCC 59.729 52.381 0.00 0.00 33.53 3.13
1007 1025 1.683385 GTGCCTTTGCTCCTTCTGTTT 59.317 47.619 0.00 0.00 38.71 2.83
1010 1028 1.580845 CGGTGCCTTTGCTCCTTCTG 61.581 60.000 4.39 0.00 46.64 3.02
1011 1029 1.302832 CGGTGCCTTTGCTCCTTCT 60.303 57.895 4.39 0.00 46.64 2.85
1095 1113 4.080695 TGAAGATTCAGACCCTGGAATCTG 60.081 45.833 15.29 17.26 43.16 2.90
1101 1119 2.507058 TCCATGAAGATTCAGACCCTGG 59.493 50.000 0.00 3.99 41.08 4.45
1119 1137 2.497675 CAAATCGTCCTCTTCCTCTCCA 59.502 50.000 0.00 0.00 0.00 3.86
1128 1146 4.256920 CTGACAAATCCAAATCGTCCTCT 58.743 43.478 0.00 0.00 0.00 3.69
1137 1155 4.002982 CGATCTCACCTGACAAATCCAAA 58.997 43.478 0.00 0.00 0.00 3.28
1182 1200 7.919385 ATGAACCCTAAAAATAGCAATCCAT 57.081 32.000 0.00 0.00 0.00 3.41
1212 1230 0.451783 CAACATGGCTAAAGGGTCGC 59.548 55.000 0.00 0.00 0.00 5.19
1213 1231 0.451783 GCAACATGGCTAAAGGGTCG 59.548 55.000 0.00 0.00 0.00 4.79
1233 1251 3.585862 GTTCCTCATCGCTTTGTACAGA 58.414 45.455 0.00 0.00 0.00 3.41
1254 1272 2.591429 TGTGCTGGTGTCCAAGCG 60.591 61.111 0.00 0.00 32.91 4.68
1263 1281 0.546267 AGATCACTCCCTGTGCTGGT 60.546 55.000 0.00 0.00 45.81 4.00
1290 1308 4.082026 CCCAGGAACAGATTTGGTTTCATC 60.082 45.833 0.00 0.00 0.00 2.92
1302 1320 3.650942 ACATAAACTGACCCAGGAACAGA 59.349 43.478 16.34 0.00 35.51 3.41
1303 1321 3.753272 CACATAAACTGACCCAGGAACAG 59.247 47.826 10.15 10.15 35.51 3.16
1320 1338 3.342377 TTCCAATCGCCAAGACACATA 57.658 42.857 0.00 0.00 0.00 2.29
1362 1380 1.202031 GCTGCGTTCCGAAATAACCAG 60.202 52.381 0.00 0.00 32.70 4.00
1416 1434 4.507710 GATCAAGCTTGTACTCATCCACA 58.492 43.478 25.19 2.43 0.00 4.17
1419 1437 2.541762 GCGATCAAGCTTGTACTCATCC 59.458 50.000 25.19 10.79 0.00 3.51
1422 1440 2.741759 TGCGATCAAGCTTGTACTCA 57.258 45.000 25.19 17.35 38.13 3.41
1482 1500 6.150641 TCTCTGCAATCTCCTTTTTCTTCATG 59.849 38.462 0.00 0.00 0.00 3.07
1491 1509 5.948162 TGCTATTTTCTCTGCAATCTCCTTT 59.052 36.000 0.00 0.00 32.12 3.11
1503 1521 7.823745 TCCAACTTTTCTTGCTATTTTCTCT 57.176 32.000 0.00 0.00 0.00 3.10
1509 1527 8.907885 GGAGATATTCCAACTTTTCTTGCTATT 58.092 33.333 0.00 0.00 46.01 1.73
1531 1549 2.972021 TGACAATGACCTTCACAGGAGA 59.028 45.455 0.00 0.00 44.19 3.71
1535 1553 5.335426 CCTTCATTGACAATGACCTTCACAG 60.335 44.000 26.72 19.25 46.90 3.66
1539 1557 4.142816 CGACCTTCATTGACAATGACCTTC 60.143 45.833 26.72 20.33 46.90 3.46
1566 1584 6.538263 AGCTCTCAAGAACTTTGTAGGATTT 58.462 36.000 0.00 0.00 0.00 2.17
1580 1598 1.000163 GGTGAACACGAGCTCTCAAGA 60.000 52.381 12.85 0.00 0.00 3.02
1581 1599 1.000283 AGGTGAACACGAGCTCTCAAG 60.000 52.381 12.85 0.00 0.00 3.02
1600 1618 2.134789 AGTGGGGCATCAAGCTTTAG 57.865 50.000 0.00 0.00 44.79 1.85
1602 1620 0.971386 CAAGTGGGGCATCAAGCTTT 59.029 50.000 0.00 0.00 44.79 3.51
1612 1630 1.591327 CAAAACGCACAAGTGGGGC 60.591 57.895 19.38 2.93 46.30 5.80
1617 1635 0.530288 AAGGCACAAAACGCACAAGT 59.470 45.000 0.00 0.00 0.00 3.16
1625 1643 4.368315 CTTCAGGGTTAAAGGCACAAAAC 58.632 43.478 0.00 0.00 0.00 2.43
1661 1679 3.421844 AGTTTTTCATAGTCCACAGGGC 58.578 45.455 0.00 0.00 0.00 5.19
1665 1683 5.935945 TCTGGAAGTTTTTCATAGTCCACA 58.064 37.500 0.00 0.00 34.90 4.17
1686 1704 5.704515 CAGACCACAGAAATCACAGAAATCT 59.295 40.000 0.00 0.00 0.00 2.40
1687 1705 5.702670 TCAGACCACAGAAATCACAGAAATC 59.297 40.000 0.00 0.00 0.00 2.17
1688 1706 5.624159 TCAGACCACAGAAATCACAGAAAT 58.376 37.500 0.00 0.00 0.00 2.17
1689 1707 5.034852 TCAGACCACAGAAATCACAGAAA 57.965 39.130 0.00 0.00 0.00 2.52
1690 1708 4.687901 TCAGACCACAGAAATCACAGAA 57.312 40.909 0.00 0.00 0.00 3.02
1691 1709 4.564199 CCATCAGACCACAGAAATCACAGA 60.564 45.833 0.00 0.00 0.00 3.41
1692 1710 3.688185 CCATCAGACCACAGAAATCACAG 59.312 47.826 0.00 0.00 0.00 3.66
1693 1711 3.559811 CCCATCAGACCACAGAAATCACA 60.560 47.826 0.00 0.00 0.00 3.58
1694 1712 3.012518 CCCATCAGACCACAGAAATCAC 58.987 50.000 0.00 0.00 0.00 3.06
1695 1713 2.025981 CCCCATCAGACCACAGAAATCA 60.026 50.000 0.00 0.00 0.00 2.57
1696 1714 2.648059 CCCCATCAGACCACAGAAATC 58.352 52.381 0.00 0.00 0.00 2.17
1750 1768 4.088634 CCCAATTCACAATCCTCCTTTCA 58.911 43.478 0.00 0.00 0.00 2.69
1751 1769 4.089361 ACCCAATTCACAATCCTCCTTTC 58.911 43.478 0.00 0.00 0.00 2.62
1755 1773 4.399303 CAGTTACCCAATTCACAATCCTCC 59.601 45.833 0.00 0.00 0.00 4.30
1769 1787 2.692024 TGACCAGTAACCAGTTACCCA 58.308 47.619 15.34 7.51 44.79 4.51
1785 1803 1.464997 GTTGCCTCATCGAACTTGACC 59.535 52.381 0.00 0.00 0.00 4.02
1801 1819 3.462021 CTCTGCCTAGTCCATTAGTTGC 58.538 50.000 0.00 0.00 0.00 4.17
1804 1822 3.689872 TCCTCTGCCTAGTCCATTAGT 57.310 47.619 0.00 0.00 0.00 2.24
1806 1824 3.309296 CCTTCCTCTGCCTAGTCCATTA 58.691 50.000 0.00 0.00 0.00 1.90
1807 1825 2.122768 CCTTCCTCTGCCTAGTCCATT 58.877 52.381 0.00 0.00 0.00 3.16
1808 1826 1.008938 ACCTTCCTCTGCCTAGTCCAT 59.991 52.381 0.00 0.00 0.00 3.41
1809 1827 0.413832 ACCTTCCTCTGCCTAGTCCA 59.586 55.000 0.00 0.00 0.00 4.02
1810 1828 0.827368 CACCTTCCTCTGCCTAGTCC 59.173 60.000 0.00 0.00 0.00 3.85
1811 1829 1.478916 GTCACCTTCCTCTGCCTAGTC 59.521 57.143 0.00 0.00 0.00 2.59
1812 1830 1.203187 TGTCACCTTCCTCTGCCTAGT 60.203 52.381 0.00 0.00 0.00 2.57
1813 1831 1.480137 CTGTCACCTTCCTCTGCCTAG 59.520 57.143 0.00 0.00 0.00 3.02
1814 1832 1.203187 ACTGTCACCTTCCTCTGCCTA 60.203 52.381 0.00 0.00 0.00 3.93
1852 1870 3.257393 CAAATCCTCTTCGTCTGTCTGG 58.743 50.000 0.00 0.00 0.00 3.86
1856 1874 3.578716 TCTTCCAAATCCTCTTCGTCTGT 59.421 43.478 0.00 0.00 0.00 3.41
1861 1879 2.093235 AGCCTCTTCCAAATCCTCTTCG 60.093 50.000 0.00 0.00 0.00 3.79
1862 1880 3.643199 AGCCTCTTCCAAATCCTCTTC 57.357 47.619 0.00 0.00 0.00 2.87
1863 1881 4.085009 CAAAGCCTCTTCCAAATCCTCTT 58.915 43.478 0.00 0.00 0.00 2.85
1864 1882 3.563043 CCAAAGCCTCTTCCAAATCCTCT 60.563 47.826 0.00 0.00 0.00 3.69
1865 1883 2.757314 CCAAAGCCTCTTCCAAATCCTC 59.243 50.000 0.00 0.00 0.00 3.71
1866 1884 2.379907 TCCAAAGCCTCTTCCAAATCCT 59.620 45.455 0.00 0.00 0.00 3.24
1867 1885 2.807676 TCCAAAGCCTCTTCCAAATCC 58.192 47.619 0.00 0.00 0.00 3.01
1868 1886 4.082125 TCTTCCAAAGCCTCTTCCAAATC 58.918 43.478 0.00 0.00 0.00 2.17
1869 1887 4.085009 CTCTTCCAAAGCCTCTTCCAAAT 58.915 43.478 0.00 0.00 0.00 2.32
1870 1888 3.490348 CTCTTCCAAAGCCTCTTCCAAA 58.510 45.455 0.00 0.00 0.00 3.28
1871 1889 2.224867 CCTCTTCCAAAGCCTCTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
1872 1890 1.352352 CCTCTTCCAAAGCCTCTTCCA 59.648 52.381 0.00 0.00 0.00 3.53
1893 1911 3.009115 TCCCCCAAGCTCCCTTCG 61.009 66.667 0.00 0.00 0.00 3.79
1913 1931 7.705325 CCATGCTATTTCTTTCTTGAGGATTTG 59.295 37.037 0.00 0.00 0.00 2.32
1917 1935 6.065976 TCCATGCTATTTCTTTCTTGAGGA 57.934 37.500 0.00 0.00 0.00 3.71
1919 1937 7.804843 ATCTCCATGCTATTTCTTTCTTGAG 57.195 36.000 0.00 0.00 0.00 3.02
1932 1950 3.135348 CCTCAAGGTCAATCTCCATGCTA 59.865 47.826 0.00 0.00 0.00 3.49
1935 1953 2.092538 AGCCTCAAGGTCAATCTCCATG 60.093 50.000 0.00 0.00 37.57 3.66
1942 1960 1.000396 GGGCAGCCTCAAGGTCAAT 60.000 57.895 12.43 0.00 37.57 2.57
1957 1975 2.829914 TGCTCCATCATTGCGGGC 60.830 61.111 0.00 0.00 0.00 6.13
1959 1977 1.224075 CTAGTGCTCCATCATTGCGG 58.776 55.000 0.00 0.00 0.00 5.69
1962 1980 3.495100 GGGGTACTAGTGCTCCATCATTG 60.495 52.174 23.75 0.00 35.73 2.82
1967 1985 2.119495 CTTGGGGTACTAGTGCTCCAT 58.881 52.381 30.36 0.00 45.30 3.41
2003 2021 4.951715 TGATCAAATTCCCATCTTGTCCAG 59.048 41.667 0.00 0.00 0.00 3.86
2010 2028 6.548622 CACCATAACTGATCAAATTCCCATCT 59.451 38.462 0.00 0.00 0.00 2.90
2020 2038 5.755409 ACACCTACACCATAACTGATCAA 57.245 39.130 0.00 0.00 0.00 2.57
2027 2045 4.939439 CCTGGTTAACACCTACACCATAAC 59.061 45.833 8.10 0.00 44.61 1.89
2033 2051 2.774687 CCACCTGGTTAACACCTACAC 58.225 52.381 8.10 0.00 44.61 2.90
2035 2053 1.072648 TGCCACCTGGTTAACACCTAC 59.927 52.381 8.10 0.00 44.61 3.18
2036 2054 1.349688 CTGCCACCTGGTTAACACCTA 59.650 52.381 8.10 0.00 44.61 3.08
2112 2130 7.436673 GTCTTGTCTACTGGTTCATTAGCTATG 59.563 40.741 0.00 0.00 35.45 2.23
2147 2165 1.953686 CGTGAATCTTTTGTGGGGTGT 59.046 47.619 0.00 0.00 0.00 4.16
2174 2192 5.663106 TCATCTGACATAGCCTTAAACCTCT 59.337 40.000 0.00 0.00 0.00 3.69
2208 2226 1.135199 GTCGCCGATGTACTTGAGGAA 60.135 52.381 0.00 0.00 0.00 3.36
2236 2254 2.046892 CTCCTGGCGAACACCCTG 60.047 66.667 0.00 0.00 0.00 4.45
2283 2301 2.497293 CGCGGTACTGGCCATACA 59.503 61.111 5.51 0.00 0.00 2.29
2448 2468 3.099141 CAGAACAATAGCAAACCCCCAT 58.901 45.455 0.00 0.00 0.00 4.00
2472 2492 3.242011 ACTTGCAGGACAATGGGATTTT 58.758 40.909 1.40 0.00 37.72 1.82
2515 2535 4.221342 CTGTTTCAACCGACACATCAATG 58.779 43.478 0.00 0.00 31.60 2.82
2547 2567 8.579863 CATAAAATCCAGTAAATCTCCATTCCC 58.420 37.037 0.00 0.00 0.00 3.97
2636 2656 1.350310 ACAACCCAAGGGAGACGGTT 61.350 55.000 13.15 0.00 39.18 4.44
2662 2682 5.176590 GCGAGTACAAGATCTCATGAAATCC 59.823 44.000 5.37 0.00 0.00 3.01
2715 2736 6.417930 CACTAAAATTCTGCATCATGCTCATG 59.582 38.462 11.84 3.55 45.31 3.07



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.