Multiple sequence alignment - TraesCS2D01G483600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G483600 chr2D 100.000 4824 0 0 1 4824 585342985 585347808 0.000000e+00 8909.0
1 TraesCS2D01G483600 chr2D 89.441 1430 138 8 2181 3599 585209883 585211310 0.000000e+00 1792.0
2 TraesCS2D01G483600 chr2D 81.532 1332 227 14 2178 3501 585375726 585377046 0.000000e+00 1079.0
3 TraesCS2D01G483600 chr2D 88.328 891 59 16 642 1511 585208662 585209528 0.000000e+00 1027.0
4 TraesCS2D01G483600 chr2D 76.028 1264 252 27 2216 3437 585107269 585108523 4.130000e-170 608.0
5 TraesCS2D01G483600 chr2D 90.338 414 36 1 1046 1455 585382654 585383067 1.530000e-149 540.0
6 TraesCS2D01G483600 chr2D 89.234 418 32 11 1077 1484 585368521 585368935 1.200000e-140 510.0
7 TraesCS2D01G483600 chr2D 83.007 153 15 6 1948 2099 585209707 585209849 1.410000e-25 128.0
8 TraesCS2D01G483600 chr2A 94.005 2302 120 10 2105 4394 719403677 719405972 0.000000e+00 3470.0
9 TraesCS2D01G483600 chr2A 91.048 1374 64 27 262 1620 719401702 719403031 0.000000e+00 1801.0
10 TraesCS2D01G483600 chr2A 76.190 1260 249 27 2216 3437 719305336 719306582 6.860000e-173 617.0
11 TraesCS2D01G483600 chr2A 88.518 479 44 8 1013 1484 719467851 719468325 1.950000e-158 569.0
12 TraesCS2D01G483600 chr2A 90.909 407 36 1 4418 4824 719406333 719406738 3.280000e-151 545.0
13 TraesCS2D01G483600 chr2A 89.928 417 35 4 1046 1455 719473833 719474249 9.190000e-147 531.0
14 TraesCS2D01G483600 chr2A 81.641 512 44 27 1623 2102 719403061 719403554 3.520000e-101 379.0
15 TraesCS2D01G483600 chr2B 94.313 1565 78 4 2105 3660 706119709 706121271 0.000000e+00 2386.0
16 TraesCS2D01G483600 chr2B 94.249 1565 79 4 2105 3660 706116578 706118140 0.000000e+00 2381.0
17 TraesCS2D01G483600 chr2B 83.987 1555 115 51 642 2102 706114943 706116457 0.000000e+00 1369.0
18 TraesCS2D01G483600 chr2B 81.593 1331 231 9 2178 3501 706268754 706270077 0.000000e+00 1088.0
19 TraesCS2D01G483600 chr2B 76.032 1260 257 19 2216 3437 705727234 705728486 3.190000e-171 612.0
20 TraesCS2D01G483600 chr2B 88.703 478 46 6 1013 1484 706267772 706268247 1.160000e-160 577.0
21 TraesCS2D01G483600 chr2B 89.100 422 34 4 1046 1455 706289927 706290348 9.260000e-142 514.0
22 TraesCS2D01G483600 chr2B 84.848 231 18 8 1872 2102 706119375 706119588 2.920000e-52 217.0
23 TraesCS2D01G483600 chr2B 78.491 265 55 2 1 264 186399752 186400015 6.420000e-39 172.0
24 TraesCS2D01G483600 chr2B 84.043 94 6 3 261 345 706114598 706114691 1.110000e-11 82.4
25 TraesCS2D01G483600 chr3B 78.355 231 48 2 1 230 662777342 662777571 1.080000e-31 148.0
26 TraesCS2D01G483600 chrUn 78.680 197 39 2 66 262 77133707 77133900 1.410000e-25 128.0
27 TraesCS2D01G483600 chr1D 84.337 83 12 1 1684 1766 178838300 178838381 4.000000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G483600 chr2D 585342985 585347808 4823 False 8909.000000 8909 100.000000 1 4824 1 chr2D.!!$F2 4823
1 TraesCS2D01G483600 chr2D 585375726 585377046 1320 False 1079.000000 1079 81.532000 2178 3501 1 chr2D.!!$F4 1323
2 TraesCS2D01G483600 chr2D 585208662 585211310 2648 False 982.333333 1792 86.925333 642 3599 3 chr2D.!!$F6 2957
3 TraesCS2D01G483600 chr2D 585107269 585108523 1254 False 608.000000 608 76.028000 2216 3437 1 chr2D.!!$F1 1221
4 TraesCS2D01G483600 chr2A 719401702 719406738 5036 False 1548.750000 3470 89.400750 262 4824 4 chr2A.!!$F4 4562
5 TraesCS2D01G483600 chr2A 719305336 719306582 1246 False 617.000000 617 76.190000 2216 3437 1 chr2A.!!$F1 1221
6 TraesCS2D01G483600 chr2B 706114598 706121271 6673 False 1287.080000 2386 88.288000 261 3660 5 chr2B.!!$F4 3399
7 TraesCS2D01G483600 chr2B 706267772 706270077 2305 False 832.500000 1088 85.148000 1013 3501 2 chr2B.!!$F5 2488
8 TraesCS2D01G483600 chr2B 705727234 705728486 1252 False 612.000000 612 76.032000 2216 3437 1 chr2B.!!$F2 1221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
996 1177 0.038251 TAGCACGTGGTCAAGCTCAG 60.038 55.000 25.54 0.00 38.47 3.35 F
1561 1816 0.036671 TCACATGCTGTCTGCCTCAG 60.037 55.000 0.00 0.00 42.00 3.35 F
2468 3089 1.938125 CGTTGTTGGCATGTCGACA 59.062 52.632 22.48 22.48 0.00 4.35 F
3435 4088 1.271379 ACCATGTTCGGGTTGGAGAAG 60.271 52.381 0.00 0.00 34.10 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2744 3374 2.014335 TTGACGACGACTCCTCGATA 57.986 50.0 0.00 0.0 43.06 2.92 R
3435 4088 2.413310 TTACAAATTCTCCCTCGCCC 57.587 50.0 0.00 0.0 0.00 6.13 R
3673 7465 0.040425 GTGCGGGCACACAAAAGTAG 60.040 55.0 18.27 0.0 45.53 2.57 R
4242 8034 0.170561 CGTCCCAACACTCTCGTAGG 59.829 60.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.207891 TCTCTCCACCACAAAGCTAATC 57.792 45.455 0.00 0.00 0.00 1.75
22 23 3.055094 TCTCTCCACCACAAAGCTAATCC 60.055 47.826 0.00 0.00 0.00 3.01
23 24 2.912956 TCTCCACCACAAAGCTAATCCT 59.087 45.455 0.00 0.00 0.00 3.24
24 25 3.055094 TCTCCACCACAAAGCTAATCCTC 60.055 47.826 0.00 0.00 0.00 3.71
25 26 2.026262 TCCACCACAAAGCTAATCCTCC 60.026 50.000 0.00 0.00 0.00 4.30
26 27 2.290896 CCACCACAAAGCTAATCCTCCA 60.291 50.000 0.00 0.00 0.00 3.86
27 28 2.749621 CACCACAAAGCTAATCCTCCAC 59.250 50.000 0.00 0.00 0.00 4.02
28 29 2.644798 ACCACAAAGCTAATCCTCCACT 59.355 45.455 0.00 0.00 0.00 4.00
29 30 3.074538 ACCACAAAGCTAATCCTCCACTT 59.925 43.478 0.00 0.00 0.00 3.16
30 31 3.691609 CCACAAAGCTAATCCTCCACTTC 59.308 47.826 0.00 0.00 0.00 3.01
31 32 4.566488 CCACAAAGCTAATCCTCCACTTCT 60.566 45.833 0.00 0.00 0.00 2.85
32 33 5.338381 CCACAAAGCTAATCCTCCACTTCTA 60.338 44.000 0.00 0.00 0.00 2.10
33 34 5.582665 CACAAAGCTAATCCTCCACTTCTAC 59.417 44.000 0.00 0.00 0.00 2.59
34 35 5.119694 CAAAGCTAATCCTCCACTTCTACC 58.880 45.833 0.00 0.00 0.00 3.18
35 36 3.310193 AGCTAATCCTCCACTTCTACCC 58.690 50.000 0.00 0.00 0.00 3.69
36 37 3.039011 GCTAATCCTCCACTTCTACCCA 58.961 50.000 0.00 0.00 0.00 4.51
37 38 3.181464 GCTAATCCTCCACTTCTACCCAC 60.181 52.174 0.00 0.00 0.00 4.61
38 39 2.642171 ATCCTCCACTTCTACCCACA 57.358 50.000 0.00 0.00 0.00 4.17
39 40 2.642171 TCCTCCACTTCTACCCACAT 57.358 50.000 0.00 0.00 0.00 3.21
40 41 3.769189 TCCTCCACTTCTACCCACATA 57.231 47.619 0.00 0.00 0.00 2.29
41 42 4.069312 TCCTCCACTTCTACCCACATAA 57.931 45.455 0.00 0.00 0.00 1.90
42 43 4.631234 TCCTCCACTTCTACCCACATAAT 58.369 43.478 0.00 0.00 0.00 1.28
43 44 4.654262 TCCTCCACTTCTACCCACATAATC 59.346 45.833 0.00 0.00 0.00 1.75
44 45 4.202367 CCTCCACTTCTACCCACATAATCC 60.202 50.000 0.00 0.00 0.00 3.01
45 46 4.367166 TCCACTTCTACCCACATAATCCA 58.633 43.478 0.00 0.00 0.00 3.41
46 47 4.975147 TCCACTTCTACCCACATAATCCAT 59.025 41.667 0.00 0.00 0.00 3.41
47 48 5.431731 TCCACTTCTACCCACATAATCCATT 59.568 40.000 0.00 0.00 0.00 3.16
48 49 5.532406 CCACTTCTACCCACATAATCCATTG 59.468 44.000 0.00 0.00 0.00 2.82
49 50 5.009010 CACTTCTACCCACATAATCCATTGC 59.991 44.000 0.00 0.00 0.00 3.56
50 51 4.098914 TCTACCCACATAATCCATTGCC 57.901 45.455 0.00 0.00 0.00 4.52
51 52 2.844654 ACCCACATAATCCATTGCCA 57.155 45.000 0.00 0.00 0.00 4.92
52 53 2.387757 ACCCACATAATCCATTGCCAC 58.612 47.619 0.00 0.00 0.00 5.01
53 54 2.292126 ACCCACATAATCCATTGCCACA 60.292 45.455 0.00 0.00 0.00 4.17
54 55 2.967201 CCCACATAATCCATTGCCACAT 59.033 45.455 0.00 0.00 0.00 3.21
55 56 3.006110 CCCACATAATCCATTGCCACATC 59.994 47.826 0.00 0.00 0.00 3.06
56 57 3.637694 CCACATAATCCATTGCCACATCA 59.362 43.478 0.00 0.00 0.00 3.07
57 58 4.282449 CCACATAATCCATTGCCACATCAT 59.718 41.667 0.00 0.00 0.00 2.45
58 59 5.221561 CCACATAATCCATTGCCACATCATT 60.222 40.000 0.00 0.00 0.00 2.57
59 60 6.285224 CACATAATCCATTGCCACATCATTT 58.715 36.000 0.00 0.00 0.00 2.32
60 61 6.764085 CACATAATCCATTGCCACATCATTTT 59.236 34.615 0.00 0.00 0.00 1.82
61 62 7.281324 CACATAATCCATTGCCACATCATTTTT 59.719 33.333 0.00 0.00 0.00 1.94
62 63 7.281324 ACATAATCCATTGCCACATCATTTTTG 59.719 33.333 0.00 0.00 0.00 2.44
63 64 4.886496 TCCATTGCCACATCATTTTTGA 57.114 36.364 0.00 0.00 0.00 2.69
64 65 5.224821 TCCATTGCCACATCATTTTTGAA 57.775 34.783 0.00 0.00 0.00 2.69
65 66 4.996122 TCCATTGCCACATCATTTTTGAAC 59.004 37.500 0.00 0.00 0.00 3.18
66 67 4.154556 CCATTGCCACATCATTTTTGAACC 59.845 41.667 0.00 0.00 0.00 3.62
67 68 3.399440 TGCCACATCATTTTTGAACCC 57.601 42.857 0.00 0.00 0.00 4.11
68 69 2.702478 TGCCACATCATTTTTGAACCCA 59.298 40.909 0.00 0.00 0.00 4.51
69 70 3.135348 TGCCACATCATTTTTGAACCCAA 59.865 39.130 0.00 0.00 0.00 4.12
70 71 3.747529 GCCACATCATTTTTGAACCCAAG 59.252 43.478 0.00 0.00 33.23 3.61
71 72 4.502950 GCCACATCATTTTTGAACCCAAGA 60.503 41.667 0.00 0.00 33.23 3.02
72 73 4.990426 CCACATCATTTTTGAACCCAAGAC 59.010 41.667 0.00 0.00 33.23 3.01
73 74 5.221501 CCACATCATTTTTGAACCCAAGACT 60.222 40.000 0.00 0.00 33.23 3.24
74 75 5.922544 CACATCATTTTTGAACCCAAGACTC 59.077 40.000 0.00 0.00 33.23 3.36
75 76 5.011023 ACATCATTTTTGAACCCAAGACTCC 59.989 40.000 0.00 0.00 33.23 3.85
76 77 4.541705 TCATTTTTGAACCCAAGACTCCA 58.458 39.130 0.00 0.00 33.23 3.86
77 78 4.340950 TCATTTTTGAACCCAAGACTCCAC 59.659 41.667 0.00 0.00 33.23 4.02
78 79 3.662759 TTTTGAACCCAAGACTCCACT 57.337 42.857 0.00 0.00 33.23 4.00
79 80 3.662759 TTTGAACCCAAGACTCCACTT 57.337 42.857 0.00 0.00 33.23 3.16
80 81 2.638480 TGAACCCAAGACTCCACTTG 57.362 50.000 0.00 0.00 44.50 3.16
81 82 2.123589 TGAACCCAAGACTCCACTTGA 58.876 47.619 9.55 0.00 46.85 3.02
82 83 2.104792 TGAACCCAAGACTCCACTTGAG 59.895 50.000 9.55 0.00 46.85 3.02
92 93 3.799281 CTCCACTTGAGTCTCTCCATC 57.201 52.381 0.65 0.00 36.27 3.51
93 94 2.095461 TCCACTTGAGTCTCTCCATCG 58.905 52.381 0.65 0.00 0.00 3.84
94 95 1.470632 CCACTTGAGTCTCTCCATCGC 60.471 57.143 0.65 0.00 0.00 4.58
95 96 1.476085 CACTTGAGTCTCTCCATCGCT 59.524 52.381 0.65 0.00 0.00 4.93
96 97 1.748493 ACTTGAGTCTCTCCATCGCTC 59.252 52.381 0.65 0.00 0.00 5.03
97 98 2.023673 CTTGAGTCTCTCCATCGCTCT 58.976 52.381 0.65 0.00 0.00 4.09
98 99 1.674359 TGAGTCTCTCCATCGCTCTC 58.326 55.000 0.65 0.00 0.00 3.20
99 100 0.586319 GAGTCTCTCCATCGCTCTCG 59.414 60.000 0.00 0.00 0.00 4.04
100 101 1.008995 GTCTCTCCATCGCTCTCGC 60.009 63.158 0.00 0.00 35.26 5.03
101 102 2.190170 TCTCTCCATCGCTCTCGCC 61.190 63.158 0.00 0.00 35.26 5.54
102 103 3.534970 CTCTCCATCGCTCTCGCCG 62.535 68.421 0.00 0.00 35.26 6.46
103 104 3.893763 CTCCATCGCTCTCGCCGT 61.894 66.667 0.00 0.00 35.26 5.68
104 105 3.417275 CTCCATCGCTCTCGCCGTT 62.417 63.158 0.00 0.00 35.26 4.44
105 106 2.509336 CCATCGCTCTCGCCGTTT 60.509 61.111 0.00 0.00 35.26 3.60
106 107 2.100631 CCATCGCTCTCGCCGTTTT 61.101 57.895 0.00 0.00 35.26 2.43
107 108 1.635663 CCATCGCTCTCGCCGTTTTT 61.636 55.000 0.00 0.00 35.26 1.94
127 128 5.607119 TTTTTGGTCTCGCTCAGAAATAC 57.393 39.130 0.00 0.00 30.72 1.89
128 129 2.961526 TGGTCTCGCTCAGAAATACC 57.038 50.000 0.00 0.00 30.72 2.73
129 130 2.176045 TGGTCTCGCTCAGAAATACCA 58.824 47.619 0.00 0.00 35.27 3.25
130 131 2.094182 TGGTCTCGCTCAGAAATACCAC 60.094 50.000 0.00 0.00 33.73 4.16
131 132 2.541556 GTCTCGCTCAGAAATACCACC 58.458 52.381 0.00 0.00 30.72 4.61
132 133 1.134367 TCTCGCTCAGAAATACCACCG 59.866 52.381 0.00 0.00 0.00 4.94
133 134 0.459585 TCGCTCAGAAATACCACCGC 60.460 55.000 0.00 0.00 0.00 5.68
134 135 0.460284 CGCTCAGAAATACCACCGCT 60.460 55.000 0.00 0.00 0.00 5.52
135 136 1.009829 GCTCAGAAATACCACCGCTG 58.990 55.000 0.00 0.00 0.00 5.18
136 137 1.656652 CTCAGAAATACCACCGCTGG 58.343 55.000 0.00 0.00 44.26 4.85
137 138 0.251916 TCAGAAATACCACCGCTGGG 59.748 55.000 1.01 0.00 42.74 4.45
147 148 2.433664 CCGCTGGGTTGTACGACC 60.434 66.667 22.50 22.50 39.04 4.79
155 156 1.734163 GGTTGTACGACCCAATCAGG 58.266 55.000 20.36 0.00 33.41 3.86
156 157 1.002773 GGTTGTACGACCCAATCAGGT 59.997 52.381 20.36 0.00 45.12 4.00
164 165 0.250513 ACCCAATCAGGTCTCGAAGC 59.749 55.000 0.00 0.00 33.81 3.86
165 166 0.539051 CCCAATCAGGTCTCGAAGCT 59.461 55.000 0.00 0.00 35.64 3.74
166 167 1.065854 CCCAATCAGGTCTCGAAGCTT 60.066 52.381 0.00 0.00 31.91 3.74
167 168 2.005451 CCAATCAGGTCTCGAAGCTTG 58.995 52.381 2.10 0.00 31.91 4.01
168 169 1.396301 CAATCAGGTCTCGAAGCTTGC 59.604 52.381 2.10 0.00 31.91 4.01
169 170 0.107945 ATCAGGTCTCGAAGCTTGCC 60.108 55.000 2.10 0.00 31.91 4.52
170 171 1.743252 CAGGTCTCGAAGCTTGCCC 60.743 63.158 2.10 0.00 31.91 5.36
171 172 2.217038 AGGTCTCGAAGCTTGCCCA 61.217 57.895 2.10 0.00 29.11 5.36
172 173 2.035442 GGTCTCGAAGCTTGCCCAC 61.035 63.158 2.10 0.00 0.00 4.61
173 174 1.004440 GTCTCGAAGCTTGCCCACT 60.004 57.895 2.10 0.00 0.00 4.00
174 175 1.004560 TCTCGAAGCTTGCCCACTG 60.005 57.895 2.10 0.00 0.00 3.66
175 176 1.302033 CTCGAAGCTTGCCCACTGT 60.302 57.895 2.10 0.00 0.00 3.55
176 177 1.572085 CTCGAAGCTTGCCCACTGTG 61.572 60.000 2.10 0.00 0.00 3.66
177 178 2.620112 CGAAGCTTGCCCACTGTGG 61.620 63.158 20.01 20.01 37.25 4.17
178 179 1.228245 GAAGCTTGCCCACTGTGGA 60.228 57.895 27.94 6.24 40.96 4.02
179 180 1.228367 AAGCTTGCCCACTGTGGAG 60.228 57.895 27.94 17.71 40.96 3.86
180 181 1.999634 AAGCTTGCCCACTGTGGAGT 62.000 55.000 27.94 5.96 40.96 3.85
181 182 1.968540 GCTTGCCCACTGTGGAGTC 60.969 63.158 27.94 15.86 40.96 3.36
182 183 1.302832 CTTGCCCACTGTGGAGTCC 60.303 63.158 27.94 12.94 40.96 3.85
183 184 2.055689 CTTGCCCACTGTGGAGTCCA 62.056 60.000 27.94 8.12 40.96 4.02
184 185 1.640593 TTGCCCACTGTGGAGTCCAA 61.641 55.000 27.94 19.49 40.96 3.53
185 186 1.600916 GCCCACTGTGGAGTCCAAC 60.601 63.158 27.94 9.05 40.96 3.77
186 187 1.073199 CCCACTGTGGAGTCCAACC 59.927 63.158 27.94 2.70 40.96 3.77
187 188 1.073199 CCACTGTGGAGTCCAACCC 59.927 63.158 22.33 1.86 40.96 4.11
188 189 1.073199 CACTGTGGAGTCCAACCCC 59.927 63.158 15.09 1.44 34.18 4.95
189 190 1.385347 ACTGTGGAGTCCAACCCCA 60.385 57.895 15.09 6.74 34.18 4.96
190 191 1.376466 CTGTGGAGTCCAACCCCAG 59.624 63.158 15.09 13.12 34.18 4.45
191 192 1.385347 TGTGGAGTCCAACCCCAGT 60.385 57.895 15.09 0.00 34.18 4.00
192 193 1.375326 GTGGAGTCCAACCCCAGTC 59.625 63.158 15.09 0.00 34.18 3.51
193 194 1.846124 TGGAGTCCAACCCCAGTCC 60.846 63.158 10.20 0.00 33.22 3.85
194 195 1.539124 GGAGTCCAACCCCAGTCCT 60.539 63.158 3.60 0.00 0.00 3.85
195 196 1.554583 GGAGTCCAACCCCAGTCCTC 61.555 65.000 3.60 0.00 0.00 3.71
196 197 1.889530 GAGTCCAACCCCAGTCCTCG 61.890 65.000 0.00 0.00 0.00 4.63
197 198 1.911766 GTCCAACCCCAGTCCTCGA 60.912 63.158 0.00 0.00 0.00 4.04
198 199 1.911766 TCCAACCCCAGTCCTCGAC 60.912 63.158 0.00 0.00 0.00 4.20
199 200 2.214216 CCAACCCCAGTCCTCGACA 61.214 63.158 0.00 0.00 34.60 4.35
200 201 1.293498 CAACCCCAGTCCTCGACAG 59.707 63.158 0.00 0.00 34.60 3.51
201 202 1.152312 AACCCCAGTCCTCGACAGT 60.152 57.895 0.00 0.00 34.60 3.55
202 203 0.763223 AACCCCAGTCCTCGACAGTT 60.763 55.000 0.00 0.00 34.60 3.16
203 204 0.763223 ACCCCAGTCCTCGACAGTTT 60.763 55.000 0.00 0.00 34.60 2.66
204 205 0.396811 CCCCAGTCCTCGACAGTTTT 59.603 55.000 0.00 0.00 34.60 2.43
205 206 1.621814 CCCCAGTCCTCGACAGTTTTA 59.378 52.381 0.00 0.00 34.60 1.52
206 207 2.353803 CCCCAGTCCTCGACAGTTTTAG 60.354 54.545 0.00 0.00 34.60 1.85
207 208 2.353803 CCCAGTCCTCGACAGTTTTAGG 60.354 54.545 0.00 0.00 34.60 2.69
208 209 2.338500 CAGTCCTCGACAGTTTTAGGC 58.662 52.381 0.00 0.00 34.60 3.93
209 210 1.275573 AGTCCTCGACAGTTTTAGGCC 59.724 52.381 0.00 0.00 34.60 5.19
210 211 1.001633 GTCCTCGACAGTTTTAGGCCA 59.998 52.381 5.01 0.00 32.09 5.36
211 212 1.275291 TCCTCGACAGTTTTAGGCCAG 59.725 52.381 5.01 0.00 0.00 4.85
212 213 1.676014 CCTCGACAGTTTTAGGCCAGG 60.676 57.143 5.01 0.00 0.00 4.45
213 214 0.321298 TCGACAGTTTTAGGCCAGGC 60.321 55.000 5.01 1.26 0.00 4.85
214 215 0.605319 CGACAGTTTTAGGCCAGGCA 60.605 55.000 15.19 0.00 0.00 4.75
215 216 1.616159 GACAGTTTTAGGCCAGGCAA 58.384 50.000 15.19 0.00 0.00 4.52
216 217 1.269723 GACAGTTTTAGGCCAGGCAAC 59.730 52.381 15.19 9.08 0.00 4.17
228 229 3.590824 GGCAACTCATTGGTCCCG 58.409 61.111 0.00 0.00 36.23 5.14
229 230 2.046285 GGCAACTCATTGGTCCCGG 61.046 63.158 0.00 0.00 36.23 5.73
230 231 2.700773 GCAACTCATTGGTCCCGGC 61.701 63.158 0.00 0.00 36.23 6.13
231 232 1.303236 CAACTCATTGGTCCCGGCA 60.303 57.895 0.00 0.00 31.63 5.69
232 233 1.002134 AACTCATTGGTCCCGGCAG 60.002 57.895 0.00 0.00 0.00 4.85
233 234 2.825836 CTCATTGGTCCCGGCAGC 60.826 66.667 0.00 0.00 0.00 5.25
234 235 4.424711 TCATTGGTCCCGGCAGCC 62.425 66.667 0.00 0.00 0.00 4.85
240 241 4.554036 GTCCCGGCAGCCCTGATC 62.554 72.222 5.63 0.00 0.00 2.92
259 260 4.916293 GCAGGATCCGCCGATGCA 62.916 66.667 15.97 0.00 43.43 3.96
260 261 2.031616 CAGGATCCGCCGATGCAT 59.968 61.111 5.98 0.00 43.43 3.96
261 262 2.031516 CAGGATCCGCCGATGCATC 61.032 63.158 17.10 17.10 43.43 3.91
262 263 2.031012 GGATCCGCCGATGCATCA 59.969 61.111 25.70 6.82 36.85 3.07
263 264 1.376424 GGATCCGCCGATGCATCAT 60.376 57.895 25.70 11.54 36.85 2.45
264 265 0.957395 GGATCCGCCGATGCATCATT 60.957 55.000 25.70 3.86 36.85 2.57
265 266 0.877071 GATCCGCCGATGCATCATTT 59.123 50.000 25.70 4.56 37.32 2.32
298 299 4.276926 GGACTTGCTTCCTTATAATGCAGG 59.723 45.833 0.00 0.00 36.90 4.85
326 336 2.583593 GAGTGGATCCGACGCAGC 60.584 66.667 7.39 0.00 0.00 5.25
338 348 4.170062 CGCAGCCATGGCAACGAG 62.170 66.667 34.94 22.88 44.88 4.18
370 521 1.809619 GACCGCGTTGCAGCAGATA 60.810 57.895 4.92 0.00 36.85 1.98
391 542 6.550481 AGATAGCAGATCTGAATGTGAGAGAA 59.450 38.462 27.04 0.00 0.00 2.87
392 543 5.013568 AGCAGATCTGAATGTGAGAGAAG 57.986 43.478 27.04 0.00 0.00 2.85
393 544 4.467082 AGCAGATCTGAATGTGAGAGAAGT 59.533 41.667 27.04 0.00 0.00 3.01
475 631 1.346722 CGGAGAAAACACTAGTGGGGT 59.653 52.381 26.12 10.69 34.19 4.95
532 688 4.062991 CAATAATTCTACACCTACGGGCC 58.937 47.826 0.00 0.00 35.63 5.80
536 692 0.251922 TCTACACCTACGGGCCTGTT 60.252 55.000 25.37 6.83 35.63 3.16
545 701 0.896923 ACGGGCCTGTTACGTAATCA 59.103 50.000 12.85 10.27 39.30 2.57
547 703 1.134907 CGGGCCTGTTACGTAATCACT 60.135 52.381 11.86 0.00 0.00 3.41
589 751 3.896133 CGCCAGGTGCCATGATGC 61.896 66.667 0.00 0.00 36.24 3.91
676 838 9.581099 GTATAAAATTGGTTAGATGTTTGTGGG 57.419 33.333 0.00 0.00 0.00 4.61
687 849 0.887933 GTTTGTGGGTAGGCATGGTG 59.112 55.000 0.00 0.00 0.00 4.17
758 921 4.225942 TCATGGAAATGGAGTAGCTGTCTT 59.774 41.667 0.00 0.00 0.00 3.01
783 946 0.670162 GCCTACATGCGGCAAATCAT 59.330 50.000 18.79 0.00 46.77 2.45
842 1013 1.344114 GGATGCCAAAAGAACTTGCCA 59.656 47.619 0.00 0.00 0.00 4.92
843 1014 2.027837 GGATGCCAAAAGAACTTGCCAT 60.028 45.455 0.00 0.00 0.00 4.40
844 1015 2.529780 TGCCAAAAGAACTTGCCATG 57.470 45.000 0.00 0.00 0.00 3.66
845 1016 1.150827 GCCAAAAGAACTTGCCATGC 58.849 50.000 0.00 0.00 0.00 4.06
846 1017 1.421382 CCAAAAGAACTTGCCATGCG 58.579 50.000 0.00 0.00 0.00 4.73
847 1018 1.421382 CAAAAGAACTTGCCATGCGG 58.579 50.000 0.00 0.00 0.00 5.69
916 1087 2.048597 TCGTTGGGCGCTACAGTG 60.049 61.111 7.64 3.80 41.07 3.66
928 1099 2.094182 CGCTACAGTGGATTAGGTGTGT 60.094 50.000 0.00 0.00 0.00 3.72
929 1100 3.262420 GCTACAGTGGATTAGGTGTGTG 58.738 50.000 0.00 0.00 0.00 3.82
930 1101 3.306780 GCTACAGTGGATTAGGTGTGTGT 60.307 47.826 0.00 0.00 0.00 3.72
931 1102 3.126001 ACAGTGGATTAGGTGTGTGTG 57.874 47.619 0.00 0.00 0.00 3.82
938 1109 3.994392 GGATTAGGTGTGTGTGTACTGTG 59.006 47.826 0.00 0.00 0.00 3.66
963 1134 0.810648 TTTGATGAACGCAGATGCCC 59.189 50.000 0.00 0.00 37.91 5.36
984 1165 2.100916 CACAGGCCTATAAGTAGCACGT 59.899 50.000 3.98 0.00 0.00 4.49
996 1177 0.038251 TAGCACGTGGTCAAGCTCAG 60.038 55.000 25.54 0.00 38.47 3.35
1000 1181 2.320587 CGTGGTCAAGCTCAGCACC 61.321 63.158 17.75 0.00 38.75 5.01
1002 1183 1.227943 TGGTCAAGCTCAGCACCAC 60.228 57.895 3.17 0.00 33.83 4.16
1003 1184 1.227943 GGTCAAGCTCAGCACCACA 60.228 57.895 0.00 0.00 0.00 4.17
1004 1185 1.510480 GGTCAAGCTCAGCACCACAC 61.510 60.000 0.00 0.00 0.00 3.82
1005 1186 0.533755 GTCAAGCTCAGCACCACACT 60.534 55.000 0.00 0.00 0.00 3.55
1006 1187 0.250038 TCAAGCTCAGCACCACACTC 60.250 55.000 0.00 0.00 0.00 3.51
1007 1188 1.301244 AAGCTCAGCACCACACTCG 60.301 57.895 0.00 0.00 0.00 4.18
1008 1189 2.029666 GCTCAGCACCACACTCGT 59.970 61.111 0.00 0.00 0.00 4.18
1009 1190 1.595382 GCTCAGCACCACACTCGTT 60.595 57.895 0.00 0.00 0.00 3.85
1010 1191 1.835483 GCTCAGCACCACACTCGTTG 61.835 60.000 0.00 0.00 0.00 4.10
1011 1192 1.224069 CTCAGCACCACACTCGTTGG 61.224 60.000 0.00 0.00 0.00 3.77
1561 1816 0.036671 TCACATGCTGTCTGCCTCAG 60.037 55.000 0.00 0.00 42.00 3.35
1630 1923 8.446599 AGTTGTAGTTGTATTGTAAACTTGCT 57.553 30.769 0.00 0.00 37.74 3.91
1636 1929 6.426937 AGTTGTATTGTAAACTTGCTGATCGT 59.573 34.615 0.00 0.00 32.75 3.73
1746 2056 4.527564 CAGCGTTTCTTCTTTTGGTAGTG 58.472 43.478 0.00 0.00 0.00 2.74
1755 2065 3.292460 TCTTTTGGTAGTGGGTTGTTGG 58.708 45.455 0.00 0.00 0.00 3.77
1796 2137 2.359975 GCCTGCGTGCCTAGGTTT 60.360 61.111 11.31 0.00 36.44 3.27
1820 2161 3.711190 TGGCCTGATACTCTATTTGCTCA 59.289 43.478 3.32 0.00 0.00 4.26
1823 2164 5.279910 GGCCTGATACTCTATTTGCTCATCT 60.280 44.000 0.00 0.00 0.00 2.90
1859 2200 5.805486 TGCTTTAGCGTCTGTTATACTCTTG 59.195 40.000 0.00 0.00 45.83 3.02
1860 2201 5.232414 GCTTTAGCGTCTGTTATACTCTTGG 59.768 44.000 0.00 0.00 0.00 3.61
1861 2202 5.909621 TTAGCGTCTGTTATACTCTTGGT 57.090 39.130 0.00 0.00 0.00 3.67
1867 2208 4.020485 GTCTGTTATACTCTTGGTGGTGGT 60.020 45.833 0.00 0.00 0.00 4.16
1883 2224 7.818642 TGGTGGTGGTTTTATTTATAAAGTCG 58.181 34.615 3.94 0.00 34.13 4.18
1938 2279 3.691118 ACCGCAACTAGATCAGTAACGTA 59.309 43.478 0.00 0.00 36.04 3.57
2012 2400 4.603231 TTGACGTTTACAACTCCACAAC 57.397 40.909 0.00 0.00 0.00 3.32
2075 2573 6.677431 GCACCAATTTGAGCTCTCTTCATTAG 60.677 42.308 16.19 2.26 0.00 1.73
2102 2600 8.729805 AAAAGAGAGCTAGATTACAATCCAAG 57.270 34.615 0.00 0.00 36.04 3.61
2113 2731 8.894768 AGATTACAATCCAAGAGCTACATTAC 57.105 34.615 0.00 0.00 36.04 1.89
2126 2744 9.601217 AAGAGCTACATTACGAGTCAATAAAAT 57.399 29.630 0.00 0.00 0.00 1.82
2129 2747 9.811995 AGCTACATTACGAGTCAATAAAATACA 57.188 29.630 0.00 0.00 0.00 2.29
2130 2748 9.845305 GCTACATTACGAGTCAATAAAATACAC 57.155 33.333 0.00 0.00 0.00 2.90
2206 2824 8.932945 TTTTGCATTGTTGTTTCATGTACTTA 57.067 26.923 0.00 0.00 0.00 2.24
2267 2888 6.722328 TGGACACTTATCAGACTCTTCTCTA 58.278 40.000 0.00 0.00 0.00 2.43
2465 3086 2.126888 GGCGTTGTTGGCATGTCG 60.127 61.111 0.00 0.00 0.00 4.35
2468 3089 1.938125 CGTTGTTGGCATGTCGACA 59.062 52.632 22.48 22.48 0.00 4.35
2721 3342 2.610433 GCATCACACTCAAGATCGACA 58.390 47.619 0.00 0.00 0.00 4.35
2744 3374 6.662234 ACAATGAGGATGACATCAACAAGAAT 59.338 34.615 17.08 0.00 40.16 2.40
3195 3848 4.379174 GGAATGGCCGCGACATAT 57.621 55.556 8.23 3.14 27.35 1.78
3435 4088 1.271379 ACCATGTTCGGGTTGGAGAAG 60.271 52.381 0.00 0.00 34.10 2.85
3455 7239 2.307686 AGGGCGAGGGAGAATTTGTAAA 59.692 45.455 0.00 0.00 0.00 2.01
3601 7393 9.669353 GTTGGTTTTCTCATATGCATTACTATG 57.331 33.333 3.54 2.21 34.76 2.23
3616 7408 6.017605 GCATTACTATGTTTGCATCTGCTAGT 60.018 38.462 3.53 5.24 36.69 2.57
3670 7462 9.710818 AGTAGAGGGTTTCTATTTGTAGTATGA 57.289 33.333 0.00 0.00 40.42 2.15
3688 7480 5.648092 AGTATGATTCTACTTTTGTGTGCCC 59.352 40.000 0.00 0.00 0.00 5.36
3742 7534 1.628846 GTCCTAACATCACCCCACACT 59.371 52.381 0.00 0.00 0.00 3.55
3888 7680 8.175069 ACATAATACATGTCAAACGAATGTCAC 58.825 33.333 0.00 0.00 36.08 3.67
4008 7800 1.688735 CCATACTGATCTTCGGAGGCA 59.311 52.381 0.00 0.00 0.00 4.75
4014 7806 4.082125 ACTGATCTTCGGAGGCAATTTTT 58.918 39.130 0.00 0.00 0.00 1.94
4042 7834 6.347696 TGAATTTGCCTCACACTTCAAAATT 58.652 32.000 0.00 0.00 32.97 1.82
4047 7839 6.647334 TGCCTCACACTTCAAAATTATGAA 57.353 33.333 0.00 0.00 37.70 2.57
4068 7860 6.785076 TGAAATAGGTTGTTGGAATGGAGTA 58.215 36.000 0.00 0.00 0.00 2.59
4128 7920 4.141779 GGGTATTGGGACGATGTTCTACTT 60.142 45.833 0.00 0.00 0.00 2.24
4132 7924 1.278238 GGACGATGTTCTACTTGCCG 58.722 55.000 0.00 0.00 0.00 5.69
4150 7942 3.321111 TGCCGTACTATCAAAGGGATCTC 59.679 47.826 0.00 0.00 37.44 2.75
4227 8019 6.888105 TGCAGTAAGACAAGGATCATTGATA 58.112 36.000 25.68 12.59 34.20 2.15
4247 8039 8.789881 TTGATAAAAACAATGACAAACCTACG 57.210 30.769 0.00 0.00 0.00 3.51
4298 8091 4.539293 AGGGCATCTATAGCAGATCCAAAT 59.461 41.667 0.00 0.00 42.40 2.32
4299 8092 4.639310 GGGCATCTATAGCAGATCCAAATG 59.361 45.833 0.00 0.00 42.40 2.32
4303 8096 7.122353 GGCATCTATAGCAGATCCAAATGAATT 59.878 37.037 0.00 0.00 42.40 2.17
4316 8109 7.601705 TCCAAATGAATTAATCCCCATCTTC 57.398 36.000 0.00 0.00 0.00 2.87
4318 8111 7.506938 TCCAAATGAATTAATCCCCATCTTCTC 59.493 37.037 0.00 0.00 0.00 2.87
4319 8112 7.256083 CCAAATGAATTAATCCCCATCTTCTCC 60.256 40.741 0.00 0.00 0.00 3.71
4322 8115 2.133858 TAATCCCCATCTTCTCCCCC 57.866 55.000 0.00 0.00 0.00 5.40
4369 8162 8.874744 AGGGGACTAAATTTTTCTTAGTTACC 57.125 34.615 0.00 0.78 39.22 2.85
4384 8177 3.956744 AGTTACCAGATTCTCCCAAAGC 58.043 45.455 0.00 0.00 0.00 3.51
4390 8183 2.099263 CAGATTCTCCCAAAGCAGCATG 59.901 50.000 0.00 0.00 40.87 4.06
4394 8187 2.221906 CTCCCAAAGCAGCATGTGGC 62.222 60.000 0.00 0.00 45.30 5.01
4395 8188 2.263540 CCAAAGCAGCATGTGGCC 59.736 61.111 0.00 0.00 46.50 5.36
4423 8216 4.643385 GCGTGCGTCCGTGTGTTG 62.643 66.667 0.00 0.00 0.00 3.33
4424 8217 3.259020 CGTGCGTCCGTGTGTTGT 61.259 61.111 0.00 0.00 0.00 3.32
4425 8218 2.624264 GTGCGTCCGTGTGTTGTC 59.376 61.111 0.00 0.00 0.00 3.18
4441 8570 1.080434 GTCTGTCCACTGACGAGCC 60.080 63.158 0.00 0.00 44.86 4.70
4470 8599 1.752501 CGTATCCAAGTGCTTCGGCG 61.753 60.000 0.00 0.00 45.37 6.46
4471 8600 0.739813 GTATCCAAGTGCTTCGGCGT 60.740 55.000 6.85 0.00 45.37 5.68
4489 8618 0.798771 GTCGACATCTCTCCACGTGC 60.799 60.000 10.91 0.00 0.00 5.34
4499 8628 2.507102 CCACGTGCTACTCGCTGG 60.507 66.667 10.91 0.00 40.11 4.85
4504 8633 1.139947 GTGCTACTCGCTGGTCCTC 59.860 63.158 0.00 0.00 40.11 3.71
4507 8636 1.722677 CTACTCGCTGGTCCTCGAC 59.277 63.158 3.24 0.00 0.00 4.20
4516 8645 2.402787 GTCCTCGACGTCTACGGC 59.597 66.667 14.70 2.35 45.58 5.68
4522 8651 2.654404 GACGTCTACGGCGCCATC 60.654 66.667 28.98 10.09 44.95 3.51
4539 8668 1.137697 ATCTGCTCCATCCTCATGCA 58.862 50.000 0.00 0.00 0.00 3.96
4542 8671 0.841289 TGCTCCATCCTCATGCATCA 59.159 50.000 0.00 0.00 0.00 3.07
4546 8675 3.139850 CTCCATCCTCATGCATCAGTTC 58.860 50.000 0.00 0.00 0.00 3.01
4550 8679 1.487976 TCCTCATGCATCAGTTCCTCC 59.512 52.381 0.00 0.00 0.00 4.30
4551 8680 1.579698 CTCATGCATCAGTTCCTCCG 58.420 55.000 0.00 0.00 0.00 4.63
4557 8686 2.670148 ATCAGTTCCTCCGGTGGCC 61.670 63.158 18.03 10.45 0.00 5.36
4592 8721 1.226603 GCTATCGCCGTCGTCAAGT 60.227 57.895 0.00 0.00 36.96 3.16
4596 8725 1.945354 ATCGCCGTCGTCAAGTCCAT 61.945 55.000 0.00 0.00 36.96 3.41
4597 8726 2.158959 CGCCGTCGTCAAGTCCATC 61.159 63.158 0.00 0.00 0.00 3.51
4640 8769 2.224867 GGTGTCATGGAGGGGATTATGG 60.225 54.545 0.00 0.00 0.00 2.74
4650 8779 0.537371 GGGATTATGGCCGGGTCTTG 60.537 60.000 2.18 0.00 0.00 3.02
4657 8786 2.335011 GCCGGGTCTTGTGTTTGC 59.665 61.111 2.18 0.00 0.00 3.68
4679 8808 2.772691 GGCACGACCTACTCCCTCG 61.773 68.421 0.00 0.00 34.51 4.63
4714 8843 0.104882 TCCCTACACCCACCAGAACA 60.105 55.000 0.00 0.00 0.00 3.18
4770 8899 0.887387 GCGACTTTTGGCAGGTGGTA 60.887 55.000 0.00 0.00 0.00 3.25
4779 8908 1.147153 GCAGGTGGTAGAGGATGCC 59.853 63.158 0.00 0.00 0.00 4.40
4807 8936 1.669115 CTCAAGAGCCGGTGGTGTG 60.669 63.158 1.90 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.274288 GAGGATTAGCTTTGTGGTGGAG 58.726 50.000 0.00 0.00 0.00 3.86
5 6 2.290896 TGGAGGATTAGCTTTGTGGTGG 60.291 50.000 0.00 0.00 0.00 4.61
6 7 2.749621 GTGGAGGATTAGCTTTGTGGTG 59.250 50.000 0.00 0.00 0.00 4.17
7 8 2.644798 AGTGGAGGATTAGCTTTGTGGT 59.355 45.455 0.00 0.00 0.00 4.16
8 9 3.356529 AGTGGAGGATTAGCTTTGTGG 57.643 47.619 0.00 0.00 0.00 4.17
9 10 4.583871 AGAAGTGGAGGATTAGCTTTGTG 58.416 43.478 0.00 0.00 0.00 3.33
10 11 4.917906 AGAAGTGGAGGATTAGCTTTGT 57.082 40.909 0.00 0.00 0.00 2.83
11 12 5.119694 GGTAGAAGTGGAGGATTAGCTTTG 58.880 45.833 0.00 0.00 0.00 2.77
12 13 4.164413 GGGTAGAAGTGGAGGATTAGCTTT 59.836 45.833 0.00 0.00 0.00 3.51
13 14 3.712218 GGGTAGAAGTGGAGGATTAGCTT 59.288 47.826 0.00 0.00 0.00 3.74
14 15 3.310193 GGGTAGAAGTGGAGGATTAGCT 58.690 50.000 0.00 0.00 0.00 3.32
15 16 3.039011 TGGGTAGAAGTGGAGGATTAGC 58.961 50.000 0.00 0.00 0.00 3.09
16 17 4.030913 TGTGGGTAGAAGTGGAGGATTAG 58.969 47.826 0.00 0.00 0.00 1.73
17 18 4.069312 TGTGGGTAGAAGTGGAGGATTA 57.931 45.455 0.00 0.00 0.00 1.75
18 19 2.915869 TGTGGGTAGAAGTGGAGGATT 58.084 47.619 0.00 0.00 0.00 3.01
19 20 2.642171 TGTGGGTAGAAGTGGAGGAT 57.358 50.000 0.00 0.00 0.00 3.24
20 21 2.642171 ATGTGGGTAGAAGTGGAGGA 57.358 50.000 0.00 0.00 0.00 3.71
21 22 4.202367 GGATTATGTGGGTAGAAGTGGAGG 60.202 50.000 0.00 0.00 0.00 4.30
22 23 4.408921 TGGATTATGTGGGTAGAAGTGGAG 59.591 45.833 0.00 0.00 0.00 3.86
23 24 4.367166 TGGATTATGTGGGTAGAAGTGGA 58.633 43.478 0.00 0.00 0.00 4.02
24 25 4.771114 TGGATTATGTGGGTAGAAGTGG 57.229 45.455 0.00 0.00 0.00 4.00
25 26 5.009010 GCAATGGATTATGTGGGTAGAAGTG 59.991 44.000 0.00 0.00 0.00 3.16
26 27 5.133221 GCAATGGATTATGTGGGTAGAAGT 58.867 41.667 0.00 0.00 0.00 3.01
27 28 4.520492 GGCAATGGATTATGTGGGTAGAAG 59.480 45.833 0.00 0.00 0.00 2.85
28 29 4.079500 TGGCAATGGATTATGTGGGTAGAA 60.080 41.667 0.00 0.00 0.00 2.10
29 30 3.461458 TGGCAATGGATTATGTGGGTAGA 59.539 43.478 0.00 0.00 0.00 2.59
30 31 3.569701 GTGGCAATGGATTATGTGGGTAG 59.430 47.826 0.00 0.00 0.00 3.18
31 32 3.053320 TGTGGCAATGGATTATGTGGGTA 60.053 43.478 0.00 0.00 0.00 3.69
32 33 2.292126 TGTGGCAATGGATTATGTGGGT 60.292 45.455 0.00 0.00 0.00 4.51
33 34 2.386779 TGTGGCAATGGATTATGTGGG 58.613 47.619 0.00 0.00 0.00 4.61
34 35 3.637694 TGATGTGGCAATGGATTATGTGG 59.362 43.478 0.00 0.00 0.00 4.17
35 36 4.922471 TGATGTGGCAATGGATTATGTG 57.078 40.909 0.00 0.00 0.00 3.21
36 37 6.488769 AAATGATGTGGCAATGGATTATGT 57.511 33.333 0.00 0.00 0.00 2.29
37 38 7.496263 TCAAAAATGATGTGGCAATGGATTATG 59.504 33.333 0.00 0.00 0.00 1.90
38 39 7.566569 TCAAAAATGATGTGGCAATGGATTAT 58.433 30.769 0.00 0.00 0.00 1.28
39 40 6.944096 TCAAAAATGATGTGGCAATGGATTA 58.056 32.000 0.00 0.00 0.00 1.75
40 41 5.806818 TCAAAAATGATGTGGCAATGGATT 58.193 33.333 0.00 0.00 0.00 3.01
41 42 5.423704 TCAAAAATGATGTGGCAATGGAT 57.576 34.783 0.00 0.00 0.00 3.41
42 43 4.886496 TCAAAAATGATGTGGCAATGGA 57.114 36.364 0.00 0.00 0.00 3.41
43 44 4.154556 GGTTCAAAAATGATGTGGCAATGG 59.845 41.667 0.00 0.00 0.00 3.16
44 45 4.154556 GGGTTCAAAAATGATGTGGCAATG 59.845 41.667 0.00 0.00 0.00 2.82
45 46 4.202440 TGGGTTCAAAAATGATGTGGCAAT 60.202 37.500 0.00 0.00 0.00 3.56
46 47 3.135348 TGGGTTCAAAAATGATGTGGCAA 59.865 39.130 0.00 0.00 0.00 4.52
47 48 2.702478 TGGGTTCAAAAATGATGTGGCA 59.298 40.909 0.00 0.00 0.00 4.92
48 49 3.399440 TGGGTTCAAAAATGATGTGGC 57.601 42.857 0.00 0.00 0.00 5.01
49 50 4.990426 GTCTTGGGTTCAAAAATGATGTGG 59.010 41.667 0.00 0.00 31.77 4.17
50 51 5.846203 AGTCTTGGGTTCAAAAATGATGTG 58.154 37.500 0.00 0.00 31.77 3.21
51 52 5.011023 GGAGTCTTGGGTTCAAAAATGATGT 59.989 40.000 0.00 0.00 31.77 3.06
52 53 5.010922 TGGAGTCTTGGGTTCAAAAATGATG 59.989 40.000 0.00 0.00 31.77 3.07
53 54 5.011023 GTGGAGTCTTGGGTTCAAAAATGAT 59.989 40.000 0.00 0.00 31.77 2.45
54 55 4.340950 GTGGAGTCTTGGGTTCAAAAATGA 59.659 41.667 0.00 0.00 31.77 2.57
55 56 4.342092 AGTGGAGTCTTGGGTTCAAAAATG 59.658 41.667 0.00 0.00 31.77 2.32
56 57 4.546674 AGTGGAGTCTTGGGTTCAAAAAT 58.453 39.130 0.00 0.00 31.77 1.82
57 58 3.976015 AGTGGAGTCTTGGGTTCAAAAA 58.024 40.909 0.00 0.00 31.77 1.94
58 59 3.662759 AGTGGAGTCTTGGGTTCAAAA 57.337 42.857 0.00 0.00 31.77 2.44
59 60 3.053991 TCAAGTGGAGTCTTGGGTTCAAA 60.054 43.478 6.60 0.00 43.25 2.69
60 61 2.507886 TCAAGTGGAGTCTTGGGTTCAA 59.492 45.455 6.60 0.00 43.25 2.69
61 62 2.104792 CTCAAGTGGAGTCTTGGGTTCA 59.895 50.000 6.60 0.00 43.25 3.18
62 63 2.772287 CTCAAGTGGAGTCTTGGGTTC 58.228 52.381 6.60 0.00 43.25 3.62
63 64 2.938956 CTCAAGTGGAGTCTTGGGTT 57.061 50.000 6.60 0.00 43.25 4.11
73 74 2.095461 CGATGGAGAGACTCAAGTGGA 58.905 52.381 5.02 0.00 31.08 4.02
74 75 1.470632 GCGATGGAGAGACTCAAGTGG 60.471 57.143 5.02 0.00 31.08 4.00
75 76 1.476085 AGCGATGGAGAGACTCAAGTG 59.524 52.381 5.02 0.00 31.08 3.16
76 77 1.748493 GAGCGATGGAGAGACTCAAGT 59.252 52.381 5.02 0.00 31.08 3.16
77 78 2.023673 AGAGCGATGGAGAGACTCAAG 58.976 52.381 5.02 0.00 31.08 3.02
78 79 2.020720 GAGAGCGATGGAGAGACTCAA 58.979 52.381 5.02 0.00 31.08 3.02
79 80 1.674359 GAGAGCGATGGAGAGACTCA 58.326 55.000 5.02 0.00 31.08 3.41
80 81 0.586319 CGAGAGCGATGGAGAGACTC 59.414 60.000 0.00 0.00 40.82 3.36
81 82 2.701587 CGAGAGCGATGGAGAGACT 58.298 57.895 0.00 0.00 40.82 3.24
105 106 4.454504 GGTATTTCTGAGCGAGACCAAAAA 59.545 41.667 0.00 0.00 0.00 1.94
106 107 4.000988 GGTATTTCTGAGCGAGACCAAAA 58.999 43.478 0.00 0.00 0.00 2.44
107 108 3.007506 TGGTATTTCTGAGCGAGACCAAA 59.992 43.478 0.05 0.00 31.58 3.28
108 109 2.565391 TGGTATTTCTGAGCGAGACCAA 59.435 45.455 0.05 0.00 31.58 3.67
109 110 2.094182 GTGGTATTTCTGAGCGAGACCA 60.094 50.000 0.00 0.00 31.87 4.02
110 111 2.541556 GTGGTATTTCTGAGCGAGACC 58.458 52.381 0.00 0.00 0.00 3.85
111 112 2.541556 GGTGGTATTTCTGAGCGAGAC 58.458 52.381 0.00 0.00 0.00 3.36
112 113 1.134367 CGGTGGTATTTCTGAGCGAGA 59.866 52.381 0.00 0.00 0.00 4.04
113 114 1.560923 CGGTGGTATTTCTGAGCGAG 58.439 55.000 0.00 0.00 0.00 5.03
114 115 0.459585 GCGGTGGTATTTCTGAGCGA 60.460 55.000 0.00 0.00 0.00 4.93
115 116 0.460284 AGCGGTGGTATTTCTGAGCG 60.460 55.000 0.00 0.00 0.00 5.03
116 117 1.009829 CAGCGGTGGTATTTCTGAGC 58.990 55.000 6.74 0.00 0.00 4.26
117 118 1.656652 CCAGCGGTGGTATTTCTGAG 58.343 55.000 25.51 0.00 39.30 3.35
118 119 0.251916 CCCAGCGGTGGTATTTCTGA 59.748 55.000 30.39 0.00 43.23 3.27
119 120 0.035439 ACCCAGCGGTGGTATTTCTG 60.035 55.000 30.39 16.39 42.48 3.02
120 121 0.696501 AACCCAGCGGTGGTATTTCT 59.303 50.000 30.39 6.71 43.71 2.52
121 122 0.808755 CAACCCAGCGGTGGTATTTC 59.191 55.000 30.39 0.00 43.71 2.17
122 123 0.111639 ACAACCCAGCGGTGGTATTT 59.888 50.000 30.39 17.88 45.28 1.40
123 124 0.985760 TACAACCCAGCGGTGGTATT 59.014 50.000 30.39 21.32 45.28 1.89
124 125 2.686491 TACAACCCAGCGGTGGTAT 58.314 52.632 30.39 16.69 45.28 2.73
125 126 1.672898 GTACAACCCAGCGGTGGTA 59.327 57.895 30.39 14.63 45.28 3.25
127 128 2.740826 CGTACAACCCAGCGGTGG 60.741 66.667 26.78 26.78 43.71 4.61
128 129 2.025418 GTCGTACAACCCAGCGGTG 61.025 63.158 7.86 7.86 43.71 4.94
130 131 2.433664 GGTCGTACAACCCAGCGG 60.434 66.667 0.00 0.00 32.82 5.52
136 137 1.002773 ACCTGATTGGGTCGTACAACC 59.997 52.381 0.00 0.00 41.11 3.77
137 138 2.344025 GACCTGATTGGGTCGTACAAC 58.656 52.381 0.00 0.00 44.94 3.32
138 139 2.754946 GACCTGATTGGGTCGTACAA 57.245 50.000 0.00 0.00 44.94 2.41
145 146 0.250513 GCTTCGAGACCTGATTGGGT 59.749 55.000 0.00 0.00 43.07 4.51
146 147 0.539051 AGCTTCGAGACCTGATTGGG 59.461 55.000 0.00 0.00 41.11 4.12
147 148 2.005451 CAAGCTTCGAGACCTGATTGG 58.995 52.381 0.00 0.00 42.93 3.16
148 149 1.396301 GCAAGCTTCGAGACCTGATTG 59.604 52.381 0.00 0.00 0.00 2.67
149 150 1.677217 GGCAAGCTTCGAGACCTGATT 60.677 52.381 0.00 0.00 0.00 2.57
150 151 0.107945 GGCAAGCTTCGAGACCTGAT 60.108 55.000 0.00 0.00 0.00 2.90
151 152 1.293498 GGCAAGCTTCGAGACCTGA 59.707 57.895 0.00 0.00 0.00 3.86
152 153 1.743252 GGGCAAGCTTCGAGACCTG 60.743 63.158 0.00 0.00 0.00 4.00
153 154 2.217038 TGGGCAAGCTTCGAGACCT 61.217 57.895 8.52 0.00 0.00 3.85
154 155 2.035442 GTGGGCAAGCTTCGAGACC 61.035 63.158 0.00 0.00 0.00 3.85
155 156 1.004440 AGTGGGCAAGCTTCGAGAC 60.004 57.895 0.00 0.00 0.00 3.36
156 157 1.004560 CAGTGGGCAAGCTTCGAGA 60.005 57.895 0.00 0.00 0.00 4.04
157 158 1.302033 ACAGTGGGCAAGCTTCGAG 60.302 57.895 0.00 0.00 0.00 4.04
158 159 1.597854 CACAGTGGGCAAGCTTCGA 60.598 57.895 0.00 0.00 0.00 3.71
159 160 2.620112 CCACAGTGGGCAAGCTTCG 61.620 63.158 12.40 0.00 32.67 3.79
160 161 1.228245 TCCACAGTGGGCAAGCTTC 60.228 57.895 20.14 0.00 38.32 3.86
161 162 1.228367 CTCCACAGTGGGCAAGCTT 60.228 57.895 20.14 0.00 38.32 3.74
162 163 2.403132 GACTCCACAGTGGGCAAGCT 62.403 60.000 20.14 1.27 38.32 3.74
163 164 1.968540 GACTCCACAGTGGGCAAGC 60.969 63.158 20.14 3.11 38.32 4.01
164 165 1.302832 GGACTCCACAGTGGGCAAG 60.303 63.158 20.14 12.17 38.32 4.01
165 166 1.640593 TTGGACTCCACAGTGGGCAA 61.641 55.000 20.14 8.05 38.32 4.52
166 167 2.075566 TTGGACTCCACAGTGGGCA 61.076 57.895 20.14 0.00 38.32 5.36
167 168 1.600916 GTTGGACTCCACAGTGGGC 60.601 63.158 20.14 9.34 38.32 5.36
168 169 1.073199 GGTTGGACTCCACAGTGGG 59.927 63.158 20.14 12.59 38.32 4.61
169 170 1.073199 GGGTTGGACTCCACAGTGG 59.927 63.158 14.19 14.19 39.43 4.00
170 171 1.073199 GGGGTTGGACTCCACAGTG 59.927 63.158 0.00 0.00 39.07 3.66
171 172 1.385347 TGGGGTTGGACTCCACAGT 60.385 57.895 0.00 0.00 42.04 3.55
172 173 1.376466 CTGGGGTTGGACTCCACAG 59.624 63.158 0.00 0.00 42.04 3.66
173 174 1.385347 ACTGGGGTTGGACTCCACA 60.385 57.895 0.00 0.00 42.04 4.17
174 175 1.375326 GACTGGGGTTGGACTCCAC 59.625 63.158 0.00 0.00 42.04 4.02
176 177 1.539124 AGGACTGGGGTTGGACTCC 60.539 63.158 0.00 0.00 39.92 3.85
177 178 1.889530 CGAGGACTGGGGTTGGACTC 61.890 65.000 0.00 0.00 0.00 3.36
178 179 1.913762 CGAGGACTGGGGTTGGACT 60.914 63.158 0.00 0.00 0.00 3.85
179 180 1.911766 TCGAGGACTGGGGTTGGAC 60.912 63.158 0.00 0.00 0.00 4.02
180 181 1.911766 GTCGAGGACTGGGGTTGGA 60.912 63.158 0.00 0.00 0.00 3.53
181 182 2.172483 CTGTCGAGGACTGGGGTTGG 62.172 65.000 0.00 0.00 33.15 3.77
182 183 1.293498 CTGTCGAGGACTGGGGTTG 59.707 63.158 0.00 0.00 33.15 3.77
183 184 0.763223 AACTGTCGAGGACTGGGGTT 60.763 55.000 7.42 1.26 36.14 4.11
184 185 0.763223 AAACTGTCGAGGACTGGGGT 60.763 55.000 7.42 0.00 36.14 4.95
185 186 0.396811 AAAACTGTCGAGGACTGGGG 59.603 55.000 7.42 0.00 36.14 4.96
186 187 2.353803 CCTAAAACTGTCGAGGACTGGG 60.354 54.545 7.42 0.00 36.14 4.45
187 188 2.931320 GCCTAAAACTGTCGAGGACTGG 60.931 54.545 6.74 0.00 36.14 4.00
188 189 2.338500 GCCTAAAACTGTCGAGGACTG 58.662 52.381 6.74 1.73 37.49 3.51
189 190 1.275573 GGCCTAAAACTGTCGAGGACT 59.724 52.381 0.00 0.00 33.92 3.85
190 191 1.001633 TGGCCTAAAACTGTCGAGGAC 59.998 52.381 3.32 4.58 37.64 3.85
191 192 1.275291 CTGGCCTAAAACTGTCGAGGA 59.725 52.381 3.32 0.00 0.00 3.71
192 193 1.676014 CCTGGCCTAAAACTGTCGAGG 60.676 57.143 3.32 0.00 0.00 4.63
193 194 1.726853 CCTGGCCTAAAACTGTCGAG 58.273 55.000 3.32 0.00 0.00 4.04
194 195 0.321298 GCCTGGCCTAAAACTGTCGA 60.321 55.000 7.66 0.00 0.00 4.20
195 196 0.605319 TGCCTGGCCTAAAACTGTCG 60.605 55.000 17.53 0.00 0.00 4.35
196 197 1.269723 GTTGCCTGGCCTAAAACTGTC 59.730 52.381 17.53 0.00 0.00 3.51
197 198 1.133482 AGTTGCCTGGCCTAAAACTGT 60.133 47.619 17.53 0.00 30.17 3.55
198 199 1.541588 GAGTTGCCTGGCCTAAAACTG 59.458 52.381 22.26 0.00 31.45 3.16
199 200 1.144913 TGAGTTGCCTGGCCTAAAACT 59.855 47.619 18.66 18.66 33.91 2.66
200 201 1.616159 TGAGTTGCCTGGCCTAAAAC 58.384 50.000 17.53 13.55 0.00 2.43
201 202 2.562298 CAATGAGTTGCCTGGCCTAAAA 59.438 45.455 17.53 0.00 0.00 1.52
202 203 2.170166 CAATGAGTTGCCTGGCCTAAA 58.830 47.619 17.53 0.22 0.00 1.85
203 204 1.616725 CCAATGAGTTGCCTGGCCTAA 60.617 52.381 17.53 1.07 33.90 2.69
204 205 0.034186 CCAATGAGTTGCCTGGCCTA 60.034 55.000 17.53 0.67 33.90 3.93
205 206 1.304713 CCAATGAGTTGCCTGGCCT 60.305 57.895 17.53 6.70 33.90 5.19
206 207 1.598701 GACCAATGAGTTGCCTGGCC 61.599 60.000 17.53 0.00 33.90 5.36
207 208 1.598701 GGACCAATGAGTTGCCTGGC 61.599 60.000 12.87 12.87 33.90 4.85
208 209 0.967380 GGGACCAATGAGTTGCCTGG 60.967 60.000 0.00 0.00 33.90 4.45
209 210 1.308069 CGGGACCAATGAGTTGCCTG 61.308 60.000 0.00 0.00 33.90 4.85
210 211 1.002134 CGGGACCAATGAGTTGCCT 60.002 57.895 0.00 0.00 33.90 4.75
211 212 2.046285 CCGGGACCAATGAGTTGCC 61.046 63.158 0.00 0.00 33.90 4.52
212 213 2.700773 GCCGGGACCAATGAGTTGC 61.701 63.158 2.18 0.00 33.90 4.17
213 214 1.303236 TGCCGGGACCAATGAGTTG 60.303 57.895 2.18 0.00 35.05 3.16
214 215 1.002134 CTGCCGGGACCAATGAGTT 60.002 57.895 2.18 0.00 0.00 3.01
215 216 2.671070 CTGCCGGGACCAATGAGT 59.329 61.111 2.18 0.00 0.00 3.41
216 217 2.825836 GCTGCCGGGACCAATGAG 60.826 66.667 2.18 0.00 0.00 2.90
217 218 4.424711 GGCTGCCGGGACCAATGA 62.425 66.667 1.35 0.00 0.00 2.57
223 224 4.554036 GATCAGGGCTGCCGGGAC 62.554 72.222 13.40 0.00 0.00 4.46
242 243 4.916293 TGCATCGGCGGATCCTGC 62.916 66.667 14.42 14.42 45.35 4.85
243 244 2.031516 GATGCATCGGCGGATCCTG 61.032 63.158 11.68 4.67 45.35 3.86
244 245 1.834856 ATGATGCATCGGCGGATCCT 61.835 55.000 21.34 0.00 45.35 3.24
245 246 0.957395 AATGATGCATCGGCGGATCC 60.957 55.000 21.34 0.00 45.35 3.36
246 247 0.877071 AAATGATGCATCGGCGGATC 59.123 50.000 21.34 4.69 45.35 3.36
247 248 0.594602 CAAATGATGCATCGGCGGAT 59.405 50.000 21.34 6.43 45.35 4.18
248 249 1.446516 CCAAATGATGCATCGGCGGA 61.447 55.000 21.34 4.11 45.35 5.54
249 250 1.008194 CCAAATGATGCATCGGCGG 60.008 57.895 21.34 14.62 45.35 6.13
250 251 0.594602 ATCCAAATGATGCATCGGCG 59.405 50.000 21.34 0.00 45.35 6.46
251 252 1.400629 CGATCCAAATGATGCATCGGC 60.401 52.381 21.34 0.00 41.68 5.54
252 253 2.606717 CGATCCAAATGATGCATCGG 57.393 50.000 21.34 15.85 34.12 4.18
253 254 1.198408 CCCGATCCAAATGATGCATCG 59.802 52.381 21.34 7.85 36.85 3.84
254 255 2.030540 CACCCGATCCAAATGATGCATC 60.031 50.000 20.14 20.14 32.41 3.91
255 256 1.958579 CACCCGATCCAAATGATGCAT 59.041 47.619 0.00 0.00 32.41 3.96
256 257 1.391577 CACCCGATCCAAATGATGCA 58.608 50.000 0.00 0.00 32.41 3.96
257 258 0.670162 CCACCCGATCCAAATGATGC 59.330 55.000 0.00 0.00 32.41 3.91
258 259 1.949525 GTCCACCCGATCCAAATGATG 59.050 52.381 0.00 0.00 32.41 3.07
259 260 1.846439 AGTCCACCCGATCCAAATGAT 59.154 47.619 0.00 0.00 36.01 2.45
260 261 1.285280 AGTCCACCCGATCCAAATGA 58.715 50.000 0.00 0.00 0.00 2.57
261 262 1.745087 CAAGTCCACCCGATCCAAATG 59.255 52.381 0.00 0.00 0.00 2.32
262 263 1.955208 GCAAGTCCACCCGATCCAAAT 60.955 52.381 0.00 0.00 0.00 2.32
263 264 0.608035 GCAAGTCCACCCGATCCAAA 60.608 55.000 0.00 0.00 0.00 3.28
264 265 1.002624 GCAAGTCCACCCGATCCAA 60.003 57.895 0.00 0.00 0.00 3.53
265 266 1.488705 AAGCAAGTCCACCCGATCCA 61.489 55.000 0.00 0.00 0.00 3.41
298 299 1.263752 GGATCCACTCGCGTAGTACTC 59.736 57.143 6.95 6.02 35.76 2.59
370 521 4.467082 ACTTCTCTCACATTCAGATCTGCT 59.533 41.667 18.36 4.83 0.00 4.24
391 542 5.978814 ACTACATCGAAGAGGCATTAAACT 58.021 37.500 0.00 0.00 45.05 2.66
392 543 6.979238 AGTACTACATCGAAGAGGCATTAAAC 59.021 38.462 0.00 0.00 45.05 2.01
393 544 7.068348 AGAGTACTACATCGAAGAGGCATTAAA 59.932 37.037 0.00 0.00 45.05 1.52
436 592 3.579586 TCCGTACAACCACTGTTCCTAAT 59.420 43.478 0.00 0.00 39.64 1.73
438 594 2.559668 CTCCGTACAACCACTGTTCCTA 59.440 50.000 0.00 0.00 39.64 2.94
532 688 5.588240 TGGCATCTAGTGATTACGTAACAG 58.412 41.667 10.81 3.61 0.00 3.16
536 692 6.216801 ACTTTGGCATCTAGTGATTACGTA 57.783 37.500 0.00 0.00 0.00 3.57
569 725 1.105167 CATCATGGCACCTGGCGATT 61.105 55.000 0.00 0.00 46.16 3.34
619 781 1.602377 GAGCTTTGCCACACTTACGTT 59.398 47.619 0.00 0.00 0.00 3.99
633 795 1.200519 TACTATGCCACCCGAGCTTT 58.799 50.000 0.00 0.00 0.00 3.51
676 838 1.233019 CTATGCTGCACCATGCCTAC 58.767 55.000 3.57 0.00 44.23 3.18
687 849 0.731417 CAAGTCCTGCACTATGCTGC 59.269 55.000 2.02 0.00 45.31 5.25
704 866 2.639065 GAATCGACTGGGTATTGGCAA 58.361 47.619 0.68 0.68 0.00 4.52
758 921 4.538233 CCGCATGTAGGCATCACA 57.462 55.556 0.00 0.00 31.99 3.58
783 946 3.317993 TGATTACGCTAGCTGCACAGATA 59.682 43.478 13.93 0.00 43.06 1.98
916 1087 3.994392 CACAGTACACACACACCTAATCC 59.006 47.826 0.00 0.00 0.00 3.01
928 1099 1.143889 TCAAATGCCCCACAGTACACA 59.856 47.619 0.00 0.00 0.00 3.72
929 1100 1.904287 TCAAATGCCCCACAGTACAC 58.096 50.000 0.00 0.00 0.00 2.90
930 1101 2.040947 TCATCAAATGCCCCACAGTACA 59.959 45.455 0.00 0.00 0.00 2.90
931 1102 2.722094 TCATCAAATGCCCCACAGTAC 58.278 47.619 0.00 0.00 0.00 2.73
938 1109 4.812814 GCGTTCATCAAATGCCCC 57.187 55.556 0.00 0.00 42.96 5.80
963 1134 2.100916 ACGTGCTACTTATAGGCCTGTG 59.899 50.000 17.99 0.00 0.00 3.66
984 1165 1.227943 GTGGTGCTGAGCTTGACCA 60.228 57.895 10.68 10.68 36.10 4.02
996 1177 3.660111 GCCCAACGAGTGTGGTGC 61.660 66.667 0.00 0.00 0.00 5.01
1074 1255 3.387716 CCTCGGTGGTGGACATCA 58.612 61.111 0.00 0.00 0.00 3.07
1561 1816 3.487574 GTCGATCCAGTGATTCGAATGAC 59.512 47.826 18.60 18.60 34.60 3.06
1625 1918 1.593469 CAGAGCATCACGATCAGCAAG 59.407 52.381 0.00 0.00 37.82 4.01
1630 1923 0.749049 CCTCCAGAGCATCACGATCA 59.251 55.000 0.00 0.00 37.82 2.92
1636 1929 1.600638 CAGCACCTCCAGAGCATCA 59.399 57.895 0.00 0.00 37.82 3.07
1746 2056 3.977244 CACGCAGGCCAACAACCC 61.977 66.667 5.01 0.00 0.00 4.11
1796 2137 3.455910 AGCAAATAGAGTATCAGGCCACA 59.544 43.478 5.01 0.00 37.82 4.17
1820 2161 4.083271 GCTAAAGCAACCACGAAAAGAGAT 60.083 41.667 0.00 0.00 41.59 2.75
1823 2164 2.032377 CGCTAAAGCAACCACGAAAAGA 60.032 45.455 2.44 0.00 42.21 2.52
1859 2200 7.252708 CCGACTTTATAAATAAAACCACCACC 58.747 38.462 0.00 0.00 32.39 4.61
1860 2201 7.252708 CCCGACTTTATAAATAAAACCACCAC 58.747 38.462 0.00 0.00 32.39 4.16
1861 2202 6.127675 GCCCGACTTTATAAATAAAACCACCA 60.128 38.462 0.00 0.00 32.39 4.17
1911 2252 6.453396 CGTTACTGATCTAGTTGCGGTTTAAC 60.453 42.308 0.00 0.00 40.89 2.01
1912 2253 5.574055 CGTTACTGATCTAGTTGCGGTTTAA 59.426 40.000 0.00 0.00 40.89 1.52
1938 2279 5.932619 TGCTCCACATACTAGTAACACAT 57.067 39.130 6.70 0.00 0.00 3.21
2075 2573 8.723942 TGGATTGTAATCTAGCTCTCTTTTTC 57.276 34.615 0.00 0.00 35.73 2.29
2081 2579 5.925969 GCTCTTGGATTGTAATCTAGCTCTC 59.074 44.000 0.00 0.00 35.73 3.20
2113 2731 6.150474 ACAAAGGGGTGTATTTTATTGACTCG 59.850 38.462 0.00 0.00 0.00 4.18
2184 2802 6.920758 GGTTAAGTACATGAAACAACAATGCA 59.079 34.615 0.00 0.00 0.00 3.96
2238 2859 6.865834 AGAGTCTGATAAGTGTCCAAAGAT 57.134 37.500 0.00 0.00 0.00 2.40
2267 2888 3.120191 AGGGATCCCTTCCGACCT 58.880 61.111 28.96 2.78 45.70 3.85
2290 2911 2.401766 GCATTGAGGGAGCACACCG 61.402 63.158 0.00 0.00 0.00 4.94
2465 3086 3.001330 CGCCGGAGAAGAAATAACATGTC 59.999 47.826 5.05 0.00 0.00 3.06
2468 3089 2.561569 CCGCCGGAGAAGAAATAACAT 58.438 47.619 5.05 0.00 0.00 2.71
2721 3342 8.991783 ATATTCTTGTTGATGTCATCCTCATT 57.008 30.769 10.36 0.02 0.00 2.57
2744 3374 2.014335 TTGACGACGACTCCTCGATA 57.986 50.000 0.00 0.00 43.06 2.92
3435 4088 2.413310 TTACAAATTCTCCCTCGCCC 57.587 50.000 0.00 0.00 0.00 6.13
3455 7239 8.177456 AGTTTCCTCTTGTAATTTCCCCTTTAT 58.823 33.333 0.00 0.00 0.00 1.40
3601 7393 6.226787 AGTATATCCACTAGCAGATGCAAAC 58.773 40.000 7.68 0.00 45.16 2.93
3670 7462 1.539827 GCGGGCACACAAAAGTAGAAT 59.460 47.619 0.00 0.00 0.00 2.40
3673 7465 0.040425 GTGCGGGCACACAAAAGTAG 60.040 55.000 18.27 0.00 45.53 2.57
3719 7511 2.443632 TGTGGGGTGATGTTAGGACAAA 59.556 45.455 0.00 0.00 39.66 2.83
3720 7512 2.058705 TGTGGGGTGATGTTAGGACAA 58.941 47.619 0.00 0.00 39.66 3.18
3742 7534 5.221165 GCTAGCCTTTTCCAACAACAAACTA 60.221 40.000 2.29 0.00 0.00 2.24
3786 7578 9.974750 GATTTTACTCTTGAACTGCTATGTTAC 57.025 33.333 0.00 0.00 0.00 2.50
3794 7586 6.831769 TCGAATGATTTTACTCTTGAACTGC 58.168 36.000 0.00 0.00 0.00 4.40
3888 7680 2.286294 GCATAGACAAGTGAAGGCATCG 59.714 50.000 0.00 0.00 0.00 3.84
3931 7723 9.527157 TCCTTTGGTTAATTGATAACATCTTGA 57.473 29.630 1.32 0.00 44.77 3.02
4014 7806 4.644234 TGAAGTGTGAGGCAAATTCAAGAA 59.356 37.500 0.00 0.00 34.27 2.52
4015 7807 4.206375 TGAAGTGTGAGGCAAATTCAAGA 58.794 39.130 0.00 0.00 34.27 3.02
4042 7834 7.410174 ACTCCATTCCAACAACCTATTTCATA 58.590 34.615 0.00 0.00 0.00 2.15
4047 7839 7.213178 AGATACTCCATTCCAACAACCTATT 57.787 36.000 0.00 0.00 0.00 1.73
4054 7846 7.054124 GGACATAAAGATACTCCATTCCAACA 58.946 38.462 0.00 0.00 0.00 3.33
4059 7851 8.097662 CCTTAGGGACATAAAGATACTCCATTC 58.902 40.741 0.00 0.00 33.58 2.67
4093 7885 8.032045 TCGTCCCAATACCCTAATATGTTAAA 57.968 34.615 0.00 0.00 0.00 1.52
4101 7893 4.658901 AGAACATCGTCCCAATACCCTAAT 59.341 41.667 0.00 0.00 0.00 1.73
4104 7896 2.478292 AGAACATCGTCCCAATACCCT 58.522 47.619 0.00 0.00 0.00 4.34
4128 7920 3.305720 AGATCCCTTTGATAGTACGGCA 58.694 45.455 0.00 0.00 32.41 5.69
4132 7924 6.056236 GGTTTGGAGATCCCTTTGATAGTAC 58.944 44.000 0.00 0.00 32.41 2.73
4150 7942 6.534793 GTCCAAATAATATGTTGCTGGTTTGG 59.465 38.462 7.11 7.11 43.38 3.28
4227 8019 6.317893 ACTCTCGTAGGTTTGTCATTGTTTTT 59.682 34.615 0.00 0.00 0.00 1.94
4241 8033 1.254954 GTCCCAACACTCTCGTAGGT 58.745 55.000 0.00 0.00 0.00 3.08
4242 8034 0.170561 CGTCCCAACACTCTCGTAGG 59.829 60.000 0.00 0.00 0.00 3.18
4243 8035 0.879765 ACGTCCCAACACTCTCGTAG 59.120 55.000 0.00 0.00 0.00 3.51
4244 8036 2.079158 CTACGTCCCAACACTCTCGTA 58.921 52.381 0.00 0.00 33.70 3.43
4245 8037 0.879765 CTACGTCCCAACACTCTCGT 59.120 55.000 0.00 0.00 35.73 4.18
4247 8039 2.422832 CCTACTACGTCCCAACACTCTC 59.577 54.545 0.00 0.00 0.00 3.20
4261 8054 4.738685 AGATGCCCTTAGGTACCTACTAC 58.261 47.826 21.65 11.55 34.57 2.73
4298 8091 4.106341 GGGGAGAAGATGGGGATTAATTCA 59.894 45.833 0.00 0.00 0.00 2.57
4299 8092 4.509302 GGGGGAGAAGATGGGGATTAATTC 60.509 50.000 0.00 0.00 0.00 2.17
4303 8096 1.299942 TGGGGGAGAAGATGGGGATTA 59.700 52.381 0.00 0.00 0.00 1.75
4316 8109 4.592997 AACTTTTTAGAGGATGGGGGAG 57.407 45.455 0.00 0.00 0.00 4.30
4318 8111 7.733773 AAAATAACTTTTTAGAGGATGGGGG 57.266 36.000 0.00 0.00 30.29 5.40
4355 8148 7.751646 TGGGAGAATCTGGTAACTAAGAAAAA 58.248 34.615 0.00 0.00 33.73 1.94
4364 8157 3.686016 TGCTTTGGGAGAATCTGGTAAC 58.314 45.455 0.00 0.00 33.73 2.50
4369 8162 1.830279 TGCTGCTTTGGGAGAATCTG 58.170 50.000 0.00 0.00 32.36 2.90
4375 8168 1.888018 CCACATGCTGCTTTGGGAG 59.112 57.895 0.00 0.00 0.00 4.30
4409 8202 1.880796 CAGACAACACACGGACGCA 60.881 57.895 0.00 0.00 0.00 5.24
4410 8203 1.818221 GACAGACAACACACGGACGC 61.818 60.000 0.00 0.00 0.00 5.19
4415 8208 0.930310 CAGTGGACAGACAACACACG 59.070 55.000 0.00 0.00 37.58 4.49
4416 8209 1.933853 GTCAGTGGACAGACAACACAC 59.066 52.381 0.00 0.00 43.73 3.82
4418 8211 1.202371 TCGTCAGTGGACAGACAACAC 60.202 52.381 3.59 0.00 44.54 3.32
4420 8213 1.772182 CTCGTCAGTGGACAGACAAC 58.228 55.000 3.59 0.00 44.54 3.32
4422 8215 1.660355 GCTCGTCAGTGGACAGACA 59.340 57.895 3.59 0.00 44.54 3.41
4423 8216 1.080434 GGCTCGTCAGTGGACAGAC 60.080 63.158 0.00 0.00 44.54 3.51
4424 8217 1.530655 TGGCTCGTCAGTGGACAGA 60.531 57.895 0.00 0.00 44.54 3.41
4425 8218 1.373497 GTGGCTCGTCAGTGGACAG 60.373 63.158 0.00 0.00 44.54 3.51
4441 8570 2.215907 CTTGGATACGAGCCAGAGTG 57.784 55.000 0.00 0.00 42.41 3.51
4470 8599 0.798771 GCACGTGGAGAGATGTCGAC 60.799 60.000 18.88 9.11 0.00 4.20
4471 8600 0.960861 AGCACGTGGAGAGATGTCGA 60.961 55.000 18.88 0.00 0.00 4.20
4489 8618 1.722677 GTCGAGGACCAGCGAGTAG 59.277 63.158 9.40 0.00 37.18 2.57
4499 8628 2.402787 GCCGTAGACGTCGAGGAC 59.597 66.667 24.21 14.36 37.74 3.85
4504 8633 4.547905 ATGGCGCCGTAGACGTCG 62.548 66.667 22.45 0.54 43.94 5.12
4507 8636 2.655364 CAGATGGCGCCGTAGACG 60.655 66.667 23.94 6.41 39.44 4.18
4522 8651 1.202770 TGATGCATGAGGATGGAGCAG 60.203 52.381 2.46 0.00 40.89 4.24
4576 8705 1.307355 TGGACTTGACGACGGCGATA 61.307 55.000 22.49 1.39 41.64 2.92
4592 8721 0.687427 TCAGGCATGTCGGAGATGGA 60.687 55.000 15.88 3.37 40.67 3.41
4596 8725 1.977009 ACGTCAGGCATGTCGGAGA 60.977 57.895 20.82 0.00 41.42 3.71
4597 8726 1.807165 CACGTCAGGCATGTCGGAG 60.807 63.158 20.82 10.04 41.42 4.63
4640 8769 2.335011 GCAAACACAAGACCCGGC 59.665 61.111 0.00 0.00 0.00 6.13
4657 8786 2.181021 GAGTAGGTCGTGCCACCG 59.819 66.667 0.00 0.00 41.90 4.94
4668 8797 2.042843 AGTGGGCGAGGGAGTAGG 60.043 66.667 0.00 0.00 0.00 3.18
4690 8819 2.356780 GGTGGGTGTAGGGACGAGG 61.357 68.421 0.00 0.00 0.00 4.63
4696 8825 0.991920 ATGTTCTGGTGGGTGTAGGG 59.008 55.000 0.00 0.00 0.00 3.53
4714 8843 1.549203 GTGTGAACCATCCAGGCAAT 58.451 50.000 0.00 0.00 43.14 3.56
4750 8879 1.898574 CCACCTGCCAAAAGTCGCT 60.899 57.895 0.00 0.00 0.00 4.93
4779 8908 3.079417 CTCTTGAGCGCTGCGAAG 58.921 61.111 28.07 19.76 0.00 3.79
4788 8917 2.743928 CACCACCGGCTCTTGAGC 60.744 66.667 13.69 13.69 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.