Multiple sequence alignment - TraesCS2D01G483000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G483000 chr2D 100.000 3479 0 0 1 3479 584896154 584899632 0.000000e+00 6425.0
1 TraesCS2D01G483000 chr2D 84.211 266 29 9 778 1033 584896178 584896440 2.680000e-61 246.0
2 TraesCS2D01G483000 chr2D 84.211 266 29 9 25 287 584896931 584897186 2.680000e-61 246.0
3 TraesCS2D01G483000 chr2B 94.771 1874 73 7 748 2608 705529795 705531656 0.000000e+00 2894.0
4 TraesCS2D01G483000 chr2B 93.270 1590 91 7 942 2523 705328241 705326660 0.000000e+00 2329.0
5 TraesCS2D01G483000 chr2B 92.183 678 42 6 2698 3370 705532154 705532825 0.000000e+00 948.0
6 TraesCS2D01G483000 chr2B 92.414 290 15 3 1 289 705528409 705528692 1.160000e-109 407.0
7 TraesCS2D01G483000 chr2B 83.396 265 32 9 25 287 705529825 705530079 5.810000e-58 235.0
8 TraesCS2D01G483000 chr2A 90.205 1807 134 22 778 2557 719204334 719206124 0.000000e+00 2316.0
9 TraesCS2D01G483000 chr2A 91.071 280 17 3 1 280 719204311 719204582 4.240000e-99 372.0
10 TraesCS2D01G483000 chr2A 92.135 89 7 0 288 376 618975121 618975033 3.650000e-25 126.0
11 TraesCS2D01G483000 chr5A 82.814 1443 233 8 1056 2491 299254551 299253117 0.000000e+00 1277.0
12 TraesCS2D01G483000 chr5A 91.954 87 7 0 292 378 299765635 299765721 4.720000e-24 122.0
13 TraesCS2D01G483000 chr5D 82.756 1444 232 11 1056 2491 224761710 224760276 0.000000e+00 1271.0
14 TraesCS2D01G483000 chr5D 95.294 85 4 0 292 376 438950116 438950200 6.060000e-28 135.0
15 TraesCS2D01G483000 chr5B 82.873 1232 202 5 1056 2281 246951479 246952707 0.000000e+00 1098.0
16 TraesCS2D01G483000 chr6D 82.558 172 15 11 3312 3475 8841407 8841243 1.680000e-28 137.0
17 TraesCS2D01G483000 chr6D 91.398 93 6 2 288 379 437180641 437180550 3.650000e-25 126.0
18 TraesCS2D01G483000 chr7D 94.186 86 5 0 291 376 615461466 615461381 7.840000e-27 132.0
19 TraesCS2D01G483000 chr7D 86.916 107 11 3 285 390 287721280 287721384 2.190000e-22 117.0
20 TraesCS2D01G483000 chr3D 80.108 186 24 11 3297 3476 557521725 557521547 3.650000e-25 126.0
21 TraesCS2D01G483000 chr3D 78.191 188 24 12 3296 3476 557497610 557497433 1.710000e-18 104.0
22 TraesCS2D01G483000 chr1D 91.304 92 8 0 285 376 11973554 11973463 3.650000e-25 126.0
23 TraesCS2D01G483000 chr1A 92.135 89 6 1 288 376 561977553 561977640 1.310000e-24 124.0
24 TraesCS2D01G483000 chr3A 91.111 90 8 0 288 377 683539910 683539999 4.720000e-24 122.0
25 TraesCS2D01G483000 chr3A 78.075 187 25 11 3297 3476 693205495 693205318 1.710000e-18 104.0
26 TraesCS2D01G483000 chr4A 80.247 162 24 7 2111 2268 456475119 456475276 7.890000e-22 115.0
27 TraesCS2D01G483000 chr4D 79.630 162 25 7 2111 2268 14830557 14830400 3.670000e-20 110.0
28 TraesCS2D01G483000 chr4B 79.630 162 25 7 2111 2268 24664550 24664393 3.670000e-20 110.0
29 TraesCS2D01G483000 chr3B 78.571 182 26 11 3300 3475 739653900 739653726 1.320000e-19 108.0
30 TraesCS2D01G483000 chr3B 80.667 150 18 11 3308 3450 739599177 739599032 4.750000e-19 106.0
31 TraesCS2D01G483000 chr7A 73.978 269 40 18 3228 3479 690418756 690419011 8.000000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G483000 chr2D 584896154 584899632 3478 False 2305.666667 6425 89.474 1 3479 3 chr2D.!!$F1 3478
1 TraesCS2D01G483000 chr2B 705326660 705328241 1581 True 2329.000000 2329 93.270 942 2523 1 chr2B.!!$R1 1581
2 TraesCS2D01G483000 chr2B 705528409 705532825 4416 False 1121.000000 2894 90.691 1 3370 4 chr2B.!!$F1 3369
3 TraesCS2D01G483000 chr2A 719204311 719206124 1813 False 1344.000000 2316 90.638 1 2557 2 chr2A.!!$F1 2556
4 TraesCS2D01G483000 chr5A 299253117 299254551 1434 True 1277.000000 1277 82.814 1056 2491 1 chr5A.!!$R1 1435
5 TraesCS2D01G483000 chr5D 224760276 224761710 1434 True 1271.000000 1271 82.756 1056 2491 1 chr5D.!!$R1 1435
6 TraesCS2D01G483000 chr5B 246951479 246952707 1228 False 1098.000000 1098 82.873 1056 2281 1 chr5B.!!$F1 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 562 0.035881 CATCCCAGTCACAGTGCAGT 59.964 55.0 0.0 0.0 0.00 4.40 F
665 685 0.036010 CTCATGGTTGAGCGGGAGTT 60.036 55.0 0.0 0.0 42.79 3.01 F
668 688 0.110486 ATGGTTGAGCGGGAGTTTGT 59.890 50.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 3078 1.145598 ATGACCCATGAGCAGCTCG 59.854 57.895 17.81 5.73 32.35 5.03 R
2379 3132 1.424493 GCGTCATCCCTTTCAGAGCG 61.424 60.000 0.00 0.00 0.00 5.03 R
2631 3690 2.089201 TCTTCACGTAAGATCCTGCGA 58.911 47.619 8.88 0.00 39.36 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.651240 GCCGACGTCACCTGTAGCTA 61.651 60.000 17.16 0.00 0.00 3.32
180 182 4.706476 CACAATGGCACCAATATATAGGGG 59.294 45.833 0.00 4.94 0.00 4.79
181 183 4.264352 ACAATGGCACCAATATATAGGGGG 60.264 45.833 0.00 5.10 0.00 5.40
182 184 3.299591 TGGCACCAATATATAGGGGGA 57.700 47.619 9.27 0.00 0.00 4.81
183 185 3.614662 TGGCACCAATATATAGGGGGAA 58.385 45.455 9.27 0.00 0.00 3.97
203 205 1.536766 ACGCATCACAGGTTTCACATG 59.463 47.619 0.00 0.00 35.77 3.21
216 218 3.473923 TTCACATGAGAAGCAGACACA 57.526 42.857 0.00 0.00 0.00 3.72
244 246 9.136952 CTTCATTTCACATCAAAATTTCTCCTC 57.863 33.333 0.00 0.00 0.00 3.71
246 248 8.517878 TCATTTCACATCAAAATTTCTCCTCTC 58.482 33.333 0.00 0.00 0.00 3.20
247 249 8.521176 CATTTCACATCAAAATTTCTCCTCTCT 58.479 33.333 0.00 0.00 0.00 3.10
258 260 3.168035 TCTCCTCTCTCTATCCATGGC 57.832 52.381 6.96 0.00 0.00 4.40
289 291 0.886490 AGCACCAGCAACACAGCTAC 60.886 55.000 0.00 0.00 44.54 3.58
291 293 0.880278 CACCAGCAACACAGCTACGT 60.880 55.000 0.00 0.00 44.54 3.57
292 294 0.677288 ACCAGCAACACAGCTACGTA 59.323 50.000 0.00 0.00 44.54 3.57
293 295 1.068474 CCAGCAACACAGCTACGTAC 58.932 55.000 0.00 0.00 44.54 3.67
294 296 1.336887 CCAGCAACACAGCTACGTACT 60.337 52.381 0.00 0.00 44.54 2.73
295 297 1.986378 CAGCAACACAGCTACGTACTC 59.014 52.381 0.00 0.00 44.54 2.59
296 298 1.887198 AGCAACACAGCTACGTACTCT 59.113 47.619 0.00 0.00 44.50 3.24
297 299 2.095161 AGCAACACAGCTACGTACTCTC 60.095 50.000 0.00 0.00 44.50 3.20
298 300 2.095161 GCAACACAGCTACGTACTCTCT 60.095 50.000 0.00 0.00 0.00 3.10
299 301 3.749404 CAACACAGCTACGTACTCTCTC 58.251 50.000 0.00 0.00 0.00 3.20
300 302 2.358015 ACACAGCTACGTACTCTCTCC 58.642 52.381 0.00 0.00 0.00 3.71
301 303 1.328069 CACAGCTACGTACTCTCTCCG 59.672 57.143 0.00 0.00 0.00 4.63
302 304 0.305313 CAGCTACGTACTCTCTCCGC 59.695 60.000 0.00 0.00 0.00 5.54
303 305 0.107800 AGCTACGTACTCTCTCCGCA 60.108 55.000 0.00 0.00 0.00 5.69
304 306 0.731417 GCTACGTACTCTCTCCGCAA 59.269 55.000 0.00 0.00 0.00 4.85
305 307 1.131883 GCTACGTACTCTCTCCGCAAA 59.868 52.381 0.00 0.00 0.00 3.68
306 308 2.783333 CTACGTACTCTCTCCGCAAAC 58.217 52.381 0.00 0.00 0.00 2.93
307 309 1.245732 ACGTACTCTCTCCGCAAACT 58.754 50.000 0.00 0.00 0.00 2.66
308 310 2.430465 ACGTACTCTCTCCGCAAACTA 58.570 47.619 0.00 0.00 0.00 2.24
309 311 2.816087 ACGTACTCTCTCCGCAAACTAA 59.184 45.455 0.00 0.00 0.00 2.24
310 312 3.442977 ACGTACTCTCTCCGCAAACTAAT 59.557 43.478 0.00 0.00 0.00 1.73
311 313 4.637534 ACGTACTCTCTCCGCAAACTAATA 59.362 41.667 0.00 0.00 0.00 0.98
312 314 5.298777 ACGTACTCTCTCCGCAAACTAATAT 59.701 40.000 0.00 0.00 0.00 1.28
313 315 6.484643 ACGTACTCTCTCCGCAAACTAATATA 59.515 38.462 0.00 0.00 0.00 0.86
314 316 7.012704 ACGTACTCTCTCCGCAAACTAATATAA 59.987 37.037 0.00 0.00 0.00 0.98
315 317 7.859377 CGTACTCTCTCCGCAAACTAATATAAA 59.141 37.037 0.00 0.00 0.00 1.40
316 318 9.525409 GTACTCTCTCCGCAAACTAATATAAAA 57.475 33.333 0.00 0.00 0.00 1.52
317 319 8.649973 ACTCTCTCCGCAAACTAATATAAAAG 57.350 34.615 0.00 0.00 0.00 2.27
318 320 7.224949 ACTCTCTCCGCAAACTAATATAAAAGC 59.775 37.037 0.00 0.00 0.00 3.51
319 321 6.200286 TCTCTCCGCAAACTAATATAAAAGCG 59.800 38.462 0.00 0.00 43.13 4.68
320 322 5.813672 TCTCCGCAAACTAATATAAAAGCGT 59.186 36.000 0.00 0.00 42.08 5.07
321 323 6.314400 TCTCCGCAAACTAATATAAAAGCGTT 59.686 34.615 0.00 0.00 42.08 4.84
322 324 6.844254 TCCGCAAACTAATATAAAAGCGTTT 58.156 32.000 2.53 2.53 42.08 3.60
323 325 7.972527 TCCGCAAACTAATATAAAAGCGTTTA 58.027 30.769 7.30 7.30 42.08 2.01
324 326 8.117988 TCCGCAAACTAATATAAAAGCGTTTAG 58.882 33.333 10.55 1.25 42.08 1.85
325 327 8.117988 CCGCAAACTAATATAAAAGCGTTTAGA 58.882 33.333 10.55 6.46 42.08 2.10
326 328 9.646336 CGCAAACTAATATAAAAGCGTTTAGAT 57.354 29.630 10.55 8.48 39.18 1.98
340 342 9.918630 AAAGCGTTTAGATTAGTAAAGTAGTGA 57.081 29.630 0.00 0.00 0.00 3.41
342 344 9.733219 AGCGTTTAGATTAGTAAAGTAGTGATC 57.267 33.333 0.00 0.00 0.00 2.92
343 345 9.733219 GCGTTTAGATTAGTAAAGTAGTGATCT 57.267 33.333 0.00 3.68 37.90 2.75
349 351 9.733219 AGATTAGTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 34.01 4.84
350 352 9.733219 GATTAGTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 0.00 5.07
352 354 9.918630 TTAGTAAAGTAGTGATCTAAACGCTTT 57.081 29.630 0.00 3.97 34.49 3.51
353 355 8.828688 AGTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 33.26 2.27
354 356 9.918630 AGTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 33.26 1.52
372 374 9.841295 ACGCTTTTATATTAATTTACAGAGGGA 57.159 29.630 0.00 0.00 0.00 4.20
421 440 4.386711 ACTCAAAGTACAAGTGGGCTTAC 58.613 43.478 0.00 0.00 32.87 2.34
434 454 1.339727 GGGCTTACAACCAGGACGAAT 60.340 52.381 0.00 0.00 0.00 3.34
437 457 3.592059 GCTTACAACCAGGACGAATGTA 58.408 45.455 0.00 0.00 0.00 2.29
438 458 3.617263 GCTTACAACCAGGACGAATGTAG 59.383 47.826 0.00 0.00 0.00 2.74
440 460 5.622914 GCTTACAACCAGGACGAATGTAGTA 60.623 44.000 0.00 0.00 0.00 1.82
441 461 6.534475 TTACAACCAGGACGAATGTAGTAT 57.466 37.500 0.00 0.00 0.00 2.12
442 462 5.416271 ACAACCAGGACGAATGTAGTATT 57.584 39.130 0.00 0.00 0.00 1.89
443 463 5.175859 ACAACCAGGACGAATGTAGTATTG 58.824 41.667 0.00 0.00 0.00 1.90
444 464 5.175859 CAACCAGGACGAATGTAGTATTGT 58.824 41.667 0.00 0.00 0.00 2.71
445 465 5.416271 ACCAGGACGAATGTAGTATTGTT 57.584 39.130 0.00 0.00 0.00 2.83
446 466 5.416947 ACCAGGACGAATGTAGTATTGTTC 58.583 41.667 0.00 0.00 0.00 3.18
447 467 5.187186 ACCAGGACGAATGTAGTATTGTTCT 59.813 40.000 0.00 0.00 0.00 3.01
448 468 6.379133 ACCAGGACGAATGTAGTATTGTTCTA 59.621 38.462 0.00 0.00 0.00 2.10
449 469 7.069578 ACCAGGACGAATGTAGTATTGTTCTAT 59.930 37.037 0.00 0.00 0.00 1.98
450 470 7.926555 CCAGGACGAATGTAGTATTGTTCTATT 59.073 37.037 0.00 0.00 0.00 1.73
451 471 8.755941 CAGGACGAATGTAGTATTGTTCTATTG 58.244 37.037 0.00 0.00 0.00 1.90
452 472 7.438459 AGGACGAATGTAGTATTGTTCTATTGC 59.562 37.037 0.00 0.00 0.00 3.56
453 473 7.223971 GGACGAATGTAGTATTGTTCTATTGCA 59.776 37.037 0.00 0.00 0.00 4.08
454 474 8.487313 ACGAATGTAGTATTGTTCTATTGCAA 57.513 30.769 0.00 0.00 0.00 4.08
455 475 8.388103 ACGAATGTAGTATTGTTCTATTGCAAC 58.612 33.333 0.00 0.00 0.00 4.17
456 476 7.579093 CGAATGTAGTATTGTTCTATTGCAACG 59.421 37.037 0.00 0.00 0.00 4.10
457 477 8.487313 AATGTAGTATTGTTCTATTGCAACGA 57.513 30.769 0.00 0.00 0.00 3.85
458 478 8.662781 ATGTAGTATTGTTCTATTGCAACGAT 57.337 30.769 0.00 0.00 33.27 3.73
459 479 7.905126 TGTAGTATTGTTCTATTGCAACGATG 58.095 34.615 0.00 0.00 31.46 3.84
470 490 1.503542 CAACGATGCACTCCAAGCC 59.496 57.895 0.00 0.00 0.00 4.35
471 491 1.073025 AACGATGCACTCCAAGCCA 59.927 52.632 0.00 0.00 0.00 4.75
472 492 0.537143 AACGATGCACTCCAAGCCAA 60.537 50.000 0.00 0.00 0.00 4.52
473 493 0.957395 ACGATGCACTCCAAGCCAAG 60.957 55.000 0.00 0.00 0.00 3.61
475 495 1.093159 GATGCACTCCAAGCCAAGAG 58.907 55.000 0.00 0.00 36.16 2.85
477 497 0.694771 TGCACTCCAAGCCAAGAGAT 59.305 50.000 1.80 0.00 34.13 2.75
479 499 2.284190 GCACTCCAAGCCAAGAGATAC 58.716 52.381 1.80 0.00 34.13 2.24
480 500 2.355108 GCACTCCAAGCCAAGAGATACA 60.355 50.000 1.80 0.00 34.13 2.29
483 503 2.877168 CTCCAAGCCAAGAGATACATGC 59.123 50.000 0.00 0.00 31.43 4.06
484 504 2.239402 TCCAAGCCAAGAGATACATGCA 59.761 45.455 0.00 0.00 0.00 3.96
485 505 3.018856 CCAAGCCAAGAGATACATGCAA 58.981 45.455 0.00 0.00 0.00 4.08
486 506 3.635373 CCAAGCCAAGAGATACATGCAAT 59.365 43.478 0.00 0.00 0.00 3.56
488 508 5.278169 CCAAGCCAAGAGATACATGCAATAC 60.278 44.000 0.00 0.00 0.00 1.89
489 509 5.301835 AGCCAAGAGATACATGCAATACT 57.698 39.130 0.00 0.00 0.00 2.12
490 510 5.061853 AGCCAAGAGATACATGCAATACTG 58.938 41.667 0.00 0.00 0.00 2.74
491 511 4.214971 GCCAAGAGATACATGCAATACTGG 59.785 45.833 0.00 0.00 0.00 4.00
492 512 4.758674 CCAAGAGATACATGCAATACTGGG 59.241 45.833 0.00 0.00 0.00 4.45
494 514 5.480642 AGAGATACATGCAATACTGGGAG 57.519 43.478 0.00 0.00 0.00 4.30
495 515 4.285517 AGAGATACATGCAATACTGGGAGG 59.714 45.833 0.00 0.00 0.00 4.30
496 516 3.328931 AGATACATGCAATACTGGGAGGG 59.671 47.826 0.00 0.00 0.00 4.30
497 517 1.595311 ACATGCAATACTGGGAGGGA 58.405 50.000 0.00 0.00 0.00 4.20
499 519 2.158564 ACATGCAATACTGGGAGGGATG 60.159 50.000 0.00 0.00 34.09 3.51
500 520 1.595311 TGCAATACTGGGAGGGATGT 58.405 50.000 0.00 0.00 0.00 3.06
501 521 1.490490 TGCAATACTGGGAGGGATGTC 59.510 52.381 0.00 0.00 0.00 3.06
502 522 1.771255 GCAATACTGGGAGGGATGTCT 59.229 52.381 0.00 0.00 0.00 3.41
503 523 2.224402 GCAATACTGGGAGGGATGTCTC 60.224 54.545 0.00 0.00 0.00 3.36
504 524 3.312890 CAATACTGGGAGGGATGTCTCT 58.687 50.000 0.00 0.00 34.39 3.10
505 525 2.461300 TACTGGGAGGGATGTCTCTG 57.539 55.000 0.00 0.00 34.39 3.35
507 527 1.118838 CTGGGAGGGATGTCTCTGTC 58.881 60.000 0.00 0.00 34.39 3.51
508 528 0.712979 TGGGAGGGATGTCTCTGTCT 59.287 55.000 0.00 0.00 34.39 3.41
509 529 1.342474 TGGGAGGGATGTCTCTGTCTC 60.342 57.143 0.00 0.00 34.39 3.36
510 530 1.063266 GGGAGGGATGTCTCTGTCTCT 60.063 57.143 0.00 0.00 34.39 3.10
512 532 2.306847 GAGGGATGTCTCTGTCTCTCC 58.693 57.143 0.00 0.00 36.23 3.71
516 536 3.181467 GGGATGTCTCTGTCTCTCCAATG 60.181 52.174 0.00 0.00 0.00 2.82
517 537 3.703556 GGATGTCTCTGTCTCTCCAATGA 59.296 47.826 0.00 0.00 0.00 2.57
518 538 4.344679 GGATGTCTCTGTCTCTCCAATGAT 59.655 45.833 0.00 0.00 0.00 2.45
519 539 4.998671 TGTCTCTGTCTCTCCAATGATC 57.001 45.455 0.00 0.00 0.00 2.92
520 540 4.608269 TGTCTCTGTCTCTCCAATGATCT 58.392 43.478 0.00 0.00 0.00 2.75
521 541 5.760131 TGTCTCTGTCTCTCCAATGATCTA 58.240 41.667 0.00 0.00 0.00 1.98
523 543 6.489700 TGTCTCTGTCTCTCCAATGATCTATC 59.510 42.308 0.00 0.00 0.00 2.08
524 544 6.489700 GTCTCTGTCTCTCCAATGATCTATCA 59.510 42.308 0.00 0.00 41.70 2.15
526 546 7.394077 TCTCTGTCTCTCCAATGATCTATCATC 59.606 40.741 5.94 0.00 46.22 2.92
527 547 6.436847 TCTGTCTCTCCAATGATCTATCATCC 59.563 42.308 5.94 0.00 46.22 3.51
528 548 5.483231 TGTCTCTCCAATGATCTATCATCCC 59.517 44.000 5.94 0.00 46.22 3.85
529 549 5.483231 GTCTCTCCAATGATCTATCATCCCA 59.517 44.000 5.94 0.00 46.22 4.37
530 550 5.720520 TCTCTCCAATGATCTATCATCCCAG 59.279 44.000 5.94 3.19 46.22 4.45
532 552 5.483231 TCTCCAATGATCTATCATCCCAGTC 59.517 44.000 5.94 0.00 46.22 3.51
534 554 5.012458 TCCAATGATCTATCATCCCAGTCAC 59.988 44.000 5.94 0.00 46.22 3.67
535 555 5.221783 CCAATGATCTATCATCCCAGTCACA 60.222 44.000 5.94 0.00 46.22 3.58
536 556 5.741962 ATGATCTATCATCCCAGTCACAG 57.258 43.478 0.00 0.00 43.72 3.66
538 558 4.343239 TGATCTATCATCCCAGTCACAGTG 59.657 45.833 0.00 0.00 0.00 3.66
539 559 2.432146 TCTATCATCCCAGTCACAGTGC 59.568 50.000 0.00 0.00 0.00 4.40
541 561 0.322648 TCATCCCAGTCACAGTGCAG 59.677 55.000 0.00 0.00 0.00 4.41
542 562 0.035881 CATCCCAGTCACAGTGCAGT 59.964 55.000 0.00 0.00 0.00 4.40
543 563 0.322975 ATCCCAGTCACAGTGCAGTC 59.677 55.000 0.00 0.00 0.00 3.51
544 564 1.048160 TCCCAGTCACAGTGCAGTCA 61.048 55.000 0.00 0.00 0.00 3.41
546 566 1.667236 CCAGTCACAGTGCAGTCAAA 58.333 50.000 0.00 0.00 0.00 2.69
547 567 2.224606 CCAGTCACAGTGCAGTCAAAT 58.775 47.619 0.00 0.00 0.00 2.32
549 569 3.304257 CCAGTCACAGTGCAGTCAAATTC 60.304 47.826 0.00 0.00 0.00 2.17
550 570 3.562973 CAGTCACAGTGCAGTCAAATTCT 59.437 43.478 0.00 0.00 0.00 2.40
552 572 4.641989 AGTCACAGTGCAGTCAAATTCTTT 59.358 37.500 0.00 0.00 0.00 2.52
553 573 4.736793 GTCACAGTGCAGTCAAATTCTTTG 59.263 41.667 0.00 0.00 41.96 2.77
554 574 4.046462 CACAGTGCAGTCAAATTCTTTGG 58.954 43.478 0.00 0.00 40.98 3.28
555 575 3.068590 ACAGTGCAGTCAAATTCTTTGGG 59.931 43.478 0.00 0.00 40.98 4.12
557 577 3.571401 AGTGCAGTCAAATTCTTTGGGAG 59.429 43.478 0.00 0.00 40.98 4.30
558 578 2.297033 TGCAGTCAAATTCTTTGGGAGC 59.703 45.455 0.19 3.06 40.98 4.70
559 579 2.560105 GCAGTCAAATTCTTTGGGAGCT 59.440 45.455 0.00 0.00 40.98 4.09
561 581 4.502087 GCAGTCAAATTCTTTGGGAGCTTT 60.502 41.667 0.00 0.00 40.98 3.51
562 582 5.278957 GCAGTCAAATTCTTTGGGAGCTTTA 60.279 40.000 0.00 0.00 40.98 1.85
563 583 6.738453 GCAGTCAAATTCTTTGGGAGCTTTAA 60.738 38.462 0.00 0.00 40.98 1.52
564 584 7.381323 CAGTCAAATTCTTTGGGAGCTTTAAT 58.619 34.615 0.00 0.00 40.98 1.40
565 585 7.874528 CAGTCAAATTCTTTGGGAGCTTTAATT 59.125 33.333 0.00 0.00 40.98 1.40
566 586 8.432013 AGTCAAATTCTTTGGGAGCTTTAATTT 58.568 29.630 0.00 0.00 40.98 1.82
572 592 7.100458 TCTTTGGGAGCTTTAATTTATCTGC 57.900 36.000 0.00 0.00 0.00 4.26
577 597 6.891908 TGGGAGCTTTAATTTATCTGCTCTTT 59.108 34.615 17.37 0.00 44.20 2.52
578 598 7.067494 TGGGAGCTTTAATTTATCTGCTCTTTC 59.933 37.037 17.37 11.76 44.20 2.62
579 599 7.284261 GGGAGCTTTAATTTATCTGCTCTTTCT 59.716 37.037 17.37 0.00 44.20 2.52
580 600 8.341903 GGAGCTTTAATTTATCTGCTCTTTCTC 58.658 37.037 17.37 0.00 44.20 2.87
581 601 9.108284 GAGCTTTAATTTATCTGCTCTTTCTCT 57.892 33.333 13.69 0.00 42.28 3.10
582 602 9.460019 AGCTTTAATTTATCTGCTCTTTCTCTT 57.540 29.630 0.00 0.00 0.00 2.85
589 609 8.545229 TTTATCTGCTCTTTCTCTTTCTCAAG 57.455 34.615 0.00 0.00 0.00 3.02
590 610 4.892433 TCTGCTCTTTCTCTTTCTCAAGG 58.108 43.478 0.00 0.00 0.00 3.61
591 611 4.346418 TCTGCTCTTTCTCTTTCTCAAGGT 59.654 41.667 0.00 0.00 0.00 3.50
592 612 4.636249 TGCTCTTTCTCTTTCTCAAGGTC 58.364 43.478 0.00 0.00 0.00 3.85
593 613 4.101585 TGCTCTTTCTCTTTCTCAAGGTCA 59.898 41.667 0.00 0.00 0.00 4.02
594 614 4.450757 GCTCTTTCTCTTTCTCAAGGTCAC 59.549 45.833 0.00 0.00 0.00 3.67
595 615 5.605534 CTCTTTCTCTTTCTCAAGGTCACA 58.394 41.667 0.00 0.00 0.00 3.58
597 617 6.051717 TCTTTCTCTTTCTCAAGGTCACAAG 58.948 40.000 0.00 0.00 0.00 3.16
599 619 5.815233 TCTCTTTCTCAAGGTCACAAGAT 57.185 39.130 0.00 0.00 0.00 2.40
600 620 5.788450 TCTCTTTCTCAAGGTCACAAGATC 58.212 41.667 0.00 0.00 0.00 2.75
601 621 5.305386 TCTCTTTCTCAAGGTCACAAGATCA 59.695 40.000 0.00 0.00 0.00 2.92
603 623 6.537355 TCTTTCTCAAGGTCACAAGATCAAT 58.463 36.000 0.00 0.00 0.00 2.57
604 624 6.429078 TCTTTCTCAAGGTCACAAGATCAATG 59.571 38.462 0.00 0.00 0.00 2.82
606 626 5.868454 TCTCAAGGTCACAAGATCAATGAA 58.132 37.500 5.62 0.00 0.00 2.57
607 627 6.298361 TCTCAAGGTCACAAGATCAATGAAA 58.702 36.000 5.62 0.00 0.00 2.69
608 628 6.944290 TCTCAAGGTCACAAGATCAATGAAAT 59.056 34.615 5.62 0.00 0.00 2.17
609 629 7.120285 TCTCAAGGTCACAAGATCAATGAAATC 59.880 37.037 5.62 0.00 0.00 2.17
611 631 7.395206 TCAAGGTCACAAGATCAATGAAATCAT 59.605 33.333 5.62 0.00 38.41 2.45
613 633 8.991783 AGGTCACAAGATCAATGAAATCATAT 57.008 30.769 5.62 0.00 35.10 1.78
615 635 9.674824 GGTCACAAGATCAATGAAATCATATTC 57.325 33.333 5.62 0.00 35.10 1.75
616 636 9.378597 GTCACAAGATCAATGAAATCATATTCG 57.621 33.333 5.62 0.00 35.10 3.34
617 637 8.071967 TCACAAGATCAATGAAATCATATTCGC 58.928 33.333 5.62 0.00 35.10 4.70
619 639 8.407832 ACAAGATCAATGAAATCATATTCGCAA 58.592 29.630 5.62 0.00 35.10 4.85
620 640 9.240159 CAAGATCAATGAAATCATATTCGCAAA 57.760 29.630 0.00 0.00 35.10 3.68
622 642 9.806203 AGATCAATGAAATCATATTCGCAAAAA 57.194 25.926 0.00 0.00 35.10 1.94
653 673 6.600882 AAAAGAAATCAAGATGCTCATGGT 57.399 33.333 0.00 0.00 0.00 3.55
663 683 4.528674 CTCATGGTTGAGCGGGAG 57.471 61.111 0.00 0.00 42.79 4.30
664 684 1.599047 CTCATGGTTGAGCGGGAGT 59.401 57.895 0.00 0.00 42.79 3.85
665 685 0.036010 CTCATGGTTGAGCGGGAGTT 60.036 55.000 0.00 0.00 42.79 3.01
666 686 0.400213 TCATGGTTGAGCGGGAGTTT 59.600 50.000 0.00 0.00 0.00 2.66
667 687 0.523072 CATGGTTGAGCGGGAGTTTG 59.477 55.000 0.00 0.00 0.00 2.93
668 688 0.110486 ATGGTTGAGCGGGAGTTTGT 59.890 50.000 0.00 0.00 0.00 2.83
669 689 0.817634 TGGTTGAGCGGGAGTTTGTG 60.818 55.000 0.00 0.00 0.00 3.33
670 690 0.818040 GGTTGAGCGGGAGTTTGTGT 60.818 55.000 0.00 0.00 0.00 3.72
671 691 0.586802 GTTGAGCGGGAGTTTGTGTC 59.413 55.000 0.00 0.00 0.00 3.67
675 695 1.880027 GAGCGGGAGTTTGTGTCAAAT 59.120 47.619 0.00 0.00 0.00 2.32
676 696 2.293399 GAGCGGGAGTTTGTGTCAAATT 59.707 45.455 0.00 0.00 0.00 1.82
677 697 2.034558 AGCGGGAGTTTGTGTCAAATTG 59.965 45.455 0.00 0.00 0.00 2.32
678 698 2.393764 CGGGAGTTTGTGTCAAATTGC 58.606 47.619 0.00 0.38 0.00 3.56
679 699 2.034558 CGGGAGTTTGTGTCAAATTGCT 59.965 45.455 8.45 0.00 0.00 3.91
680 700 3.252215 CGGGAGTTTGTGTCAAATTGCTA 59.748 43.478 8.45 0.00 0.00 3.49
682 702 4.219033 GGAGTTTGTGTCAAATTGCTACG 58.781 43.478 0.00 0.00 0.00 3.51
684 704 5.243426 AGTTTGTGTCAAATTGCTACGTT 57.757 34.783 0.00 0.00 0.00 3.99
685 705 5.270853 AGTTTGTGTCAAATTGCTACGTTC 58.729 37.500 0.00 0.00 0.00 3.95
686 706 3.889196 TGTGTCAAATTGCTACGTTCC 57.111 42.857 0.00 0.00 0.00 3.62
687 707 3.206964 TGTGTCAAATTGCTACGTTCCA 58.793 40.909 0.00 0.00 0.00 3.53
691 711 4.759693 TGTCAAATTGCTACGTTCCAGAAT 59.240 37.500 0.00 0.00 0.00 2.40
692 712 5.935206 TGTCAAATTGCTACGTTCCAGAATA 59.065 36.000 0.00 0.00 0.00 1.75
693 713 6.428465 TGTCAAATTGCTACGTTCCAGAATAA 59.572 34.615 0.00 0.00 0.00 1.40
694 714 6.961554 GTCAAATTGCTACGTTCCAGAATAAG 59.038 38.462 0.00 0.00 0.00 1.73
695 715 6.093495 TCAAATTGCTACGTTCCAGAATAAGG 59.907 38.462 0.00 0.00 0.00 2.69
696 716 4.546829 TTGCTACGTTCCAGAATAAGGT 57.453 40.909 0.00 0.00 0.00 3.50
697 717 4.546829 TGCTACGTTCCAGAATAAGGTT 57.453 40.909 0.00 0.00 0.00 3.50
700 720 4.933400 GCTACGTTCCAGAATAAGGTTTCA 59.067 41.667 0.00 0.00 0.00 2.69
701 721 5.163884 GCTACGTTCCAGAATAAGGTTTCAC 60.164 44.000 0.00 0.00 0.00 3.18
702 722 4.710324 ACGTTCCAGAATAAGGTTTCACA 58.290 39.130 0.00 0.00 0.00 3.58
703 723 4.514066 ACGTTCCAGAATAAGGTTTCACAC 59.486 41.667 0.00 0.00 0.00 3.82
704 724 4.755123 CGTTCCAGAATAAGGTTTCACACT 59.245 41.667 0.00 0.00 0.00 3.55
705 725 5.334105 CGTTCCAGAATAAGGTTTCACACTG 60.334 44.000 0.00 0.00 0.00 3.66
706 726 5.304686 TCCAGAATAAGGTTTCACACTGT 57.695 39.130 0.00 0.00 0.00 3.55
707 727 5.305585 TCCAGAATAAGGTTTCACACTGTC 58.694 41.667 0.00 0.00 0.00 3.51
708 728 4.152402 CCAGAATAAGGTTTCACACTGTCG 59.848 45.833 0.00 0.00 0.00 4.35
710 730 2.605837 TAAGGTTTCACACTGTCGCA 57.394 45.000 0.00 0.00 0.00 5.10
711 731 1.014352 AAGGTTTCACACTGTCGCAC 58.986 50.000 0.00 0.00 0.00 5.34
712 732 0.178068 AGGTTTCACACTGTCGCACT 59.822 50.000 0.00 0.00 0.00 4.40
713 733 1.411246 AGGTTTCACACTGTCGCACTA 59.589 47.619 0.00 0.00 0.00 2.74
715 735 2.806244 GGTTTCACACTGTCGCACTAAT 59.194 45.455 0.00 0.00 0.00 1.73
716 736 3.120649 GGTTTCACACTGTCGCACTAATC 60.121 47.826 0.00 0.00 0.00 1.75
718 738 2.672714 TCACACTGTCGCACTAATCAC 58.327 47.619 0.00 0.00 0.00 3.06
721 741 0.243907 ACTGTCGCACTAATCACGCT 59.756 50.000 0.00 0.00 0.00 5.07
722 742 0.917259 CTGTCGCACTAATCACGCTC 59.083 55.000 0.00 0.00 0.00 5.03
723 743 0.796870 TGTCGCACTAATCACGCTCG 60.797 55.000 0.00 0.00 0.00 5.03
724 744 1.872234 TCGCACTAATCACGCTCGC 60.872 57.895 0.00 0.00 0.00 5.03
725 745 2.158330 CGCACTAATCACGCTCGCA 61.158 57.895 0.00 0.00 0.00 5.10
727 747 1.625870 CACTAATCACGCTCGCACG 59.374 57.895 0.00 0.00 39.50 5.34
728 748 2.158959 ACTAATCACGCTCGCACGC 61.159 57.895 0.00 0.00 36.19 5.34
729 749 2.860628 CTAATCACGCTCGCACGCC 61.861 63.158 0.00 0.00 36.19 5.68
730 750 3.634702 TAATCACGCTCGCACGCCA 62.635 57.895 0.00 0.00 36.19 5.69
737 757 4.000557 CTCGCACGCCACACACAC 62.001 66.667 0.00 0.00 0.00 3.82
740 760 4.250431 GCACGCCACACACACCAC 62.250 66.667 0.00 0.00 0.00 4.16
741 761 3.582120 CACGCCACACACACCACC 61.582 66.667 0.00 0.00 0.00 4.61
745 765 3.279116 CCACACACACCACCGCTG 61.279 66.667 0.00 0.00 0.00 5.18
780 1509 7.878127 CCCTCTTTTCATCCGTATATTGTATGT 59.122 37.037 0.00 0.00 0.00 2.29
838 1567 1.467035 CCGACGTCACCTGTAGCTAAC 60.467 57.143 17.16 0.00 0.00 2.34
857 1586 1.176527 CCCATGTGGTTGTAAGCTGG 58.823 55.000 0.00 0.00 0.00 4.85
916 1645 3.009584 TGGCCAAGATGGTGTACAATACA 59.990 43.478 0.61 0.00 40.46 2.29
917 1646 4.013728 GGCCAAGATGGTGTACAATACAA 58.986 43.478 0.00 0.00 40.93 2.41
918 1647 4.644685 GGCCAAGATGGTGTACAATACAAT 59.355 41.667 0.00 0.00 40.93 2.71
920 1649 5.450412 GCCAAGATGGTGTACAATACAATGG 60.450 44.000 0.00 8.95 40.93 3.16
922 1651 6.376864 CCAAGATGGTGTACAATACAATGGAA 59.623 38.462 0.00 0.00 40.93 3.53
923 1652 7.250569 CAAGATGGTGTACAATACAATGGAAC 58.749 38.462 0.00 0.00 40.93 3.62
924 1653 6.721318 AGATGGTGTACAATACAATGGAACT 58.279 36.000 0.00 0.00 40.93 3.01
927 1660 7.011499 TGGTGTACAATACAATGGAACTACT 57.989 36.000 0.00 0.00 40.93 2.57
1240 1981 4.224715 GGAGACGTCGACAATGATGATA 57.775 45.455 17.16 0.00 0.00 2.15
1242 1989 5.041287 GGAGACGTCGACAATGATGATAAA 58.959 41.667 17.16 0.00 0.00 1.40
1485 2232 1.195442 TGGCCGTGTACTGGATCCAA 61.195 55.000 17.00 0.00 0.00 3.53
1890 2643 1.562672 GGTACATGGAGTGGCTGGGT 61.563 60.000 0.00 0.00 0.00 4.51
1926 2679 2.222445 GTCGGTGCTGTACGTTTCATTT 59.778 45.455 0.00 0.00 0.00 2.32
2052 2805 3.138798 GACGTGAGCCGGAGCCTA 61.139 66.667 5.05 0.00 42.24 3.93
2122 2875 2.738521 CCAAGGTCCTGTCGCACG 60.739 66.667 0.00 0.00 0.00 5.34
2379 3132 2.834549 TGAGATCAGGGAAAGAGTGGAC 59.165 50.000 0.00 0.00 0.00 4.02
2395 3148 0.537188 GGACGCTCTGAAAGGGATGA 59.463 55.000 0.00 0.00 35.24 2.92
2589 3350 8.229137 TCGGAGTTAAACAACATTTAATAACCG 58.771 33.333 17.77 17.77 37.62 4.44
2608 3369 3.134458 CCGGGATTGCTAAATCTCAGTC 58.866 50.000 0.00 0.00 42.61 3.51
2610 3371 3.490933 CGGGATTGCTAAATCTCAGTCGA 60.491 47.826 0.00 0.00 42.61 4.20
2613 3374 5.112686 GGATTGCTAAATCTCAGTCGACTT 58.887 41.667 17.26 2.43 41.74 3.01
2614 3375 5.233263 GGATTGCTAAATCTCAGTCGACTTC 59.767 44.000 17.26 5.92 41.74 3.01
2615 3376 5.392767 TTGCTAAATCTCAGTCGACTTCT 57.607 39.130 17.26 0.00 0.00 2.85
2616 3377 5.392767 TGCTAAATCTCAGTCGACTTCTT 57.607 39.130 17.26 7.39 0.00 2.52
2617 3378 5.164233 TGCTAAATCTCAGTCGACTTCTTG 58.836 41.667 17.26 5.69 0.00 3.02
2640 3699 4.979197 GGTCGATGATATATTCGCAGGATC 59.021 45.833 2.52 0.00 35.39 3.36
2645 3704 6.358294 CGATGATATATTCGCAGGATCTTACG 59.642 42.308 0.00 0.00 0.00 3.18
2648 3707 4.848562 ATATTCGCAGGATCTTACGTGA 57.151 40.909 0.00 0.00 0.00 4.35
2658 3717 2.273370 TCTTACGTGAAGATCGGTGC 57.727 50.000 0.00 0.00 39.36 5.01
2659 3718 0.914551 CTTACGTGAAGATCGGTGCG 59.085 55.000 0.00 0.00 37.33 5.34
2662 3721 0.108804 ACGTGAAGATCGGTGCGAAT 60.109 50.000 9.10 0.00 39.99 3.34
2663 3722 0.999406 CGTGAAGATCGGTGCGAATT 59.001 50.000 0.00 0.00 39.99 2.17
2664 3723 1.393539 CGTGAAGATCGGTGCGAATTT 59.606 47.619 0.00 0.00 39.99 1.82
2665 3724 2.159707 CGTGAAGATCGGTGCGAATTTT 60.160 45.455 0.00 0.00 39.99 1.82
2666 3725 3.666902 CGTGAAGATCGGTGCGAATTTTT 60.667 43.478 0.00 0.00 39.99 1.94
2728 3900 4.552767 GCCGTATGCAGCAACTTAATAGTG 60.553 45.833 0.00 0.00 40.77 2.74
2738 3910 7.623506 GCAGCAACTTAATAGTGACACGTTAAT 60.624 37.037 15.11 4.36 34.01 1.40
2757 3929 3.560636 ATTGCTTATTACTGCCTCCGT 57.439 42.857 0.00 0.00 0.00 4.69
2777 3949 8.241367 CCTCCGTTTTAGCAAGTTAAATTGTAT 58.759 33.333 16.26 8.68 32.56 2.29
2829 4003 9.924650 AATTTAGTTACGTCACATCTAAGTTCT 57.075 29.630 2.23 0.00 0.00 3.01
2840 4014 4.460382 ACATCTAAGTTCTAAACCGTCCGA 59.540 41.667 0.00 0.00 0.00 4.55
2841 4015 5.126707 ACATCTAAGTTCTAAACCGTCCGAT 59.873 40.000 0.00 0.00 0.00 4.18
2842 4016 5.240713 TCTAAGTTCTAAACCGTCCGATC 57.759 43.478 0.00 0.00 0.00 3.69
2843 4017 4.946157 TCTAAGTTCTAAACCGTCCGATCT 59.054 41.667 0.00 0.00 0.00 2.75
2844 4018 3.505464 AGTTCTAAACCGTCCGATCTG 57.495 47.619 0.00 0.00 0.00 2.90
2850 4024 2.105128 CCGTCCGATCTGCTGGTC 59.895 66.667 0.00 0.00 0.00 4.02
2868 4042 6.202570 TGCTGGTCTTTAATTTTCATGCAAAC 59.797 34.615 0.00 0.00 0.00 2.93
2871 4045 6.640499 TGGTCTTTAATTTTCATGCAAACTCG 59.360 34.615 0.00 0.00 0.00 4.18
2917 4091 1.841663 ATTGTCTTGTCACACGCGCC 61.842 55.000 5.73 0.00 0.00 6.53
2937 4111 0.736053 GAGCGTCCTCGTCAATCTCT 59.264 55.000 0.00 0.00 39.49 3.10
3002 4176 2.140717 GGGTTACGTTCTCAAGTGGTG 58.859 52.381 0.00 0.00 0.00 4.17
3003 4177 2.484241 GGGTTACGTTCTCAAGTGGTGT 60.484 50.000 0.00 0.00 0.00 4.16
3037 4211 5.700373 TCTGCTTTGTTTGTTTTCTTTTGCT 59.300 32.000 0.00 0.00 0.00 3.91
3123 4297 9.810545 TTTTCTTTTTCTTTGGACGTCAATATT 57.189 25.926 18.91 0.00 34.98 1.28
3128 4302 6.746745 TTCTTTGGACGTCAATATTTACCC 57.253 37.500 18.91 0.00 34.98 3.69
3130 4304 2.553086 TGGACGTCAATATTTACCCGC 58.447 47.619 18.91 0.00 0.00 6.13
3179 4353 2.903798 ACGAAAGGTTTGGTACGACAA 58.096 42.857 0.00 0.00 0.00 3.18
3182 4356 3.544637 CGAAAGGTTTGGTACGACAACAC 60.545 47.826 0.00 0.00 0.00 3.32
3191 4365 1.002773 GTACGACAACACCCCCAGAAT 59.997 52.381 0.00 0.00 0.00 2.40
3192 4366 0.250727 ACGACAACACCCCCAGAATG 60.251 55.000 0.00 0.00 0.00 2.67
3195 4369 1.886542 GACAACACCCCCAGAATGAAC 59.113 52.381 0.00 0.00 39.69 3.18
3224 4398 0.824759 ACTACTGCCCGAACATCCTC 59.175 55.000 0.00 0.00 0.00 3.71
3230 4404 1.922821 CCCGAACATCCTCCCCATT 59.077 57.895 0.00 0.00 0.00 3.16
3261 4435 5.183228 CAGGCCTTTCCTTCGTAAAAGATA 58.817 41.667 0.00 0.00 44.75 1.98
3325 4502 3.818773 CCTGTGACAAATAAAAGTCCGGT 59.181 43.478 0.00 0.00 33.89 5.28
3331 4508 5.520649 TGACAAATAAAAGTCCGGTTTTTGC 59.479 36.000 21.53 9.40 33.89 3.68
3370 4547 5.562890 GCCGTCAACTCTAAAAAGCAGAAAT 60.563 40.000 0.00 0.00 0.00 2.17
3371 4548 6.438763 CCGTCAACTCTAAAAAGCAGAAATT 58.561 36.000 0.00 0.00 0.00 1.82
3372 4549 6.360681 CCGTCAACTCTAAAAAGCAGAAATTG 59.639 38.462 0.00 0.00 0.00 2.32
3373 4550 6.912591 CGTCAACTCTAAAAAGCAGAAATTGT 59.087 34.615 0.00 0.00 0.00 2.71
3374 4551 7.096885 CGTCAACTCTAAAAAGCAGAAATTGTG 60.097 37.037 0.00 0.00 0.00 3.33
3375 4552 7.915397 GTCAACTCTAAAAAGCAGAAATTGTGA 59.085 33.333 0.00 0.00 0.00 3.58
3376 4553 8.632679 TCAACTCTAAAAAGCAGAAATTGTGAT 58.367 29.630 0.00 0.00 0.00 3.06
3377 4554 8.697067 CAACTCTAAAAAGCAGAAATTGTGATG 58.303 33.333 0.00 0.00 0.00 3.07
3378 4555 7.373493 ACTCTAAAAAGCAGAAATTGTGATGG 58.627 34.615 0.00 0.00 0.00 3.51
3379 4556 7.231317 ACTCTAAAAAGCAGAAATTGTGATGGA 59.769 33.333 0.00 0.00 0.00 3.41
3380 4557 8.125978 TCTAAAAAGCAGAAATTGTGATGGAT 57.874 30.769 0.00 0.00 0.00 3.41
3381 4558 9.241919 TCTAAAAAGCAGAAATTGTGATGGATA 57.758 29.630 0.00 0.00 0.00 2.59
3382 4559 9.859427 CTAAAAAGCAGAAATTGTGATGGATAA 57.141 29.630 0.00 0.00 0.00 1.75
3384 4561 9.729281 AAAAAGCAGAAATTGTGATGGATAATT 57.271 25.926 0.00 0.00 0.00 1.40
3385 4562 9.729281 AAAAGCAGAAATTGTGATGGATAATTT 57.271 25.926 0.00 0.00 37.89 1.82
3386 4563 9.729281 AAAGCAGAAATTGTGATGGATAATTTT 57.271 25.926 0.00 0.00 35.98 1.82
3387 4564 9.729281 AAGCAGAAATTGTGATGGATAATTTTT 57.271 25.926 0.00 0.00 35.98 1.94
3419 4596 9.771915 TTTTGCAATGATTGAAAAGAAAAAGTC 57.228 25.926 9.76 0.00 39.27 3.01
3420 4597 8.489990 TTGCAATGATTGAAAAGAAAAAGTCA 57.510 26.923 9.76 0.00 0.00 3.41
3421 4598 8.665643 TGCAATGATTGAAAAGAAAAAGTCAT 57.334 26.923 9.76 0.00 0.00 3.06
3422 4599 8.552865 TGCAATGATTGAAAAGAAAAAGTCATG 58.447 29.630 9.76 0.00 0.00 3.07
3423 4600 8.013378 GCAATGATTGAAAAGAAAAAGTCATGG 58.987 33.333 9.76 0.00 0.00 3.66
3424 4601 7.662604 ATGATTGAAAAGAAAAAGTCATGGC 57.337 32.000 0.00 0.00 0.00 4.40
3425 4602 6.580788 TGATTGAAAAGAAAAAGTCATGGCA 58.419 32.000 0.00 0.00 0.00 4.92
3426 4603 7.046652 TGATTGAAAAGAAAAAGTCATGGCAA 58.953 30.769 0.00 0.00 0.00 4.52
3427 4604 7.716123 TGATTGAAAAGAAAAAGTCATGGCAAT 59.284 29.630 0.00 0.00 0.00 3.56
3428 4605 7.862512 TTGAAAAGAAAAAGTCATGGCAATT 57.137 28.000 0.00 0.00 0.00 2.32
3429 4606 7.862512 TGAAAAGAAAAAGTCATGGCAATTT 57.137 28.000 0.00 0.00 0.00 1.82
3430 4607 7.918643 TGAAAAGAAAAAGTCATGGCAATTTC 58.081 30.769 15.89 15.89 0.00 2.17
3431 4608 6.866010 AAAGAAAAAGTCATGGCAATTTCC 57.134 33.333 18.54 1.50 0.00 3.13
3432 4609 5.549742 AGAAAAAGTCATGGCAATTTCCA 57.450 34.783 18.54 0.00 40.97 3.53
3434 4611 6.168389 AGAAAAAGTCATGGCAATTTCCATC 58.832 36.000 18.54 0.00 44.63 3.51
3435 4612 5.750352 AAAAGTCATGGCAATTTCCATCT 57.250 34.783 6.65 0.00 44.63 2.90
3436 4613 4.730949 AAGTCATGGCAATTTCCATCTG 57.269 40.909 6.65 0.00 44.63 2.90
3437 4614 3.705051 AGTCATGGCAATTTCCATCTGT 58.295 40.909 6.65 0.00 44.63 3.41
3438 4615 4.858850 AGTCATGGCAATTTCCATCTGTA 58.141 39.130 6.65 0.00 44.63 2.74
3439 4616 4.641989 AGTCATGGCAATTTCCATCTGTAC 59.358 41.667 6.65 3.96 44.63 2.90
3440 4617 4.398988 GTCATGGCAATTTCCATCTGTACA 59.601 41.667 6.65 0.00 44.63 2.90
3441 4618 5.068198 GTCATGGCAATTTCCATCTGTACAT 59.932 40.000 6.65 0.00 44.63 2.29
3442 4619 6.262944 GTCATGGCAATTTCCATCTGTACATA 59.737 38.462 6.65 0.00 44.63 2.29
3443 4620 6.262944 TCATGGCAATTTCCATCTGTACATAC 59.737 38.462 6.65 0.00 44.63 2.39
3444 4621 5.504853 TGGCAATTTCCATCTGTACATACA 58.495 37.500 0.00 0.00 34.56 2.29
3445 4622 6.128486 TGGCAATTTCCATCTGTACATACAT 58.872 36.000 0.00 0.00 35.36 2.29
3446 4623 6.039605 TGGCAATTTCCATCTGTACATACATG 59.960 38.462 0.00 0.00 35.36 3.21
3447 4624 6.441274 GCAATTTCCATCTGTACATACATGG 58.559 40.000 17.12 17.12 37.58 3.66
3448 4625 6.039717 GCAATTTCCATCTGTACATACATGGT 59.960 38.462 20.28 6.51 37.52 3.55
3449 4626 7.420002 CAATTTCCATCTGTACATACATGGTG 58.580 38.462 20.28 12.13 37.52 4.17
3450 4627 4.687901 TCCATCTGTACATACATGGTGG 57.312 45.455 20.28 13.98 37.52 4.61
3451 4628 4.037222 TCCATCTGTACATACATGGTGGT 58.963 43.478 20.28 0.00 37.52 4.16
3452 4629 4.129380 CCATCTGTACATACATGGTGGTG 58.871 47.826 15.78 1.85 33.66 4.17
3453 4630 3.904800 TCTGTACATACATGGTGGTGG 57.095 47.619 0.00 0.00 35.36 4.61
3454 4631 3.445987 TCTGTACATACATGGTGGTGGA 58.554 45.455 0.00 0.00 35.36 4.02
3455 4632 3.841255 TCTGTACATACATGGTGGTGGAA 59.159 43.478 0.00 0.00 35.36 3.53
3456 4633 4.287326 TCTGTACATACATGGTGGTGGAAA 59.713 41.667 0.00 0.00 35.36 3.13
3457 4634 4.986783 TGTACATACATGGTGGTGGAAAA 58.013 39.130 0.00 0.00 0.00 2.29
3458 4635 5.386060 TGTACATACATGGTGGTGGAAAAA 58.614 37.500 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 0.736325 GTCGGCACTGACGTTATGCT 60.736 55.000 16.16 0.00 39.38 3.79
83 84 3.196254 CAGCTTGCTTCCAAATGGGTTAT 59.804 43.478 0.00 0.00 38.11 1.89
180 182 1.069227 GTGAAACCTGTGATGCGTTCC 60.069 52.381 0.00 0.00 0.00 3.62
181 183 1.601903 TGTGAAACCTGTGATGCGTTC 59.398 47.619 0.00 0.00 34.36 3.95
182 184 1.674359 TGTGAAACCTGTGATGCGTT 58.326 45.000 0.00 0.00 34.36 4.84
183 185 1.536766 CATGTGAAACCTGTGATGCGT 59.463 47.619 0.00 0.00 34.36 5.24
191 193 3.188048 GTCTGCTTCTCATGTGAAACCTG 59.812 47.826 11.11 9.07 34.36 4.00
203 205 5.410746 TGAAATGAAGATGTGTCTGCTTCTC 59.589 40.000 0.00 0.00 38.96 2.87
216 218 9.649167 GGAGAAATTTTGATGTGAAATGAAGAT 57.351 29.630 0.00 0.00 0.00 2.40
244 246 0.319728 CCGTGGCCATGGATAGAGAG 59.680 60.000 36.99 8.69 39.90 3.20
246 248 2.440946 TCCGTGGCCATGGATAGAG 58.559 57.895 38.16 15.70 41.36 2.43
247 249 4.718143 TCCGTGGCCATGGATAGA 57.282 55.556 38.16 19.99 41.36 1.98
289 291 3.482722 TTAGTTTGCGGAGAGAGTACG 57.517 47.619 0.00 0.00 0.00 3.67
291 293 9.745880 CTTTTATATTAGTTTGCGGAGAGAGTA 57.254 33.333 0.00 0.00 0.00 2.59
292 294 7.224949 GCTTTTATATTAGTTTGCGGAGAGAGT 59.775 37.037 0.00 0.00 0.00 3.24
293 295 7.567771 CGCTTTTATATTAGTTTGCGGAGAGAG 60.568 40.741 0.00 0.00 38.74 3.20
294 296 6.200286 CGCTTTTATATTAGTTTGCGGAGAGA 59.800 38.462 0.00 0.00 38.74 3.10
295 297 6.018994 ACGCTTTTATATTAGTTTGCGGAGAG 60.019 38.462 0.00 0.00 45.26 3.20
296 298 5.813672 ACGCTTTTATATTAGTTTGCGGAGA 59.186 36.000 0.00 0.00 45.26 3.71
297 299 6.044512 ACGCTTTTATATTAGTTTGCGGAG 57.955 37.500 0.00 0.00 45.26 4.63
298 300 6.425577 AACGCTTTTATATTAGTTTGCGGA 57.574 33.333 0.00 0.00 45.26 5.54
299 301 8.117988 TCTAAACGCTTTTATATTAGTTTGCGG 58.882 33.333 0.00 0.00 45.26 5.69
300 302 9.646336 ATCTAAACGCTTTTATATTAGTTTGCG 57.354 29.630 0.00 0.00 46.21 4.85
314 316 9.918630 TCACTACTTTACTAATCTAAACGCTTT 57.081 29.630 0.00 0.00 0.00 3.51
316 318 9.733219 GATCACTACTTTACTAATCTAAACGCT 57.267 33.333 0.00 0.00 0.00 5.07
317 319 9.733219 AGATCACTACTTTACTAATCTAAACGC 57.267 33.333 0.00 0.00 0.00 4.84
323 325 9.733219 GCGTTTAGATCACTACTTTACTAATCT 57.267 33.333 0.00 0.00 0.00 2.40
324 326 9.733219 AGCGTTTAGATCACTACTTTACTAATC 57.267 33.333 0.00 0.00 0.00 1.75
326 328 9.918630 AAAGCGTTTAGATCACTACTTTACTAA 57.081 29.630 0.00 0.00 0.00 2.24
327 329 9.918630 AAAAGCGTTTAGATCACTACTTTACTA 57.081 29.630 0.00 0.00 0.00 1.82
328 330 8.828688 AAAAGCGTTTAGATCACTACTTTACT 57.171 30.769 0.00 0.00 0.00 2.24
346 348 9.841295 TCCCTCTGTAAATTAATATAAAAGCGT 57.159 29.630 0.00 0.00 0.00 5.07
395 414 6.368779 AGCCCACTTGTACTTTGAGTTATA 57.631 37.500 0.00 0.00 0.00 0.98
406 425 2.812011 CTGGTTGTAAGCCCACTTGTAC 59.188 50.000 0.00 0.00 36.57 2.90
421 440 5.175859 ACAATACTACATTCGTCCTGGTTG 58.824 41.667 0.00 0.00 0.00 3.77
434 454 7.905126 CATCGTTGCAATAGAACAATACTACA 58.095 34.615 0.59 0.00 0.00 2.74
452 472 1.236616 TGGCTTGGAGTGCATCGTTG 61.237 55.000 0.00 0.00 0.00 4.10
453 473 0.537143 TTGGCTTGGAGTGCATCGTT 60.537 50.000 0.00 0.00 0.00 3.85
454 474 0.957395 CTTGGCTTGGAGTGCATCGT 60.957 55.000 0.00 0.00 0.00 3.73
455 475 0.674581 TCTTGGCTTGGAGTGCATCG 60.675 55.000 0.00 0.00 0.00 3.84
456 476 1.093159 CTCTTGGCTTGGAGTGCATC 58.907 55.000 0.00 0.00 0.00 3.91
457 477 0.694771 TCTCTTGGCTTGGAGTGCAT 59.305 50.000 0.00 0.00 0.00 3.96
458 478 0.694771 ATCTCTTGGCTTGGAGTGCA 59.305 50.000 0.00 0.00 0.00 4.57
459 479 2.284190 GTATCTCTTGGCTTGGAGTGC 58.716 52.381 0.00 0.00 0.00 4.40
460 480 3.616956 TGTATCTCTTGGCTTGGAGTG 57.383 47.619 0.00 0.00 0.00 3.51
461 481 3.683847 GCATGTATCTCTTGGCTTGGAGT 60.684 47.826 0.00 0.00 0.00 3.85
463 483 2.239402 TGCATGTATCTCTTGGCTTGGA 59.761 45.455 0.00 0.00 0.00 3.53
464 484 2.646930 TGCATGTATCTCTTGGCTTGG 58.353 47.619 0.00 0.00 0.00 3.61
465 485 4.913335 ATTGCATGTATCTCTTGGCTTG 57.087 40.909 0.00 0.00 0.00 4.01
466 486 5.530171 CAGTATTGCATGTATCTCTTGGCTT 59.470 40.000 0.00 0.00 0.00 4.35
467 487 5.061853 CAGTATTGCATGTATCTCTTGGCT 58.938 41.667 0.00 0.00 0.00 4.75
468 488 4.214971 CCAGTATTGCATGTATCTCTTGGC 59.785 45.833 0.00 0.00 0.00 4.52
469 489 4.758674 CCCAGTATTGCATGTATCTCTTGG 59.241 45.833 0.00 0.00 0.00 3.61
470 490 5.614308 TCCCAGTATTGCATGTATCTCTTG 58.386 41.667 0.00 0.00 0.00 3.02
471 491 5.221803 CCTCCCAGTATTGCATGTATCTCTT 60.222 44.000 0.00 0.00 0.00 2.85
472 492 4.285517 CCTCCCAGTATTGCATGTATCTCT 59.714 45.833 0.00 0.00 0.00 3.10
473 493 4.564406 CCCTCCCAGTATTGCATGTATCTC 60.564 50.000 0.00 0.00 0.00 2.75
475 495 3.327757 TCCCTCCCAGTATTGCATGTATC 59.672 47.826 0.00 0.00 0.00 2.24
477 497 2.770447 TCCCTCCCAGTATTGCATGTA 58.230 47.619 0.00 0.00 0.00 2.29
479 499 2.158564 ACATCCCTCCCAGTATTGCATG 60.159 50.000 0.00 0.00 0.00 4.06
480 500 2.107204 GACATCCCTCCCAGTATTGCAT 59.893 50.000 0.00 0.00 0.00 3.96
483 503 3.070734 CAGAGACATCCCTCCCAGTATTG 59.929 52.174 0.00 0.00 33.76 1.90
484 504 3.310954 ACAGAGACATCCCTCCCAGTATT 60.311 47.826 0.00 0.00 33.76 1.89
485 505 2.248686 ACAGAGACATCCCTCCCAGTAT 59.751 50.000 0.00 0.00 33.76 2.12
486 506 1.646447 ACAGAGACATCCCTCCCAGTA 59.354 52.381 0.00 0.00 33.76 2.74
488 508 1.118838 GACAGAGACATCCCTCCCAG 58.881 60.000 0.00 0.00 33.76 4.45
489 509 0.712979 AGACAGAGACATCCCTCCCA 59.287 55.000 0.00 0.00 33.76 4.37
490 510 1.063266 AGAGACAGAGACATCCCTCCC 60.063 57.143 0.00 0.00 33.76 4.30
491 511 2.306847 GAGAGACAGAGACATCCCTCC 58.693 57.143 0.00 0.00 33.76 4.30
492 512 2.306847 GGAGAGACAGAGACATCCCTC 58.693 57.143 0.00 0.00 0.00 4.30
494 514 2.151502 TGGAGAGACAGAGACATCCC 57.848 55.000 0.00 0.00 0.00 3.85
495 515 3.703556 TCATTGGAGAGACAGAGACATCC 59.296 47.826 0.00 0.00 0.00 3.51
496 516 4.998671 TCATTGGAGAGACAGAGACATC 57.001 45.455 0.00 0.00 0.00 3.06
497 517 5.210430 AGATCATTGGAGAGACAGAGACAT 58.790 41.667 0.00 0.00 0.00 3.06
499 519 6.489700 TGATAGATCATTGGAGAGACAGAGAC 59.510 42.308 0.00 0.00 0.00 3.36
500 520 6.608922 TGATAGATCATTGGAGAGACAGAGA 58.391 40.000 0.00 0.00 0.00 3.10
501 521 6.897706 TGATAGATCATTGGAGAGACAGAG 57.102 41.667 0.00 0.00 0.00 3.35
502 522 6.436847 GGATGATAGATCATTGGAGAGACAGA 59.563 42.308 6.46 0.00 46.84 3.41
503 523 6.351202 GGGATGATAGATCATTGGAGAGACAG 60.351 46.154 6.46 0.00 46.84 3.51
504 524 5.483231 GGGATGATAGATCATTGGAGAGACA 59.517 44.000 6.46 0.00 46.84 3.41
505 525 5.483231 TGGGATGATAGATCATTGGAGAGAC 59.517 44.000 6.46 0.00 46.84 3.36
507 527 5.484644 ACTGGGATGATAGATCATTGGAGAG 59.515 44.000 6.46 2.70 46.84 3.20
508 528 5.409712 ACTGGGATGATAGATCATTGGAGA 58.590 41.667 6.46 0.00 46.84 3.71
509 529 5.247792 TGACTGGGATGATAGATCATTGGAG 59.752 44.000 6.46 5.58 46.84 3.86
510 530 5.012458 GTGACTGGGATGATAGATCATTGGA 59.988 44.000 6.46 0.00 46.84 3.53
512 532 5.861727 TGTGACTGGGATGATAGATCATTG 58.138 41.667 6.46 1.73 46.84 2.82
516 536 4.798924 GCACTGTGACTGGGATGATAGATC 60.799 50.000 12.86 0.00 0.00 2.75
517 537 3.070734 GCACTGTGACTGGGATGATAGAT 59.929 47.826 12.86 0.00 0.00 1.98
518 538 2.432146 GCACTGTGACTGGGATGATAGA 59.568 50.000 12.86 0.00 0.00 1.98
519 539 2.169144 TGCACTGTGACTGGGATGATAG 59.831 50.000 12.86 0.00 0.00 2.08
520 540 2.169144 CTGCACTGTGACTGGGATGATA 59.831 50.000 12.86 0.00 0.00 2.15
521 541 0.986527 TGCACTGTGACTGGGATGAT 59.013 50.000 12.86 0.00 0.00 2.45
523 543 0.035881 ACTGCACTGTGACTGGGATG 59.964 55.000 12.86 0.00 0.00 3.51
524 544 0.322975 GACTGCACTGTGACTGGGAT 59.677 55.000 12.86 0.00 0.00 3.85
525 545 1.048160 TGACTGCACTGTGACTGGGA 61.048 55.000 12.86 0.00 0.00 4.37
526 546 0.179048 TTGACTGCACTGTGACTGGG 60.179 55.000 12.86 0.00 0.00 4.45
527 547 1.667236 TTTGACTGCACTGTGACTGG 58.333 50.000 12.86 0.41 0.00 4.00
528 548 3.562973 AGAATTTGACTGCACTGTGACTG 59.437 43.478 12.86 9.35 0.00 3.51
529 549 3.813443 AGAATTTGACTGCACTGTGACT 58.187 40.909 12.86 0.00 0.00 3.41
530 550 4.558538 AAGAATTTGACTGCACTGTGAC 57.441 40.909 12.86 3.63 0.00 3.67
546 566 8.200120 GCAGATAAATTAAAGCTCCCAAAGAAT 58.800 33.333 0.00 0.00 0.00 2.40
547 567 7.397192 AGCAGATAAATTAAAGCTCCCAAAGAA 59.603 33.333 0.00 0.00 0.00 2.52
549 569 7.105241 AGCAGATAAATTAAAGCTCCCAAAG 57.895 36.000 0.00 0.00 0.00 2.77
550 570 7.100458 GAGCAGATAAATTAAAGCTCCCAAA 57.900 36.000 11.23 0.00 41.83 3.28
555 575 9.108284 AGAGAAAGAGCAGATAAATTAAAGCTC 57.892 33.333 13.27 13.27 46.47 4.09
562 582 9.512588 TTGAGAAAGAGAAAGAGCAGATAAATT 57.487 29.630 0.00 0.00 0.00 1.82
563 583 9.165035 CTTGAGAAAGAGAAAGAGCAGATAAAT 57.835 33.333 0.00 0.00 0.00 1.40
564 584 7.605691 CCTTGAGAAAGAGAAAGAGCAGATAAA 59.394 37.037 0.00 0.00 0.00 1.40
565 585 7.102346 CCTTGAGAAAGAGAAAGAGCAGATAA 58.898 38.462 0.00 0.00 0.00 1.75
566 586 6.212388 ACCTTGAGAAAGAGAAAGAGCAGATA 59.788 38.462 0.00 0.00 0.00 1.98
569 589 4.640364 ACCTTGAGAAAGAGAAAGAGCAG 58.360 43.478 0.00 0.00 0.00 4.24
571 591 4.450757 GTGACCTTGAGAAAGAGAAAGAGC 59.549 45.833 0.00 0.00 0.00 4.09
572 592 5.605534 TGTGACCTTGAGAAAGAGAAAGAG 58.394 41.667 0.00 0.00 0.00 2.85
577 597 5.305386 TGATCTTGTGACCTTGAGAAAGAGA 59.695 40.000 0.00 0.00 0.00 3.10
578 598 5.545588 TGATCTTGTGACCTTGAGAAAGAG 58.454 41.667 0.00 0.00 0.00 2.85
579 599 5.551305 TGATCTTGTGACCTTGAGAAAGA 57.449 39.130 0.00 0.00 0.00 2.52
580 600 6.429078 TCATTGATCTTGTGACCTTGAGAAAG 59.571 38.462 0.00 0.00 0.00 2.62
581 601 6.298361 TCATTGATCTTGTGACCTTGAGAAA 58.702 36.000 0.00 0.00 0.00 2.52
582 602 5.868454 TCATTGATCTTGTGACCTTGAGAA 58.132 37.500 0.00 0.00 0.00 2.87
583 603 5.488262 TCATTGATCTTGTGACCTTGAGA 57.512 39.130 0.00 0.00 0.00 3.27
584 604 6.564709 TTTCATTGATCTTGTGACCTTGAG 57.435 37.500 0.00 0.00 0.00 3.02
589 609 9.674824 GAATATGATTTCATTGATCTTGTGACC 57.325 33.333 0.00 0.00 37.76 4.02
590 610 9.378597 CGAATATGATTTCATTGATCTTGTGAC 57.621 33.333 0.00 0.00 37.76 3.67
591 611 8.071967 GCGAATATGATTTCATTGATCTTGTGA 58.928 33.333 0.00 0.00 37.76 3.58
592 612 7.858879 TGCGAATATGATTTCATTGATCTTGTG 59.141 33.333 0.00 0.00 37.76 3.33
593 613 7.933396 TGCGAATATGATTTCATTGATCTTGT 58.067 30.769 0.00 0.00 37.76 3.16
594 614 8.791355 TTGCGAATATGATTTCATTGATCTTG 57.209 30.769 0.00 0.00 37.76 3.02
595 615 9.806203 TTTTGCGAATATGATTTCATTGATCTT 57.194 25.926 0.00 0.00 37.76 2.40
629 649 7.001099 ACCATGAGCATCTTGATTTCTTTTT 57.999 32.000 0.00 0.00 42.34 1.94
630 650 6.600882 ACCATGAGCATCTTGATTTCTTTT 57.399 33.333 0.00 0.00 42.34 2.27
631 651 6.209986 TCAACCATGAGCATCTTGATTTCTTT 59.790 34.615 0.00 0.00 42.34 2.52
632 652 5.713389 TCAACCATGAGCATCTTGATTTCTT 59.287 36.000 0.00 0.00 42.34 2.52
633 653 5.258841 TCAACCATGAGCATCTTGATTTCT 58.741 37.500 0.00 0.00 42.34 2.52
634 654 5.571784 TCAACCATGAGCATCTTGATTTC 57.428 39.130 0.00 0.00 42.34 2.17
647 667 0.400213 AAACTCCCGCTCAACCATGA 59.600 50.000 0.00 0.00 0.00 3.07
648 668 0.523072 CAAACTCCCGCTCAACCATG 59.477 55.000 0.00 0.00 0.00 3.66
649 669 0.110486 ACAAACTCCCGCTCAACCAT 59.890 50.000 0.00 0.00 0.00 3.55
651 671 0.818040 ACACAAACTCCCGCTCAACC 60.818 55.000 0.00 0.00 0.00 3.77
653 673 0.179234 TGACACAAACTCCCGCTCAA 59.821 50.000 0.00 0.00 0.00 3.02
657 677 2.393764 CAATTTGACACAAACTCCCGC 58.606 47.619 0.00 0.00 0.00 6.13
658 678 2.034558 AGCAATTTGACACAAACTCCCG 59.965 45.455 0.00 0.00 0.00 5.14
659 679 3.733443 AGCAATTTGACACAAACTCCC 57.267 42.857 0.00 0.00 0.00 4.30
660 680 4.219033 CGTAGCAATTTGACACAAACTCC 58.781 43.478 0.00 0.00 0.00 3.85
661 681 4.844267 ACGTAGCAATTTGACACAAACTC 58.156 39.130 0.00 0.00 0.00 3.01
662 682 4.893424 ACGTAGCAATTTGACACAAACT 57.107 36.364 0.00 0.00 0.00 2.66
663 683 4.439776 GGAACGTAGCAATTTGACACAAAC 59.560 41.667 0.00 0.00 0.00 2.93
664 684 4.096532 TGGAACGTAGCAATTTGACACAAA 59.903 37.500 0.00 0.00 0.00 2.83
665 685 3.628032 TGGAACGTAGCAATTTGACACAA 59.372 39.130 0.00 0.00 0.00 3.33
666 686 3.206964 TGGAACGTAGCAATTTGACACA 58.793 40.909 0.00 0.00 0.00 3.72
667 687 3.496884 TCTGGAACGTAGCAATTTGACAC 59.503 43.478 0.00 0.00 0.00 3.67
668 688 3.734463 TCTGGAACGTAGCAATTTGACA 58.266 40.909 0.00 0.00 0.00 3.58
669 689 4.742438 TTCTGGAACGTAGCAATTTGAC 57.258 40.909 0.00 0.00 0.00 3.18
670 690 6.093495 CCTTATTCTGGAACGTAGCAATTTGA 59.907 38.462 0.00 0.00 0.00 2.69
671 691 6.128007 ACCTTATTCTGGAACGTAGCAATTTG 60.128 38.462 0.00 0.00 0.00 2.32
675 695 4.546829 ACCTTATTCTGGAACGTAGCAA 57.453 40.909 0.00 0.00 0.00 3.91
676 696 4.546829 AACCTTATTCTGGAACGTAGCA 57.453 40.909 0.00 0.00 0.00 3.49
677 697 4.933400 TGAAACCTTATTCTGGAACGTAGC 59.067 41.667 0.00 0.00 0.00 3.58
678 698 5.929992 TGTGAAACCTTATTCTGGAACGTAG 59.070 40.000 0.00 0.00 34.36 3.51
679 699 5.697633 GTGTGAAACCTTATTCTGGAACGTA 59.302 40.000 0.00 0.00 34.36 3.57
680 700 4.514066 GTGTGAAACCTTATTCTGGAACGT 59.486 41.667 0.00 0.00 34.36 3.99
682 702 5.531287 ACAGTGTGAAACCTTATTCTGGAAC 59.469 40.000 0.00 0.00 34.36 3.62
684 704 5.304686 ACAGTGTGAAACCTTATTCTGGA 57.695 39.130 0.00 0.00 34.36 3.86
685 705 4.152402 CGACAGTGTGAAACCTTATTCTGG 59.848 45.833 0.00 0.00 34.36 3.86
686 706 4.377431 GCGACAGTGTGAAACCTTATTCTG 60.377 45.833 0.00 0.00 34.36 3.02
687 707 3.746492 GCGACAGTGTGAAACCTTATTCT 59.254 43.478 0.00 0.00 34.36 2.40
691 711 2.159014 AGTGCGACAGTGTGAAACCTTA 60.159 45.455 0.00 0.00 34.36 2.69
692 712 1.014352 GTGCGACAGTGTGAAACCTT 58.986 50.000 0.00 0.00 34.36 3.50
693 713 0.178068 AGTGCGACAGTGTGAAACCT 59.822 50.000 0.00 0.00 34.36 3.50
694 714 1.860676 TAGTGCGACAGTGTGAAACC 58.139 50.000 0.00 0.00 34.36 3.27
695 715 3.493129 TGATTAGTGCGACAGTGTGAAAC 59.507 43.478 0.00 0.00 37.35 2.78
696 716 3.493129 GTGATTAGTGCGACAGTGTGAAA 59.507 43.478 0.00 0.00 0.00 2.69
697 717 3.057019 GTGATTAGTGCGACAGTGTGAA 58.943 45.455 0.00 0.00 0.00 3.18
700 720 1.698165 CGTGATTAGTGCGACAGTGT 58.302 50.000 0.00 0.00 0.00 3.55
701 721 0.366871 GCGTGATTAGTGCGACAGTG 59.633 55.000 0.00 0.00 0.00 3.66
702 722 0.243907 AGCGTGATTAGTGCGACAGT 59.756 50.000 0.00 0.00 0.00 3.55
703 723 0.917259 GAGCGTGATTAGTGCGACAG 59.083 55.000 0.00 0.00 0.00 3.51
704 724 0.796870 CGAGCGTGATTAGTGCGACA 60.797 55.000 0.00 0.00 0.00 4.35
705 725 1.910880 CGAGCGTGATTAGTGCGAC 59.089 57.895 0.00 0.00 0.00 5.19
706 726 1.872234 GCGAGCGTGATTAGTGCGA 60.872 57.895 0.00 0.00 0.00 5.10
707 727 2.158330 TGCGAGCGTGATTAGTGCG 61.158 57.895 0.00 0.00 0.00 5.34
708 728 1.345176 GTGCGAGCGTGATTAGTGC 59.655 57.895 0.00 0.00 0.00 4.40
710 730 2.158959 GCGTGCGAGCGTGATTAGT 61.159 57.895 0.00 0.00 0.00 2.24
711 731 2.615618 GCGTGCGAGCGTGATTAG 59.384 61.111 0.00 0.00 0.00 1.73
712 732 2.883730 GGCGTGCGAGCGTGATTA 60.884 61.111 0.00 0.00 38.18 1.75
723 743 4.250431 GTGGTGTGTGTGGCGTGC 62.250 66.667 0.00 0.00 0.00 5.34
724 744 3.582120 GGTGGTGTGTGTGGCGTG 61.582 66.667 0.00 0.00 0.00 5.34
728 748 3.279116 CAGCGGTGGTGTGTGTGG 61.279 66.667 6.74 0.00 0.00 4.17
729 749 3.279116 CCAGCGGTGGTGTGTGTG 61.279 66.667 25.51 0.00 39.30 3.82
738 758 1.375523 GGGACACTAACCAGCGGTG 60.376 63.158 7.86 7.86 35.34 4.94
739 759 1.535687 AGGGACACTAACCAGCGGT 60.536 57.895 0.00 0.00 37.65 5.68
740 760 1.218316 GAGGGACACTAACCAGCGG 59.782 63.158 0.00 0.00 0.00 5.52
741 761 0.608640 AAGAGGGACACTAACCAGCG 59.391 55.000 0.00 0.00 0.00 5.18
742 762 2.861147 AAAGAGGGACACTAACCAGC 57.139 50.000 0.00 0.00 0.00 4.85
743 763 4.351874 TGAAAAGAGGGACACTAACCAG 57.648 45.455 0.00 0.00 0.00 4.00
745 765 4.262617 GGATGAAAAGAGGGACACTAACC 58.737 47.826 0.00 0.00 0.00 2.85
784 1513 0.961019 TGTTCCATTTGGCAGTCAGC 59.039 50.000 0.00 0.00 44.65 4.26
838 1567 1.176527 CCAGCTTACAACCACATGGG 58.823 55.000 2.32 0.00 44.81 4.00
850 1579 1.302192 GGCGAACACCACCAGCTTA 60.302 57.895 0.00 0.00 0.00 3.09
857 1586 3.708734 CCGAACGGCGAACACCAC 61.709 66.667 16.62 0.00 44.57 4.16
916 1645 7.954056 TGCACCCTATATACTAGTAGTTCCATT 59.046 37.037 8.40 0.00 0.00 3.16
917 1646 7.476153 TGCACCCTATATACTAGTAGTTCCAT 58.524 38.462 8.40 0.00 0.00 3.41
918 1647 6.855667 TGCACCCTATATACTAGTAGTTCCA 58.144 40.000 8.40 0.00 0.00 3.53
920 1649 8.460428 GTGATGCACCCTATATACTAGTAGTTC 58.540 40.741 8.40 0.00 0.00 3.01
922 1651 7.467650 TGTGATGCACCCTATATACTAGTAGT 58.532 38.462 8.85 8.14 32.73 2.73
923 1652 7.939784 TGTGATGCACCCTATATACTAGTAG 57.060 40.000 8.85 0.00 32.73 2.57
924 1653 8.113462 TCATGTGATGCACCCTATATACTAGTA 58.887 37.037 4.77 4.77 32.73 1.82
927 1660 7.182060 TCTCATGTGATGCACCCTATATACTA 58.818 38.462 0.00 0.00 32.73 1.82
1341 2088 1.805869 CTGACAGGCTCTCAAAGGTG 58.194 55.000 0.00 0.00 0.00 4.00
1590 2337 4.779733 ATCCGGAGAGGGCGGTGT 62.780 66.667 11.34 0.00 41.52 4.16
1912 2665 2.811431 TGCTCCCAAATGAAACGTACAG 59.189 45.455 0.00 0.00 0.00 2.74
1926 2679 1.686587 CTGTACGTCCATATGCTCCCA 59.313 52.381 0.00 0.00 0.00 4.37
2122 2875 3.195698 GAAGCATCCCACGGACGC 61.196 66.667 0.00 0.00 41.64 5.19
2235 2988 3.640967 CCCACTCCTCCTCTATCAAGAAG 59.359 52.174 0.00 0.00 0.00 2.85
2294 3047 4.475135 GCTCCTCCCCGGTGAAGC 62.475 72.222 0.00 0.00 0.00 3.86
2316 3069 3.923563 GAGCAGCTCGACGCACCTT 62.924 63.158 6.67 0.00 42.61 3.50
2325 3078 1.145598 ATGACCCATGAGCAGCTCG 59.854 57.895 17.81 5.73 32.35 5.03
2379 3132 1.424493 GCGTCATCCCTTTCAGAGCG 61.424 60.000 0.00 0.00 0.00 5.03
2589 3350 3.804873 GTCGACTGAGATTTAGCAATCCC 59.195 47.826 8.70 0.00 39.95 3.85
2610 3371 5.864474 GCGAATATATCATCGACCAAGAAGT 59.136 40.000 10.32 0.00 41.43 3.01
2613 3374 5.385509 TGCGAATATATCATCGACCAAGA 57.614 39.130 10.32 0.00 41.43 3.02
2614 3375 4.564372 CCTGCGAATATATCATCGACCAAG 59.436 45.833 10.32 3.03 41.43 3.61
2615 3376 4.219725 TCCTGCGAATATATCATCGACCAA 59.780 41.667 10.32 0.00 41.43 3.67
2616 3377 3.761752 TCCTGCGAATATATCATCGACCA 59.238 43.478 10.32 0.61 41.43 4.02
2617 3378 4.371855 TCCTGCGAATATATCATCGACC 57.628 45.455 10.32 0.00 41.43 4.79
2631 3690 2.089201 TCTTCACGTAAGATCCTGCGA 58.911 47.619 8.88 0.00 39.36 5.10
2640 3699 2.982846 TTCGCACCGATCTTCACGTAAG 60.983 50.000 0.00 0.00 38.72 2.34
2645 3704 3.471495 AAAATTCGCACCGATCTTCAC 57.529 42.857 0.00 0.00 35.23 3.18
2684 3743 4.436050 GGCGTGAGAAAGTGACATAACATG 60.436 45.833 0.00 0.00 0.00 3.21
2686 3745 3.064207 GGCGTGAGAAAGTGACATAACA 58.936 45.455 0.00 0.00 0.00 2.41
2692 3751 1.654105 CATACGGCGTGAGAAAGTGAC 59.346 52.381 24.86 0.00 0.00 3.67
2693 3752 1.990799 CATACGGCGTGAGAAAGTGA 58.009 50.000 24.86 0.00 0.00 3.41
2694 3753 0.370273 GCATACGGCGTGAGAAAGTG 59.630 55.000 24.86 10.41 0.00 3.16
2695 3754 2.750815 GCATACGGCGTGAGAAAGT 58.249 52.632 24.86 0.00 0.00 2.66
2728 3900 5.963586 GGCAGTAATAAGCAATTAACGTGTC 59.036 40.000 0.00 0.00 31.82 3.67
2738 3910 3.343941 AACGGAGGCAGTAATAAGCAA 57.656 42.857 0.00 0.00 0.00 3.91
2748 3920 1.523758 ACTTGCTAAAACGGAGGCAG 58.476 50.000 0.00 0.00 36.06 4.85
2777 3949 6.544928 TCTAGATGTGAGTTAGCAATTCCA 57.455 37.500 0.00 0.00 0.00 3.53
2827 4001 1.134367 CAGCAGATCGGACGGTTTAGA 59.866 52.381 0.00 0.00 0.00 2.10
2829 4003 0.174845 CCAGCAGATCGGACGGTTTA 59.825 55.000 0.00 0.00 0.00 2.01
2840 4014 6.071221 TGCATGAAAATTAAAGACCAGCAGAT 60.071 34.615 0.00 0.00 0.00 2.90
2841 4015 5.243507 TGCATGAAAATTAAAGACCAGCAGA 59.756 36.000 0.00 0.00 0.00 4.26
2842 4016 5.472148 TGCATGAAAATTAAAGACCAGCAG 58.528 37.500 0.00 0.00 0.00 4.24
2843 4017 5.465532 TGCATGAAAATTAAAGACCAGCA 57.534 34.783 0.00 0.00 0.00 4.41
2844 4018 6.424812 AGTTTGCATGAAAATTAAAGACCAGC 59.575 34.615 1.18 0.00 0.00 4.85
2850 4024 8.231304 ACATCGAGTTTGCATGAAAATTAAAG 57.769 30.769 1.18 0.00 0.00 1.85
2868 4042 2.951745 GGCGAGCGTGACATCGAG 60.952 66.667 10.84 0.00 41.40 4.04
2871 4045 2.887568 CTGGGCGAGCGTGACATC 60.888 66.667 0.00 0.00 0.00 3.06
2929 4103 0.605319 AAACGCGGGCAAGAGATTGA 60.605 50.000 12.47 0.00 0.00 2.57
2932 4106 2.040544 CCAAACGCGGGCAAGAGAT 61.041 57.895 12.47 0.00 0.00 2.75
2933 4107 2.668212 CCAAACGCGGGCAAGAGA 60.668 61.111 12.47 0.00 0.00 3.10
2998 4172 2.927856 AGATCGGCCCACACACCA 60.928 61.111 0.00 0.00 0.00 4.17
3002 4176 1.675641 AAAGCAGATCGGCCCACAC 60.676 57.895 14.56 0.00 0.00 3.82
3003 4177 1.675310 CAAAGCAGATCGGCCCACA 60.675 57.895 14.56 0.00 0.00 4.17
3114 4288 1.523934 GACGGCGGGTAAATATTGACG 59.476 52.381 13.24 0.00 0.00 4.35
3118 4292 0.249996 CCGGACGGCGGGTAAATATT 60.250 55.000 13.24 0.00 0.00 1.28
3130 4304 4.125695 GGTTCTCGGACCGGACGG 62.126 72.222 15.25 9.56 42.03 4.79
3169 4343 1.760479 CTGGGGGTGTTGTCGTACCA 61.760 60.000 0.00 0.00 38.74 3.25
3176 4350 1.817740 CGTTCATTCTGGGGGTGTTGT 60.818 52.381 0.00 0.00 0.00 3.32
3179 4353 0.991920 ATCGTTCATTCTGGGGGTGT 59.008 50.000 0.00 0.00 0.00 4.16
3182 4356 3.380320 GGTTTAATCGTTCATTCTGGGGG 59.620 47.826 0.00 0.00 0.00 5.40
3191 4365 3.998341 GGCAGTAGTGGTTTAATCGTTCA 59.002 43.478 0.00 0.00 0.00 3.18
3192 4366 3.373130 GGGCAGTAGTGGTTTAATCGTTC 59.627 47.826 0.00 0.00 0.00 3.95
3195 4369 1.931172 CGGGCAGTAGTGGTTTAATCG 59.069 52.381 0.00 0.00 0.00 3.34
3224 4398 2.603008 CCTGTAGGGCCAATGGGG 59.397 66.667 6.18 0.00 40.85 4.96
3308 4485 5.751509 AGCAAAAACCGGACTTTTATTTGTC 59.248 36.000 9.46 5.38 0.00 3.18
3310 4487 5.522097 ACAGCAAAAACCGGACTTTTATTTG 59.478 36.000 9.46 13.41 0.00 2.32
3320 4497 1.904287 ATAGCACAGCAAAAACCGGA 58.096 45.000 9.46 0.00 0.00 5.14
3345 4522 2.808543 CTGCTTTTTAGAGTTGACGGCT 59.191 45.455 0.00 0.00 0.00 5.52
3347 4524 5.418310 TTTCTGCTTTTTAGAGTTGACGG 57.582 39.130 0.00 0.00 0.00 4.79
3393 4570 9.771915 GACTTTTTCTTTTCAATCATTGCAAAA 57.228 25.926 1.71 0.00 0.00 2.44
3394 4571 8.944029 TGACTTTTTCTTTTCAATCATTGCAAA 58.056 25.926 1.71 0.00 0.00 3.68
3395 4572 8.489990 TGACTTTTTCTTTTCAATCATTGCAA 57.510 26.923 0.00 0.00 0.00 4.08
3396 4573 8.552865 CATGACTTTTTCTTTTCAATCATTGCA 58.447 29.630 0.00 0.00 0.00 4.08
3397 4574 8.013378 CCATGACTTTTTCTTTTCAATCATTGC 58.987 33.333 0.00 0.00 0.00 3.56
3398 4575 8.013378 GCCATGACTTTTTCTTTTCAATCATTG 58.987 33.333 0.00 0.00 0.00 2.82
3399 4576 7.716123 TGCCATGACTTTTTCTTTTCAATCATT 59.284 29.630 0.00 0.00 0.00 2.57
3400 4577 7.218614 TGCCATGACTTTTTCTTTTCAATCAT 58.781 30.769 0.00 0.00 0.00 2.45
3401 4578 6.580788 TGCCATGACTTTTTCTTTTCAATCA 58.419 32.000 0.00 0.00 0.00 2.57
3402 4579 7.481275 TTGCCATGACTTTTTCTTTTCAATC 57.519 32.000 0.00 0.00 0.00 2.67
3403 4580 8.454570 AATTGCCATGACTTTTTCTTTTCAAT 57.545 26.923 0.00 0.00 0.00 2.57
3404 4581 7.862512 AATTGCCATGACTTTTTCTTTTCAA 57.137 28.000 0.00 0.00 0.00 2.69
3405 4582 7.012232 GGAAATTGCCATGACTTTTTCTTTTCA 59.988 33.333 0.00 0.00 0.00 2.69
3406 4583 7.012232 TGGAAATTGCCATGACTTTTTCTTTTC 59.988 33.333 0.00 0.00 31.66 2.29
3407 4584 6.827762 TGGAAATTGCCATGACTTTTTCTTTT 59.172 30.769 0.00 0.00 31.66 2.27
3408 4585 6.355747 TGGAAATTGCCATGACTTTTTCTTT 58.644 32.000 0.00 0.00 31.66 2.52
3409 4586 5.927819 TGGAAATTGCCATGACTTTTTCTT 58.072 33.333 0.00 0.00 31.66 2.52
3410 4587 5.549742 TGGAAATTGCCATGACTTTTTCT 57.450 34.783 0.00 0.00 31.66 2.52
3419 4596 7.255695 ATGTATGTACAGATGGAAATTGCCATG 60.256 37.037 23.56 13.45 42.24 3.66
3420 4597 6.779049 ATGTATGTACAGATGGAAATTGCCAT 59.221 34.615 18.65 18.65 43.55 4.40
3421 4598 5.504853 TGTATGTACAGATGGAAATTGCCA 58.495 37.500 7.89 7.89 43.23 4.92
3422 4599 6.441274 CATGTATGTACAGATGGAAATTGCC 58.559 40.000 0.33 0.00 39.92 4.52
3423 4600 6.039717 ACCATGTATGTACAGATGGAAATTGC 59.960 38.462 26.62 4.03 38.17 3.56
3424 4601 7.420002 CACCATGTATGTACAGATGGAAATTG 58.580 38.462 26.62 16.03 38.17 2.32
3425 4602 6.547141 CCACCATGTATGTACAGATGGAAATT 59.453 38.462 26.62 10.48 38.17 1.82
3426 4603 6.064060 CCACCATGTATGTACAGATGGAAAT 58.936 40.000 26.62 10.74 38.17 2.17
3427 4604 5.045213 ACCACCATGTATGTACAGATGGAAA 60.045 40.000 26.62 2.16 38.17 3.13
3428 4605 4.473196 ACCACCATGTATGTACAGATGGAA 59.527 41.667 26.62 3.75 38.17 3.53
3429 4606 4.037222 ACCACCATGTATGTACAGATGGA 58.963 43.478 26.62 4.37 38.17 3.41
3430 4607 4.129380 CACCACCATGTATGTACAGATGG 58.871 47.826 21.54 21.54 40.49 3.51
3431 4608 4.129380 CCACCACCATGTATGTACAGATG 58.871 47.826 0.33 3.69 39.92 2.90
3432 4609 4.037222 TCCACCACCATGTATGTACAGAT 58.963 43.478 0.33 0.00 39.92 2.90
3433 4610 3.445987 TCCACCACCATGTATGTACAGA 58.554 45.455 0.33 0.00 39.92 3.41
3434 4611 3.904800 TCCACCACCATGTATGTACAG 57.095 47.619 0.33 0.00 39.92 2.74
3435 4612 4.642466 TTTCCACCACCATGTATGTACA 57.358 40.909 0.00 0.00 40.98 2.90
3436 4613 5.968528 TTTTTCCACCACCATGTATGTAC 57.031 39.130 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.