Multiple sequence alignment - TraesCS2D01G481900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G481900 chr2D 100.000 3264 0 0 517 3780 584606335 584609598 0.000000e+00 6028.0
1 TraesCS2D01G481900 chr2D 99.058 743 5 1 3040 3780 257563437 257564179 0.000000e+00 1332.0
2 TraesCS2D01G481900 chr2D 100.000 276 0 0 1 276 584605819 584606094 9.370000e-141 510.0
3 TraesCS2D01G481900 chr2D 82.543 464 65 14 1752 2206 584657984 584658440 9.840000e-106 394.0
4 TraesCS2D01G481900 chr2D 81.988 483 67 16 1735 2206 584662128 584662601 3.540000e-105 392.0
5 TraesCS2D01G481900 chr2D 95.798 238 4 1 3044 3281 584615415 584615184 2.760000e-101 379.0
6 TraesCS2D01G481900 chr2D 95.359 237 5 1 3045 3281 257570014 257569784 4.610000e-99 372.0
7 TraesCS2D01G481900 chr2D 78.365 587 105 17 1632 2206 584781908 584782484 9.980000e-96 361.0
8 TraesCS2D01G481900 chr2D 91.509 212 18 0 1323 1534 584657541 584657752 3.690000e-75 292.0
9 TraesCS2D01G481900 chr2D 90.000 220 18 1 1343 1562 584661709 584661924 7.990000e-72 281.0
10 TraesCS2D01G481900 chr2D 78.261 483 74 13 1752 2205 594997974 594997494 7.990000e-72 281.0
11 TraesCS2D01G481900 chr2D 83.938 193 31 0 1001 1193 594999282 594999090 6.450000e-43 185.0
12 TraesCS2D01G481900 chr2D 81.818 231 29 9 995 1214 584661344 584661572 8.340000e-42 182.0
13 TraesCS2D01G481900 chr2D 83.249 197 31 2 1020 1215 584668261 584668456 3.000000e-41 180.0
14 TraesCS2D01G481900 chr2B 91.199 1318 90 14 1735 3044 704413121 704414420 0.000000e+00 1768.0
15 TraesCS2D01G481900 chr2B 86.752 702 58 19 919 1602 704412118 704412802 0.000000e+00 749.0
16 TraesCS2D01G481900 chr2B 81.705 481 72 12 1735 2206 704722477 704722950 1.650000e-103 387.0
17 TraesCS2D01G481900 chr2B 79.550 533 90 12 2326 2849 705009197 705009719 2.780000e-96 363.0
18 TraesCS2D01G481900 chr2B 88.235 238 26 2 1298 1534 704722045 704722281 2.220000e-72 283.0
19 TraesCS2D01G481900 chr2B 77.984 486 72 16 1752 2205 704728760 704729242 4.810000e-69 272.0
20 TraesCS2D01G481900 chr2B 89.952 209 21 0 1323 1531 704579977 704580185 1.730000e-68 270.0
21 TraesCS2D01G481900 chr2B 84.100 239 30 7 1735 1970 704580350 704580583 1.370000e-54 224.0
22 TraesCS2D01G481900 chr2B 86.935 199 23 3 2009 2206 704581010 704581206 1.770000e-53 220.0
23 TraesCS2D01G481900 chr2B 84.577 201 29 1 1327 1525 704295667 704295867 8.280000e-47 198.0
24 TraesCS2D01G481900 chr2B 80.889 225 36 3 991 1214 704721665 704721883 1.810000e-38 171.0
25 TraesCS2D01G481900 chr4D 98.780 738 6 2 3044 3779 469136988 469137724 0.000000e+00 1310.0
26 TraesCS2D01G481900 chr4D 97.455 275 6 1 1 275 349414250 349413977 5.720000e-128 468.0
27 TraesCS2D01G481900 chr4D 94.937 237 6 1 3045 3281 469143545 469143315 2.150000e-97 366.0
28 TraesCS2D01G481900 chr6A 93.117 741 46 4 3044 3780 8869427 8870166 0.000000e+00 1081.0
29 TraesCS2D01G481900 chr6A 92.050 239 18 1 3045 3282 8875862 8875624 6.050000e-88 335.0
30 TraesCS2D01G481900 chr2A 86.820 607 49 13 922 1526 718818673 718819250 0.000000e+00 649.0
31 TraesCS2D01G481900 chr2A 77.561 1074 180 41 1752 2783 718838181 718839235 3.250000e-165 592.0
32 TraesCS2D01G481900 chr2A 84.468 573 67 15 2288 2847 718819883 718820446 2.570000e-151 545.0
33 TraesCS2D01G481900 chr2A 76.636 1070 197 39 1735 2776 718884368 718885412 3.320000e-150 542.0
34 TraesCS2D01G481900 chr2A 89.620 395 39 1 2325 2717 718836373 718836767 5.640000e-138 501.0
35 TraesCS2D01G481900 chr2A 87.762 286 34 1 1347 1631 718835420 718835705 2.180000e-87 333.0
36 TraesCS2D01G481900 chr2A 79.477 497 74 18 1757 2229 718835818 718836310 1.010000e-85 327.0
37 TraesCS2D01G481900 chr2A 91.416 233 19 1 1722 1954 718819595 718819826 6.090000e-83 318.0
38 TraesCS2D01G481900 chr2A 90.129 233 20 2 1305 1534 718883936 718884168 2.210000e-77 300.0
39 TraesCS2D01G481900 chr2A 98.305 118 2 0 1020 1137 718834045 718834162 1.380000e-49 207.0
40 TraesCS2D01G481900 chr2A 87.261 157 18 2 1001 1157 718929215 718929369 1.080000e-40 178.0
41 TraesCS2D01G481900 chr2A 83.333 198 25 5 1001 1193 718916822 718917016 3.880000e-40 176.0
42 TraesCS2D01G481900 chr2A 80.392 204 40 0 2331 2534 718730386 718730589 5.060000e-34 156.0
43 TraesCS2D01G481900 chr2A 92.308 78 6 0 2706 2783 718836784 718836861 1.110000e-20 111.0
44 TraesCS2D01G481900 chr3D 97.455 275 7 0 1 275 94229827 94229553 1.590000e-128 470.0
45 TraesCS2D01G481900 chr6D 97.091 275 7 1 1 275 38635301 38635574 2.660000e-126 462.0
46 TraesCS2D01G481900 chr6D 87.817 197 19 5 584 777 68715782 68715976 3.800000e-55 226.0
47 TraesCS2D01G481900 chr6D 87.179 195 22 3 586 778 429079356 429079549 6.360000e-53 219.0
48 TraesCS2D01G481900 chr1D 97.884 189 4 0 1 189 376245857 376245669 1.010000e-85 327.0
49 TraesCS2D01G481900 chr1D 86.528 193 23 3 586 776 393338643 393338834 3.830000e-50 209.0
50 TraesCS2D01G481900 chr5B 86.909 275 32 3 1 275 420854844 420855114 4.740000e-79 305.0
51 TraesCS2D01G481900 chr5B 75.874 286 50 12 1 275 197126146 197125869 1.100000e-25 128.0
52 TraesCS2D01G481900 chr1B 85.563 284 32 4 1 275 35255196 35254913 4.780000e-74 289.0
53 TraesCS2D01G481900 chr1B 93.333 60 4 0 3475 3534 346968277 346968218 5.200000e-14 89.8
54 TraesCS2D01G481900 chr7B 86.512 215 25 4 566 777 672323660 672323447 2.270000e-57 233.0
55 TraesCS2D01G481900 chr7B 86.111 216 26 4 566 778 672344823 672344609 2.940000e-56 230.0
56 TraesCS2D01G481900 chr7B 85.268 224 26 6 547 768 672325301 672325519 1.370000e-54 224.0
57 TraesCS2D01G481900 chr7B 85.514 214 28 3 566 777 672371416 672371204 1.770000e-53 220.0
58 TraesCS2D01G481900 chr7B 84.615 221 29 4 547 765 672281206 672281423 8.220000e-52 215.0
59 TraesCS2D01G481900 chr1A 86.735 196 22 4 586 778 34698594 34698400 8.220000e-52 215.0
60 TraesCS2D01G481900 chr6B 93.103 58 4 0 3475 3532 551805130 551805187 6.730000e-13 86.1
61 TraesCS2D01G481900 chr4A 93.103 58 4 0 3475 3532 42255417 42255474 6.730000e-13 86.1
62 TraesCS2D01G481900 chr3A 89.831 59 5 1 3475 3532 443988464 443988522 1.460000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G481900 chr2D 584605819 584609598 3779 False 3269.000000 6028 100.000000 1 3780 2 chr2D.!!$F4 3779
1 TraesCS2D01G481900 chr2D 257563437 257564179 742 False 1332.000000 1332 99.058000 3040 3780 1 chr2D.!!$F1 740
2 TraesCS2D01G481900 chr2D 584781908 584782484 576 False 361.000000 361 78.365000 1632 2206 1 chr2D.!!$F3 574
3 TraesCS2D01G481900 chr2D 584657541 584662601 5060 False 308.200000 394 85.571600 995 2206 5 chr2D.!!$F5 1211
4 TraesCS2D01G481900 chr2D 594997494 594999282 1788 True 233.000000 281 81.099500 1001 2205 2 chr2D.!!$R3 1204
5 TraesCS2D01G481900 chr2B 704412118 704414420 2302 False 1258.500000 1768 88.975500 919 3044 2 chr2B.!!$F4 2125
6 TraesCS2D01G481900 chr2B 705009197 705009719 522 False 363.000000 363 79.550000 2326 2849 1 chr2B.!!$F3 523
7 TraesCS2D01G481900 chr2B 704721665 704722950 1285 False 280.333333 387 83.609667 991 2206 3 chr2B.!!$F6 1215
8 TraesCS2D01G481900 chr2B 704579977 704581206 1229 False 238.000000 270 86.995667 1323 2206 3 chr2B.!!$F5 883
9 TraesCS2D01G481900 chr4D 469136988 469137724 736 False 1310.000000 1310 98.780000 3044 3779 1 chr4D.!!$F1 735
10 TraesCS2D01G481900 chr6A 8869427 8870166 739 False 1081.000000 1081 93.117000 3044 3780 1 chr6A.!!$F1 736
11 TraesCS2D01G481900 chr2A 718818673 718820446 1773 False 504.000000 649 87.568000 922 2847 3 chr2A.!!$F4 1925
12 TraesCS2D01G481900 chr2A 718883936 718885412 1476 False 421.000000 542 83.382500 1305 2776 2 chr2A.!!$F6 1471
13 TraesCS2D01G481900 chr2A 718834045 718839235 5190 False 345.166667 592 87.505500 1020 2783 6 chr2A.!!$F5 1763

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 908 0.031111 TCCTACTATGCAGCCCCTGT 60.031 55.0 0.0 0.0 33.43 4.00 F
1682 5410 0.165944 CCGTTGACACTTCGGCATTC 59.834 55.0 0.0 0.0 37.90 2.67 F
1812 6106 0.666274 GTGATGAGGTCGTGCGTGAA 60.666 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 11444 0.821517 TAGTCCGCACACCATTCGAT 59.178 50.000 0.00 0.0 0.00 3.59 R
2669 11584 1.476085 CCTGATGAGCTTCTCAGACGT 59.524 52.381 21.68 0.0 44.08 4.34 R
2951 11866 1.679977 CCACTCCCATGCCCAGTTG 60.680 63.158 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.982130 AGCTGACTTACCAGGGCG 59.018 61.111 0.00 0.00 34.82 6.13
18 19 1.609501 AGCTGACTTACCAGGGCGA 60.610 57.895 0.00 0.00 34.82 5.54
19 20 1.448013 GCTGACTTACCAGGGCGAC 60.448 63.158 0.00 0.00 34.82 5.19
20 21 1.889530 GCTGACTTACCAGGGCGACT 61.890 60.000 0.00 0.00 34.82 4.18
21 22 1.471119 CTGACTTACCAGGGCGACTA 58.529 55.000 0.00 0.00 0.00 2.59
22 23 1.134560 CTGACTTACCAGGGCGACTAC 59.865 57.143 0.00 0.00 0.00 2.73
23 24 1.272313 TGACTTACCAGGGCGACTACT 60.272 52.381 0.00 0.00 0.00 2.57
24 25 2.025981 TGACTTACCAGGGCGACTACTA 60.026 50.000 0.00 0.00 0.00 1.82
25 26 3.220940 GACTTACCAGGGCGACTACTAT 58.779 50.000 0.00 0.00 0.00 2.12
26 27 2.957006 ACTTACCAGGGCGACTACTATG 59.043 50.000 0.00 0.00 0.00 2.23
27 28 1.991121 TACCAGGGCGACTACTATGG 58.009 55.000 0.00 0.00 0.00 2.74
28 29 0.260816 ACCAGGGCGACTACTATGGA 59.739 55.000 0.00 0.00 0.00 3.41
29 30 1.133136 ACCAGGGCGACTACTATGGAT 60.133 52.381 0.00 0.00 0.00 3.41
30 31 1.971357 CCAGGGCGACTACTATGGATT 59.029 52.381 0.00 0.00 0.00 3.01
31 32 2.368875 CCAGGGCGACTACTATGGATTT 59.631 50.000 0.00 0.00 0.00 2.17
32 33 3.576982 CCAGGGCGACTACTATGGATTTA 59.423 47.826 0.00 0.00 0.00 1.40
33 34 4.039973 CCAGGGCGACTACTATGGATTTAA 59.960 45.833 0.00 0.00 0.00 1.52
34 35 5.230942 CAGGGCGACTACTATGGATTTAAG 58.769 45.833 0.00 0.00 0.00 1.85
35 36 4.283722 AGGGCGACTACTATGGATTTAAGG 59.716 45.833 0.00 0.00 0.00 2.69
36 37 3.995048 GGCGACTACTATGGATTTAAGGC 59.005 47.826 0.00 0.00 0.00 4.35
37 38 3.673809 GCGACTACTATGGATTTAAGGCG 59.326 47.826 0.00 0.00 38.49 5.52
38 39 4.795308 GCGACTACTATGGATTTAAGGCGT 60.795 45.833 0.00 0.00 37.77 5.68
39 40 5.287226 CGACTACTATGGATTTAAGGCGTT 58.713 41.667 0.00 0.00 30.98 4.84
40 41 5.175126 CGACTACTATGGATTTAAGGCGTTG 59.825 44.000 0.97 0.00 30.98 4.10
41 42 4.814771 ACTACTATGGATTTAAGGCGTTGC 59.185 41.667 0.97 0.00 0.00 4.17
42 43 3.616219 ACTATGGATTTAAGGCGTTGCA 58.384 40.909 0.97 0.00 0.00 4.08
43 44 3.627577 ACTATGGATTTAAGGCGTTGCAG 59.372 43.478 0.97 0.00 0.00 4.41
44 45 2.192664 TGGATTTAAGGCGTTGCAGA 57.807 45.000 0.97 0.00 0.00 4.26
45 46 1.810151 TGGATTTAAGGCGTTGCAGAC 59.190 47.619 0.97 0.00 0.00 3.51
46 47 1.132453 GGATTTAAGGCGTTGCAGACC 59.868 52.381 0.97 0.00 0.00 3.85
47 48 0.802494 ATTTAAGGCGTTGCAGACCG 59.198 50.000 0.97 0.00 0.00 4.79
48 49 0.533308 TTTAAGGCGTTGCAGACCGT 60.533 50.000 0.97 0.93 0.00 4.83
49 50 0.947180 TTAAGGCGTTGCAGACCGTC 60.947 55.000 0.97 0.00 0.00 4.79
54 55 3.998672 GTTGCAGACCGTCGGGGA 61.999 66.667 17.28 0.00 39.97 4.81
55 56 3.691342 TTGCAGACCGTCGGGGAG 61.691 66.667 17.28 5.48 39.97 4.30
58 59 3.141488 CAGACCGTCGGGGAGGAG 61.141 72.222 17.28 0.00 39.97 3.69
59 60 3.336568 AGACCGTCGGGGAGGAGA 61.337 66.667 17.28 0.00 39.97 3.71
60 61 2.829458 GACCGTCGGGGAGGAGAG 60.829 72.222 17.28 0.00 39.97 3.20
61 62 4.444081 ACCGTCGGGGAGGAGAGG 62.444 72.222 17.28 0.00 39.97 3.69
99 100 3.322466 CGAAGGGTGGAGCTGGGT 61.322 66.667 0.00 0.00 0.00 4.51
100 101 2.895424 CGAAGGGTGGAGCTGGGTT 61.895 63.158 0.00 0.00 0.00 4.11
101 102 1.303643 GAAGGGTGGAGCTGGGTTG 60.304 63.158 0.00 0.00 0.00 3.77
102 103 2.771328 GAAGGGTGGAGCTGGGTTGG 62.771 65.000 0.00 0.00 0.00 3.77
103 104 3.256960 GGGTGGAGCTGGGTTGGA 61.257 66.667 0.00 0.00 0.00 3.53
104 105 2.616458 GGGTGGAGCTGGGTTGGAT 61.616 63.158 0.00 0.00 0.00 3.41
105 106 1.379044 GGTGGAGCTGGGTTGGATG 60.379 63.158 0.00 0.00 0.00 3.51
106 107 2.048603 GTGGAGCTGGGTTGGATGC 61.049 63.158 0.00 0.00 0.00 3.91
107 108 2.440980 GGAGCTGGGTTGGATGCC 60.441 66.667 0.00 0.00 0.00 4.40
108 109 2.679716 GAGCTGGGTTGGATGCCT 59.320 61.111 0.00 0.00 0.00 4.75
109 110 1.452833 GAGCTGGGTTGGATGCCTC 60.453 63.158 0.00 0.00 0.00 4.70
110 111 1.919600 GAGCTGGGTTGGATGCCTCT 61.920 60.000 0.00 0.00 0.00 3.69
111 112 1.452833 GCTGGGTTGGATGCCTCTC 60.453 63.158 0.00 0.00 0.00 3.20
112 113 1.225704 CTGGGTTGGATGCCTCTCC 59.774 63.158 0.00 0.00 35.74 3.71
113 114 2.276309 CTGGGTTGGATGCCTCTCCC 62.276 65.000 9.21 9.21 34.12 4.30
114 115 2.597903 GGTTGGATGCCTCTCCCC 59.402 66.667 0.00 0.00 34.12 4.81
115 116 2.190578 GTTGGATGCCTCTCCCCG 59.809 66.667 0.00 0.00 34.12 5.73
116 117 3.089874 TTGGATGCCTCTCCCCGG 61.090 66.667 0.00 0.00 34.12 5.73
117 118 3.634157 TTGGATGCCTCTCCCCGGA 62.634 63.158 0.73 0.00 34.12 5.14
118 119 3.237741 GGATGCCTCTCCCCGGAG 61.238 72.222 0.73 4.21 43.21 4.63
119 120 3.934962 GATGCCTCTCCCCGGAGC 61.935 72.222 0.73 0.00 41.71 4.70
120 121 4.804420 ATGCCTCTCCCCGGAGCA 62.804 66.667 0.73 1.98 41.71 4.26
123 124 4.465446 CCTCTCCCCGGAGCAGGA 62.465 72.222 17.67 0.00 41.71 3.86
124 125 2.123077 CTCTCCCCGGAGCAGGAT 60.123 66.667 0.73 0.00 41.71 3.24
125 126 1.764054 CTCTCCCCGGAGCAGGATT 60.764 63.158 0.73 0.00 41.71 3.01
126 127 1.753368 CTCTCCCCGGAGCAGGATTC 61.753 65.000 0.73 0.00 41.71 2.52
127 128 3.154473 TCCCCGGAGCAGGATTCG 61.154 66.667 0.73 0.00 0.00 3.34
128 129 4.918201 CCCCGGAGCAGGATTCGC 62.918 72.222 0.73 0.00 0.00 4.70
150 151 4.292178 GAGCCGCCGGATCTGGAG 62.292 72.222 25.54 21.06 34.95 3.86
151 152 4.841617 AGCCGCCGGATCTGGAGA 62.842 66.667 25.54 0.00 0.00 3.71
152 153 4.593864 GCCGCCGGATCTGGAGAC 62.594 72.222 25.54 10.15 0.00 3.36
153 154 3.917760 CCGCCGGATCTGGAGACC 61.918 72.222 25.54 5.28 0.00 3.85
154 155 4.271816 CGCCGGATCTGGAGACCG 62.272 72.222 25.54 13.99 45.24 4.79
155 156 4.593864 GCCGGATCTGGAGACCGC 62.594 72.222 25.54 3.46 44.45 5.68
156 157 4.271816 CCGGATCTGGAGACCGCG 62.272 72.222 16.28 0.00 44.45 6.46
157 158 3.518998 CGGATCTGGAGACCGCGT 61.519 66.667 4.92 0.00 40.19 6.01
158 159 2.105128 GGATCTGGAGACCGCGTG 59.895 66.667 4.92 0.00 0.00 5.34
159 160 2.583593 GATCTGGAGACCGCGTGC 60.584 66.667 4.92 0.00 0.00 5.34
160 161 3.069980 GATCTGGAGACCGCGTGCT 62.070 63.158 4.92 0.47 0.00 4.40
161 162 2.945398 GATCTGGAGACCGCGTGCTC 62.945 65.000 14.83 14.83 0.00 4.26
260 261 3.197790 CTGCAACCGCTGGATCCG 61.198 66.667 7.39 3.14 39.64 4.18
537 538 4.488126 CAATATCATTTCGCACCCGATT 57.512 40.909 0.00 0.00 43.97 3.34
538 539 4.466828 CAATATCATTTCGCACCCGATTC 58.533 43.478 0.00 0.00 43.97 2.52
539 540 1.308998 ATCATTTCGCACCCGATTCC 58.691 50.000 0.00 0.00 43.97 3.01
540 541 0.251916 TCATTTCGCACCCGATTCCT 59.748 50.000 0.00 0.00 43.97 3.36
541 542 0.378257 CATTTCGCACCCGATTCCTG 59.622 55.000 0.00 0.00 43.97 3.86
542 543 0.035439 ATTTCGCACCCGATTCCTGT 60.035 50.000 0.00 0.00 43.97 4.00
543 544 0.250553 TTTCGCACCCGATTCCTGTT 60.251 50.000 0.00 0.00 43.97 3.16
544 545 0.672401 TTCGCACCCGATTCCTGTTC 60.672 55.000 0.00 0.00 43.97 3.18
545 546 2.106683 CGCACCCGATTCCTGTTCC 61.107 63.158 0.00 0.00 36.29 3.62
546 547 2.106683 GCACCCGATTCCTGTTCCG 61.107 63.158 0.00 0.00 0.00 4.30
547 548 1.449601 CACCCGATTCCTGTTCCGG 60.450 63.158 0.00 0.00 41.47 5.14
548 549 1.611261 ACCCGATTCCTGTTCCGGA 60.611 57.895 0.00 0.00 44.29 5.14
549 550 1.144057 CCCGATTCCTGTTCCGGAG 59.856 63.158 3.34 0.00 44.29 4.63
565 566 3.951979 CGGAGGAATAAGTTGATGTGC 57.048 47.619 0.00 0.00 0.00 4.57
566 567 3.535561 CGGAGGAATAAGTTGATGTGCT 58.464 45.455 0.00 0.00 0.00 4.40
567 568 3.310774 CGGAGGAATAAGTTGATGTGCTG 59.689 47.826 0.00 0.00 0.00 4.41
568 569 4.517285 GGAGGAATAAGTTGATGTGCTGA 58.483 43.478 0.00 0.00 0.00 4.26
569 570 4.333926 GGAGGAATAAGTTGATGTGCTGAC 59.666 45.833 0.00 0.00 0.00 3.51
570 571 3.935203 AGGAATAAGTTGATGTGCTGACG 59.065 43.478 0.00 0.00 0.00 4.35
571 572 3.684788 GGAATAAGTTGATGTGCTGACGT 59.315 43.478 0.00 0.00 0.00 4.34
572 573 4.436050 GGAATAAGTTGATGTGCTGACGTG 60.436 45.833 0.00 0.00 0.00 4.49
573 574 1.953559 AAGTTGATGTGCTGACGTGT 58.046 45.000 0.00 0.00 0.00 4.49
574 575 1.220529 AGTTGATGTGCTGACGTGTG 58.779 50.000 0.00 0.00 0.00 3.82
575 576 0.235665 GTTGATGTGCTGACGTGTGG 59.764 55.000 0.00 0.00 0.00 4.17
576 577 0.179059 TTGATGTGCTGACGTGTGGT 60.179 50.000 0.00 0.00 0.00 4.16
577 578 0.599991 TGATGTGCTGACGTGTGGTC 60.600 55.000 0.00 0.00 46.27 4.02
578 579 1.291877 GATGTGCTGACGTGTGGTCC 61.292 60.000 0.00 0.00 45.46 4.46
579 580 2.665185 GTGCTGACGTGTGGTCCC 60.665 66.667 0.00 0.00 45.46 4.46
580 581 3.936203 TGCTGACGTGTGGTCCCC 61.936 66.667 0.00 0.00 45.46 4.81
581 582 3.936203 GCTGACGTGTGGTCCCCA 61.936 66.667 0.00 0.00 45.46 4.96
582 583 3.068881 CTGACGTGTGGTCCCCAT 58.931 61.111 0.00 0.00 45.46 4.00
583 584 1.079127 CTGACGTGTGGTCCCCATC 60.079 63.158 0.00 0.00 45.46 3.51
584 585 2.125673 GACGTGTGGTCCCCATCG 60.126 66.667 0.00 8.48 39.90 3.84
585 586 3.659089 GACGTGTGGTCCCCATCGG 62.659 68.421 0.00 0.00 39.90 4.18
586 587 3.702048 CGTGTGGTCCCCATCGGT 61.702 66.667 0.00 0.00 35.28 4.69
587 588 2.267961 GTGTGGTCCCCATCGGTC 59.732 66.667 0.00 0.00 35.28 4.79
588 589 2.203862 TGTGGTCCCCATCGGTCA 60.204 61.111 0.00 0.00 35.28 4.02
589 590 1.843832 TGTGGTCCCCATCGGTCAA 60.844 57.895 0.00 0.00 35.28 3.18
590 591 1.376812 GTGGTCCCCATCGGTCAAC 60.377 63.158 0.00 0.00 35.28 3.18
591 592 1.537889 TGGTCCCCATCGGTCAACT 60.538 57.895 0.00 0.00 0.00 3.16
592 593 1.131303 TGGTCCCCATCGGTCAACTT 61.131 55.000 0.00 0.00 0.00 2.66
593 594 0.906775 GGTCCCCATCGGTCAACTTA 59.093 55.000 0.00 0.00 0.00 2.24
594 595 1.279846 GGTCCCCATCGGTCAACTTAA 59.720 52.381 0.00 0.00 0.00 1.85
595 596 2.092592 GGTCCCCATCGGTCAACTTAAT 60.093 50.000 0.00 0.00 0.00 1.40
596 597 2.943033 GTCCCCATCGGTCAACTTAATG 59.057 50.000 0.00 0.00 0.00 1.90
597 598 2.092646 TCCCCATCGGTCAACTTAATGG 60.093 50.000 0.00 0.00 37.27 3.16
598 599 2.356741 CCCCATCGGTCAACTTAATGGT 60.357 50.000 0.00 0.00 36.04 3.55
599 600 3.118186 CCCCATCGGTCAACTTAATGGTA 60.118 47.826 0.00 0.00 36.04 3.25
600 601 4.519213 CCCATCGGTCAACTTAATGGTAA 58.481 43.478 0.00 0.00 36.04 2.85
601 602 4.944930 CCCATCGGTCAACTTAATGGTAAA 59.055 41.667 0.00 0.00 36.04 2.01
602 603 5.416326 CCCATCGGTCAACTTAATGGTAAAA 59.584 40.000 0.00 0.00 36.04 1.52
603 604 6.096282 CCCATCGGTCAACTTAATGGTAAAAT 59.904 38.462 0.00 0.00 36.04 1.82
604 605 7.283580 CCCATCGGTCAACTTAATGGTAAAATA 59.716 37.037 0.00 0.00 36.04 1.40
605 606 8.679100 CCATCGGTCAACTTAATGGTAAAATAA 58.321 33.333 0.00 0.00 33.66 1.40
625 626 8.748380 AAATAAAATAGAGTTGACTTTGCTGC 57.252 30.769 0.00 0.00 0.00 5.25
626 627 4.773323 AAATAGAGTTGACTTTGCTGCC 57.227 40.909 0.00 0.00 0.00 4.85
627 628 2.928801 TAGAGTTGACTTTGCTGCCA 57.071 45.000 0.00 0.00 0.00 4.92
628 629 2.283145 AGAGTTGACTTTGCTGCCAT 57.717 45.000 0.00 0.00 0.00 4.40
629 630 3.423539 AGAGTTGACTTTGCTGCCATA 57.576 42.857 0.00 0.00 0.00 2.74
630 631 3.960571 AGAGTTGACTTTGCTGCCATAT 58.039 40.909 0.00 0.00 0.00 1.78
631 632 3.944015 AGAGTTGACTTTGCTGCCATATC 59.056 43.478 0.00 0.00 0.00 1.63
632 633 3.689347 AGTTGACTTTGCTGCCATATCA 58.311 40.909 0.00 0.00 0.00 2.15
633 634 3.693085 AGTTGACTTTGCTGCCATATCAG 59.307 43.478 0.00 0.00 37.15 2.90
640 641 3.319135 CTGCCATATCAGCCCTGAC 57.681 57.895 0.00 0.00 43.11 3.51
641 642 0.602106 CTGCCATATCAGCCCTGACG 60.602 60.000 0.00 0.00 43.11 4.35
642 643 1.302033 GCCATATCAGCCCTGACGG 60.302 63.158 0.00 3.41 43.11 4.79
652 653 3.706373 CCTGACGGGTGGGTCCAG 61.706 72.222 0.00 0.00 36.07 3.86
653 654 4.394712 CTGACGGGTGGGTCCAGC 62.395 72.222 10.46 10.46 43.00 4.85
655 656 3.717294 GACGGGTGGGTCCAGCAT 61.717 66.667 19.16 8.00 45.25 3.79
656 657 3.976701 GACGGGTGGGTCCAGCATG 62.977 68.421 19.16 13.45 45.25 4.06
657 658 4.033776 CGGGTGGGTCCAGCATGT 62.034 66.667 19.16 0.00 45.25 3.21
658 659 2.044946 GGGTGGGTCCAGCATGTC 60.045 66.667 19.16 0.23 45.25 3.06
659 660 2.756400 GGTGGGTCCAGCATGTCA 59.244 61.111 13.64 0.00 43.20 3.58
660 661 1.304282 GGTGGGTCCAGCATGTCAT 59.696 57.895 13.64 0.00 43.20 3.06
661 662 0.546122 GGTGGGTCCAGCATGTCATA 59.454 55.000 13.64 0.00 43.20 2.15
662 663 1.064758 GGTGGGTCCAGCATGTCATAA 60.065 52.381 13.64 0.00 43.20 1.90
663 664 2.620367 GGTGGGTCCAGCATGTCATAAA 60.620 50.000 13.64 0.00 43.20 1.40
664 665 2.423538 GTGGGTCCAGCATGTCATAAAC 59.576 50.000 0.00 0.00 0.00 2.01
665 666 1.670811 GGGTCCAGCATGTCATAAACG 59.329 52.381 0.00 0.00 0.00 3.60
666 667 2.356135 GGTCCAGCATGTCATAAACGT 58.644 47.619 0.00 0.00 0.00 3.99
667 668 2.095853 GGTCCAGCATGTCATAAACGTG 59.904 50.000 0.00 0.00 46.01 4.49
668 669 2.742053 GTCCAGCATGTCATAAACGTGT 59.258 45.455 0.00 0.00 45.19 4.49
669 670 3.188460 GTCCAGCATGTCATAAACGTGTT 59.812 43.478 0.00 0.00 45.19 3.32
670 671 3.818210 TCCAGCATGTCATAAACGTGTTT 59.182 39.130 3.21 3.21 45.19 2.83
671 672 4.998033 TCCAGCATGTCATAAACGTGTTTA 59.002 37.500 7.58 7.58 45.19 2.01
672 673 5.470437 TCCAGCATGTCATAAACGTGTTTAA 59.530 36.000 9.06 0.00 45.19 1.52
673 674 6.017026 TCCAGCATGTCATAAACGTGTTTAAA 60.017 34.615 9.06 0.00 45.19 1.52
674 675 6.806249 CCAGCATGTCATAAACGTGTTTAAAT 59.194 34.615 9.06 0.00 45.19 1.40
675 676 7.008266 CCAGCATGTCATAAACGTGTTTAAATC 59.992 37.037 9.06 4.08 45.19 2.17
676 677 6.740905 AGCATGTCATAAACGTGTTTAAATCG 59.259 34.615 9.06 12.04 45.19 3.34
677 678 6.521821 GCATGTCATAAACGTGTTTAAATCGT 59.478 34.615 9.06 13.05 45.19 3.73
678 679 7.252865 GCATGTCATAAACGTGTTTAAATCGTC 60.253 37.037 17.12 8.15 45.19 4.20
679 680 7.410800 TGTCATAAACGTGTTTAAATCGTCT 57.589 32.000 17.12 9.67 38.38 4.18
680 681 8.518151 TGTCATAAACGTGTTTAAATCGTCTA 57.482 30.769 17.12 11.12 38.38 2.59
681 682 8.976471 TGTCATAAACGTGTTTAAATCGTCTAA 58.024 29.630 17.12 9.44 38.38 2.10
682 683 9.796062 GTCATAAACGTGTTTAAATCGTCTAAA 57.204 29.630 17.12 7.73 38.38 1.85
683 684 9.796062 TCATAAACGTGTTTAAATCGTCTAAAC 57.204 29.630 17.12 8.74 38.38 2.01
684 685 9.583530 CATAAACGTGTTTAAATCGTCTAAACA 57.416 29.630 17.12 12.30 43.52 2.83
685 686 9.801714 ATAAACGTGTTTAAATCGTCTAAACAG 57.198 29.630 17.12 12.51 45.29 3.16
687 688 6.219302 CGTGTTTAAATCGTCTAAACAGGT 57.781 37.500 19.44 0.00 45.29 4.00
688 689 6.652245 CGTGTTTAAATCGTCTAAACAGGTT 58.348 36.000 19.44 0.00 45.29 3.50
689 690 7.786114 CGTGTTTAAATCGTCTAAACAGGTTA 58.214 34.615 19.44 0.00 45.29 2.85
690 691 8.437742 CGTGTTTAAATCGTCTAAACAGGTTAT 58.562 33.333 19.44 0.00 45.29 1.89
777 778 5.890424 AAAAATGGTAGTTATGTGGGACG 57.110 39.130 0.00 0.00 0.00 4.79
778 779 4.563140 AAATGGTAGTTATGTGGGACGT 57.437 40.909 0.00 0.00 0.00 4.34
779 780 3.536956 ATGGTAGTTATGTGGGACGTG 57.463 47.619 0.00 0.00 0.00 4.49
780 781 1.551430 TGGTAGTTATGTGGGACGTGG 59.449 52.381 0.00 0.00 0.00 4.94
781 782 1.551883 GGTAGTTATGTGGGACGTGGT 59.448 52.381 0.00 0.00 0.00 4.16
782 783 2.760092 GGTAGTTATGTGGGACGTGGTA 59.240 50.000 0.00 0.00 0.00 3.25
783 784 3.181483 GGTAGTTATGTGGGACGTGGTAG 60.181 52.174 0.00 0.00 0.00 3.18
784 785 2.532843 AGTTATGTGGGACGTGGTAGT 58.467 47.619 0.00 0.00 0.00 2.73
785 786 2.901839 AGTTATGTGGGACGTGGTAGTT 59.098 45.455 0.00 0.00 0.00 2.24
786 787 3.325716 AGTTATGTGGGACGTGGTAGTTT 59.674 43.478 0.00 0.00 0.00 2.66
787 788 2.943036 ATGTGGGACGTGGTAGTTTT 57.057 45.000 0.00 0.00 0.00 2.43
788 789 2.713863 TGTGGGACGTGGTAGTTTTT 57.286 45.000 0.00 0.00 0.00 1.94
809 810 7.389803 TTTTTGTCAATCACTCTCAAGAACA 57.610 32.000 0.00 0.00 0.00 3.18
810 811 7.389803 TTTTGTCAATCACTCTCAAGAACAA 57.610 32.000 0.00 0.00 0.00 2.83
811 812 6.609237 TTGTCAATCACTCTCAAGAACAAG 57.391 37.500 0.00 0.00 0.00 3.16
812 813 5.917462 TGTCAATCACTCTCAAGAACAAGA 58.083 37.500 0.00 0.00 0.00 3.02
813 814 6.348498 TGTCAATCACTCTCAAGAACAAGAA 58.652 36.000 0.00 0.00 0.00 2.52
814 815 6.481313 TGTCAATCACTCTCAAGAACAAGAAG 59.519 38.462 0.00 0.00 0.00 2.85
815 816 6.703607 GTCAATCACTCTCAAGAACAAGAAGA 59.296 38.462 0.00 0.00 0.00 2.87
816 817 6.927936 TCAATCACTCTCAAGAACAAGAAGAG 59.072 38.462 0.00 0.00 0.00 2.85
817 818 5.860941 TCACTCTCAAGAACAAGAAGAGT 57.139 39.130 0.00 0.00 35.81 3.24
818 819 6.961360 TCACTCTCAAGAACAAGAAGAGTA 57.039 37.500 3.25 0.00 33.98 2.59
819 820 6.976088 TCACTCTCAAGAACAAGAAGAGTAG 58.024 40.000 3.25 0.22 33.98 2.57
820 821 6.773200 TCACTCTCAAGAACAAGAAGAGTAGA 59.227 38.462 3.25 2.23 33.98 2.59
821 822 6.861055 CACTCTCAAGAACAAGAAGAGTAGAC 59.139 42.308 3.25 0.00 33.98 2.59
822 823 6.547880 ACTCTCAAGAACAAGAAGAGTAGACA 59.452 38.462 1.68 0.00 33.98 3.41
823 824 6.976088 TCTCAAGAACAAGAAGAGTAGACAG 58.024 40.000 0.00 0.00 0.00 3.51
824 825 5.533482 TCAAGAACAAGAAGAGTAGACAGC 58.467 41.667 0.00 0.00 0.00 4.40
825 826 5.303078 TCAAGAACAAGAAGAGTAGACAGCT 59.697 40.000 0.00 0.00 0.00 4.24
826 827 5.385509 AGAACAAGAAGAGTAGACAGCTC 57.614 43.478 0.00 0.00 0.00 4.09
827 828 4.830046 AGAACAAGAAGAGTAGACAGCTCA 59.170 41.667 0.00 0.00 35.55 4.26
828 829 4.513198 ACAAGAAGAGTAGACAGCTCAC 57.487 45.455 0.00 0.00 35.55 3.51
829 830 3.891977 ACAAGAAGAGTAGACAGCTCACA 59.108 43.478 0.00 0.00 35.55 3.58
830 831 4.342378 ACAAGAAGAGTAGACAGCTCACAA 59.658 41.667 0.00 0.00 35.55 3.33
831 832 4.513198 AGAAGAGTAGACAGCTCACAAC 57.487 45.455 0.00 0.00 35.55 3.32
832 833 3.257127 AGAAGAGTAGACAGCTCACAACC 59.743 47.826 0.00 0.00 35.55 3.77
833 834 1.542030 AGAGTAGACAGCTCACAACCG 59.458 52.381 0.00 0.00 35.55 4.44
834 835 1.540267 GAGTAGACAGCTCACAACCGA 59.460 52.381 0.00 0.00 33.45 4.69
835 836 1.542030 AGTAGACAGCTCACAACCGAG 59.458 52.381 0.00 0.00 36.02 4.63
836 837 1.540267 GTAGACAGCTCACAACCGAGA 59.460 52.381 0.00 0.00 34.79 4.04
837 838 0.315568 AGACAGCTCACAACCGAGAC 59.684 55.000 0.00 0.00 34.79 3.36
838 839 0.032130 GACAGCTCACAACCGAGACA 59.968 55.000 0.00 0.00 34.79 3.41
839 840 0.464036 ACAGCTCACAACCGAGACAA 59.536 50.000 0.00 0.00 34.79 3.18
840 841 1.143305 CAGCTCACAACCGAGACAAG 58.857 55.000 0.00 0.00 34.79 3.16
841 842 0.753262 AGCTCACAACCGAGACAAGT 59.247 50.000 0.00 0.00 34.79 3.16
842 843 1.139058 AGCTCACAACCGAGACAAGTT 59.861 47.619 0.00 0.00 34.79 2.66
843 844 1.261619 GCTCACAACCGAGACAAGTTG 59.738 52.381 0.00 0.00 46.95 3.16
844 845 1.261619 CTCACAACCGAGACAAGTTGC 59.738 52.381 1.81 0.00 45.79 4.17
845 846 1.134521 TCACAACCGAGACAAGTTGCT 60.135 47.619 1.81 0.89 45.79 3.91
846 847 1.670811 CACAACCGAGACAAGTTGCTT 59.329 47.619 1.81 0.00 45.79 3.91
847 848 2.097466 CACAACCGAGACAAGTTGCTTT 59.903 45.455 1.81 0.00 45.79 3.51
848 849 2.097466 ACAACCGAGACAAGTTGCTTTG 59.903 45.455 1.81 5.89 45.79 2.77
849 850 2.325583 ACCGAGACAAGTTGCTTTGA 57.674 45.000 1.81 0.00 0.00 2.69
850 851 2.639065 ACCGAGACAAGTTGCTTTGAA 58.361 42.857 1.81 0.00 0.00 2.69
851 852 2.354821 ACCGAGACAAGTTGCTTTGAAC 59.645 45.455 1.81 0.00 0.00 3.18
852 853 2.599848 CCGAGACAAGTTGCTTTGAACG 60.600 50.000 1.81 1.44 0.00 3.95
853 854 2.284150 CGAGACAAGTTGCTTTGAACGA 59.716 45.455 1.81 0.00 0.00 3.85
854 855 3.059597 CGAGACAAGTTGCTTTGAACGAT 60.060 43.478 1.81 0.00 0.00 3.73
855 856 4.149922 CGAGACAAGTTGCTTTGAACGATA 59.850 41.667 1.81 0.00 0.00 2.92
856 857 5.597813 AGACAAGTTGCTTTGAACGATAG 57.402 39.130 1.81 0.00 46.19 2.08
857 858 4.083802 AGACAAGTTGCTTTGAACGATAGC 60.084 41.667 1.81 0.00 42.67 2.97
858 859 3.815401 ACAAGTTGCTTTGAACGATAGCT 59.185 39.130 1.81 0.00 42.67 3.32
859 860 4.083802 ACAAGTTGCTTTGAACGATAGCTC 60.084 41.667 1.81 0.00 42.67 4.09
860 861 3.664107 AGTTGCTTTGAACGATAGCTCA 58.336 40.909 0.00 0.00 39.87 4.26
861 862 3.681897 AGTTGCTTTGAACGATAGCTCAG 59.318 43.478 0.00 0.00 42.88 3.35
862 863 3.592898 TGCTTTGAACGATAGCTCAGA 57.407 42.857 0.00 0.00 42.88 3.27
863 864 4.128925 TGCTTTGAACGATAGCTCAGAT 57.871 40.909 0.00 0.00 42.88 2.90
864 865 4.115516 TGCTTTGAACGATAGCTCAGATC 58.884 43.478 0.00 0.00 42.88 2.75
865 866 4.142071 TGCTTTGAACGATAGCTCAGATCT 60.142 41.667 0.00 0.00 42.88 2.75
866 867 4.208873 GCTTTGAACGATAGCTCAGATCTG 59.791 45.833 17.07 17.07 42.88 2.90
867 868 3.361794 TGAACGATAGCTCAGATCTGC 57.638 47.619 18.36 7.42 36.05 4.26
868 869 2.689983 TGAACGATAGCTCAGATCTGCA 59.310 45.455 18.36 6.29 36.05 4.41
869 870 3.320256 TGAACGATAGCTCAGATCTGCAT 59.680 43.478 18.36 8.44 36.05 3.96
870 871 4.520492 TGAACGATAGCTCAGATCTGCATA 59.480 41.667 18.36 10.32 36.05 3.14
871 872 5.184671 TGAACGATAGCTCAGATCTGCATAT 59.815 40.000 18.36 14.30 36.05 1.78
872 873 6.375455 TGAACGATAGCTCAGATCTGCATATA 59.625 38.462 18.36 8.29 36.05 0.86
873 874 6.765915 ACGATAGCTCAGATCTGCATATAA 57.234 37.500 18.36 0.00 42.67 0.98
874 875 7.163001 ACGATAGCTCAGATCTGCATATAAA 57.837 36.000 18.36 0.00 42.67 1.40
875 876 7.780064 ACGATAGCTCAGATCTGCATATAAAT 58.220 34.615 18.36 4.86 42.67 1.40
876 877 8.256605 ACGATAGCTCAGATCTGCATATAAATT 58.743 33.333 18.36 0.00 42.67 1.82
877 878 9.741647 CGATAGCTCAGATCTGCATATAAATTA 57.258 33.333 18.36 0.00 0.00 1.40
901 902 9.582431 TTATATTATCGTTTCCTACTATGCAGC 57.418 33.333 0.00 0.00 0.00 5.25
902 903 2.596904 TCGTTTCCTACTATGCAGCC 57.403 50.000 0.00 0.00 0.00 4.85
903 904 1.138266 TCGTTTCCTACTATGCAGCCC 59.862 52.381 0.00 0.00 0.00 5.19
904 905 1.810412 CGTTTCCTACTATGCAGCCCC 60.810 57.143 0.00 0.00 0.00 5.80
905 906 1.490910 GTTTCCTACTATGCAGCCCCT 59.509 52.381 0.00 0.00 0.00 4.79
906 907 1.131638 TTCCTACTATGCAGCCCCTG 58.868 55.000 0.00 0.00 34.12 4.45
907 908 0.031111 TCCTACTATGCAGCCCCTGT 60.031 55.000 0.00 0.00 33.43 4.00
908 909 0.394565 CCTACTATGCAGCCCCTGTC 59.605 60.000 0.00 0.00 33.43 3.51
909 910 1.123077 CTACTATGCAGCCCCTGTCA 58.877 55.000 0.00 0.00 33.43 3.58
910 911 1.069823 CTACTATGCAGCCCCTGTCAG 59.930 57.143 0.00 0.00 33.43 3.51
911 912 0.911525 ACTATGCAGCCCCTGTCAGT 60.912 55.000 0.00 0.00 33.43 3.41
912 913 0.463295 CTATGCAGCCCCTGTCAGTG 60.463 60.000 0.00 0.00 33.43 3.66
913 914 1.200760 TATGCAGCCCCTGTCAGTGT 61.201 55.000 0.00 0.00 33.43 3.55
914 915 2.359230 GCAGCCCCTGTCAGTGTC 60.359 66.667 0.00 0.00 33.43 3.67
915 916 2.047844 CAGCCCCTGTCAGTGTCG 60.048 66.667 0.00 0.00 0.00 4.35
916 917 2.524394 AGCCCCTGTCAGTGTCGT 60.524 61.111 0.00 0.00 0.00 4.34
917 918 2.357517 GCCCCTGTCAGTGTCGTG 60.358 66.667 0.00 0.00 0.00 4.35
918 919 3.138625 CCCCTGTCAGTGTCGTGT 58.861 61.111 0.00 0.00 0.00 4.49
919 920 1.300931 CCCCTGTCAGTGTCGTGTG 60.301 63.158 0.00 0.00 0.00 3.82
920 921 1.956170 CCCTGTCAGTGTCGTGTGC 60.956 63.158 0.00 0.00 0.00 4.57
921 922 1.956170 CCTGTCAGTGTCGTGTGCC 60.956 63.158 0.00 0.00 0.00 5.01
922 923 1.227234 CTGTCAGTGTCGTGTGCCA 60.227 57.895 0.00 0.00 0.00 4.92
923 924 0.809636 CTGTCAGTGTCGTGTGCCAA 60.810 55.000 0.00 0.00 0.00 4.52
924 925 1.087202 TGTCAGTGTCGTGTGCCAAC 61.087 55.000 0.00 0.00 0.00 3.77
925 926 1.087202 GTCAGTGTCGTGTGCCAACA 61.087 55.000 0.00 0.00 0.00 3.33
930 931 1.063488 GTCGTGTGCCAACAACCAC 59.937 57.895 0.00 0.00 38.27 4.16
933 934 3.609703 TGTGCCAACAACCACACC 58.390 55.556 0.00 0.00 37.07 4.16
940 941 1.597742 CAACAACCACACCAGAGGAG 58.402 55.000 0.00 0.00 0.00 3.69
955 956 1.079750 GGAGCGACCTGACAACCTC 60.080 63.158 0.00 0.00 35.41 3.85
971 972 1.633852 CCTCTGTGCTTGAAGCGAGC 61.634 60.000 13.05 6.02 46.26 5.03
989 990 0.246086 GCTGAGCTAGGGGATCATCG 59.754 60.000 0.00 0.00 39.76 3.84
999 1000 2.592861 GATCATCGGTGCCCAGCC 60.593 66.667 0.00 0.00 0.00 4.85
1137 1138 1.971695 CCCCGGTTGGCTTCTTGTC 60.972 63.158 0.00 0.00 0.00 3.18
1228 1591 4.625607 AGGTTCTTCCTGGTTTAGTCTG 57.374 45.455 0.00 0.00 46.19 3.51
1244 4786 3.285484 AGTCTGTCCATCATGATTTGCC 58.715 45.455 5.16 0.00 0.00 4.52
1251 4793 4.402155 GTCCATCATGATTTGCCTGGTAAA 59.598 41.667 12.38 12.38 32.57 2.01
1252 4794 4.646040 TCCATCATGATTTGCCTGGTAAAG 59.354 41.667 15.11 2.50 32.57 1.85
1253 4795 4.403432 CCATCATGATTTGCCTGGTAAAGT 59.597 41.667 15.11 4.40 0.00 2.66
1254 4796 5.450965 CCATCATGATTTGCCTGGTAAAGTC 60.451 44.000 15.11 12.36 0.00 3.01
1312 4925 8.723942 AACATGTATAGTTTTGATCTCAGTCC 57.276 34.615 0.00 0.00 0.00 3.85
1318 4931 3.652869 AGTTTTGATCTCAGTCCCCAAGA 59.347 43.478 0.00 0.00 0.00 3.02
1335 4948 5.046529 CCCAAGATACGTCTCTGAAGATTG 58.953 45.833 3.99 0.00 32.15 2.67
1337 4950 6.183360 CCCAAGATACGTCTCTGAAGATTGTA 60.183 42.308 3.99 0.00 32.15 2.41
1534 5149 2.840651 CCTGAGGTAAACACCCATCTCT 59.159 50.000 0.00 0.00 0.00 3.10
1536 5151 4.656112 CCTGAGGTAAACACCCATCTCTAT 59.344 45.833 0.00 0.00 0.00 1.98
1558 5181 1.876156 CTCCAGCAAGCTTCGTTTTCT 59.124 47.619 0.00 0.00 0.00 2.52
1562 5185 3.487207 CCAGCAAGCTTCGTTTTCTTTTC 59.513 43.478 0.00 0.00 0.00 2.29
1571 5194 5.388786 GCTTCGTTTTCTTTTCCATGATTGC 60.389 40.000 0.00 0.00 0.00 3.56
1577 5204 5.787953 TTCTTTTCCATGATTGCTGTTCA 57.212 34.783 0.00 0.00 0.00 3.18
1579 5206 4.828939 TCTTTTCCATGATTGCTGTTCAGT 59.171 37.500 0.00 0.00 0.00 3.41
1583 5210 4.338012 TCCATGATTGCTGTTCAGTCATT 58.662 39.130 0.00 0.00 46.07 2.57
1594 5229 5.675575 GCTGTTCAGTCATTTGATGGTGATC 60.676 44.000 1.78 0.00 0.00 2.92
1605 5241 2.301583 TGATGGTGATCGAGTTGTTGGA 59.698 45.455 0.00 0.00 0.00 3.53
1607 5243 2.766313 TGGTGATCGAGTTGTTGGAAG 58.234 47.619 0.00 0.00 0.00 3.46
1610 5246 4.202274 TGGTGATCGAGTTGTTGGAAGTTA 60.202 41.667 0.00 0.00 0.00 2.24
1643 5324 6.867662 AATTATTCCAAGCCATAGAAGACG 57.132 37.500 0.00 0.00 0.00 4.18
1651 5332 1.270358 GCCATAGAAGACGTGGGATCC 60.270 57.143 1.92 1.92 33.58 3.36
1672 5354 1.153127 TTCACCCCACCGTTGACAC 60.153 57.895 0.00 0.00 0.00 3.67
1682 5410 0.165944 CCGTTGACACTTCGGCATTC 59.834 55.000 0.00 0.00 37.90 2.67
1695 5431 3.186909 TCGGCATTCGATAACTCAACTG 58.813 45.455 0.00 0.00 43.74 3.16
1746 6036 8.051901 ACTAAATTATTAGGCTTGGTGTTCAC 57.948 34.615 0.00 0.00 42.39 3.18
1747 6037 5.560966 AATTATTAGGCTTGGTGTTCACG 57.439 39.130 0.00 0.00 0.00 4.35
1750 6044 0.753867 TAGGCTTGGTGTTCACGTGA 59.246 50.000 15.76 15.76 0.00 4.35
1767 6061 2.095008 CGTGACAGAGGGATATGATCGG 60.095 54.545 0.00 0.00 0.00 4.18
1812 6106 0.666274 GTGATGAGGTCGTGCGTGAA 60.666 55.000 0.00 0.00 0.00 3.18
1919 6213 1.679305 GAGAGCTCCTGGTCCGACA 60.679 63.158 10.93 0.00 41.26 4.35
2206 11088 1.051812 CCCTGTTGACTGGTGAGAGT 58.948 55.000 6.35 0.00 33.63 3.24
2223 11106 3.604582 AGAGTGGCTTGCATTTCTCTAC 58.395 45.455 0.00 0.00 31.73 2.59
2226 11109 2.484264 GTGGCTTGCATTTCTCTACGTT 59.516 45.455 0.00 0.00 0.00 3.99
2285 11181 1.410004 TGTCCCGTGTTCTTCTGACT 58.590 50.000 0.00 0.00 0.00 3.41
2315 11215 1.016130 CACGGATGGTGTCTGTCTGC 61.016 60.000 0.00 0.00 44.70 4.26
2537 11440 5.347620 AGAAGTACCCGCAATACAACATA 57.652 39.130 0.00 0.00 0.00 2.29
2541 11444 6.821031 AGTACCCGCAATACAACATAAAAA 57.179 33.333 0.00 0.00 0.00 1.94
2547 11450 6.695278 CCCGCAATACAACATAAAAATCGAAT 59.305 34.615 0.00 0.00 0.00 3.34
2551 11454 8.320295 GCAATACAACATAAAAATCGAATGGTG 58.680 33.333 9.91 9.91 42.70 4.17
2556 11459 2.346099 AAAAATCGAATGGTGTGCGG 57.654 45.000 0.00 0.00 0.00 5.69
2560 11463 0.821517 ATCGAATGGTGTGCGGACTA 59.178 50.000 8.99 0.00 0.00 2.59
2571 11474 5.538813 TGGTGTGCGGACTATCTATCTAAAT 59.461 40.000 8.99 0.00 0.00 1.40
2669 11584 1.806461 GAGGCCGAGAGTGTGTGTGA 61.806 60.000 0.00 0.00 0.00 3.58
2687 11602 2.095008 GTGACGTCTGAGAAGCTCATCA 60.095 50.000 17.92 0.00 39.92 3.07
2783 11698 3.416156 GGGATTCTGCCCTATTGATGTC 58.584 50.000 0.00 0.00 45.12 3.06
2788 11703 2.840038 TCTGCCCTATTGATGTCTGTGT 59.160 45.455 0.00 0.00 0.00 3.72
2789 11704 3.118629 TCTGCCCTATTGATGTCTGTGTC 60.119 47.826 0.00 0.00 0.00 3.67
2790 11705 2.571202 TGCCCTATTGATGTCTGTGTCA 59.429 45.455 0.00 0.00 0.00 3.58
2791 11706 3.201290 GCCCTATTGATGTCTGTGTCAG 58.799 50.000 0.00 0.00 0.00 3.51
2792 11707 3.369892 GCCCTATTGATGTCTGTGTCAGT 60.370 47.826 0.00 0.00 32.61 3.41
2793 11708 4.836825 CCCTATTGATGTCTGTGTCAGTT 58.163 43.478 0.00 0.00 32.61 3.16
2794 11709 5.626809 GCCCTATTGATGTCTGTGTCAGTTA 60.627 44.000 0.00 0.00 32.61 2.24
2795 11710 5.812642 CCCTATTGATGTCTGTGTCAGTTAC 59.187 44.000 0.00 0.00 32.61 2.50
2909 11824 2.930826 TTCCTCCCTCGCATTTATCC 57.069 50.000 0.00 0.00 0.00 2.59
2937 11852 0.472471 TCACTTCGTTTTCCTGGCCT 59.528 50.000 3.32 0.00 0.00 5.19
2947 11862 2.754658 CCTGGCCTCGACCGTAGT 60.755 66.667 3.32 0.00 0.00 2.73
2948 11863 2.490217 CTGGCCTCGACCGTAGTG 59.510 66.667 3.32 0.00 0.00 2.74
2949 11864 3.064987 CTGGCCTCGACCGTAGTGG 62.065 68.421 3.32 0.00 46.41 4.00
2950 11865 3.834799 GGCCTCGACCGTAGTGGG 61.835 72.222 0.00 0.00 44.64 4.61
2951 11866 4.509737 GCCTCGACCGTAGTGGGC 62.510 72.222 2.48 3.16 45.45 5.36
3018 11933 7.920682 AGTAGATTTTGGTTTGTTGTTGTCATC 59.079 33.333 0.00 0.00 0.00 2.92
3026 11941 1.875514 TGTTGTTGTCATCAGAGCAGC 59.124 47.619 0.00 0.00 0.00 5.25
3544 12460 2.032550 CGTACGGTATGATTCGTCACCT 59.967 50.000 7.57 0.00 40.31 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.609501 TCGCCCTGGTAAGTCAGCT 60.610 57.895 0.00 0.00 33.64 4.24
4 5 1.472188 AGTAGTCGCCCTGGTAAGTC 58.528 55.000 0.00 0.00 0.00 3.01
7 8 2.091720 TCCATAGTAGTCGCCCTGGTAA 60.092 50.000 0.00 0.00 0.00 2.85
8 9 1.496001 TCCATAGTAGTCGCCCTGGTA 59.504 52.381 0.00 0.00 0.00 3.25
9 10 0.260816 TCCATAGTAGTCGCCCTGGT 59.739 55.000 0.00 0.00 0.00 4.00
11 12 3.753294 AAATCCATAGTAGTCGCCCTG 57.247 47.619 0.00 0.00 0.00 4.45
12 13 4.283722 CCTTAAATCCATAGTAGTCGCCCT 59.716 45.833 0.00 0.00 0.00 5.19
13 14 4.566987 CCTTAAATCCATAGTAGTCGCCC 58.433 47.826 0.00 0.00 0.00 6.13
14 15 3.995048 GCCTTAAATCCATAGTAGTCGCC 59.005 47.826 0.00 0.00 0.00 5.54
15 16 3.673809 CGCCTTAAATCCATAGTAGTCGC 59.326 47.826 0.00 0.00 0.00 5.19
16 17 4.868067 ACGCCTTAAATCCATAGTAGTCG 58.132 43.478 0.00 0.00 0.00 4.18
17 18 5.050295 GCAACGCCTTAAATCCATAGTAGTC 60.050 44.000 0.00 0.00 0.00 2.59
18 19 4.814771 GCAACGCCTTAAATCCATAGTAGT 59.185 41.667 0.00 0.00 0.00 2.73
19 20 4.814234 TGCAACGCCTTAAATCCATAGTAG 59.186 41.667 0.00 0.00 0.00 2.57
20 21 4.771903 TGCAACGCCTTAAATCCATAGTA 58.228 39.130 0.00 0.00 0.00 1.82
21 22 3.616219 TGCAACGCCTTAAATCCATAGT 58.384 40.909 0.00 0.00 0.00 2.12
22 23 3.876914 TCTGCAACGCCTTAAATCCATAG 59.123 43.478 0.00 0.00 0.00 2.23
23 24 3.625764 GTCTGCAACGCCTTAAATCCATA 59.374 43.478 0.00 0.00 0.00 2.74
24 25 2.423538 GTCTGCAACGCCTTAAATCCAT 59.576 45.455 0.00 0.00 0.00 3.41
25 26 1.810151 GTCTGCAACGCCTTAAATCCA 59.190 47.619 0.00 0.00 0.00 3.41
26 27 1.132453 GGTCTGCAACGCCTTAAATCC 59.868 52.381 0.00 0.00 0.00 3.01
27 28 1.202031 CGGTCTGCAACGCCTTAAATC 60.202 52.381 0.00 0.00 0.00 2.17
28 29 0.802494 CGGTCTGCAACGCCTTAAAT 59.198 50.000 0.00 0.00 0.00 1.40
29 30 0.533308 ACGGTCTGCAACGCCTTAAA 60.533 50.000 5.19 0.00 0.00 1.52
30 31 0.947180 GACGGTCTGCAACGCCTTAA 60.947 55.000 0.00 0.00 0.00 1.85
31 32 1.373748 GACGGTCTGCAACGCCTTA 60.374 57.895 0.00 0.00 0.00 2.69
32 33 2.665185 GACGGTCTGCAACGCCTT 60.665 61.111 0.00 0.00 0.00 4.35
37 38 3.934391 CTCCCCGACGGTCTGCAAC 62.934 68.421 13.94 0.00 0.00 4.17
38 39 3.691342 CTCCCCGACGGTCTGCAA 61.691 66.667 13.94 0.00 0.00 4.08
41 42 3.141488 CTCCTCCCCGACGGTCTG 61.141 72.222 13.94 0.80 0.00 3.51
42 43 3.336568 TCTCCTCCCCGACGGTCT 61.337 66.667 13.94 0.00 0.00 3.85
43 44 2.829458 CTCTCCTCCCCGACGGTC 60.829 72.222 13.94 0.00 0.00 4.79
44 45 4.444081 CCTCTCCTCCCCGACGGT 62.444 72.222 13.94 0.00 0.00 4.83
76 77 4.452733 CTCCACCCTTCGGACCGC 62.453 72.222 9.66 0.00 0.00 5.68
77 78 4.452733 GCTCCACCCTTCGGACCG 62.453 72.222 7.84 7.84 0.00 4.79
78 79 3.003763 AGCTCCACCCTTCGGACC 61.004 66.667 0.00 0.00 0.00 4.46
79 80 2.266055 CAGCTCCACCCTTCGGAC 59.734 66.667 0.00 0.00 0.00 4.79
80 81 3.003173 CCAGCTCCACCCTTCGGA 61.003 66.667 0.00 0.00 0.00 4.55
81 82 4.101448 CCCAGCTCCACCCTTCGG 62.101 72.222 0.00 0.00 0.00 4.30
82 83 2.895424 AACCCAGCTCCACCCTTCG 61.895 63.158 0.00 0.00 0.00 3.79
83 84 1.303643 CAACCCAGCTCCACCCTTC 60.304 63.158 0.00 0.00 0.00 3.46
84 85 2.845345 CCAACCCAGCTCCACCCTT 61.845 63.158 0.00 0.00 0.00 3.95
85 86 3.260100 CCAACCCAGCTCCACCCT 61.260 66.667 0.00 0.00 0.00 4.34
86 87 2.616458 ATCCAACCCAGCTCCACCC 61.616 63.158 0.00 0.00 0.00 4.61
87 88 1.379044 CATCCAACCCAGCTCCACC 60.379 63.158 0.00 0.00 0.00 4.61
88 89 2.048603 GCATCCAACCCAGCTCCAC 61.049 63.158 0.00 0.00 0.00 4.02
89 90 2.356278 GCATCCAACCCAGCTCCA 59.644 61.111 0.00 0.00 0.00 3.86
90 91 2.440980 GGCATCCAACCCAGCTCC 60.441 66.667 0.00 0.00 0.00 4.70
91 92 1.452833 GAGGCATCCAACCCAGCTC 60.453 63.158 0.00 0.00 0.00 4.09
92 93 1.919600 GAGAGGCATCCAACCCAGCT 61.920 60.000 0.00 0.00 0.00 4.24
93 94 1.452833 GAGAGGCATCCAACCCAGC 60.453 63.158 0.00 0.00 0.00 4.85
94 95 1.225704 GGAGAGGCATCCAACCCAG 59.774 63.158 0.00 0.00 39.34 4.45
95 96 2.308722 GGGAGAGGCATCCAACCCA 61.309 63.158 17.10 0.00 41.52 4.51
96 97 2.597903 GGGAGAGGCATCCAACCC 59.402 66.667 9.47 9.47 41.52 4.11
97 98 2.597903 GGGGAGAGGCATCCAACC 59.402 66.667 10.50 0.00 41.52 3.77
98 99 2.190578 CGGGGAGAGGCATCCAAC 59.809 66.667 10.50 2.75 41.52 3.77
99 100 3.089874 CCGGGGAGAGGCATCCAA 61.090 66.667 10.50 0.00 41.52 3.53
100 101 4.088351 TCCGGGGAGAGGCATCCA 62.088 66.667 0.00 0.00 41.52 3.41
101 102 3.237741 CTCCGGGGAGAGGCATCC 61.238 72.222 9.15 0.32 44.53 3.51
102 103 3.934962 GCTCCGGGGAGAGGCATC 61.935 72.222 18.75 0.00 44.53 3.91
103 104 4.804420 TGCTCCGGGGAGAGGCAT 62.804 66.667 18.75 0.00 44.53 4.40
106 107 3.765257 ATCCTGCTCCGGGGAGAGG 62.765 68.421 18.75 19.01 44.53 3.69
107 108 1.753368 GAATCCTGCTCCGGGGAGAG 61.753 65.000 18.75 11.84 44.53 3.20
108 109 1.762460 GAATCCTGCTCCGGGGAGA 60.762 63.158 18.75 0.00 44.53 3.71
109 110 2.825264 GAATCCTGCTCCGGGGAG 59.175 66.667 4.80 10.44 44.56 4.30
110 111 3.154473 CGAATCCTGCTCCGGGGA 61.154 66.667 4.80 1.38 35.96 4.81
111 112 4.918201 GCGAATCCTGCTCCGGGG 62.918 72.222 0.00 0.00 0.00 5.73
133 134 4.292178 CTCCAGATCCGGCGGCTC 62.292 72.222 23.83 22.52 0.00 4.70
134 135 4.841617 TCTCCAGATCCGGCGGCT 62.842 66.667 23.83 13.03 0.00 5.52
135 136 4.593864 GTCTCCAGATCCGGCGGC 62.594 72.222 23.83 8.50 0.00 6.53
136 137 3.917760 GGTCTCCAGATCCGGCGG 61.918 72.222 22.51 22.51 0.00 6.13
137 138 4.271816 CGGTCTCCAGATCCGGCG 62.272 72.222 0.00 0.00 40.49 6.46
138 139 4.593864 GCGGTCTCCAGATCCGGC 62.594 72.222 15.10 7.48 43.77 6.13
139 140 4.271816 CGCGGTCTCCAGATCCGG 62.272 72.222 15.10 0.00 43.77 5.14
140 141 3.518998 ACGCGGTCTCCAGATCCG 61.519 66.667 12.47 11.18 45.94 4.18
141 142 2.105128 CACGCGGTCTCCAGATCC 59.895 66.667 12.47 0.00 0.00 3.36
142 143 2.583593 GCACGCGGTCTCCAGATC 60.584 66.667 12.47 0.00 0.00 2.75
143 144 3.069980 GAGCACGCGGTCTCCAGAT 62.070 63.158 12.47 0.00 36.68 2.90
144 145 3.749064 GAGCACGCGGTCTCCAGA 61.749 66.667 12.47 0.00 36.68 3.86
243 244 3.197790 CGGATCCAGCGGTTGCAG 61.198 66.667 13.41 0.00 46.23 4.41
516 517 4.466828 GAATCGGGTGCGAAATGATATTG 58.533 43.478 0.00 0.00 0.00 1.90
517 518 3.502211 GGAATCGGGTGCGAAATGATATT 59.498 43.478 0.00 0.00 0.00 1.28
518 519 3.074412 GGAATCGGGTGCGAAATGATAT 58.926 45.455 0.00 0.00 0.00 1.63
519 520 2.104111 AGGAATCGGGTGCGAAATGATA 59.896 45.455 0.00 0.00 0.00 2.15
520 521 1.134098 AGGAATCGGGTGCGAAATGAT 60.134 47.619 0.00 0.00 0.00 2.45
521 522 0.251916 AGGAATCGGGTGCGAAATGA 59.748 50.000 0.00 0.00 0.00 2.57
522 523 0.378257 CAGGAATCGGGTGCGAAATG 59.622 55.000 0.00 0.00 0.00 2.32
523 524 0.035439 ACAGGAATCGGGTGCGAAAT 60.035 50.000 0.00 0.00 0.00 2.17
524 525 0.250553 AACAGGAATCGGGTGCGAAA 60.251 50.000 0.00 0.00 0.00 3.46
525 526 0.672401 GAACAGGAATCGGGTGCGAA 60.672 55.000 0.00 0.00 0.00 4.70
526 527 1.079405 GAACAGGAATCGGGTGCGA 60.079 57.895 0.00 0.00 0.00 5.10
527 528 2.106683 GGAACAGGAATCGGGTGCG 61.107 63.158 0.00 0.00 0.00 5.34
528 529 2.106683 CGGAACAGGAATCGGGTGC 61.107 63.158 0.00 0.00 0.00 5.01
529 530 1.449601 CCGGAACAGGAATCGGGTG 60.450 63.158 0.00 0.00 38.93 4.61
530 531 1.611261 TCCGGAACAGGAATCGGGT 60.611 57.895 0.00 0.00 42.44 5.28
531 532 1.144057 CTCCGGAACAGGAATCGGG 59.856 63.158 5.23 0.00 42.44 5.14
532 533 1.144057 CCTCCGGAACAGGAATCGG 59.856 63.158 5.23 0.00 40.25 4.18
533 534 0.535335 TTCCTCCGGAACAGGAATCG 59.465 55.000 17.42 0.00 43.84 3.34
537 538 2.829023 ACTTATTCCTCCGGAACAGGA 58.171 47.619 5.23 6.16 45.07 3.86
538 539 3.055385 TCAACTTATTCCTCCGGAACAGG 60.055 47.826 5.23 3.22 45.07 4.00
539 540 4.202245 TCAACTTATTCCTCCGGAACAG 57.798 45.455 5.23 0.00 45.07 3.16
540 541 4.019681 ACATCAACTTATTCCTCCGGAACA 60.020 41.667 5.23 0.00 45.07 3.18
541 542 4.332819 CACATCAACTTATTCCTCCGGAAC 59.667 45.833 5.23 0.00 45.07 3.62
542 543 4.513442 CACATCAACTTATTCCTCCGGAA 58.487 43.478 5.23 0.00 46.39 4.30
543 544 3.681594 GCACATCAACTTATTCCTCCGGA 60.682 47.826 2.93 2.93 0.00 5.14
544 545 2.614057 GCACATCAACTTATTCCTCCGG 59.386 50.000 0.00 0.00 0.00 5.14
545 546 3.310774 CAGCACATCAACTTATTCCTCCG 59.689 47.826 0.00 0.00 0.00 4.63
546 547 4.333926 GTCAGCACATCAACTTATTCCTCC 59.666 45.833 0.00 0.00 0.00 4.30
547 548 4.033358 CGTCAGCACATCAACTTATTCCTC 59.967 45.833 0.00 0.00 0.00 3.71
548 549 3.935203 CGTCAGCACATCAACTTATTCCT 59.065 43.478 0.00 0.00 0.00 3.36
549 550 3.684788 ACGTCAGCACATCAACTTATTCC 59.315 43.478 0.00 0.00 0.00 3.01
550 551 4.152402 ACACGTCAGCACATCAACTTATTC 59.848 41.667 0.00 0.00 0.00 1.75
551 552 4.065088 ACACGTCAGCACATCAACTTATT 58.935 39.130 0.00 0.00 0.00 1.40
552 553 3.433274 CACACGTCAGCACATCAACTTAT 59.567 43.478 0.00 0.00 0.00 1.73
553 554 2.799978 CACACGTCAGCACATCAACTTA 59.200 45.455 0.00 0.00 0.00 2.24
554 555 1.599071 CACACGTCAGCACATCAACTT 59.401 47.619 0.00 0.00 0.00 2.66
555 556 1.220529 CACACGTCAGCACATCAACT 58.779 50.000 0.00 0.00 0.00 3.16
556 557 0.235665 CCACACGTCAGCACATCAAC 59.764 55.000 0.00 0.00 0.00 3.18
557 558 0.179059 ACCACACGTCAGCACATCAA 60.179 50.000 0.00 0.00 0.00 2.57
558 559 0.599991 GACCACACGTCAGCACATCA 60.600 55.000 0.00 0.00 41.54 3.07
559 560 1.291877 GGACCACACGTCAGCACATC 61.292 60.000 0.00 0.00 43.95 3.06
560 561 1.301716 GGACCACACGTCAGCACAT 60.302 57.895 0.00 0.00 43.95 3.21
561 562 2.108157 GGACCACACGTCAGCACA 59.892 61.111 0.00 0.00 43.95 4.57
562 563 2.665185 GGGACCACACGTCAGCAC 60.665 66.667 0.00 0.00 43.95 4.40
575 576 2.773993 TTAAGTTGACCGATGGGGAC 57.226 50.000 0.00 0.00 39.97 4.46
576 577 2.092646 CCATTAAGTTGACCGATGGGGA 60.093 50.000 0.00 0.00 39.97 4.81
577 578 2.297701 CCATTAAGTTGACCGATGGGG 58.702 52.381 0.00 0.00 43.62 4.96
578 579 2.999331 ACCATTAAGTTGACCGATGGG 58.001 47.619 5.74 0.00 41.18 4.00
579 580 6.503589 TTTTACCATTAAGTTGACCGATGG 57.496 37.500 0.00 0.00 42.28 3.51
599 600 9.196552 GCAGCAAAGTCAACTCTATTTTATTTT 57.803 29.630 0.00 0.00 0.00 1.82
600 601 7.814587 GGCAGCAAAGTCAACTCTATTTTATTT 59.185 33.333 0.00 0.00 0.00 1.40
601 602 7.039784 TGGCAGCAAAGTCAACTCTATTTTATT 60.040 33.333 0.00 0.00 0.00 1.40
602 603 6.434028 TGGCAGCAAAGTCAACTCTATTTTAT 59.566 34.615 0.00 0.00 0.00 1.40
603 604 5.767665 TGGCAGCAAAGTCAACTCTATTTTA 59.232 36.000 0.00 0.00 0.00 1.52
604 605 4.584325 TGGCAGCAAAGTCAACTCTATTTT 59.416 37.500 0.00 0.00 0.00 1.82
605 606 4.144297 TGGCAGCAAAGTCAACTCTATTT 58.856 39.130 0.00 0.00 0.00 1.40
606 607 3.754965 TGGCAGCAAAGTCAACTCTATT 58.245 40.909 0.00 0.00 0.00 1.73
607 608 3.423539 TGGCAGCAAAGTCAACTCTAT 57.576 42.857 0.00 0.00 0.00 1.98
608 609 2.928801 TGGCAGCAAAGTCAACTCTA 57.071 45.000 0.00 0.00 0.00 2.43
609 610 2.283145 ATGGCAGCAAAGTCAACTCT 57.717 45.000 0.00 0.00 0.00 3.24
610 611 3.691118 TGATATGGCAGCAAAGTCAACTC 59.309 43.478 0.00 0.00 0.00 3.01
611 612 3.689347 TGATATGGCAGCAAAGTCAACT 58.311 40.909 0.00 0.00 0.00 3.16
612 613 4.025015 CTGATATGGCAGCAAAGTCAAC 57.975 45.455 0.00 0.00 0.00 3.18
622 623 0.602106 CGTCAGGGCTGATATGGCAG 60.602 60.000 0.00 0.00 42.18 4.85
623 624 1.447217 CGTCAGGGCTGATATGGCA 59.553 57.895 0.00 0.00 42.18 4.92
624 625 1.302033 CCGTCAGGGCTGATATGGC 60.302 63.158 0.00 0.00 42.18 4.40
635 636 3.706373 CTGGACCCACCCGTCAGG 61.706 72.222 0.00 0.00 43.78 3.86
636 637 4.394712 GCTGGACCCACCCGTCAG 62.395 72.222 0.00 0.00 38.00 3.51
638 639 3.717294 ATGCTGGACCCACCCGTC 61.717 66.667 0.00 0.00 38.00 4.79
639 640 4.033776 CATGCTGGACCCACCCGT 62.034 66.667 0.00 0.00 38.00 5.28
640 641 3.976701 GACATGCTGGACCCACCCG 62.977 68.421 0.00 0.00 38.00 5.28
641 642 2.044946 GACATGCTGGACCCACCC 60.045 66.667 0.00 0.00 38.00 4.61
642 643 0.546122 TATGACATGCTGGACCCACC 59.454 55.000 0.00 0.00 39.54 4.61
643 644 2.418368 TTATGACATGCTGGACCCAC 57.582 50.000 0.00 0.00 0.00 4.61
644 645 2.722094 GTTTATGACATGCTGGACCCA 58.278 47.619 0.00 0.00 0.00 4.51
645 646 1.670811 CGTTTATGACATGCTGGACCC 59.329 52.381 0.00 0.00 0.00 4.46
646 647 2.095853 CACGTTTATGACATGCTGGACC 59.904 50.000 0.00 0.00 0.00 4.46
647 648 2.742053 ACACGTTTATGACATGCTGGAC 59.258 45.455 0.00 0.00 0.00 4.02
648 649 3.052455 ACACGTTTATGACATGCTGGA 57.948 42.857 0.00 0.00 0.00 3.86
649 650 3.829886 AACACGTTTATGACATGCTGG 57.170 42.857 0.00 0.00 0.00 4.85
650 651 7.252962 CGATTTAAACACGTTTATGACATGCTG 60.253 37.037 3.35 0.00 35.27 4.41
651 652 6.740905 CGATTTAAACACGTTTATGACATGCT 59.259 34.615 3.35 0.00 35.27 3.79
652 653 6.521821 ACGATTTAAACACGTTTATGACATGC 59.478 34.615 13.87 0.00 36.91 4.06
653 654 7.955324 AGACGATTTAAACACGTTTATGACATG 59.045 33.333 18.51 0.00 40.29 3.21
654 655 8.025243 AGACGATTTAAACACGTTTATGACAT 57.975 30.769 18.51 0.00 40.29 3.06
655 656 7.410800 AGACGATTTAAACACGTTTATGACA 57.589 32.000 18.51 0.00 40.29 3.58
656 657 9.796062 TTTAGACGATTTAAACACGTTTATGAC 57.204 29.630 18.51 8.72 40.29 3.06
657 658 9.796062 GTTTAGACGATTTAAACACGTTTATGA 57.204 29.630 18.51 9.77 39.58 2.15
658 659 9.583530 TGTTTAGACGATTTAAACACGTTTATG 57.416 29.630 18.51 0.00 42.76 1.90
659 660 9.801714 CTGTTTAGACGATTTAAACACGTTTAT 57.198 29.630 18.51 12.46 42.76 1.40
660 661 8.274939 CCTGTTTAGACGATTTAAACACGTTTA 58.725 33.333 18.51 15.35 42.76 2.01
661 662 7.127686 CCTGTTTAGACGATTTAAACACGTTT 58.872 34.615 18.51 16.10 42.76 3.60
662 663 6.258507 ACCTGTTTAGACGATTTAAACACGTT 59.741 34.615 18.51 12.79 42.76 3.99
663 664 5.754890 ACCTGTTTAGACGATTTAAACACGT 59.245 36.000 17.84 17.84 42.76 4.49
664 665 6.219302 ACCTGTTTAGACGATTTAAACACG 57.781 37.500 14.90 12.82 42.76 4.49
755 756 5.182380 CACGTCCCACATAACTACCATTTTT 59.818 40.000 0.00 0.00 0.00 1.94
756 757 4.698304 CACGTCCCACATAACTACCATTTT 59.302 41.667 0.00 0.00 0.00 1.82
757 758 4.258543 CACGTCCCACATAACTACCATTT 58.741 43.478 0.00 0.00 0.00 2.32
758 759 3.370103 CCACGTCCCACATAACTACCATT 60.370 47.826 0.00 0.00 0.00 3.16
759 760 2.169769 CCACGTCCCACATAACTACCAT 59.830 50.000 0.00 0.00 0.00 3.55
760 761 1.551430 CCACGTCCCACATAACTACCA 59.449 52.381 0.00 0.00 0.00 3.25
761 762 1.551883 ACCACGTCCCACATAACTACC 59.448 52.381 0.00 0.00 0.00 3.18
762 763 3.445096 ACTACCACGTCCCACATAACTAC 59.555 47.826 0.00 0.00 0.00 2.73
763 764 3.700538 ACTACCACGTCCCACATAACTA 58.299 45.455 0.00 0.00 0.00 2.24
764 765 2.532843 ACTACCACGTCCCACATAACT 58.467 47.619 0.00 0.00 0.00 2.24
765 766 3.323751 AACTACCACGTCCCACATAAC 57.676 47.619 0.00 0.00 0.00 1.89
766 767 4.354893 AAAACTACCACGTCCCACATAA 57.645 40.909 0.00 0.00 0.00 1.90
767 768 4.354893 AAAAACTACCACGTCCCACATA 57.645 40.909 0.00 0.00 0.00 2.29
768 769 2.943036 AAAACTACCACGTCCCACAT 57.057 45.000 0.00 0.00 0.00 3.21
769 770 2.713863 AAAAACTACCACGTCCCACA 57.286 45.000 0.00 0.00 0.00 4.17
785 786 7.389803 TGTTCTTGAGAGTGATTGACAAAAA 57.610 32.000 0.00 0.00 0.00 1.94
786 787 7.336679 TCTTGTTCTTGAGAGTGATTGACAAAA 59.663 33.333 0.00 0.00 0.00 2.44
787 788 6.823182 TCTTGTTCTTGAGAGTGATTGACAAA 59.177 34.615 0.00 0.00 0.00 2.83
788 789 6.348498 TCTTGTTCTTGAGAGTGATTGACAA 58.652 36.000 0.00 0.00 0.00 3.18
789 790 5.917462 TCTTGTTCTTGAGAGTGATTGACA 58.083 37.500 0.00 0.00 0.00 3.58
790 791 6.703607 TCTTCTTGTTCTTGAGAGTGATTGAC 59.296 38.462 0.00 0.00 0.00 3.18
791 792 6.820335 TCTTCTTGTTCTTGAGAGTGATTGA 58.180 36.000 0.00 0.00 0.00 2.57
792 793 6.705381 ACTCTTCTTGTTCTTGAGAGTGATTG 59.295 38.462 3.74 0.00 34.39 2.67
793 794 6.825610 ACTCTTCTTGTTCTTGAGAGTGATT 58.174 36.000 3.74 0.00 34.39 2.57
794 795 6.418057 ACTCTTCTTGTTCTTGAGAGTGAT 57.582 37.500 3.74 0.00 34.39 3.06
795 796 5.860941 ACTCTTCTTGTTCTTGAGAGTGA 57.139 39.130 3.74 0.00 34.39 3.41
796 797 6.861055 GTCTACTCTTCTTGTTCTTGAGAGTG 59.139 42.308 13.02 5.25 36.66 3.51
797 798 6.547880 TGTCTACTCTTCTTGTTCTTGAGAGT 59.452 38.462 9.04 9.04 38.49 3.24
798 799 6.976088 TGTCTACTCTTCTTGTTCTTGAGAG 58.024 40.000 0.00 0.00 0.00 3.20
799 800 6.515862 GCTGTCTACTCTTCTTGTTCTTGAGA 60.516 42.308 0.00 0.00 0.00 3.27
800 801 5.633182 GCTGTCTACTCTTCTTGTTCTTGAG 59.367 44.000 0.00 0.00 0.00 3.02
801 802 5.303078 AGCTGTCTACTCTTCTTGTTCTTGA 59.697 40.000 0.00 0.00 0.00 3.02
802 803 5.537188 AGCTGTCTACTCTTCTTGTTCTTG 58.463 41.667 0.00 0.00 0.00 3.02
803 804 5.303078 TGAGCTGTCTACTCTTCTTGTTCTT 59.697 40.000 0.00 0.00 35.12 2.52
804 805 4.830046 TGAGCTGTCTACTCTTCTTGTTCT 59.170 41.667 0.00 0.00 35.12 3.01
805 806 4.920927 GTGAGCTGTCTACTCTTCTTGTTC 59.079 45.833 0.00 0.00 35.12 3.18
806 807 4.342378 TGTGAGCTGTCTACTCTTCTTGTT 59.658 41.667 0.00 0.00 35.12 2.83
807 808 3.891977 TGTGAGCTGTCTACTCTTCTTGT 59.108 43.478 0.00 0.00 35.12 3.16
808 809 4.511617 TGTGAGCTGTCTACTCTTCTTG 57.488 45.455 0.00 0.00 35.12 3.02
809 810 4.262249 GGTTGTGAGCTGTCTACTCTTCTT 60.262 45.833 0.00 0.00 35.12 2.52
810 811 3.257127 GGTTGTGAGCTGTCTACTCTTCT 59.743 47.826 0.00 0.00 35.12 2.85
811 812 3.580731 GGTTGTGAGCTGTCTACTCTTC 58.419 50.000 0.00 0.00 35.12 2.87
812 813 2.029828 CGGTTGTGAGCTGTCTACTCTT 60.030 50.000 0.00 0.00 35.12 2.85
813 814 1.542030 CGGTTGTGAGCTGTCTACTCT 59.458 52.381 0.00 0.00 35.12 3.24
814 815 1.540267 TCGGTTGTGAGCTGTCTACTC 59.460 52.381 0.00 0.00 34.62 2.59
815 816 1.542030 CTCGGTTGTGAGCTGTCTACT 59.458 52.381 0.00 0.00 0.00 2.57
816 817 1.540267 TCTCGGTTGTGAGCTGTCTAC 59.460 52.381 0.00 0.00 35.90 2.59
817 818 1.540267 GTCTCGGTTGTGAGCTGTCTA 59.460 52.381 0.00 0.00 35.90 2.59
818 819 0.315568 GTCTCGGTTGTGAGCTGTCT 59.684 55.000 0.00 0.00 35.90 3.41
819 820 0.032130 TGTCTCGGTTGTGAGCTGTC 59.968 55.000 0.00 0.00 35.90 3.51
820 821 0.464036 TTGTCTCGGTTGTGAGCTGT 59.536 50.000 0.00 0.00 35.90 4.40
821 822 1.143305 CTTGTCTCGGTTGTGAGCTG 58.857 55.000 0.00 0.00 35.90 4.24
822 823 0.753262 ACTTGTCTCGGTTGTGAGCT 59.247 50.000 0.00 0.00 35.90 4.09
823 824 1.261619 CAACTTGTCTCGGTTGTGAGC 59.738 52.381 0.00 0.00 38.27 4.26
824 825 1.261619 GCAACTTGTCTCGGTTGTGAG 59.738 52.381 0.00 0.00 43.07 3.51
825 826 1.134521 AGCAACTTGTCTCGGTTGTGA 60.135 47.619 0.00 0.00 43.07 3.58
826 827 1.299541 AGCAACTTGTCTCGGTTGTG 58.700 50.000 0.00 0.00 43.07 3.33
827 828 2.038387 AAGCAACTTGTCTCGGTTGT 57.962 45.000 0.00 0.00 43.07 3.32
828 829 2.354510 TCAAAGCAACTTGTCTCGGTTG 59.645 45.455 0.00 0.00 43.71 3.77
829 830 2.639065 TCAAAGCAACTTGTCTCGGTT 58.361 42.857 0.00 0.00 0.00 4.44
830 831 2.325583 TCAAAGCAACTTGTCTCGGT 57.674 45.000 0.00 0.00 0.00 4.69
831 832 2.599848 CGTTCAAAGCAACTTGTCTCGG 60.600 50.000 0.00 0.00 0.00 4.63
832 833 2.284150 TCGTTCAAAGCAACTTGTCTCG 59.716 45.455 0.00 0.00 0.00 4.04
833 834 3.944422 TCGTTCAAAGCAACTTGTCTC 57.056 42.857 0.00 0.00 0.00 3.36
834 835 4.083802 GCTATCGTTCAAAGCAACTTGTCT 60.084 41.667 0.00 0.00 36.26 3.41
835 836 4.083802 AGCTATCGTTCAAAGCAACTTGTC 60.084 41.667 0.00 0.00 38.75 3.18
836 837 3.815401 AGCTATCGTTCAAAGCAACTTGT 59.185 39.130 0.00 0.00 38.75 3.16
837 838 4.083855 TGAGCTATCGTTCAAAGCAACTTG 60.084 41.667 0.00 0.00 38.75 3.16
838 839 4.065088 TGAGCTATCGTTCAAAGCAACTT 58.935 39.130 0.00 0.00 38.75 2.66
839 840 3.664107 TGAGCTATCGTTCAAAGCAACT 58.336 40.909 0.00 0.00 38.75 3.16
840 841 3.679980 TCTGAGCTATCGTTCAAAGCAAC 59.320 43.478 0.00 0.00 38.75 4.17
841 842 3.925379 TCTGAGCTATCGTTCAAAGCAA 58.075 40.909 0.00 0.00 38.75 3.91
842 843 3.592898 TCTGAGCTATCGTTCAAAGCA 57.407 42.857 0.00 0.00 38.75 3.91
843 844 4.208873 CAGATCTGAGCTATCGTTCAAAGC 59.791 45.833 18.34 0.00 36.48 3.51
844 845 4.208873 GCAGATCTGAGCTATCGTTCAAAG 59.791 45.833 27.04 0.00 29.66 2.77
845 846 4.115516 GCAGATCTGAGCTATCGTTCAAA 58.884 43.478 27.04 0.00 29.66 2.69
846 847 3.131046 TGCAGATCTGAGCTATCGTTCAA 59.869 43.478 27.04 0.00 29.66 2.69
847 848 2.689983 TGCAGATCTGAGCTATCGTTCA 59.310 45.455 27.04 7.53 0.00 3.18
848 849 3.361794 TGCAGATCTGAGCTATCGTTC 57.638 47.619 27.04 4.87 0.00 3.95
849 850 5.657826 ATATGCAGATCTGAGCTATCGTT 57.342 39.130 27.04 2.20 0.00 3.85
850 851 6.765915 TTATATGCAGATCTGAGCTATCGT 57.234 37.500 27.04 10.84 0.00 3.73
851 852 8.645730 AATTTATATGCAGATCTGAGCTATCG 57.354 34.615 27.04 0.00 0.00 2.92
875 876 9.582431 GCTGCATAGTAGGAAACGATAATATAA 57.418 33.333 0.00 0.00 0.00 0.98
876 877 8.195436 GGCTGCATAGTAGGAAACGATAATATA 58.805 37.037 0.50 0.00 0.00 0.86
877 878 7.042335 GGCTGCATAGTAGGAAACGATAATAT 58.958 38.462 0.50 0.00 0.00 1.28
878 879 6.395629 GGCTGCATAGTAGGAAACGATAATA 58.604 40.000 0.50 0.00 0.00 0.98
879 880 5.238583 GGCTGCATAGTAGGAAACGATAAT 58.761 41.667 0.50 0.00 0.00 1.28
880 881 4.502604 GGGCTGCATAGTAGGAAACGATAA 60.503 45.833 0.50 0.00 0.00 1.75
881 882 3.006537 GGGCTGCATAGTAGGAAACGATA 59.993 47.826 0.50 0.00 0.00 2.92
882 883 2.224305 GGGCTGCATAGTAGGAAACGAT 60.224 50.000 0.50 0.00 0.00 3.73
883 884 1.138266 GGGCTGCATAGTAGGAAACGA 59.862 52.381 0.50 0.00 0.00 3.85
884 885 1.583054 GGGCTGCATAGTAGGAAACG 58.417 55.000 0.50 0.00 0.00 3.60
885 886 1.490910 AGGGGCTGCATAGTAGGAAAC 59.509 52.381 0.50 0.00 0.00 2.78
886 887 1.490490 CAGGGGCTGCATAGTAGGAAA 59.510 52.381 0.50 0.00 0.00 3.13
887 888 1.131638 CAGGGGCTGCATAGTAGGAA 58.868 55.000 0.50 0.00 0.00 3.36
888 889 0.031111 ACAGGGGCTGCATAGTAGGA 60.031 55.000 0.50 0.00 34.37 2.94
889 890 0.394565 GACAGGGGCTGCATAGTAGG 59.605 60.000 0.50 0.00 34.37 3.18
890 891 1.069823 CTGACAGGGGCTGCATAGTAG 59.930 57.143 0.50 0.00 34.37 2.57
891 892 1.123077 CTGACAGGGGCTGCATAGTA 58.877 55.000 0.50 0.00 34.37 1.82
892 893 0.911525 ACTGACAGGGGCTGCATAGT 60.912 55.000 7.51 0.00 34.37 2.12
893 894 0.463295 CACTGACAGGGGCTGCATAG 60.463 60.000 7.51 0.00 34.37 2.23
894 895 1.200760 ACACTGACAGGGGCTGCATA 61.201 55.000 10.07 0.00 34.37 3.14
895 896 2.353958 CACTGACAGGGGCTGCAT 59.646 61.111 7.51 0.00 34.37 3.96
896 897 3.170672 ACACTGACAGGGGCTGCA 61.171 61.111 10.07 0.00 34.37 4.41
897 898 2.359230 GACACTGACAGGGGCTGC 60.359 66.667 10.07 0.00 34.37 5.25
898 899 2.047844 CGACACTGACAGGGGCTG 60.048 66.667 9.38 0.00 37.52 4.85
899 900 2.524394 ACGACACTGACAGGGGCT 60.524 61.111 9.38 0.00 0.00 5.19
900 901 2.357517 CACGACACTGACAGGGGC 60.358 66.667 10.07 4.70 0.00 5.80
901 902 1.300931 CACACGACACTGACAGGGG 60.301 63.158 10.07 2.14 0.00 4.79
902 903 1.956170 GCACACGACACTGACAGGG 60.956 63.158 2.23 2.23 0.00 4.45
903 904 1.956170 GGCACACGACACTGACAGG 60.956 63.158 7.51 0.00 0.00 4.00
904 905 0.809636 TTGGCACACGACACTGACAG 60.810 55.000 0.00 0.00 39.29 3.51
905 906 1.087202 GTTGGCACACGACACTGACA 61.087 55.000 0.00 0.00 39.29 3.58
906 907 1.087202 TGTTGGCACACGACACTGAC 61.087 55.000 0.00 0.00 38.57 3.51
907 908 0.391793 TTGTTGGCACACGACACTGA 60.392 50.000 0.00 0.00 43.15 3.41
908 909 0.248054 GTTGTTGGCACACGACACTG 60.248 55.000 12.43 0.00 43.15 3.66
909 910 1.373590 GGTTGTTGGCACACGACACT 61.374 55.000 16.63 0.00 43.15 3.55
910 911 1.063488 GGTTGTTGGCACACGACAC 59.937 57.895 16.63 1.23 43.15 3.67
911 912 1.377333 TGGTTGTTGGCACACGACA 60.377 52.632 16.63 4.51 41.76 4.35
912 913 1.063488 GTGGTTGTTGGCACACGAC 59.937 57.895 10.09 10.09 39.29 4.34
913 914 1.377333 TGTGGTTGTTGGCACACGA 60.377 52.632 0.00 0.00 39.29 4.35
914 915 1.226547 GTGTGGTTGTTGGCACACG 60.227 57.895 0.00 0.00 39.29 4.49
915 916 1.140804 GGTGTGGTTGTTGGCACAC 59.859 57.895 0.00 0.00 44.94 3.82
916 917 1.304464 TGGTGTGGTTGTTGGCACA 60.304 52.632 0.00 0.00 33.88 4.57
917 918 1.034838 TCTGGTGTGGTTGTTGGCAC 61.035 55.000 0.00 0.00 0.00 5.01
918 919 0.751277 CTCTGGTGTGGTTGTTGGCA 60.751 55.000 0.00 0.00 0.00 4.92
919 920 1.455383 CCTCTGGTGTGGTTGTTGGC 61.455 60.000 0.00 0.00 0.00 4.52
920 921 0.182537 TCCTCTGGTGTGGTTGTTGG 59.817 55.000 0.00 0.00 0.00 3.77
921 922 1.597742 CTCCTCTGGTGTGGTTGTTG 58.402 55.000 0.00 0.00 0.00 3.33
922 923 0.179018 GCTCCTCTGGTGTGGTTGTT 60.179 55.000 0.00 0.00 0.00 2.83
923 924 1.451936 GCTCCTCTGGTGTGGTTGT 59.548 57.895 0.00 0.00 0.00 3.32
924 925 1.669115 CGCTCCTCTGGTGTGGTTG 60.669 63.158 0.00 0.00 0.00 3.77
925 926 1.837051 TCGCTCCTCTGGTGTGGTT 60.837 57.895 0.00 0.00 0.00 3.67
930 931 1.979155 TCAGGTCGCTCCTCTGGTG 60.979 63.158 0.00 0.00 46.24 4.17
933 934 0.389166 GTTGTCAGGTCGCTCCTCTG 60.389 60.000 0.00 0.00 46.24 3.35
940 941 0.946221 CACAGAGGTTGTCAGGTCGC 60.946 60.000 0.00 0.00 38.16 5.19
955 956 0.947660 TCAGCTCGCTTCAAGCACAG 60.948 55.000 10.73 5.57 42.58 3.66
971 972 0.894141 CCGATGATCCCCTAGCTCAG 59.106 60.000 0.00 0.00 0.00 3.35
999 1000 4.592192 ATCTCGCCGGCCGACATG 62.592 66.667 30.73 11.36 41.89 3.21
1137 1138 8.093927 AGACAAGAAAGAACTAGAAATGAGGAG 58.906 37.037 0.00 0.00 0.00 3.69
1218 1512 6.678900 GCAAATCATGATGGACAGACTAAACC 60.679 42.308 9.46 0.00 0.00 3.27
1228 1591 2.381911 ACCAGGCAAATCATGATGGAC 58.618 47.619 15.97 10.86 38.88 4.02
1244 4786 2.613977 CCTGCCTGACTGACTTTACCAG 60.614 54.545 0.00 0.00 37.64 4.00
1251 4793 0.036022 GCTTTCCTGCCTGACTGACT 59.964 55.000 0.00 0.00 0.00 3.41
1252 4794 0.036022 AGCTTTCCTGCCTGACTGAC 59.964 55.000 0.00 0.00 0.00 3.51
1253 4795 0.767375 AAGCTTTCCTGCCTGACTGA 59.233 50.000 0.00 0.00 0.00 3.41
1254 4796 0.879765 CAAGCTTTCCTGCCTGACTG 59.120 55.000 0.00 0.00 0.00 3.51
1312 4925 4.927978 ATCTTCAGAGACGTATCTTGGG 57.072 45.455 10.61 0.00 34.34 4.12
1354 4969 5.044624 TGAGATGGGAATTCTTCTCCATGTT 60.045 40.000 16.02 6.69 39.35 2.71
1374 4989 1.230635 GCGCTTGCAAGTCCTTGAGA 61.231 55.000 26.55 0.00 42.93 3.27
1506 5121 2.633488 GTGTTTACCTCAGGATCTGCC 58.367 52.381 0.00 0.00 0.00 4.85
1558 5181 4.583907 TGACTGAACAGCAATCATGGAAAA 59.416 37.500 1.46 0.00 0.00 2.29
1562 5185 4.713824 AATGACTGAACAGCAATCATGG 57.286 40.909 1.46 0.00 30.53 3.66
1571 5194 5.446875 CGATCACCATCAAATGACTGAACAG 60.447 44.000 0.00 0.00 0.00 3.16
1577 5204 4.478206 ACTCGATCACCATCAAATGACT 57.522 40.909 0.00 0.00 0.00 3.41
1579 5206 4.578871 ACAACTCGATCACCATCAAATGA 58.421 39.130 0.00 0.00 0.00 2.57
1583 5210 3.073678 CCAACAACTCGATCACCATCAA 58.926 45.455 0.00 0.00 0.00 2.57
1594 5229 5.744666 TTTTCCTAACTTCCAACAACTCG 57.255 39.130 0.00 0.00 0.00 4.18
1629 5310 1.568504 TCCCACGTCTTCTATGGCTT 58.431 50.000 0.00 0.00 31.66 4.35
1643 5324 1.303282 GGGGTGAACAGGATCCCAC 59.697 63.158 8.55 9.23 41.51 4.61
1651 5332 1.147376 TCAACGGTGGGGTGAACAG 59.853 57.895 0.00 0.00 0.00 3.16
1682 5410 1.710013 ACGGCACAGTTGAGTTATCG 58.290 50.000 0.00 0.00 0.00 2.92
1684 5412 6.349033 GGAAATAAACGGCACAGTTGAGTTAT 60.349 38.462 0.00 0.00 34.14 1.89
1695 5431 2.678336 CTGAGGAGGAAATAAACGGCAC 59.322 50.000 0.00 0.00 0.00 5.01
1724 5647 5.475564 ACGTGAACACCAAGCCTAATAATTT 59.524 36.000 0.00 0.00 0.00 1.82
1733 6023 1.092921 TGTCACGTGAACACCAAGCC 61.093 55.000 21.95 4.88 0.00 4.35
1746 6036 2.095008 CCGATCATATCCCTCTGTCACG 60.095 54.545 0.00 0.00 0.00 4.35
1747 6037 2.353208 GCCGATCATATCCCTCTGTCAC 60.353 54.545 0.00 0.00 0.00 3.67
1750 6044 0.891373 CGCCGATCATATCCCTCTGT 59.109 55.000 0.00 0.00 0.00 3.41
2185 11067 1.001406 CTCTCACCAGTCAACAGGGAC 59.999 57.143 0.00 0.00 38.08 4.46
2206 11088 2.472695 ACGTAGAGAAATGCAAGCCA 57.527 45.000 0.00 0.00 0.00 4.75
2254 11150 2.236146 ACACGGGACATAAATCAGAGCA 59.764 45.455 0.00 0.00 0.00 4.26
2315 11215 2.023673 TCGCCTGAAAATTGCATAGGG 58.976 47.619 0.00 0.00 0.00 3.53
2525 11428 8.320295 CACCATTCGATTTTTATGTTGTATTGC 58.680 33.333 0.00 0.00 0.00 3.56
2537 11440 1.883275 TCCGCACACCATTCGATTTTT 59.117 42.857 0.00 0.00 0.00 1.94
2541 11444 0.821517 TAGTCCGCACACCATTCGAT 59.178 50.000 0.00 0.00 0.00 3.59
2547 11450 2.945456 AGATAGATAGTCCGCACACCA 58.055 47.619 0.00 0.00 0.00 4.17
2551 11454 9.088512 CCAATAATTTAGATAGATAGTCCGCAC 57.911 37.037 0.00 0.00 0.00 5.34
2599 11512 5.824097 ACATACTTGGACGTTGTTAAACCTT 59.176 36.000 0.00 0.00 32.23 3.50
2612 11525 7.422399 TCAAAGCTACAAAAACATACTTGGAC 58.578 34.615 0.00 0.00 0.00 4.02
2652 11567 1.664965 GTCACACACACTCTCGGCC 60.665 63.158 0.00 0.00 0.00 6.13
2669 11584 1.476085 CCTGATGAGCTTCTCAGACGT 59.524 52.381 21.68 0.00 44.08 4.34
2687 11602 2.512476 ACTTGTACACAAACCCTTCCCT 59.488 45.455 0.00 0.00 35.15 4.20
2788 11703 5.447624 TCGATGAACAACTGAGTAACTGA 57.552 39.130 0.00 0.00 0.00 3.41
2789 11704 7.489435 ACATATCGATGAACAACTGAGTAACTG 59.511 37.037 8.54 0.00 36.48 3.16
2790 11705 7.489435 CACATATCGATGAACAACTGAGTAACT 59.511 37.037 8.54 0.00 36.48 2.24
2791 11706 7.488150 TCACATATCGATGAACAACTGAGTAAC 59.512 37.037 8.54 0.00 36.48 2.50
2792 11707 7.543756 TCACATATCGATGAACAACTGAGTAA 58.456 34.615 8.54 0.00 36.48 2.24
2793 11708 7.095695 TCACATATCGATGAACAACTGAGTA 57.904 36.000 8.54 0.00 36.48 2.59
2794 11709 5.965922 TCACATATCGATGAACAACTGAGT 58.034 37.500 8.54 0.00 36.48 3.41
2795 11710 6.698766 TGATCACATATCGATGAACAACTGAG 59.301 38.462 8.54 0.00 36.48 3.35
2909 11824 6.082338 CAGGAAAACGAAGTGATTCTCAATG 58.918 40.000 0.00 0.00 45.00 2.82
2925 11840 2.033194 CGGTCGAGGCCAGGAAAAC 61.033 63.158 5.01 0.00 0.00 2.43
2933 11848 3.834799 CCCACTACGGTCGAGGCC 61.835 72.222 0.00 0.00 0.00 5.19
2937 11852 1.904865 AGTTGCCCACTACGGTCGA 60.905 57.895 0.00 0.00 31.97 4.20
2947 11862 4.700448 CCCATGCCCAGTTGCCCA 62.700 66.667 0.00 0.00 0.00 5.36
2948 11863 4.380945 TCCCATGCCCAGTTGCCC 62.381 66.667 0.00 0.00 0.00 5.36
2949 11864 2.757099 CTCCCATGCCCAGTTGCC 60.757 66.667 0.00 0.00 0.00 4.52
2950 11865 2.036256 ACTCCCATGCCCAGTTGC 59.964 61.111 0.00 0.00 0.00 4.17
2951 11866 1.679977 CCACTCCCATGCCCAGTTG 60.680 63.158 0.00 0.00 0.00 3.16
2952 11867 1.852157 TCCACTCCCATGCCCAGTT 60.852 57.895 0.00 0.00 0.00 3.16
2953 11868 2.204136 TCCACTCCCATGCCCAGT 60.204 61.111 0.00 0.00 0.00 4.00
2954 11869 2.593978 CTCCACTCCCATGCCCAG 59.406 66.667 0.00 0.00 0.00 4.45
3018 11933 4.520111 ACTAGATATCACTCAGCTGCTCTG 59.480 45.833 9.47 3.77 44.21 3.35
3033 11948 8.116651 ACGTGCAATTATCTCTCACTAGATAT 57.883 34.615 0.00 0.00 38.08 1.63
3544 12460 6.375377 GCACAAAACCGTCTCAATATTGTTA 58.625 36.000 14.97 2.23 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.