Multiple sequence alignment - TraesCS2D01G480700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G480700 chr2D 100.000 5179 0 0 1 5179 583235048 583229870 0.000000e+00 9564.0
1 TraesCS2D01G480700 chr2D 90.074 1491 112 16 2443 3924 545500013 545501476 0.000000e+00 1901.0
2 TraesCS2D01G480700 chr2D 88.802 1286 108 26 1010 2268 545498516 545499792 0.000000e+00 1544.0
3 TraesCS2D01G480700 chr2D 85.641 1365 159 17 2359 3711 581524819 581526158 0.000000e+00 1400.0
4 TraesCS2D01G480700 chr2D 83.971 1229 166 20 1039 2253 581523528 581524739 0.000000e+00 1149.0
5 TraesCS2D01G480700 chr2D 94.407 447 23 2 182 627 141860755 141860310 0.000000e+00 686.0
6 TraesCS2D01G480700 chr2D 77.108 913 157 32 1026 1927 438247565 438248436 1.010000e-131 481.0
7 TraesCS2D01G480700 chr2D 97.436 195 5 0 2 196 78111380 78111186 2.990000e-87 333.0
8 TraesCS2D01G480700 chr2D 97.423 194 5 0 1 194 601546434 601546627 1.070000e-86 331.0
9 TraesCS2D01G480700 chr2D 86.598 291 24 8 3734 4022 545501480 545501757 1.810000e-79 307.0
10 TraesCS2D01G480700 chr2D 88.718 195 7 5 3734 3924 545501385 545501568 1.880000e-54 224.0
11 TraesCS2D01G480700 chr2D 92.784 97 5 2 3830 3924 545501285 545501381 6.990000e-29 139.0
12 TraesCS2D01G480700 chr2D 100.000 62 0 0 1010 1071 581523463 581523524 1.180000e-21 115.0
13 TraesCS2D01G480700 chr2D 85.263 95 11 2 3896 3987 581526512 581526606 1.540000e-15 95.3
14 TraesCS2D01G480700 chr2D 92.308 65 4 1 3830 3893 581526211 581526275 1.990000e-14 91.6
15 TraesCS2D01G480700 chr2D 93.617 47 3 0 835 881 507861509 507861463 2.590000e-08 71.3
16 TraesCS2D01G480700 chr2B 93.760 1266 64 7 1006 2268 702727640 702726387 0.000000e+00 1886.0
17 TraesCS2D01G480700 chr2B 97.527 1011 19 4 2420 3429 702726224 702725219 0.000000e+00 1724.0
18 TraesCS2D01G480700 chr2B 85.033 1363 161 17 2359 3711 699828796 699827467 0.000000e+00 1347.0
19 TraesCS2D01G480700 chr2B 94.317 827 41 4 192 1013 702729283 702728458 0.000000e+00 1262.0
20 TraesCS2D01G480700 chr2B 84.133 1229 164 19 1039 2253 699830087 699828876 0.000000e+00 1160.0
21 TraesCS2D01G480700 chr2B 98.310 651 5 3 3479 4123 702724938 702724288 0.000000e+00 1136.0
22 TraesCS2D01G480700 chr2B 96.356 686 10 5 4497 5179 702724287 702723614 0.000000e+00 1114.0
23 TraesCS2D01G480700 chr2B 77.951 771 142 19 1165 1927 515912787 515913537 1.700000e-124 457.0
24 TraesCS2D01G480700 chr2B 81.188 202 29 8 1208 1403 705192567 705192765 2.500000e-33 154.0
25 TraesCS2D01G480700 chr2B 97.561 82 1 1 1006 1086 699830479 699830398 6.990000e-29 139.0
26 TraesCS2D01G480700 chr2B 93.443 61 3 1 3902 3961 699827107 699827047 7.140000e-14 89.8
27 TraesCS2D01G480700 chr2B 90.769 65 5 1 3830 3893 699827414 699827350 9.240000e-13 86.1
28 TraesCS2D01G480700 chr2B 95.918 49 0 1 3452 3500 702724984 702724938 1.550000e-10 78.7
29 TraesCS2D01G480700 chr2A 89.544 1492 118 19 2443 3924 687505299 687503836 0.000000e+00 1857.0
30 TraesCS2D01G480700 chr2A 88.322 1216 116 18 1057 2268 687506686 687505493 0.000000e+00 1435.0
31 TraesCS2D01G480700 chr2A 80.479 1752 229 50 1769 3461 718379353 718377656 0.000000e+00 1236.0
32 TraesCS2D01G480700 chr2A 90.870 230 11 3 3734 3962 687503832 687503612 3.030000e-77 300.0
33 TraesCS2D01G480700 chr2A 87.692 195 9 7 3734 3924 687503927 687503744 4.060000e-51 213.0
34 TraesCS2D01G480700 chr2A 78.037 214 40 4 671 881 186356383 186356174 1.510000e-25 128.0
35 TraesCS2D01G480700 chr2A 90.722 97 7 2 3830 3924 687504027 687503931 1.510000e-25 128.0
36 TraesCS2D01G480700 chr1A 80.776 1212 190 28 2515 3711 566586541 566585358 0.000000e+00 907.0
37 TraesCS2D01G480700 chr1A 76.705 1129 217 31 1168 2269 566587851 566586742 2.080000e-163 586.0
38 TraesCS2D01G480700 chr1A 87.097 279 25 7 4023 4293 59492189 59492464 6.520000e-79 305.0
39 TraesCS2D01G480700 chr1A 87.050 278 26 6 4023 4293 466137115 466137389 6.520000e-79 305.0
40 TraesCS2D01G480700 chr1A 88.655 238 14 6 4312 4540 466137378 466137611 1.420000e-70 278.0
41 TraesCS2D01G480700 chr1A 87.395 238 17 6 4312 4540 59492453 59492686 1.430000e-65 261.0
42 TraesCS2D01G480700 chr5D 94.407 447 24 1 182 627 455723588 455723142 0.000000e+00 686.0
43 TraesCS2D01G480700 chr5D 94.183 447 24 2 182 627 173023119 173022674 0.000000e+00 680.0
44 TraesCS2D01G480700 chr5D 93.736 447 27 1 182 627 257414440 257413994 0.000000e+00 669.0
45 TraesCS2D01G480700 chr5D 78.626 131 27 1 751 881 426303624 426303495 9.240000e-13 86.1
46 TraesCS2D01G480700 chr4D 93.960 447 26 1 182 627 383588794 383589240 0.000000e+00 675.0
47 TraesCS2D01G480700 chr4D 97.917 192 4 0 1 192 411200113 411200304 2.990000e-87 333.0
48 TraesCS2D01G480700 chr4D 96.970 198 5 1 1 197 332940866 332940669 1.070000e-86 331.0
49 TraesCS2D01G480700 chrUn 93.736 447 26 2 182 627 102162058 102162503 0.000000e+00 669.0
50 TraesCS2D01G480700 chrUn 92.347 392 30 0 1194 1585 479739906 479739515 4.530000e-155 558.0
51 TraesCS2D01G480700 chr1D 93.736 447 27 1 182 627 204320499 204320053 0.000000e+00 669.0
52 TraesCS2D01G480700 chr1D 93.736 447 27 1 182 627 288231217 288230771 0.000000e+00 669.0
53 TraesCS2D01G480700 chr1D 86.395 147 19 1 4023 4169 309980692 309980837 5.370000e-35 159.0
54 TraesCS2D01G480700 chr1D 87.302 126 12 4 4024 4147 480008503 480008380 1.940000e-29 141.0
55 TraesCS2D01G480700 chr1B 80.940 787 117 20 2515 3290 657282587 657281823 4.470000e-165 592.0
56 TraesCS2D01G480700 chr1B 82.004 539 49 21 4023 4547 428416 427912 1.040000e-111 414.0
57 TraesCS2D01G480700 chr1B 82.004 539 49 21 4023 4547 435541 435037 1.040000e-111 414.0
58 TraesCS2D01G480700 chr1B 100.000 29 0 0 694 722 447160913 447160885 3.000000e-03 54.7
59 TraesCS2D01G480700 chr6D 98.429 191 3 0 1 191 87731124 87730934 2.310000e-88 337.0
60 TraesCS2D01G480700 chr6D 95.000 100 4 1 4917 5016 449134496 449134398 6.940000e-34 156.0
61 TraesCS2D01G480700 chr6D 92.857 42 2 1 4918 4959 449232470 449232430 5.600000e-05 60.2
62 TraesCS2D01G480700 chr3D 97.000 200 6 0 1 200 579823055 579823254 2.310000e-88 337.0
63 TraesCS2D01G480700 chr3D 96.020 201 8 0 1 201 477769114 477768914 1.390000e-85 327.0
64 TraesCS2D01G480700 chr3D 79.310 116 23 1 691 805 330906211 330906096 4.300000e-11 80.5
65 TraesCS2D01G480700 chr7D 95.588 204 8 1 1 203 486278292 486278495 5.000000e-85 326.0
66 TraesCS2D01G480700 chr7D 88.561 271 20 6 4025 4295 403269313 403269572 8.370000e-83 318.0
67 TraesCS2D01G480700 chr7D 92.760 221 13 3 1 220 491382259 491382477 3.010000e-82 316.0
68 TraesCS2D01G480700 chr7D 89.113 248 13 6 4312 4547 403269559 403269804 3.920000e-76 296.0
69 TraesCS2D01G480700 chr7D 75.769 260 55 7 627 881 479017307 479017563 1.960000e-24 124.0
70 TraesCS2D01G480700 chr6A 88.235 238 15 6 4312 4540 360522125 360521892 6.610000e-69 272.0
71 TraesCS2D01G480700 chr6A 89.952 209 21 0 4023 4231 360522370 360522162 2.380000e-68 270.0
72 TraesCS2D01G480700 chr5B 82.110 218 35 3 665 881 163283099 163283313 3.190000e-42 183.0
73 TraesCS2D01G480700 chr5B 82.353 204 27 8 1206 1403 56194775 56194575 8.920000e-38 169.0
74 TraesCS2D01G480700 chr5B 72.260 584 120 28 1368 1921 710949108 710948537 5.410000e-30 143.0
75 TraesCS2D01G480700 chr5B 77.315 216 37 9 670 880 74155985 74155777 3.280000e-22 117.0
76 TraesCS2D01G480700 chr5B 75.377 199 45 4 684 881 250141623 250141818 5.520000e-15 93.5
77 TraesCS2D01G480700 chr3A 79.724 217 34 8 671 881 463124765 463124977 1.160000e-31 148.0
78 TraesCS2D01G480700 chr7B 89.381 113 12 0 4055 4167 474739692 474739580 5.410000e-30 143.0
79 TraesCS2D01G480700 chr4A 78.404 213 43 2 670 881 663435849 663435639 9.050000e-28 135.0
80 TraesCS2D01G480700 chr4A 76.995 213 46 2 670 881 663420945 663420735 9.110000e-23 119.0
81 TraesCS2D01G480700 chr4A 78.750 160 27 7 659 816 644255583 644255429 3.300000e-17 100.0
82 TraesCS2D01G480700 chr7A 81.679 131 22 1 751 881 83176669 83176797 1.970000e-19 108.0
83 TraesCS2D01G480700 chr5A 80.272 147 23 6 673 814 94684445 94684590 7.090000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G480700 chr2D 583229870 583235048 5178 True 9564.000000 9564 100.000000 1 5179 1 chr2D.!!$R4 5178
1 TraesCS2D01G480700 chr2D 545498516 545501757 3241 False 823.000000 1901 89.395200 1010 4022 5 chr2D.!!$F3 3012
2 TraesCS2D01G480700 chr2D 581523463 581526606 3143 False 570.180000 1400 89.436600 1010 3987 5 chr2D.!!$F4 2977
3 TraesCS2D01G480700 chr2D 438247565 438248436 871 False 481.000000 481 77.108000 1026 1927 1 chr2D.!!$F1 901
4 TraesCS2D01G480700 chr2B 702723614 702729283 5669 True 1200.116667 1886 96.031333 192 5179 6 chr2B.!!$R2 4987
5 TraesCS2D01G480700 chr2B 699827047 699830479 3432 True 564.380000 1347 90.187800 1006 3961 5 chr2B.!!$R1 2955
6 TraesCS2D01G480700 chr2B 515912787 515913537 750 False 457.000000 457 77.951000 1165 1927 1 chr2B.!!$F1 762
7 TraesCS2D01G480700 chr2A 718377656 718379353 1697 True 1236.000000 1236 80.479000 1769 3461 1 chr2A.!!$R2 1692
8 TraesCS2D01G480700 chr2A 687503612 687506686 3074 True 786.600000 1857 89.430000 1057 3962 5 chr2A.!!$R3 2905
9 TraesCS2D01G480700 chr1A 566585358 566587851 2493 True 746.500000 907 78.740500 1168 3711 2 chr1A.!!$R1 2543
10 TraesCS2D01G480700 chr1B 657281823 657282587 764 True 592.000000 592 80.940000 2515 3290 1 chr1B.!!$R4 775
11 TraesCS2D01G480700 chr1B 427912 428416 504 True 414.000000 414 82.004000 4023 4547 1 chr1B.!!$R1 524
12 TraesCS2D01G480700 chr1B 435037 435541 504 True 414.000000 414 82.004000 4023 4547 1 chr1B.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
80 81 0.043334 AGTAGGAGCCCACCACATCT 59.957 55.0 0.00 0.00 0.00 2.90 F
172 173 0.173255 GGCCCAAAATGTCACGGATG 59.827 55.0 0.00 0.00 0.00 3.51 F
419 420 0.384353 GCGCGAACAACTGTCCTTTC 60.384 55.0 12.10 0.00 0.00 2.62 F
2344 3592 0.108138 AATCTTCTTCTGTCCGGCCG 60.108 55.0 21.04 21.04 0.00 6.13 F
2437 3742 1.093159 CAAGAGGGAGTGCTTCATGC 58.907 55.0 0.00 0.00 43.25 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 3071 0.314302 CCAAGGATAGGGACGTAGCG 59.686 60.000 0.0 0.0 0.0 4.26 R
2073 3304 1.154205 GCCCCACATCGATCAAGACG 61.154 60.000 0.0 0.0 0.0 4.18 R
2416 3715 0.034670 ATGAAGCACTCCCTCTTGGC 60.035 55.000 0.0 0.0 0.0 4.52 R
3608 5253 4.302455 CAGAGACTACATGCCTAATTCCG 58.698 47.826 0.0 0.0 0.0 4.30 R
4370 6365 2.330216 AGATGGCTACCACCCTATGTC 58.670 52.381 0.0 0.0 35.8 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.327404 GGCCCTCCCAGGACGAAA 61.327 66.667 0.00 0.00 37.67 3.46
28 29 2.754375 GCCCTCCCAGGACGAAAA 59.246 61.111 0.00 0.00 37.67 2.29
29 30 1.377333 GCCCTCCCAGGACGAAAAG 60.377 63.158 0.00 0.00 37.67 2.27
30 31 1.377333 CCCTCCCAGGACGAAAAGC 60.377 63.158 0.00 0.00 37.67 3.51
31 32 1.377333 CCTCCCAGGACGAAAAGCC 60.377 63.158 0.00 0.00 37.67 4.35
32 33 1.377333 CTCCCAGGACGAAAAGCCC 60.377 63.158 0.00 0.00 0.00 5.19
33 34 2.124507 CTCCCAGGACGAAAAGCCCA 62.125 60.000 0.00 0.00 0.00 5.36
34 35 1.000896 CCCAGGACGAAAAGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
35 36 0.611896 CCCAGGACGAAAAGCCCATT 60.612 55.000 0.00 0.00 0.00 3.16
36 37 1.256812 CCAGGACGAAAAGCCCATTT 58.743 50.000 0.00 0.00 0.00 2.32
37 38 1.618343 CCAGGACGAAAAGCCCATTTT 59.382 47.619 0.00 0.00 43.88 1.82
47 48 5.750352 AAAAGCCCATTTTCTGTCATGAT 57.250 34.783 0.00 0.00 36.31 2.45
48 49 5.750352 AAAGCCCATTTTCTGTCATGATT 57.250 34.783 0.00 0.00 0.00 2.57
49 50 5.750352 AAGCCCATTTTCTGTCATGATTT 57.250 34.783 0.00 0.00 0.00 2.17
50 51 5.750352 AGCCCATTTTCTGTCATGATTTT 57.250 34.783 0.00 0.00 0.00 1.82
51 52 6.117975 AGCCCATTTTCTGTCATGATTTTT 57.882 33.333 0.00 0.00 0.00 1.94
71 72 4.755266 TTTGTCATAGAAGTAGGAGCCC 57.245 45.455 0.00 0.00 0.00 5.19
72 73 3.398318 TGTCATAGAAGTAGGAGCCCA 57.602 47.619 0.00 0.00 0.00 5.36
73 74 3.031736 TGTCATAGAAGTAGGAGCCCAC 58.968 50.000 0.00 0.00 0.00 4.61
74 75 2.365941 GTCATAGAAGTAGGAGCCCACC 59.634 54.545 0.00 0.00 0.00 4.61
75 76 2.023404 TCATAGAAGTAGGAGCCCACCA 60.023 50.000 0.00 0.00 0.00 4.17
76 77 1.861982 TAGAAGTAGGAGCCCACCAC 58.138 55.000 0.00 0.00 0.00 4.16
77 78 0.178903 AGAAGTAGGAGCCCACCACA 60.179 55.000 0.00 0.00 0.00 4.17
78 79 0.912486 GAAGTAGGAGCCCACCACAT 59.088 55.000 0.00 0.00 0.00 3.21
79 80 0.912486 AAGTAGGAGCCCACCACATC 59.088 55.000 0.00 0.00 0.00 3.06
80 81 0.043334 AGTAGGAGCCCACCACATCT 59.957 55.000 0.00 0.00 0.00 2.90
81 82 1.291033 AGTAGGAGCCCACCACATCTA 59.709 52.381 0.00 0.00 0.00 1.98
82 83 2.090494 AGTAGGAGCCCACCACATCTAT 60.090 50.000 0.00 0.00 0.00 1.98
83 84 1.135094 AGGAGCCCACCACATCTATG 58.865 55.000 0.00 0.00 0.00 2.23
84 85 1.131638 GGAGCCCACCACATCTATGA 58.868 55.000 0.00 0.00 0.00 2.15
85 86 1.701847 GGAGCCCACCACATCTATGAT 59.298 52.381 0.00 0.00 0.00 2.45
86 87 2.551721 GGAGCCCACCACATCTATGATG 60.552 54.545 6.06 6.06 0.00 3.07
87 88 2.369860 GAGCCCACCACATCTATGATGA 59.630 50.000 13.63 0.00 0.00 2.92
88 89 2.984604 AGCCCACCACATCTATGATGAT 59.015 45.455 13.63 0.00 0.00 2.45
89 90 4.170449 AGCCCACCACATCTATGATGATA 58.830 43.478 13.63 0.00 0.00 2.15
90 91 4.786994 AGCCCACCACATCTATGATGATAT 59.213 41.667 13.63 0.00 0.00 1.63
91 92 5.104610 AGCCCACCACATCTATGATGATATC 60.105 44.000 13.63 0.00 0.00 1.63
92 93 5.354767 CCCACCACATCTATGATGATATCG 58.645 45.833 13.63 0.01 0.00 2.92
93 94 5.354767 CCACCACATCTATGATGATATCGG 58.645 45.833 13.63 8.22 0.00 4.18
94 95 5.354767 CACCACATCTATGATGATATCGGG 58.645 45.833 13.63 7.64 0.00 5.14
95 96 5.026121 ACCACATCTATGATGATATCGGGT 58.974 41.667 13.63 8.12 0.00 5.28
96 97 5.485353 ACCACATCTATGATGATATCGGGTT 59.515 40.000 13.63 0.00 0.00 4.11
97 98 6.013379 ACCACATCTATGATGATATCGGGTTT 60.013 38.462 13.63 0.00 0.00 3.27
98 99 6.881065 CCACATCTATGATGATATCGGGTTTT 59.119 38.462 13.63 0.00 0.00 2.43
99 100 7.148356 CCACATCTATGATGATATCGGGTTTTG 60.148 40.741 13.63 0.00 0.00 2.44
100 101 7.388776 CACATCTATGATGATATCGGGTTTTGT 59.611 37.037 13.63 0.00 0.00 2.83
101 102 7.604164 ACATCTATGATGATATCGGGTTTTGTC 59.396 37.037 13.63 0.00 0.00 3.18
102 103 7.061566 TCTATGATGATATCGGGTTTTGTCA 57.938 36.000 0.00 0.00 0.00 3.58
103 104 7.505258 TCTATGATGATATCGGGTTTTGTCAA 58.495 34.615 0.00 0.00 0.00 3.18
104 105 7.990314 TCTATGATGATATCGGGTTTTGTCAAA 59.010 33.333 0.00 0.00 0.00 2.69
105 106 6.825944 TGATGATATCGGGTTTTGTCAAAA 57.174 33.333 6.65 6.65 0.00 2.44
106 107 7.403312 TGATGATATCGGGTTTTGTCAAAAT 57.597 32.000 13.65 0.69 32.22 1.82
107 108 7.835822 TGATGATATCGGGTTTTGTCAAAATT 58.164 30.769 13.65 1.16 32.22 1.82
108 109 8.961634 TGATGATATCGGGTTTTGTCAAAATTA 58.038 29.630 13.65 1.47 32.22 1.40
109 110 9.965824 GATGATATCGGGTTTTGTCAAAATTAT 57.034 29.630 13.65 7.90 32.22 1.28
110 111 9.965824 ATGATATCGGGTTTTGTCAAAATTATC 57.034 29.630 13.65 13.74 32.22 1.75
111 112 8.126074 TGATATCGGGTTTTGTCAAAATTATCG 58.874 33.333 13.65 13.75 32.22 2.92
112 113 5.692613 TCGGGTTTTGTCAAAATTATCGT 57.307 34.783 13.65 0.00 32.22 3.73
113 114 5.691815 TCGGGTTTTGTCAAAATTATCGTC 58.308 37.500 13.65 0.00 32.22 4.20
114 115 5.238868 TCGGGTTTTGTCAAAATTATCGTCA 59.761 36.000 13.65 0.32 32.22 4.35
115 116 6.072397 TCGGGTTTTGTCAAAATTATCGTCAT 60.072 34.615 13.65 0.00 32.22 3.06
116 117 7.119407 TCGGGTTTTGTCAAAATTATCGTCATA 59.881 33.333 13.65 0.00 32.22 2.15
117 118 7.428183 CGGGTTTTGTCAAAATTATCGTCATAG 59.572 37.037 13.65 0.00 32.22 2.23
118 119 8.455682 GGGTTTTGTCAAAATTATCGTCATAGA 58.544 33.333 13.65 0.00 32.22 1.98
119 120 9.834628 GGTTTTGTCAAAATTATCGTCATAGAA 57.165 29.630 13.65 0.00 32.22 2.10
123 124 8.771920 TGTCAAAATTATCGTCATAGAAGTGT 57.228 30.769 0.00 0.00 0.00 3.55
124 125 8.869897 TGTCAAAATTATCGTCATAGAAGTGTC 58.130 33.333 0.00 0.00 0.00 3.67
125 126 8.869897 GTCAAAATTATCGTCATAGAAGTGTCA 58.130 33.333 0.00 0.00 0.00 3.58
126 127 9.599866 TCAAAATTATCGTCATAGAAGTGTCAT 57.400 29.630 0.00 0.00 0.00 3.06
134 135 8.446599 TCGTCATAGAAGTGTCATAAGTATGA 57.553 34.615 0.00 0.00 40.19 2.15
159 160 2.892784 AAAAATTTCGTTCGGCCCAA 57.107 40.000 0.00 0.00 0.00 4.12
160 161 2.892784 AAAATTTCGTTCGGCCCAAA 57.107 40.000 0.00 0.00 0.00 3.28
161 162 2.892784 AAATTTCGTTCGGCCCAAAA 57.107 40.000 0.00 0.00 0.00 2.44
162 163 3.394674 AAATTTCGTTCGGCCCAAAAT 57.605 38.095 0.00 0.00 0.00 1.82
163 164 2.362169 ATTTCGTTCGGCCCAAAATG 57.638 45.000 0.00 0.00 0.00 2.32
164 165 1.033574 TTTCGTTCGGCCCAAAATGT 58.966 45.000 0.00 0.00 0.00 2.71
165 166 0.594110 TTCGTTCGGCCCAAAATGTC 59.406 50.000 0.00 0.00 0.00 3.06
166 167 0.535328 TCGTTCGGCCCAAAATGTCA 60.535 50.000 0.00 0.00 0.00 3.58
167 168 0.386731 CGTTCGGCCCAAAATGTCAC 60.387 55.000 0.00 0.00 0.00 3.67
168 169 0.386731 GTTCGGCCCAAAATGTCACG 60.387 55.000 0.00 0.00 0.00 4.35
169 170 1.519751 TTCGGCCCAAAATGTCACGG 61.520 55.000 0.00 0.00 0.00 4.94
170 171 1.969064 CGGCCCAAAATGTCACGGA 60.969 57.895 0.00 0.00 0.00 4.69
171 172 1.312371 CGGCCCAAAATGTCACGGAT 61.312 55.000 0.00 0.00 0.00 4.18
172 173 0.173255 GGCCCAAAATGTCACGGATG 59.827 55.000 0.00 0.00 0.00 3.51
173 174 0.887933 GCCCAAAATGTCACGGATGT 59.112 50.000 0.00 0.00 0.00 3.06
175 176 1.885887 CCCAAAATGTCACGGATGTGT 59.114 47.619 0.00 0.00 46.49 3.72
176 177 2.095263 CCCAAAATGTCACGGATGTGTC 60.095 50.000 0.00 0.00 46.49 3.67
177 178 2.813754 CCAAAATGTCACGGATGTGTCT 59.186 45.455 0.00 0.00 46.49 3.41
178 179 3.253188 CCAAAATGTCACGGATGTGTCTT 59.747 43.478 0.00 0.00 46.49 3.01
179 180 4.261572 CCAAAATGTCACGGATGTGTCTTT 60.262 41.667 0.00 0.00 46.49 2.52
180 181 5.280945 CAAAATGTCACGGATGTGTCTTTT 58.719 37.500 0.00 0.00 46.49 2.27
181 182 5.514274 AAATGTCACGGATGTGTCTTTTT 57.486 34.783 0.00 0.00 46.49 1.94
292 293 2.281761 CTGCCAACAAGCGGAGGT 60.282 61.111 0.00 0.00 42.00 3.85
309 310 4.697756 TGGGGCGAGCAAGAACCG 62.698 66.667 0.00 0.00 0.00 4.44
334 335 0.972983 GACTCCAGCAGGCCTAGACA 60.973 60.000 3.98 0.00 33.74 3.41
341 342 2.121948 AGCAGGCCTAGACATCATCAA 58.878 47.619 3.98 0.00 0.00 2.57
368 369 2.146342 CCCCGATGATATGTTGACAGC 58.854 52.381 0.00 0.00 0.00 4.40
374 375 4.694037 CGATGATATGTTGACAGCCATCAT 59.306 41.667 13.05 13.05 38.40 2.45
383 384 1.370437 CAGCCATCATCTCCCTCCG 59.630 63.158 0.00 0.00 0.00 4.63
389 390 1.700042 ATCATCTCCCTCCGCCCAAC 61.700 60.000 0.00 0.00 0.00 3.77
411 412 0.393808 AATATGGGGCGCGAACAACT 60.394 50.000 12.10 0.00 0.00 3.16
419 420 0.384353 GCGCGAACAACTGTCCTTTC 60.384 55.000 12.10 0.00 0.00 2.62
421 422 1.305201 GCGAACAACTGTCCTTTCCA 58.695 50.000 0.00 0.00 0.00 3.53
487 488 2.513204 CCCACGAGCTCTGCCATG 60.513 66.667 12.85 2.28 0.00 3.66
489 490 2.267006 CACGAGCTCTGCCATGGT 59.733 61.111 14.67 0.00 0.00 3.55
494 495 1.506493 GAGCTCTGCCATGGTTATCG 58.494 55.000 14.67 0.00 0.00 2.92
501 502 1.135141 TGCCATGGTTATCGCAAAAGC 60.135 47.619 14.67 0.00 27.07 3.51
572 573 2.017049 CCTTAGAATGGGCAAGTTCCG 58.983 52.381 0.00 0.00 0.00 4.30
613 614 0.868406 CAAGCTTGACGACTGGTTCC 59.132 55.000 22.31 0.00 0.00 3.62
614 615 0.600255 AAGCTTGACGACTGGTTCCG 60.600 55.000 0.00 0.00 0.00 4.30
668 674 2.563134 GGGAGGCATATGGGAGGATAGT 60.563 54.545 4.56 0.00 0.00 2.12
763 769 1.281656 GTTTGGACGCAAAGACGGG 59.718 57.895 0.00 0.00 37.37 5.28
769 775 2.255252 CGCAAAGACGGGCCAAAG 59.745 61.111 4.39 0.00 0.00 2.77
783 789 1.409101 GCCAAAGTTAGGCGGGGAATA 60.409 52.381 0.00 0.00 43.15 1.75
793 799 1.340697 GGCGGGGAATAGGTCAAAAGT 60.341 52.381 0.00 0.00 0.00 2.66
823 829 1.960689 ACCGACATTTGTCCCCTTTTG 59.039 47.619 5.17 0.00 41.86 2.44
830 836 2.785357 TTGTCCCCTTTTGTTCCCAT 57.215 45.000 0.00 0.00 0.00 4.00
852 858 2.414840 ATTGGGCCGCGTTTTGTGTC 62.415 55.000 4.92 0.00 0.00 3.67
863 869 2.300433 GTTTTGTGTCCGTTTACCCCT 58.700 47.619 0.00 0.00 0.00 4.79
868 874 2.437281 TGTGTCCGTTTACCCCTAAACA 59.563 45.455 4.66 0.00 41.30 2.83
873 879 2.029110 CCGTTTACCCCTAAACAGACGA 60.029 50.000 0.00 0.00 41.30 4.20
965 971 2.167219 CGGGTCATACTGCAGCACG 61.167 63.158 15.27 6.03 0.00 5.34
1117 2306 0.996762 GGAGAGGGAGAGGGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
1166 2358 4.009675 CCCTTCATTGAGGTCAAATTCGA 58.990 43.478 0.00 0.00 39.55 3.71
1510 2708 2.044650 ATCCAAGCATGCGTGGCT 60.045 55.556 38.27 30.27 43.62 4.75
1582 2780 1.412710 ACTCTTCTGCCACGAGTTTCA 59.587 47.619 0.00 0.00 34.55 2.69
1621 2822 3.269178 CTGGTCATTGAAGAGGAAGAGC 58.731 50.000 0.00 0.00 0.00 4.09
1864 3071 1.576421 CAAACCTCAGACGCCAAGC 59.424 57.895 0.00 0.00 0.00 4.01
2038 3269 4.487412 GAAGCACAGCGCATGGCC 62.487 66.667 11.47 0.00 46.13 5.36
2073 3304 4.408821 TGCGGGGTCATGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
2083 3314 0.926155 CATGTGCTCCGTCTTGATCG 59.074 55.000 0.00 0.00 0.00 3.69
2084 3315 0.817654 ATGTGCTCCGTCTTGATCGA 59.182 50.000 0.00 0.00 0.00 3.59
2128 3359 1.447838 CACCTGCACGCCGTTATCT 60.448 57.895 0.00 0.00 0.00 1.98
2138 3369 0.529992 GCCGTTATCTCCACCTTCCG 60.530 60.000 0.00 0.00 0.00 4.30
2145 3376 4.344865 TCCACCTTCCGCCTTGGC 62.345 66.667 0.75 0.75 37.80 4.52
2211 3442 1.131126 CTCGACATGTTGTTGCCCATC 59.869 52.381 12.90 0.00 31.81 3.51
2223 3454 0.617935 TGCCCATCGAAGACATCCAA 59.382 50.000 0.00 0.00 42.51 3.53
2226 3457 2.486191 GCCCATCGAAGACATCCAAGAT 60.486 50.000 0.00 0.00 42.51 2.40
2268 3499 6.497259 TCCAGTAAGTTTCTCTGTCCACTAAT 59.503 38.462 0.00 0.00 0.00 1.73
2270 3501 8.311836 CCAGTAAGTTTCTCTGTCCACTAATTA 58.688 37.037 0.00 0.00 0.00 1.40
2271 3502 9.706691 CAGTAAGTTTCTCTGTCCACTAATTAA 57.293 33.333 0.00 0.00 0.00 1.40
2274 3505 8.794335 AAGTTTCTCTGTCCACTAATTAATCC 57.206 34.615 0.00 0.00 0.00 3.01
2275 3506 7.042335 AGTTTCTCTGTCCACTAATTAATCCG 58.958 38.462 0.00 0.00 0.00 4.18
2297 3545 3.507103 TCCATGCATTCATTTTGGTCG 57.493 42.857 0.00 0.00 0.00 4.79
2302 3550 3.145286 TGCATTCATTTTGGTCGTCTCA 58.855 40.909 0.00 0.00 0.00 3.27
2303 3551 3.758023 TGCATTCATTTTGGTCGTCTCAT 59.242 39.130 0.00 0.00 0.00 2.90
2304 3552 4.142622 TGCATTCATTTTGGTCGTCTCATC 60.143 41.667 0.00 0.00 0.00 2.92
2305 3553 4.095483 GCATTCATTTTGGTCGTCTCATCT 59.905 41.667 0.00 0.00 0.00 2.90
2306 3554 5.392380 GCATTCATTTTGGTCGTCTCATCTT 60.392 40.000 0.00 0.00 0.00 2.40
2307 3555 6.183360 GCATTCATTTTGGTCGTCTCATCTTA 60.183 38.462 0.00 0.00 0.00 2.10
2317 3565 6.811665 TGGTCGTCTCATCTTACTTACAAATG 59.188 38.462 0.00 0.00 0.00 2.32
2318 3566 6.237861 GGTCGTCTCATCTTACTTACAAATGC 60.238 42.308 0.00 0.00 0.00 3.56
2320 3568 6.531594 TCGTCTCATCTTACTTACAAATGCAG 59.468 38.462 0.00 0.00 0.00 4.41
2339 3587 8.443953 AATGCAGTATTAATCTTCTTCTGTCC 57.556 34.615 0.00 0.00 0.00 4.02
2341 3589 5.463724 GCAGTATTAATCTTCTTCTGTCCGG 59.536 44.000 0.00 0.00 0.00 5.14
2344 3592 0.108138 AATCTTCTTCTGTCCGGCCG 60.108 55.000 21.04 21.04 0.00 6.13
2362 3610 4.870426 CGGCCGCTAATATAATCAATCACT 59.130 41.667 14.67 0.00 0.00 3.41
2363 3611 5.351465 CGGCCGCTAATATAATCAATCACTT 59.649 40.000 14.67 0.00 0.00 3.16
2364 3612 6.533723 CGGCCGCTAATATAATCAATCACTTA 59.466 38.462 14.67 0.00 0.00 2.24
2365 3613 7.224753 CGGCCGCTAATATAATCAATCACTTAT 59.775 37.037 14.67 0.00 0.00 1.73
2366 3614 8.893727 GGCCGCTAATATAATCAATCACTTATT 58.106 33.333 0.00 0.00 0.00 1.40
2437 3742 1.093159 CAAGAGGGAGTGCTTCATGC 58.907 55.000 0.00 0.00 43.25 4.06
2441 3755 2.467826 GGGAGTGCTTCATGCTCGC 61.468 63.158 0.00 0.00 43.37 5.03
2482 3796 4.745837 GCTTGAGCTTGGCTTAGATATG 57.254 45.455 0.00 0.00 39.88 1.78
2490 3804 5.065914 GCTTGGCTTAGATATGTCATTCCA 58.934 41.667 0.00 0.00 0.00 3.53
2491 3805 5.532406 GCTTGGCTTAGATATGTCATTCCAA 59.468 40.000 0.00 0.00 0.00 3.53
2492 3806 6.208204 GCTTGGCTTAGATATGTCATTCCAAT 59.792 38.462 0.00 0.00 31.62 3.16
2493 3807 7.255730 GCTTGGCTTAGATATGTCATTCCAATT 60.256 37.037 0.00 0.00 31.62 2.32
2681 4050 5.022122 TCTGAGTCCAGATCTGAGTTCAAT 58.978 41.667 24.62 2.51 44.01 2.57
3028 4424 8.043710 ACTCTAATATTCTTGACAGGAAGGTTG 58.956 37.037 6.16 0.00 0.00 3.77
3429 4828 2.235898 GGTGCAAGGTGAATCTCTCTCT 59.764 50.000 0.00 0.00 0.00 3.10
3430 4829 3.520569 GTGCAAGGTGAATCTCTCTCTC 58.479 50.000 0.00 0.00 0.00 3.20
3431 4830 3.195396 GTGCAAGGTGAATCTCTCTCTCT 59.805 47.826 0.00 0.00 0.00 3.10
3432 4831 3.446873 TGCAAGGTGAATCTCTCTCTCTC 59.553 47.826 0.00 0.00 0.00 3.20
3433 4832 3.701040 GCAAGGTGAATCTCTCTCTCTCT 59.299 47.826 0.00 0.00 0.00 3.10
3434 4833 4.202050 GCAAGGTGAATCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
3435 4834 5.195940 CAAGGTGAATCTCTCTCTCTCTCT 58.804 45.833 0.00 0.00 0.00 3.10
3608 5253 1.087501 GGAAGAGCATGAAACCGGTC 58.912 55.000 8.04 0.00 0.00 4.79
3711 5356 2.288702 TGCTGTGCTCTCTCTTTCTGAC 60.289 50.000 0.00 0.00 0.00 3.51
4057 6025 2.446036 GGAGGCAGGGATACGGGT 60.446 66.667 0.00 0.00 37.60 5.28
4147 6115 5.900123 TCCCCTTCCATAAAAACTTGTTTGA 59.100 36.000 0.00 0.00 0.00 2.69
4161 6129 7.581213 AACTTGTTTGATAGATGTGGTTTGA 57.419 32.000 0.00 0.00 0.00 2.69
4162 6130 7.765695 ACTTGTTTGATAGATGTGGTTTGAT 57.234 32.000 0.00 0.00 0.00 2.57
4181 6149 8.507249 GGTTTGATATAATAGACTGATGGCAAC 58.493 37.037 0.00 0.00 0.00 4.17
4199 6167 4.630894 CAACAGTGCAGTTAAAAGTCCA 57.369 40.909 0.00 0.00 0.00 4.02
4200 6168 4.992688 CAACAGTGCAGTTAAAAGTCCAA 58.007 39.130 0.00 0.00 0.00 3.53
4221 6189 6.756074 TCCAATCTTTGCAAGTTTAACAACTG 59.244 34.615 0.00 0.00 42.89 3.16
4225 6193 9.816354 AATCTTTGCAAGTTTAACAACTGTAAT 57.184 25.926 0.00 0.00 42.89 1.89
4227 6195 8.462811 TCTTTGCAAGTTTAACAACTGTAATCA 58.537 29.630 0.00 0.00 42.89 2.57
4234 6202 9.950680 AAGTTTAACAACTGTAATCATGTTCTG 57.049 29.630 0.00 0.00 42.89 3.02
4255 6250 7.072177 TCTGTTACAAGAACAAGAACAACAG 57.928 36.000 0.00 0.00 41.74 3.16
4257 6252 5.708230 TGTTACAAGAACAAGAACAACAGGT 59.292 36.000 0.00 0.00 0.00 4.00
4269 6264 5.091552 AGAACAACAGGTTACTCCCAGATA 58.908 41.667 0.00 0.00 40.63 1.98
4271 6266 6.215636 AGAACAACAGGTTACTCCCAGATAAT 59.784 38.462 0.00 0.00 40.63 1.28
4272 6267 5.990668 ACAACAGGTTACTCCCAGATAATC 58.009 41.667 0.00 0.00 36.75 1.75
4280 6275 7.624077 AGGTTACTCCCAGATAATCTAACTTGT 59.376 37.037 0.00 0.00 36.75 3.16
4284 6279 6.126739 ACTCCCAGATAATCTAACTTGTTCCC 60.127 42.308 0.00 0.00 0.00 3.97
4295 6290 9.981460 AATCTAACTTGTTCCCAGATTATTCTT 57.019 29.630 7.73 0.00 34.91 2.52
4296 6291 9.981460 ATCTAACTTGTTCCCAGATTATTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
4323 6318 6.949352 TTTTGAGCAGATCCCAGATTATTC 57.051 37.500 0.00 0.00 0.00 1.75
4324 6319 5.901413 TTGAGCAGATCCCAGATTATTCT 57.099 39.130 0.00 0.00 0.00 2.40
4325 6320 5.901413 TGAGCAGATCCCAGATTATTCTT 57.099 39.130 0.00 0.00 0.00 2.52
4326 6321 6.257994 TGAGCAGATCCCAGATTATTCTTT 57.742 37.500 0.00 0.00 0.00 2.52
4327 6322 6.666678 TGAGCAGATCCCAGATTATTCTTTT 58.333 36.000 0.00 0.00 0.00 2.27
4328 6323 7.805163 TGAGCAGATCCCAGATTATTCTTTTA 58.195 34.615 0.00 0.00 0.00 1.52
4329 6324 7.935755 TGAGCAGATCCCAGATTATTCTTTTAG 59.064 37.037 0.00 0.00 0.00 1.85
4330 6325 8.038862 AGCAGATCCCAGATTATTCTTTTAGA 57.961 34.615 0.00 0.00 0.00 2.10
4331 6326 8.497745 AGCAGATCCCAGATTATTCTTTTAGAA 58.502 33.333 0.00 0.00 38.78 2.10
4332 6327 9.294614 GCAGATCCCAGATTATTCTTTTAGAAT 57.705 33.333 7.08 7.08 46.01 2.40
4370 6365 9.528018 ACAATATTCTGTTACAACCAAAGTTTG 57.472 29.630 8.73 8.73 32.45 2.93
4389 6384 2.047061 TGACATAGGGTGGTAGCCATC 58.953 52.381 0.00 0.00 38.48 3.51
4465 6464 3.520290 TGTTACCATCTAACTCCAGCG 57.480 47.619 0.00 0.00 0.00 5.18
4481 6480 0.322456 AGCGTGGGAAGCAGCAAATA 60.322 50.000 0.00 0.00 37.01 1.40
4488 6487 2.866762 GGGAAGCAGCAAATACTCGTAG 59.133 50.000 0.00 0.00 0.00 3.51
4491 6490 4.740695 GGAAGCAGCAAATACTCGTAGTAG 59.259 45.833 0.00 0.00 33.66 2.57
4637 6644 0.687757 TCATTCTCCTCTCCCCCACG 60.688 60.000 0.00 0.00 0.00 4.94
4737 6744 0.443869 CTCCGTCAAGTGCCGATTTG 59.556 55.000 0.00 0.00 0.00 2.32
4795 6802 2.787567 GGAGCAGAGGGAGCGTACC 61.788 68.421 0.00 0.00 37.01 3.34
4830 6837 4.200283 GAGCTGGGCCTCGACGAG 62.200 72.222 18.08 18.08 0.00 4.18
4993 7000 0.323178 CCCAGGTGAAGCTGCAATCT 60.323 55.000 0.00 0.00 0.00 2.40
5029 7036 5.392995 TCCAGAATCAATGAAAGGGACAAA 58.607 37.500 0.00 0.00 0.00 2.83
5055 7062 2.642311 TGGGATTGCAGGTTCAGTCTTA 59.358 45.455 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.821679 CTTTTCGTCCTGGGAGGGCC 62.822 65.000 0.00 0.00 36.37 5.80
11 12 1.377333 CTTTTCGTCCTGGGAGGGC 60.377 63.158 9.09 0.00 36.39 5.19
12 13 1.377333 GCTTTTCGTCCTGGGAGGG 60.377 63.158 9.09 0.00 35.59 4.30
13 14 1.377333 GGCTTTTCGTCCTGGGAGG 60.377 63.158 3.21 3.21 36.46 4.30
14 15 1.377333 GGGCTTTTCGTCCTGGGAG 60.377 63.158 0.00 0.00 33.40 4.30
15 16 1.497309 ATGGGCTTTTCGTCCTGGGA 61.497 55.000 0.00 0.00 38.58 4.37
16 17 0.611896 AATGGGCTTTTCGTCCTGGG 60.612 55.000 0.00 0.00 38.58 4.45
17 18 1.256812 AAATGGGCTTTTCGTCCTGG 58.743 50.000 0.00 0.00 38.58 4.45
18 19 2.946564 GAAAATGGGCTTTTCGTCCTG 58.053 47.619 0.00 0.00 42.34 3.86
25 26 5.750352 ATCATGACAGAAAATGGGCTTTT 57.250 34.783 0.00 0.00 39.78 2.27
26 27 5.750352 AATCATGACAGAAAATGGGCTTT 57.250 34.783 0.00 0.00 0.00 3.51
27 28 5.750352 AAATCATGACAGAAAATGGGCTT 57.250 34.783 0.00 0.00 0.00 4.35
28 29 5.750352 AAAATCATGACAGAAAATGGGCT 57.250 34.783 0.00 0.00 0.00 5.19
48 49 5.013704 TGGGCTCCTACTTCTATGACAAAAA 59.986 40.000 0.00 0.00 0.00 1.94
49 50 4.534500 TGGGCTCCTACTTCTATGACAAAA 59.466 41.667 0.00 0.00 0.00 2.44
50 51 4.081087 GTGGGCTCCTACTTCTATGACAAA 60.081 45.833 0.00 0.00 0.00 2.83
51 52 3.451178 GTGGGCTCCTACTTCTATGACAA 59.549 47.826 0.00 0.00 0.00 3.18
52 53 3.031736 GTGGGCTCCTACTTCTATGACA 58.968 50.000 0.00 0.00 0.00 3.58
53 54 2.365941 GGTGGGCTCCTACTTCTATGAC 59.634 54.545 2.46 0.00 0.00 3.06
54 55 2.023404 TGGTGGGCTCCTACTTCTATGA 60.023 50.000 2.46 0.00 0.00 2.15
55 56 2.103263 GTGGTGGGCTCCTACTTCTATG 59.897 54.545 2.46 0.00 0.00 2.23
56 57 2.292918 TGTGGTGGGCTCCTACTTCTAT 60.293 50.000 2.46 0.00 0.00 1.98
57 58 1.078159 TGTGGTGGGCTCCTACTTCTA 59.922 52.381 2.46 0.00 0.00 2.10
58 59 0.178903 TGTGGTGGGCTCCTACTTCT 60.179 55.000 2.46 0.00 0.00 2.85
59 60 0.912486 ATGTGGTGGGCTCCTACTTC 59.088 55.000 2.46 0.00 0.00 3.01
60 61 0.912486 GATGTGGTGGGCTCCTACTT 59.088 55.000 2.46 0.00 0.00 2.24
61 62 0.043334 AGATGTGGTGGGCTCCTACT 59.957 55.000 2.46 0.00 0.00 2.57
62 63 1.789523 TAGATGTGGTGGGCTCCTAC 58.210 55.000 0.00 0.00 0.00 3.18
63 64 2.090775 TCATAGATGTGGTGGGCTCCTA 60.091 50.000 0.00 0.00 0.00 2.94
64 65 1.135094 CATAGATGTGGTGGGCTCCT 58.865 55.000 0.00 0.00 0.00 3.69
65 66 1.131638 TCATAGATGTGGTGGGCTCC 58.868 55.000 0.00 0.00 0.00 4.70
66 67 2.369860 TCATCATAGATGTGGTGGGCTC 59.630 50.000 6.86 0.00 0.00 4.70
67 68 2.411583 TCATCATAGATGTGGTGGGCT 58.588 47.619 6.86 0.00 0.00 5.19
68 69 2.936919 TCATCATAGATGTGGTGGGC 57.063 50.000 6.86 0.00 0.00 5.36
69 70 5.354767 CGATATCATCATAGATGTGGTGGG 58.645 45.833 3.12 0.00 0.00 4.61
70 71 5.354767 CCGATATCATCATAGATGTGGTGG 58.645 45.833 3.12 1.70 0.00 4.61
71 72 5.105187 ACCCGATATCATCATAGATGTGGTG 60.105 44.000 3.12 0.00 0.00 4.17
72 73 5.026121 ACCCGATATCATCATAGATGTGGT 58.974 41.667 3.12 3.66 0.00 4.16
73 74 5.604758 ACCCGATATCATCATAGATGTGG 57.395 43.478 3.12 3.53 0.00 4.17
74 75 7.388776 ACAAAACCCGATATCATCATAGATGTG 59.611 37.037 3.12 0.00 0.00 3.21
75 76 7.453393 ACAAAACCCGATATCATCATAGATGT 58.547 34.615 3.12 0.00 0.00 3.06
76 77 7.603784 TGACAAAACCCGATATCATCATAGATG 59.396 37.037 3.12 0.62 0.00 2.90
77 78 7.679783 TGACAAAACCCGATATCATCATAGAT 58.320 34.615 3.12 0.00 0.00 1.98
78 79 7.061566 TGACAAAACCCGATATCATCATAGA 57.938 36.000 3.12 0.00 0.00 1.98
79 80 7.728847 TTGACAAAACCCGATATCATCATAG 57.271 36.000 3.12 0.00 0.00 2.23
80 81 8.512966 TTTTGACAAAACCCGATATCATCATA 57.487 30.769 9.30 0.00 0.00 2.15
81 82 7.403312 TTTTGACAAAACCCGATATCATCAT 57.597 32.000 9.30 0.00 0.00 2.45
82 83 6.825944 TTTTGACAAAACCCGATATCATCA 57.174 33.333 9.30 0.00 0.00 3.07
83 84 9.965824 ATAATTTTGACAAAACCCGATATCATC 57.034 29.630 15.36 0.00 32.37 2.92
84 85 9.965824 GATAATTTTGACAAAACCCGATATCAT 57.034 29.630 15.36 0.00 32.37 2.45
85 86 8.126074 CGATAATTTTGACAAAACCCGATATCA 58.874 33.333 15.36 0.00 32.37 2.15
86 87 8.126700 ACGATAATTTTGACAAAACCCGATATC 58.873 33.333 15.36 14.83 32.37 1.63
87 88 7.992008 ACGATAATTTTGACAAAACCCGATAT 58.008 30.769 15.36 9.17 32.37 1.63
88 89 7.119407 TGACGATAATTTTGACAAAACCCGATA 59.881 33.333 15.36 5.29 32.37 2.92
89 90 6.072397 TGACGATAATTTTGACAAAACCCGAT 60.072 34.615 15.36 6.78 32.37 4.18
90 91 5.238868 TGACGATAATTTTGACAAAACCCGA 59.761 36.000 15.36 2.38 32.37 5.14
91 92 5.453648 TGACGATAATTTTGACAAAACCCG 58.546 37.500 15.36 16.33 32.37 5.28
92 93 8.455682 TCTATGACGATAATTTTGACAAAACCC 58.544 33.333 15.36 4.83 32.37 4.11
93 94 9.834628 TTCTATGACGATAATTTTGACAAAACC 57.165 29.630 15.36 5.14 32.37 3.27
97 98 9.214957 ACACTTCTATGACGATAATTTTGACAA 57.785 29.630 0.00 0.00 0.00 3.18
98 99 8.771920 ACACTTCTATGACGATAATTTTGACA 57.228 30.769 0.00 0.00 0.00 3.58
99 100 8.869897 TGACACTTCTATGACGATAATTTTGAC 58.130 33.333 0.00 0.00 0.00 3.18
100 101 8.996024 TGACACTTCTATGACGATAATTTTGA 57.004 30.769 0.00 0.00 0.00 2.69
108 109 9.067986 TCATACTTATGACACTTCTATGACGAT 57.932 33.333 0.00 0.00 37.76 3.73
109 110 8.446599 TCATACTTATGACACTTCTATGACGA 57.553 34.615 0.00 0.00 37.76 4.20
140 141 2.892784 TTGGGCCGAACGAAATTTTT 57.107 40.000 0.00 0.00 0.00 1.94
141 142 2.892784 TTTGGGCCGAACGAAATTTT 57.107 40.000 0.79 0.00 0.00 1.82
142 143 2.892784 TTTTGGGCCGAACGAAATTT 57.107 40.000 5.46 0.00 0.00 1.82
143 144 2.036604 ACATTTTGGGCCGAACGAAATT 59.963 40.909 5.46 0.00 31.28 1.82
144 145 1.616374 ACATTTTGGGCCGAACGAAAT 59.384 42.857 5.46 0.00 33.33 2.17
145 146 1.001158 GACATTTTGGGCCGAACGAAA 60.001 47.619 5.46 0.00 0.00 3.46
146 147 0.594110 GACATTTTGGGCCGAACGAA 59.406 50.000 5.46 0.00 0.00 3.85
147 148 0.535328 TGACATTTTGGGCCGAACGA 60.535 50.000 5.46 0.00 0.00 3.85
148 149 0.386731 GTGACATTTTGGGCCGAACG 60.387 55.000 5.46 3.01 0.00 3.95
149 150 0.386731 CGTGACATTTTGGGCCGAAC 60.387 55.000 5.46 0.00 0.00 3.95
150 151 1.519751 CCGTGACATTTTGGGCCGAA 61.520 55.000 0.79 0.79 0.00 4.30
151 152 1.969064 CCGTGACATTTTGGGCCGA 60.969 57.895 0.00 0.00 0.00 5.54
152 153 1.312371 ATCCGTGACATTTTGGGCCG 61.312 55.000 0.00 0.00 0.00 6.13
153 154 0.173255 CATCCGTGACATTTTGGGCC 59.827 55.000 0.00 0.00 0.00 5.80
154 155 0.887933 ACATCCGTGACATTTTGGGC 59.112 50.000 0.00 0.00 0.00 5.36
155 156 1.885887 ACACATCCGTGACATTTTGGG 59.114 47.619 0.00 0.00 46.80 4.12
156 157 2.813754 AGACACATCCGTGACATTTTGG 59.186 45.455 0.00 0.00 46.80 3.28
157 158 4.488126 AAGACACATCCGTGACATTTTG 57.512 40.909 0.00 0.00 46.80 2.44
158 159 5.514274 AAAAGACACATCCGTGACATTTT 57.486 34.783 0.00 1.58 46.80 1.82
159 160 5.514274 AAAAAGACACATCCGTGACATTT 57.486 34.783 0.00 0.00 46.80 2.32
185 186 9.999009 GGAATATTTAGTTAAAACAGGCACTAC 57.001 33.333 0.00 0.00 36.02 2.73
186 187 9.181061 GGGAATATTTAGTTAAAACAGGCACTA 57.819 33.333 0.00 0.00 36.02 2.74
187 188 7.893833 AGGGAATATTTAGTTAAAACAGGCACT 59.106 33.333 0.00 0.00 43.88 4.40
188 189 7.973944 CAGGGAATATTTAGTTAAAACAGGCAC 59.026 37.037 0.00 0.00 0.00 5.01
189 190 7.672239 ACAGGGAATATTTAGTTAAAACAGGCA 59.328 33.333 0.00 0.00 0.00 4.75
190 191 8.063200 ACAGGGAATATTTAGTTAAAACAGGC 57.937 34.615 0.00 0.00 0.00 4.85
198 199 7.847848 AGTGGGAGTACAGGGAATATTTAGTTA 59.152 37.037 0.00 0.00 0.00 2.24
292 293 4.697756 CGGTTCTTGCTCGCCCCA 62.698 66.667 0.00 0.00 0.00 4.96
309 310 3.123620 CCTGCTGGAGTCGCTTGC 61.124 66.667 2.92 0.00 34.57 4.01
324 325 3.370953 GGTTGTTGATGATGTCTAGGCCT 60.371 47.826 11.78 11.78 0.00 5.19
334 335 1.285280 TCGGGGAGGTTGTTGATGAT 58.715 50.000 0.00 0.00 0.00 2.45
341 342 2.408565 ACATATCATCGGGGAGGTTGT 58.591 47.619 0.00 0.00 0.00 3.32
368 369 2.746359 GGCGGAGGGAGATGATGG 59.254 66.667 0.00 0.00 0.00 3.51
374 375 4.649705 TGGTTGGGCGGAGGGAGA 62.650 66.667 0.00 0.00 0.00 3.71
389 390 1.358759 GTTCGCGCCCCATATTTGG 59.641 57.895 0.00 0.00 43.23 3.28
405 406 1.692411 GCCTGGAAAGGACAGTTGTT 58.308 50.000 0.00 0.00 34.16 2.83
411 412 2.429930 CACCGCCTGGAAAGGACA 59.570 61.111 0.00 0.00 39.21 4.02
431 432 4.083155 TGGAGTTCCATAGGGGGC 57.917 61.111 0.00 0.00 42.01 5.80
572 573 1.281656 CGGTCTTTGCCGTTGGAAC 59.718 57.895 0.00 0.00 46.11 3.62
585 586 1.004440 GTCAAGCTTGGCTCGGTCT 60.004 57.895 23.67 0.00 38.25 3.85
633 639 4.741239 TCCCTCCCTGCCCCACTC 62.741 72.222 0.00 0.00 0.00 3.51
642 648 1.151721 CCCATATGCCTCCCTCCCT 60.152 63.158 0.00 0.00 0.00 4.20
649 655 6.374417 TTTTACTATCCTCCCATATGCCTC 57.626 41.667 0.00 0.00 0.00 4.70
668 674 1.320507 GGACACAACGCCCCTTTTTA 58.679 50.000 0.00 0.00 0.00 1.52
763 769 0.683179 ATTCCCCGCCTAACTTTGGC 60.683 55.000 4.29 4.29 46.42 4.52
769 775 1.125633 TGACCTATTCCCCGCCTAAC 58.874 55.000 0.00 0.00 0.00 2.34
793 799 1.604755 CAAATGTCGGTTTTCGGTCCA 59.395 47.619 0.00 0.00 39.77 4.02
830 836 3.610669 AAAACGCGGCCCAATGCA 61.611 55.556 12.47 0.00 43.89 3.96
843 849 2.300433 AGGGGTAAACGGACACAAAAC 58.700 47.619 0.00 0.00 0.00 2.43
852 858 2.029110 TCGTCTGTTTAGGGGTAAACGG 60.029 50.000 9.62 9.62 43.88 4.44
863 869 1.888018 CTCCGGCCTCGTCTGTTTA 59.112 57.895 0.00 0.00 33.95 2.01
950 956 0.371645 GCTTCGTGCTGCAGTATGAC 59.628 55.000 24.21 11.77 37.11 3.06
965 971 0.933047 GAAACACGGGCGTTTGCTTC 60.933 55.000 4.83 0.00 39.17 3.86
1093 2249 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1094 2250 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1095 2251 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
1096 2252 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
1097 2253 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
1098 2254 0.996762 TCCTCTCCCTCTCCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
1117 2306 1.403687 GGGTCAGGATAGGAGCGCTT 61.404 60.000 13.26 0.00 33.71 4.68
1166 2358 3.374058 GGGAATGTCGACGAAATCATTGT 59.626 43.478 14.65 0.00 31.87 2.71
1287 2479 1.170290 TGTCGTCGCTCTGACCTGAA 61.170 55.000 0.00 0.00 45.23 3.02
1510 2708 2.276409 GGAGATGGGCATGCACCA 59.724 61.111 24.35 24.35 43.22 4.17
1582 2780 0.608582 AGGCGTTGTACTCGGAGACT 60.609 55.000 12.86 0.00 0.00 3.24
1864 3071 0.314302 CCAAGGATAGGGACGTAGCG 59.686 60.000 0.00 0.00 0.00 4.26
2038 3269 2.818132 GCCGAGATGGGTGAGGAG 59.182 66.667 0.00 0.00 38.63 3.69
2073 3304 1.154205 GCCCCACATCGATCAAGACG 61.154 60.000 0.00 0.00 0.00 4.18
2115 3346 2.171725 GGTGGAGATAACGGCGTGC 61.172 63.158 15.70 6.49 0.00 5.34
2128 3359 4.344865 GCCAAGGCGGAAGGTGGA 62.345 66.667 0.00 0.00 36.56 4.02
2145 3376 2.693864 ACATGGGAGGGCTCAGGG 60.694 66.667 0.00 0.00 28.45 4.45
2211 3442 9.229784 CATAATTCAAAATCTTGGATGTCTTCG 57.770 33.333 0.00 0.00 30.58 3.79
2223 3454 8.358582 ACTGGAGAAAGCATAATTCAAAATCT 57.641 30.769 0.00 0.00 0.00 2.40
2226 3457 9.077885 ACTTACTGGAGAAAGCATAATTCAAAA 57.922 29.630 0.00 0.00 0.00 2.44
2268 3499 6.653526 AAATGAATGCATGGATCGGATTAA 57.346 33.333 0.00 0.00 34.26 1.40
2270 3501 5.294356 CAAAATGAATGCATGGATCGGATT 58.706 37.500 0.00 0.00 34.26 3.01
2271 3502 4.262292 CCAAAATGAATGCATGGATCGGAT 60.262 41.667 0.00 0.00 34.26 4.18
2272 3503 3.068448 CCAAAATGAATGCATGGATCGGA 59.932 43.478 0.00 0.00 34.26 4.55
2273 3504 3.181473 ACCAAAATGAATGCATGGATCGG 60.181 43.478 0.00 0.00 34.26 4.18
2274 3505 4.046462 GACCAAAATGAATGCATGGATCG 58.954 43.478 0.00 0.00 34.26 3.69
2275 3506 4.046462 CGACCAAAATGAATGCATGGATC 58.954 43.478 0.00 0.00 34.26 3.36
2297 3545 7.602517 ACTGCATTTGTAAGTAAGATGAGAC 57.397 36.000 0.00 0.00 0.00 3.36
2317 3565 5.463724 CCGGACAGAAGAAGATTAATACTGC 59.536 44.000 0.00 0.00 0.00 4.40
2318 3566 5.463724 GCCGGACAGAAGAAGATTAATACTG 59.536 44.000 5.05 0.00 0.00 2.74
2320 3568 4.750598 GGCCGGACAGAAGAAGATTAATAC 59.249 45.833 5.05 0.00 0.00 1.89
2331 3579 0.387929 TATTAGCGGCCGGACAGAAG 59.612 55.000 29.38 0.00 0.00 2.85
2336 3584 3.241067 TGATTATATTAGCGGCCGGAC 57.759 47.619 29.38 11.53 0.00 4.79
2339 3587 4.870426 AGTGATTGATTATATTAGCGGCCG 59.130 41.667 24.05 24.05 0.00 6.13
2416 3715 0.034670 ATGAAGCACTCCCTCTTGGC 60.035 55.000 0.00 0.00 0.00 4.52
2418 3720 1.093159 GCATGAAGCACTCCCTCTTG 58.907 55.000 0.00 0.00 44.79 3.02
2437 3742 1.202568 TGGATCAATACCTGCAGCGAG 60.203 52.381 8.66 0.00 0.00 5.03
2441 3755 2.357009 GCTTGTGGATCAATACCTGCAG 59.643 50.000 6.78 6.78 35.35 4.41
2482 3796 6.922957 TGCACAAGAAACTTAATTGGAATGAC 59.077 34.615 0.00 0.00 0.00 3.06
2601 3958 3.907221 ACCAGCTTGGCAGATGATAAAT 58.093 40.909 4.19 0.00 42.67 1.40
2681 4050 3.884091 GAGAGGAGTCGCTATTCCTAACA 59.116 47.826 1.98 0.00 41.68 2.41
3028 4424 4.073549 ACTACTACATATCCGGACAGCTC 58.926 47.826 6.12 0.00 0.00 4.09
3329 4725 7.234166 ACATCCTTTCAGTCTTCCAATTTTCAT 59.766 33.333 0.00 0.00 0.00 2.57
3429 4828 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3430 4829 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3431 4830 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3432 4831 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3433 4832 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3434 4833 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3435 4834 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3608 5253 4.302455 CAGAGACTACATGCCTAATTCCG 58.698 47.826 0.00 0.00 0.00 4.30
4154 6122 7.744733 TGCCATCAGTCTATTATATCAAACCA 58.255 34.615 0.00 0.00 0.00 3.67
4161 6129 6.652481 GCACTGTTGCCATCAGTCTATTATAT 59.348 38.462 5.45 0.00 43.14 0.86
4162 6130 5.991606 GCACTGTTGCCATCAGTCTATTATA 59.008 40.000 5.45 0.00 43.14 0.98
4181 6149 5.695851 AGATTGGACTTTTAACTGCACTG 57.304 39.130 0.00 0.00 0.00 3.66
4182 6150 6.507023 CAAAGATTGGACTTTTAACTGCACT 58.493 36.000 0.00 0.00 37.91 4.40
4183 6151 5.175673 GCAAAGATTGGACTTTTAACTGCAC 59.824 40.000 0.00 0.00 37.91 4.57
4184 6152 5.163468 TGCAAAGATTGGACTTTTAACTGCA 60.163 36.000 0.00 0.00 37.91 4.41
4185 6153 5.288804 TGCAAAGATTGGACTTTTAACTGC 58.711 37.500 0.00 0.00 37.91 4.40
4234 6202 6.190954 ACCTGTTGTTCTTGTTCTTGTAAC 57.809 37.500 0.00 0.00 0.00 2.50
4255 6250 7.793036 ACAAGTTAGATTATCTGGGAGTAACC 58.207 38.462 4.78 0.00 38.08 2.85
4257 6252 8.483758 GGAACAAGTTAGATTATCTGGGAGTAA 58.516 37.037 4.78 0.00 0.00 2.24
4269 6264 9.981460 AAGAATAATCTGGGAACAAGTTAGATT 57.019 29.630 11.84 11.84 42.06 2.40
4271 6266 9.807921 AAAAGAATAATCTGGGAACAAGTTAGA 57.192 29.630 0.00 0.00 42.06 2.10
4299 6294 7.121382 AGAATAATCTGGGATCTGCTCAAAAA 58.879 34.615 0.00 0.00 33.59 1.94
4300 6295 6.666678 AGAATAATCTGGGATCTGCTCAAAA 58.333 36.000 0.00 0.00 33.59 2.44
4301 6296 6.257994 AGAATAATCTGGGATCTGCTCAAA 57.742 37.500 0.00 0.00 33.59 2.69
4302 6297 5.901413 AGAATAATCTGGGATCTGCTCAA 57.099 39.130 0.00 0.00 33.59 3.02
4303 6298 5.901413 AAGAATAATCTGGGATCTGCTCA 57.099 39.130 0.00 0.00 35.59 4.26
4304 6299 8.153550 TCTAAAAGAATAATCTGGGATCTGCTC 58.846 37.037 0.00 0.00 35.59 4.26
4305 6300 8.038862 TCTAAAAGAATAATCTGGGATCTGCT 57.961 34.615 0.00 0.00 35.59 4.24
4306 6301 8.682936 TTCTAAAAGAATAATCTGGGATCTGC 57.317 34.615 0.00 0.00 35.59 4.26
4320 6315 9.739276 TGTGAGGACATGTTATTCTAAAAGAAT 57.261 29.630 0.00 7.29 46.01 2.40
4321 6316 9.567776 TTGTGAGGACATGTTATTCTAAAAGAA 57.432 29.630 0.00 0.00 33.29 2.52
4322 6317 9.739276 ATTGTGAGGACATGTTATTCTAAAAGA 57.261 29.630 0.00 0.00 30.13 2.52
4328 6323 9.334947 CAGAATATTGTGAGGACATGTTATTCT 57.665 33.333 14.92 14.92 38.32 2.40
4329 6324 9.113838 ACAGAATATTGTGAGGACATGTTATTC 57.886 33.333 18.70 7.13 33.78 1.75
4330 6325 9.466497 AACAGAATATTGTGAGGACATGTTATT 57.534 29.630 18.70 0.00 29.92 1.40
4332 6327 9.378551 GTAACAGAATATTGTGAGGACATGTTA 57.621 33.333 18.70 2.48 32.62 2.41
4333 6328 7.882791 TGTAACAGAATATTGTGAGGACATGTT 59.117 33.333 18.70 3.36 34.07 2.71
4334 6329 7.394016 TGTAACAGAATATTGTGAGGACATGT 58.606 34.615 18.70 0.00 30.13 3.21
4335 6330 7.848223 TGTAACAGAATATTGTGAGGACATG 57.152 36.000 18.70 0.00 30.13 3.21
4336 6331 7.336931 GGTTGTAACAGAATATTGTGAGGACAT 59.663 37.037 18.70 0.00 30.13 3.06
4337 6332 6.653320 GGTTGTAACAGAATATTGTGAGGACA 59.347 38.462 18.70 14.61 0.00 4.02
4338 6333 6.653320 TGGTTGTAACAGAATATTGTGAGGAC 59.347 38.462 18.70 12.57 0.00 3.85
4370 6365 2.330216 AGATGGCTACCACCCTATGTC 58.670 52.381 0.00 0.00 35.80 3.06
4389 6384 4.882671 ATGCAGCTACCGAAATACAAAG 57.117 40.909 0.00 0.00 0.00 2.77
4429 6424 5.109662 GGTAACAAAGGAAAGAGCTCAAC 57.890 43.478 17.77 6.39 0.00 3.18
4465 6464 1.398390 CGAGTATTTGCTGCTTCCCAC 59.602 52.381 0.00 0.00 0.00 4.61
4481 6480 4.857588 CGATGTTTTCAAGCTACTACGAGT 59.142 41.667 0.00 0.00 0.00 4.18
4488 6487 6.091441 ACTCAAGATCGATGTTTTCAAGCTAC 59.909 38.462 0.54 0.00 0.00 3.58
4491 6490 5.288543 ACTCAAGATCGATGTTTTCAAGC 57.711 39.130 0.54 0.00 0.00 4.01
4737 6744 4.492160 TCGCCGCAGATCGACACC 62.492 66.667 0.00 0.00 41.67 4.16
4828 6835 1.258445 TTGGAGAAGCCGACCTCCTC 61.258 60.000 9.49 0.00 46.94 3.71
4829 6836 1.229209 TTGGAGAAGCCGACCTCCT 60.229 57.895 9.49 0.00 46.94 3.69
4830 6837 1.219393 CTTGGAGAAGCCGACCTCC 59.781 63.158 0.00 0.00 46.99 4.30
4831 6838 4.921834 CTTGGAGAAGCCGACCTC 57.078 61.111 0.00 0.00 40.66 3.85
4870 6877 1.445754 CTCTGCTCTGCCTGTCACG 60.446 63.158 0.00 0.00 0.00 4.35
5029 7036 3.647590 ACTGAACCTGCAATCCCAAAATT 59.352 39.130 0.00 0.00 0.00 1.82
5055 7062 9.162764 GTAATGAACATGTTACAGTAATGGACT 57.837 33.333 11.95 0.00 39.82 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.