Multiple sequence alignment - TraesCS2D01G480300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G480300 chr2D 100.000 6281 0 0 1 6281 582030107 582023827 0.000000e+00 11599.0
1 TraesCS2D01G480300 chr2D 76.822 1441 214 74 2971 4367 582707067 582708431 0.000000e+00 701.0
2 TraesCS2D01G480300 chr2D 84.375 192 22 6 240 430 582703279 582703463 1.390000e-41 182.0
3 TraesCS2D01G480300 chr2D 94.000 100 6 0 6180 6279 638336327 638336426 1.090000e-32 152.0
4 TraesCS2D01G480300 chr2D 100.000 36 0 0 3944 3979 582026063 582026028 4.060000e-07 67.6
5 TraesCS2D01G480300 chr2D 100.000 36 0 0 4045 4080 582026164 582026129 4.060000e-07 67.6
6 TraesCS2D01G480300 chr2D 100.000 34 0 0 1089 1122 582028579 582028546 5.260000e-06 63.9
7 TraesCS2D01G480300 chr2D 100.000 34 0 0 1529 1562 582029019 582028986 5.260000e-06 63.9
8 TraesCS2D01G480300 chr2B 95.778 6205 143 35 1 6170 701100813 701094693 0.000000e+00 9897.0
9 TraesCS2D01G480300 chr2B 76.108 1444 222 77 2971 4367 701761578 701762945 5.310000e-180 641.0
10 TraesCS2D01G480300 chr2B 83.511 188 26 4 240 427 701757655 701757837 3.010000e-38 171.0
11 TraesCS2D01G480300 chr2B 95.833 96 4 0 6184 6279 5788431 5788526 8.430000e-34 156.0
12 TraesCS2D01G480300 chr2B 100.000 34 0 0 1089 1122 701099261 701099228 5.260000e-06 63.9
13 TraesCS2D01G480300 chr3D 75.730 1438 223 79 2971 4367 577912161 577910809 1.940000e-169 606.0
14 TraesCS2D01G480300 chr3D 94.737 95 5 0 6185 6279 486688949 486688855 1.410000e-31 148.0
15 TraesCS2D01G480300 chr3D 84.821 112 14 1 1846 1954 577913028 577912917 6.660000e-20 110.0
16 TraesCS2D01G480300 chr3D 100.000 31 0 0 2493 2523 577912588 577912558 2.450000e-04 58.4
17 TraesCS2D01G480300 chr3B 75.035 1442 233 78 2971 4367 771000124 771001483 9.200000e-153 551.0
18 TraesCS2D01G480300 chr3B 76.382 995 139 56 2971 3923 771005141 771004201 1.240000e-121 448.0
19 TraesCS2D01G480300 chr3B 75.403 992 133 67 2971 3923 770985737 770984818 1.650000e-100 377.0
20 TraesCS2D01G480300 chr3B 77.196 649 115 19 4850 5483 770982278 770982908 1.300000e-91 348.0
21 TraesCS2D01G480300 chr3B 77.457 346 31 24 2971 3290 770980507 770980831 5.040000e-36 163.0
22 TraesCS2D01G480300 chr3B 95.918 98 3 1 6184 6281 679519885 679519789 2.340000e-34 158.0
23 TraesCS2D01G480300 chr3B 86.607 112 12 2 1846 1954 770979320 770979431 3.080000e-23 121.0
24 TraesCS2D01G480300 chr3B 86.364 110 12 2 1848 1954 770999014 770999123 3.980000e-22 117.0
25 TraesCS2D01G480300 chr2A 78.121 809 111 39 4851 5633 690315797 690315029 2.670000e-123 453.0
26 TraesCS2D01G480300 chr6A 96.907 97 3 0 6185 6281 14750495 14750591 5.040000e-36 163.0
27 TraesCS2D01G480300 chr6D 94.792 96 4 1 6184 6279 162273697 162273603 1.410000e-31 148.0
28 TraesCS2D01G480300 chr1D 93.939 99 5 1 6181 6279 81458829 81458732 1.410000e-31 148.0
29 TraesCS2D01G480300 chr5B 93.750 96 6 0 6184 6279 586360524 586360619 1.820000e-30 145.0
30 TraesCS2D01G480300 chr5B 92.708 96 5 2 6184 6279 13534859 13534766 3.050000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G480300 chr2D 582023827 582030107 6280 True 11599.000000 11599 100.000000 1 6281 1 chr2D.!!$R1 6280
1 TraesCS2D01G480300 chr2D 582703279 582708431 5152 False 441.500000 701 80.598500 240 4367 2 chr2D.!!$F2 4127
2 TraesCS2D01G480300 chr2B 701094693 701100813 6120 True 4980.450000 9897 97.889000 1 6170 2 chr2B.!!$R1 6169
3 TraesCS2D01G480300 chr2B 701757655 701762945 5290 False 406.000000 641 79.809500 240 4367 2 chr2B.!!$F2 4127
4 TraesCS2D01G480300 chr3D 577910809 577913028 2219 True 258.133333 606 86.850333 1846 4367 3 chr3D.!!$R2 2521
5 TraesCS2D01G480300 chr3B 771004201 771005141 940 True 448.000000 448 76.382000 2971 3923 1 chr3B.!!$R3 952
6 TraesCS2D01G480300 chr3B 770984818 770985737 919 True 377.000000 377 75.403000 2971 3923 1 chr3B.!!$R2 952
7 TraesCS2D01G480300 chr3B 770999014 771001483 2469 False 334.000000 551 80.699500 1848 4367 2 chr3B.!!$F2 2519
8 TraesCS2D01G480300 chr3B 770979320 770982908 3588 False 210.666667 348 80.420000 1846 5483 3 chr3B.!!$F1 3637
9 TraesCS2D01G480300 chr2A 690315029 690315797 768 True 453.000000 453 78.121000 4851 5633 1 chr2A.!!$R1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 1.674441 CAGCCTGTCATTGCACCATAG 59.326 52.381 0.00 0.00 0.0 2.23 F
1031 1186 0.871722 CGAAACGCTTGGTGGATTCA 59.128 50.000 0.00 0.00 0.0 2.57 F
2219 3478 1.136891 CATGCATCCGAGTACTCCACA 59.863 52.381 17.23 8.55 0.0 4.17 F
3960 6085 0.108585 TTTCTCGGAGCTTGCCAACT 59.891 50.000 0.00 0.00 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1365 0.937304 TGTTTCGTGCAGTTCTGAGC 59.063 50.0 3.84 0.00 0.00 4.26 R
2263 3522 0.889994 CATCACATGTGTGGTTGGGG 59.110 55.0 24.63 4.05 45.65 4.96 R
3971 6096 0.029967 GAGCTGCGTGATCATCTCGA 59.970 55.0 13.22 0.00 35.64 4.04 R
5367 7547 0.329596 GAGACCAACCCAATGGCTCT 59.670 55.0 0.00 5.01 44.75 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.928005 ACTTCAGTGGAGATGATGCAT 57.072 42.857 5.11 0.00 0.00 3.96
97 98 8.389603 CAAATGCTCAGAAGATTCTAAGTTCTC 58.610 37.037 0.00 0.00 35.34 2.87
123 124 4.280425 TGCACATTTGGCAGAAATACTCAA 59.720 37.500 0.00 0.00 36.11 3.02
126 127 7.035004 GCACATTTGGCAGAAATACTCAATTA 58.965 34.615 0.00 0.00 0.00 1.40
130 131 4.854173 TGGCAGAAATACTCAATTAGCCA 58.146 39.130 0.00 0.00 42.81 4.75
137 138 5.379706 AATACTCAATTAGCCAGCCTCTT 57.620 39.130 0.00 0.00 0.00 2.85
163 164 1.674441 CAGCCTGTCATTGCACCATAG 59.326 52.381 0.00 0.00 0.00 2.23
200 201 2.555325 CAGCCATGCAAAGACTTTGAGA 59.445 45.455 28.15 15.40 43.26 3.27
212 213 6.610741 AAGACTTTGAGAACTGTGATTGTC 57.389 37.500 0.00 0.00 0.00 3.18
622 671 7.395190 TCTTGCAATGCATTGTTAGTTATCT 57.605 32.000 33.67 0.00 38.76 1.98
677 726 6.646240 GCAGATCTAGAGATTTCATCCAAGTC 59.354 42.308 0.00 0.00 34.37 3.01
744 793 6.265422 TCCTCCTCTCATTTTTCTTGTTTTCC 59.735 38.462 0.00 0.00 0.00 3.13
900 1041 4.862574 TCATCGTGTTGAGGTTTCTTATCG 59.137 41.667 0.00 0.00 0.00 2.92
1030 1185 3.676091 CGAAACGCTTGGTGGATTC 57.324 52.632 0.00 0.00 0.00 2.52
1031 1186 0.871722 CGAAACGCTTGGTGGATTCA 59.128 50.000 0.00 0.00 0.00 2.57
1055 1210 3.325870 CAGATGGTGCTGAAACTCGTAA 58.674 45.455 0.00 0.00 38.14 3.18
1056 1211 3.369147 CAGATGGTGCTGAAACTCGTAAG 59.631 47.826 0.00 0.00 38.14 2.34
1161 1317 6.986424 TCGTCAATTATTATGTAGACGCTG 57.014 37.500 7.79 0.00 45.82 5.18
1186 1342 7.337689 TGGAAGGACAGAGACAATTCAATATTG 59.662 37.037 9.29 9.29 35.29 1.90
1209 1365 3.034569 GCATAAGGCGCAACAAAGG 57.965 52.632 10.83 0.00 0.00 3.11
1281 1437 9.636965 GAGTACATTTTTGCTTTGCTTAAAAAG 57.363 29.630 0.00 0.00 36.91 2.27
1307 1463 6.546034 ACCAACAGTTTCAATTTAGTAGTGCT 59.454 34.615 0.00 0.00 0.00 4.40
1912 2470 6.801377 TGTTATGATTTTGTCAACGAGCATTC 59.199 34.615 4.71 1.70 40.97 2.67
2103 3043 8.299570 ACACTTAGGAGCAACTTAAAATGATTG 58.700 33.333 0.00 0.00 0.00 2.67
2135 3394 3.054679 TTGTGCATGACAAGCCCAT 57.945 47.368 0.00 0.00 39.78 4.00
2219 3478 1.136891 CATGCATCCGAGTACTCCACA 59.863 52.381 17.23 8.55 0.00 4.17
2263 3522 2.275318 CCATCGAAGAGGCTTTCAGTC 58.725 52.381 0.00 0.00 43.63 3.51
2353 3615 3.530265 TCGTGAACCATATGTACCACC 57.470 47.619 1.24 0.00 30.97 4.61
2550 4271 5.008118 GCTGGTGCTATAGAAGGAAATTGTC 59.992 44.000 3.21 0.00 36.03 3.18
2616 4492 5.248640 TGTCTTGATCAGATGTTTCCCTTC 58.751 41.667 0.00 0.00 32.60 3.46
2631 4507 2.565391 TCCCTTCGCTAAGAACACATCA 59.435 45.455 0.00 0.00 34.37 3.07
2762 4638 3.636231 CAGAGCCCCACCCGTTGA 61.636 66.667 0.00 0.00 0.00 3.18
2763 4639 2.610859 AGAGCCCCACCCGTTGAT 60.611 61.111 0.00 0.00 0.00 2.57
2764 4640 2.231380 AGAGCCCCACCCGTTGATT 61.231 57.895 0.00 0.00 0.00 2.57
2766 4642 0.463833 GAGCCCCACCCGTTGATTAG 60.464 60.000 0.00 0.00 0.00 1.73
2767 4643 0.912487 AGCCCCACCCGTTGATTAGA 60.912 55.000 0.00 0.00 0.00 2.10
2768 4644 0.463833 GCCCCACCCGTTGATTAGAG 60.464 60.000 0.00 0.00 0.00 2.43
2769 4645 0.180406 CCCCACCCGTTGATTAGAGG 59.820 60.000 0.00 0.00 0.00 3.69
2770 4646 0.463833 CCCACCCGTTGATTAGAGGC 60.464 60.000 0.00 0.00 0.00 4.70
2772 4648 0.251916 CACCCGTTGATTAGAGGCCA 59.748 55.000 5.01 0.00 0.00 5.36
2775 4651 2.368875 ACCCGTTGATTAGAGGCCATAG 59.631 50.000 5.01 0.00 0.00 2.23
2776 4652 2.417719 CCGTTGATTAGAGGCCATAGC 58.582 52.381 5.01 0.00 38.76 2.97
3274 5370 8.860088 GCCTAGGTTGTAATCAAATTCCATAAT 58.140 33.333 11.31 0.00 35.20 1.28
3539 5639 7.981540 GTTTGTTAAAACCTTCGAGTACGACTG 60.982 40.741 0.00 0.00 42.57 3.51
3618 5718 4.299586 TGGTATTGAGCAACCTCATGAA 57.700 40.909 0.00 0.00 46.84 2.57
3704 5808 6.603095 CGCATACTGAAAAACTTTCTAGCTT 58.397 36.000 0.00 0.00 0.00 3.74
3763 5867 1.527034 TTGCCACAATGCTCAGAGAC 58.473 50.000 0.00 0.00 0.00 3.36
3947 6072 7.069852 AGATGATTCATTCTTGTGTTTCTCG 57.930 36.000 0.00 0.00 0.00 4.04
3949 6074 5.304778 TGATTCATTCTTGTGTTTCTCGGA 58.695 37.500 0.00 0.00 0.00 4.55
3950 6075 5.409520 TGATTCATTCTTGTGTTTCTCGGAG 59.590 40.000 0.00 0.00 0.00 4.63
3951 6076 3.067106 TCATTCTTGTGTTTCTCGGAGC 58.933 45.455 0.00 0.00 0.00 4.70
3952 6077 2.910688 TTCTTGTGTTTCTCGGAGCT 57.089 45.000 0.00 0.00 0.00 4.09
3953 6078 2.910688 TCTTGTGTTTCTCGGAGCTT 57.089 45.000 0.00 0.00 0.00 3.74
3954 6079 2.483876 TCTTGTGTTTCTCGGAGCTTG 58.516 47.619 0.00 0.00 0.00 4.01
3955 6080 0.944386 TTGTGTTTCTCGGAGCTTGC 59.056 50.000 0.00 0.00 0.00 4.01
3956 6081 0.884704 TGTGTTTCTCGGAGCTTGCC 60.885 55.000 0.00 0.00 0.00 4.52
3957 6082 0.884704 GTGTTTCTCGGAGCTTGCCA 60.885 55.000 0.00 0.00 0.00 4.92
3958 6083 0.179032 TGTTTCTCGGAGCTTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
3959 6084 0.238553 GTTTCTCGGAGCTTGCCAAC 59.761 55.000 0.00 0.00 0.00 3.77
3960 6085 0.108585 TTTCTCGGAGCTTGCCAACT 59.891 50.000 0.00 0.00 0.00 3.16
3961 6086 0.973632 TTCTCGGAGCTTGCCAACTA 59.026 50.000 0.00 0.00 0.00 2.24
3962 6087 1.195115 TCTCGGAGCTTGCCAACTAT 58.805 50.000 0.00 0.00 0.00 2.12
3963 6088 1.134699 TCTCGGAGCTTGCCAACTATG 60.135 52.381 0.00 0.00 0.00 2.23
3964 6089 0.613260 TCGGAGCTTGCCAACTATGT 59.387 50.000 0.00 0.00 0.00 2.29
3965 6090 0.729116 CGGAGCTTGCCAACTATGTG 59.271 55.000 0.00 0.00 0.00 3.21
3966 6091 1.675714 CGGAGCTTGCCAACTATGTGA 60.676 52.381 0.00 0.00 0.00 3.58
3967 6092 1.740025 GGAGCTTGCCAACTATGTGAC 59.260 52.381 0.00 0.00 0.00 3.67
3968 6093 2.616510 GGAGCTTGCCAACTATGTGACT 60.617 50.000 0.00 0.00 0.00 3.41
3969 6094 3.077359 GAGCTTGCCAACTATGTGACTT 58.923 45.455 0.00 0.00 0.00 3.01
3970 6095 2.816087 AGCTTGCCAACTATGTGACTTG 59.184 45.455 0.00 0.00 0.00 3.16
3971 6096 2.554032 GCTTGCCAACTATGTGACTTGT 59.446 45.455 0.00 0.00 0.00 3.16
3972 6097 3.365364 GCTTGCCAACTATGTGACTTGTC 60.365 47.826 0.00 0.00 0.00 3.18
3973 6098 2.412870 TGCCAACTATGTGACTTGTCG 58.587 47.619 0.00 0.00 0.00 4.35
3974 6099 2.036604 TGCCAACTATGTGACTTGTCGA 59.963 45.455 0.00 0.00 0.00 4.20
3975 6100 2.668457 GCCAACTATGTGACTTGTCGAG 59.332 50.000 0.00 0.00 0.00 4.04
3976 6101 3.614150 GCCAACTATGTGACTTGTCGAGA 60.614 47.826 0.00 0.00 0.00 4.04
3977 6102 4.748892 CCAACTATGTGACTTGTCGAGAT 58.251 43.478 0.00 0.00 0.00 2.75
3988 6113 0.526310 TGTCGAGATGATCACGCAGC 60.526 55.000 7.40 1.77 30.66 5.25
4018 6143 0.597637 AACTTCTCCATATCGCGGCG 60.598 55.000 17.70 17.70 0.00 6.46
4065 6190 0.613260 TCGGAGCTTGCCAACTATGT 59.387 50.000 0.00 0.00 0.00 2.29
4298 6431 7.145323 AGTACAGCACAATGTGGAAAATAAAC 58.855 34.615 15.78 0.00 34.56 2.01
4300 6433 6.581712 ACAGCACAATGTGGAAAATAAACTT 58.418 32.000 15.78 0.00 33.64 2.66
4540 6688 1.539827 ACCGCCGAAGAAAAATTGGAG 59.460 47.619 0.00 0.00 0.00 3.86
4637 6790 2.335316 TCGCTACCCGGCATTTAAAT 57.665 45.000 0.00 0.00 37.59 1.40
4657 6813 6.655078 AAATGGTACTTCTTGCATGACTTT 57.345 33.333 1.02 0.00 0.00 2.66
4685 6841 5.907866 TGAACTAGAACGTGACCATGATA 57.092 39.130 0.00 0.00 0.00 2.15
4693 6849 2.051423 CGTGACCATGATATCCGTTCG 58.949 52.381 0.00 0.94 0.00 3.95
4743 6902 3.254060 ACAATCTCTTCACGTTCATCCG 58.746 45.455 0.00 0.00 0.00 4.18
4760 6919 1.140252 TCCGCCCTGGAAGTAATAAGC 59.860 52.381 0.00 0.00 46.38 3.09
4761 6920 1.217882 CGCCCTGGAAGTAATAAGCG 58.782 55.000 0.00 0.00 36.06 4.68
4770 6929 4.630069 TGGAAGTAATAAGCGACTCAAAGC 59.370 41.667 0.00 0.00 0.00 3.51
4820 6979 6.097412 GCATGGATCCCAGTTTAGAAAGAATT 59.903 38.462 9.90 0.00 36.75 2.17
4821 6980 7.364144 GCATGGATCCCAGTTTAGAAAGAATTT 60.364 37.037 9.90 0.00 37.89 1.82
5149 7308 5.505173 AAACATGACGGATGATTGGATTC 57.495 39.130 0.00 0.00 35.80 2.52
5367 7547 2.021457 TGAGATCGACGGCAATGTCTA 58.979 47.619 0.00 0.00 36.71 2.59
5446 7628 2.860628 CTGCGTCGCTTGTATCGGC 61.861 63.158 19.50 0.00 0.00 5.54
5527 7715 0.240945 GCATGTGTTTTGGTCCCTCG 59.759 55.000 0.00 0.00 0.00 4.63
5542 7730 2.764572 TCCCTCGGACCTTGTATCTTTC 59.235 50.000 0.00 0.00 0.00 2.62
5543 7731 2.500098 CCCTCGGACCTTGTATCTTTCA 59.500 50.000 0.00 0.00 0.00 2.69
5544 7732 3.134804 CCCTCGGACCTTGTATCTTTCAT 59.865 47.826 0.00 0.00 0.00 2.57
5738 7927 0.944386 TTGACTTTTCTGTCCGCTGC 59.056 50.000 0.00 0.00 36.21 5.25
5775 7964 1.140312 AGTGGTGTTGGGATGACAGT 58.860 50.000 0.00 0.00 0.00 3.55
5851 8040 7.495934 GCATCCTTAGACTAAATACAAGAGCAA 59.504 37.037 0.00 0.00 0.00 3.91
6074 8263 4.022416 CGGTGGGAACAATTCAAGATTTCA 60.022 41.667 0.00 0.00 46.06 2.69
6096 8285 3.755378 ACTTCATGATGGCTGTTCTCAAC 59.245 43.478 12.76 0.00 0.00 3.18
6097 8286 3.708403 TCATGATGGCTGTTCTCAACT 57.292 42.857 0.00 0.00 0.00 3.16
6209 8398 7.903995 TTTTTGAGACAATTCACAAAGCTTT 57.096 28.000 5.69 5.69 41.49 3.51
6210 8399 8.994429 TTTTTGAGACAATTCACAAAGCTTTA 57.006 26.923 12.25 0.00 41.49 1.85
6211 8400 9.598517 TTTTTGAGACAATTCACAAAGCTTTAT 57.401 25.926 12.25 0.00 41.49 1.40
6212 8401 9.598517 TTTTGAGACAATTCACAAAGCTTTATT 57.401 25.926 12.25 5.23 41.49 1.40
6215 8404 9.844790 TGAGACAATTCACAAAGCTTTATTATG 57.155 29.630 12.25 8.30 0.00 1.90
6216 8405 9.846248 GAGACAATTCACAAAGCTTTATTATGT 57.154 29.630 12.25 11.95 0.00 2.29
6217 8406 9.846248 AGACAATTCACAAAGCTTTATTATGTC 57.154 29.630 21.79 21.79 33.11 3.06
6218 8407 8.673626 ACAATTCACAAAGCTTTATTATGTCG 57.326 30.769 12.25 0.00 0.00 4.35
6219 8408 8.296713 ACAATTCACAAAGCTTTATTATGTCGT 58.703 29.630 12.25 0.00 0.00 4.34
6220 8409 8.788813 CAATTCACAAAGCTTTATTATGTCGTC 58.211 33.333 12.25 0.00 0.00 4.20
6221 8410 7.428282 TTCACAAAGCTTTATTATGTCGTCA 57.572 32.000 12.25 0.00 0.00 4.35
6222 8411 7.609760 TCACAAAGCTTTATTATGTCGTCAT 57.390 32.000 12.25 0.00 38.00 3.06
6223 8412 7.684670 TCACAAAGCTTTATTATGTCGTCATC 58.315 34.615 12.25 0.00 35.70 2.92
6224 8413 7.333174 TCACAAAGCTTTATTATGTCGTCATCA 59.667 33.333 12.25 0.00 35.70 3.07
6225 8414 7.637519 CACAAAGCTTTATTATGTCGTCATCAG 59.362 37.037 12.25 0.00 35.70 2.90
6226 8415 7.334421 ACAAAGCTTTATTATGTCGTCATCAGT 59.666 33.333 12.25 0.00 35.70 3.41
6227 8416 7.849804 AAGCTTTATTATGTCGTCATCAGTT 57.150 32.000 0.00 0.00 35.70 3.16
6228 8417 7.239166 AGCTTTATTATGTCGTCATCAGTTG 57.761 36.000 0.00 0.00 35.70 3.16
6229 8418 7.041721 AGCTTTATTATGTCGTCATCAGTTGA 58.958 34.615 0.00 0.00 35.70 3.18
6230 8419 7.549134 AGCTTTATTATGTCGTCATCAGTTGAA 59.451 33.333 0.00 0.00 35.70 2.69
6231 8420 7.636359 GCTTTATTATGTCGTCATCAGTTGAAC 59.364 37.037 0.00 0.00 35.70 3.18
6232 8421 7.534085 TTATTATGTCGTCATCAGTTGAACC 57.466 36.000 0.00 0.00 35.70 3.62
6233 8422 1.778334 TGTCGTCATCAGTTGAACCG 58.222 50.000 0.00 0.00 35.70 4.44
6234 8423 1.068474 GTCGTCATCAGTTGAACCGG 58.932 55.000 0.00 0.00 35.70 5.28
6235 8424 0.037697 TCGTCATCAGTTGAACCGGG 60.038 55.000 6.32 0.00 35.70 5.73
6236 8425 0.037697 CGTCATCAGTTGAACCGGGA 60.038 55.000 6.32 0.00 35.70 5.14
6237 8426 1.439679 GTCATCAGTTGAACCGGGAC 58.560 55.000 6.32 0.00 35.70 4.46
6238 8427 2.265706 GTCATCAGTTGAACCGGGACG 61.266 57.143 6.32 0.00 44.74 4.79
6252 8441 2.096220 GGGACGAAAGAGAGGTTTCC 57.904 55.000 0.00 0.00 33.55 3.13
6253 8442 1.672145 GGGACGAAAGAGAGGTTTCCG 60.672 57.143 0.00 0.00 33.55 4.30
6254 8443 1.672145 GGACGAAAGAGAGGTTTCCGG 60.672 57.143 0.00 0.00 33.55 5.14
6255 8444 0.320697 ACGAAAGAGAGGTTTCCGGG 59.679 55.000 0.00 0.00 33.55 5.73
6256 8445 0.391263 CGAAAGAGAGGTTTCCGGGG 60.391 60.000 0.00 0.00 33.55 5.73
6257 8446 0.691332 GAAAGAGAGGTTTCCGGGGT 59.309 55.000 0.00 0.00 31.29 4.95
6258 8447 0.400594 AAAGAGAGGTTTCCGGGGTG 59.599 55.000 0.00 0.00 0.00 4.61
6259 8448 0.473117 AAGAGAGGTTTCCGGGGTGA 60.473 55.000 0.00 0.00 0.00 4.02
6260 8449 1.192803 AGAGAGGTTTCCGGGGTGAC 61.193 60.000 0.00 0.00 0.00 3.67
6273 8462 2.908817 GGTGACCTAACCACACACG 58.091 57.895 0.00 0.00 40.22 4.49
6274 8463 0.601841 GGTGACCTAACCACACACGG 60.602 60.000 0.00 0.00 40.22 4.94
6275 8464 1.070105 TGACCTAACCACACACGGC 59.930 57.895 0.00 0.00 0.00 5.68
6276 8465 2.025418 GACCTAACCACACACGGCG 61.025 63.158 4.80 4.80 0.00 6.46
6277 8466 2.740826 CCTAACCACACACGGCGG 60.741 66.667 13.24 2.35 0.00 6.13
6278 8467 3.419759 CTAACCACACACGGCGGC 61.420 66.667 13.24 0.00 0.00 6.53
6279 8468 3.876589 CTAACCACACACGGCGGCT 62.877 63.158 13.24 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.815856 TCTGAGCATTTGTTTTGGCAA 57.184 38.095 0.00 0.00 0.00 4.52
97 98 2.350899 TTTCTGCCAAATGTGCATCG 57.649 45.000 0.00 0.00 38.22 3.84
123 124 1.140652 GCAGAGAAGAGGCTGGCTAAT 59.859 52.381 2.77 0.00 32.83 1.73
126 127 1.901654 CTGCAGAGAAGAGGCTGGCT 61.902 60.000 8.42 2.24 32.83 4.75
130 131 1.613035 AGGCTGCAGAGAAGAGGCT 60.613 57.895 20.43 3.63 37.77 4.58
137 138 0.675837 GCAATGACAGGCTGCAGAGA 60.676 55.000 20.43 0.00 36.09 3.10
163 164 2.745281 TGGCTGCTATACAAAAACCGTC 59.255 45.455 0.00 0.00 0.00 4.79
200 201 2.027745 AGGAGCATCGACAATCACAGTT 60.028 45.455 0.00 0.00 34.37 3.16
212 213 6.132791 TGTACTAGTAAAGAAGGAGCATCG 57.867 41.667 3.61 0.00 34.37 3.84
397 412 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
544 592 2.004733 GGACGCTAACGCTAAACCATT 58.995 47.619 0.00 0.00 45.53 3.16
622 671 6.441924 AGAGATGGAAAAGATGGACTGTTAGA 59.558 38.462 0.00 0.00 0.00 2.10
633 682 5.813383 TCTGCAAGAAGAGATGGAAAAGAT 58.187 37.500 0.00 0.00 42.31 2.40
900 1041 1.466697 CGAAGAGAGAGGAGCACGAAC 60.467 57.143 0.00 0.00 0.00 3.95
1055 1210 6.589135 AGTTTGCTGTAGTTTGTACTAACCT 58.411 36.000 15.23 6.89 38.55 3.50
1056 1211 6.704937 AGAGTTTGCTGTAGTTTGTACTAACC 59.295 38.462 15.23 3.58 38.55 2.85
1094 1249 6.835174 AGCTAATGCATCCATAGAAAGAGAA 58.165 36.000 0.00 0.00 42.74 2.87
1161 1317 7.554118 TCAATATTGAATTGTCTCTGTCCTTCC 59.446 37.037 15.82 0.00 33.55 3.46
1209 1365 0.937304 TGTTTCGTGCAGTTCTGAGC 59.063 50.000 3.84 0.00 0.00 4.26
1260 1416 7.470900 TGGTCTTTTTAAGCAAAGCAAAAATG 58.529 30.769 0.00 0.00 34.26 2.32
1262 1418 7.041098 TGTTGGTCTTTTTAAGCAAAGCAAAAA 60.041 29.630 0.00 0.00 36.04 1.94
1263 1419 6.428159 TGTTGGTCTTTTTAAGCAAAGCAAAA 59.572 30.769 0.00 0.00 36.04 2.44
1264 1420 5.934625 TGTTGGTCTTTTTAAGCAAAGCAAA 59.065 32.000 0.00 0.00 36.04 3.68
1265 1421 5.482908 TGTTGGTCTTTTTAAGCAAAGCAA 58.517 33.333 0.00 0.00 36.04 3.91
1271 1427 6.274157 TGAAACTGTTGGTCTTTTTAAGCA 57.726 33.333 0.00 0.00 0.00 3.91
1281 1437 6.856426 GCACTACTAAATTGAAACTGTTGGTC 59.144 38.462 0.00 0.00 0.00 4.02
1307 1463 6.713276 TGTAGTAGTTGGCATTTTAGGCTAA 58.287 36.000 2.04 2.04 34.73 3.09
1629 1785 9.816354 AAGTTGGACCATGCATATTAAAAATAC 57.184 29.630 0.00 0.00 0.00 1.89
2103 3043 6.917477 TGTCATGCACAAGTAAAAGATTTGTC 59.083 34.615 0.00 0.00 35.93 3.18
2135 3394 5.445069 TCTGTTTGAAGGAGAAATGGTTGA 58.555 37.500 0.00 0.00 0.00 3.18
2219 3478 1.153756 CCCCAGAACCACCAAAGCT 59.846 57.895 0.00 0.00 0.00 3.74
2263 3522 0.889994 CATCACATGTGTGGTTGGGG 59.110 55.000 24.63 4.05 45.65 4.96
2305 3564 1.694150 TGAGCTCCCACTACCATATGC 59.306 52.381 12.15 0.00 0.00 3.14
2353 3615 1.108776 AACAGCAATGCATGGCCTAG 58.891 50.000 22.73 14.90 0.00 3.02
2616 4492 7.295952 AGAGTTAAATGATGTGTTCTTAGCG 57.704 36.000 0.00 0.00 0.00 4.26
2631 4507 8.916628 AGAAGCTCAAAGAGAAAGAGTTAAAT 57.083 30.769 0.00 0.00 0.00 1.40
2677 4553 7.903145 TCAAGTTGGACTACATAGCTTTCTTA 58.097 34.615 2.34 0.00 0.00 2.10
2782 4658 2.280524 TTCACCCGTTGACGCTGG 60.281 61.111 0.00 0.00 38.18 4.85
2783 4659 2.317609 CCTTCACCCGTTGACGCTG 61.318 63.158 0.00 0.00 38.18 5.18
2784 4660 2.030562 CCTTCACCCGTTGACGCT 59.969 61.111 0.00 0.00 38.18 5.07
2785 4661 0.953960 ATTCCTTCACCCGTTGACGC 60.954 55.000 0.00 0.00 38.18 5.19
3274 5370 7.414436 CAGAAATTTCGGTCTAGTTTTTGTGA 58.586 34.615 12.42 0.00 0.00 3.58
3539 5639 2.503920 GCCAATGGCTTCATCATCAC 57.496 50.000 18.47 0.00 46.69 3.06
3704 5808 2.294074 GCACAAGTAAGTCACCACCAA 58.706 47.619 0.00 0.00 0.00 3.67
3868 5980 0.670546 AAGACAACGCACCTCATCCG 60.671 55.000 0.00 0.00 0.00 4.18
3946 6071 0.729116 CACATAGTTGGCAAGCTCCG 59.271 55.000 0.00 0.00 0.00 4.63
3947 6072 1.740025 GTCACATAGTTGGCAAGCTCC 59.260 52.381 0.00 0.00 0.00 4.70
3949 6074 2.816087 CAAGTCACATAGTTGGCAAGCT 59.184 45.455 0.00 3.83 35.24 3.74
3950 6075 2.554032 ACAAGTCACATAGTTGGCAAGC 59.446 45.455 0.00 0.00 42.01 4.01
3951 6076 3.120546 CGACAAGTCACATAGTTGGCAAG 60.121 47.826 0.00 0.00 45.65 4.01
3952 6077 2.805671 CGACAAGTCACATAGTTGGCAA 59.194 45.455 0.00 0.00 45.65 4.52
3953 6078 2.036604 TCGACAAGTCACATAGTTGGCA 59.963 45.455 0.72 0.00 45.65 4.92
3954 6079 2.668457 CTCGACAAGTCACATAGTTGGC 59.332 50.000 0.72 0.00 42.40 4.52
3955 6080 4.174411 TCTCGACAAGTCACATAGTTGG 57.826 45.455 0.72 0.00 42.01 3.77
3956 6081 5.402398 TCATCTCGACAAGTCACATAGTTG 58.598 41.667 0.72 0.00 43.15 3.16
3957 6082 5.644977 TCATCTCGACAAGTCACATAGTT 57.355 39.130 0.72 0.00 0.00 2.24
3958 6083 5.358160 TGATCATCTCGACAAGTCACATAGT 59.642 40.000 0.00 0.00 0.00 2.12
3959 6084 5.685068 GTGATCATCTCGACAAGTCACATAG 59.315 44.000 0.00 0.00 35.72 2.23
3960 6085 5.582550 GTGATCATCTCGACAAGTCACATA 58.417 41.667 0.00 0.00 35.72 2.29
3961 6086 4.428209 GTGATCATCTCGACAAGTCACAT 58.572 43.478 0.00 0.00 35.72 3.21
3962 6087 3.670627 CGTGATCATCTCGACAAGTCACA 60.671 47.826 2.87 0.00 35.64 3.58
3963 6088 2.848887 CGTGATCATCTCGACAAGTCAC 59.151 50.000 2.87 0.00 35.64 3.67
3964 6089 2.732282 GCGTGATCATCTCGACAAGTCA 60.732 50.000 13.22 0.00 35.64 3.41
3965 6090 1.849219 GCGTGATCATCTCGACAAGTC 59.151 52.381 13.22 0.00 35.64 3.01
3966 6091 1.202348 TGCGTGATCATCTCGACAAGT 59.798 47.619 13.22 0.00 35.64 3.16
3967 6092 1.851053 CTGCGTGATCATCTCGACAAG 59.149 52.381 13.22 3.41 35.64 3.16
3968 6093 1.913317 CTGCGTGATCATCTCGACAA 58.087 50.000 13.22 0.00 35.64 3.18
3969 6094 0.526310 GCTGCGTGATCATCTCGACA 60.526 55.000 13.22 9.12 35.64 4.35
3970 6095 0.248825 AGCTGCGTGATCATCTCGAC 60.249 55.000 13.22 5.17 35.64 4.20
3971 6096 0.029967 GAGCTGCGTGATCATCTCGA 59.970 55.000 13.22 0.00 35.64 4.04
3972 6097 0.248784 TGAGCTGCGTGATCATCTCG 60.249 55.000 4.71 4.71 36.01 4.04
3973 6098 3.656066 TGAGCTGCGTGATCATCTC 57.344 52.632 0.00 2.22 36.01 2.75
3977 6102 2.320745 ATGAATGAGCTGCGTGATCA 57.679 45.000 0.00 0.00 45.73 2.92
3988 6113 7.275341 GCGATATGGAGAAGTTCTATGAATGAG 59.725 40.741 5.09 0.00 0.00 2.90
4018 6143 2.947652 ACCATGTCTGATATTGCACTGC 59.052 45.455 0.00 0.00 0.00 4.40
4065 6190 0.247460 CAGCCCATCTCGACAAGTCA 59.753 55.000 0.72 0.00 0.00 3.41
4522 6670 2.584791 CACTCCAATTTTTCTTCGGCG 58.415 47.619 0.00 0.00 0.00 6.46
4540 6688 3.313526 CCATGTGGATAGCTACAAAGCAC 59.686 47.826 0.00 0.00 44.44 4.40
4637 6790 4.713553 TCAAAGTCATGCAAGAAGTACCA 58.286 39.130 0.00 0.00 0.00 3.25
4657 6813 4.219725 TGGTCACGTTCTAGTTCATCATCA 59.780 41.667 0.00 0.00 0.00 3.07
4685 6841 1.067071 GGGAACAACTCTCGAACGGAT 60.067 52.381 0.00 0.00 0.00 4.18
4743 6902 2.158943 AGTCGCTTATTACTTCCAGGGC 60.159 50.000 0.00 0.00 0.00 5.19
4758 6917 0.947244 CCTGTTTGCTTTGAGTCGCT 59.053 50.000 0.00 0.00 0.00 4.93
4760 6919 1.264288 GTCCCTGTTTGCTTTGAGTCG 59.736 52.381 0.00 0.00 0.00 4.18
4761 6920 2.576615 AGTCCCTGTTTGCTTTGAGTC 58.423 47.619 0.00 0.00 0.00 3.36
4770 6929 1.035139 AGCTGCAAAGTCCCTGTTTG 58.965 50.000 1.02 0.00 37.85 2.93
4820 6979 6.434028 CCATCATTAGGTTCCTCAAAGAACAA 59.566 38.462 6.73 0.00 46.52 2.83
4821 6980 5.945784 CCATCATTAGGTTCCTCAAAGAACA 59.054 40.000 6.73 0.00 46.52 3.18
4829 6988 4.455606 CAACTCCCATCATTAGGTTCCTC 58.544 47.826 0.00 0.00 0.00 3.71
4834 6993 3.189606 TGACCAACTCCCATCATTAGGT 58.810 45.455 0.00 0.00 0.00 3.08
5149 7308 1.202521 TGGATCGGTCGTCCAATCATG 60.203 52.381 2.07 0.00 42.56 3.07
5367 7547 0.329596 GAGACCAACCCAATGGCTCT 59.670 55.000 0.00 5.01 44.75 4.09
5446 7628 5.010112 AGGTTCGATACATGGTCACATAGAG 59.990 44.000 0.00 0.00 34.99 2.43
5527 7715 4.766375 TCCGAATGAAAGATACAAGGTCC 58.234 43.478 0.00 0.00 0.00 4.46
5542 7730 8.338259 CCTTAAGTTATCACAAGATTCCGAATG 58.662 37.037 0.00 0.00 35.67 2.67
5543 7731 7.499232 CCCTTAAGTTATCACAAGATTCCGAAT 59.501 37.037 0.97 0.00 35.67 3.34
5544 7732 6.821665 CCCTTAAGTTATCACAAGATTCCGAA 59.178 38.462 0.97 0.00 35.67 4.30
5738 7927 1.078214 TGGAGAGCCGAGCCATTTG 60.078 57.895 0.00 0.00 36.79 2.32
5775 7964 1.218047 GTGTGTGAGCTATCCGGCA 59.782 57.895 0.00 0.00 34.17 5.69
6074 8263 3.708403 TGAGAACAGCCATCATGAAGT 57.292 42.857 0.00 0.00 0.00 3.01
6096 8285 0.395862 TTCCTCCTGGCGGTAGAGAG 60.396 60.000 2.05 0.00 0.00 3.20
6097 8286 0.395862 CTTCCTCCTGGCGGTAGAGA 60.396 60.000 3.45 0.00 0.00 3.10
6185 8374 7.903995 AAAGCTTTGTGAATTGTCTCAAAAA 57.096 28.000 11.80 0.00 43.19 1.94
6186 8375 9.598517 AATAAAGCTTTGTGAATTGTCTCAAAA 57.401 25.926 22.02 0.00 43.19 2.44
6189 8378 9.844790 CATAATAAAGCTTTGTGAATTGTCTCA 57.155 29.630 22.02 0.00 0.00 3.27
6190 8379 9.846248 ACATAATAAAGCTTTGTGAATTGTCTC 57.154 29.630 22.02 0.00 0.00 3.36
6191 8380 9.846248 GACATAATAAAGCTTTGTGAATTGTCT 57.154 29.630 22.02 0.00 0.00 3.41
6192 8381 8.788813 CGACATAATAAAGCTTTGTGAATTGTC 58.211 33.333 22.02 20.87 0.00 3.18
6193 8382 8.296713 ACGACATAATAAAGCTTTGTGAATTGT 58.703 29.630 22.02 15.72 0.00 2.71
6194 8383 8.673626 ACGACATAATAAAGCTTTGTGAATTG 57.326 30.769 22.02 12.97 0.00 2.32
6195 8384 8.511321 TGACGACATAATAAAGCTTTGTGAATT 58.489 29.630 22.02 14.79 0.00 2.17
6196 8385 8.039603 TGACGACATAATAAAGCTTTGTGAAT 57.960 30.769 22.02 9.68 0.00 2.57
6197 8386 7.428282 TGACGACATAATAAAGCTTTGTGAA 57.572 32.000 22.02 7.75 0.00 3.18
6198 8387 7.333174 TGATGACGACATAATAAAGCTTTGTGA 59.667 33.333 22.02 8.83 36.82 3.58
6199 8388 7.463544 TGATGACGACATAATAAAGCTTTGTG 58.536 34.615 22.02 15.76 36.82 3.33
6200 8389 7.334421 ACTGATGACGACATAATAAAGCTTTGT 59.666 33.333 22.02 12.64 36.82 2.83
6201 8390 7.688372 ACTGATGACGACATAATAAAGCTTTG 58.312 34.615 22.02 7.76 36.82 2.77
6202 8391 7.849804 ACTGATGACGACATAATAAAGCTTT 57.150 32.000 17.30 17.30 36.82 3.51
6203 8392 7.549134 TCAACTGATGACGACATAATAAAGCTT 59.451 33.333 0.00 0.00 36.82 3.74
6204 8393 7.041721 TCAACTGATGACGACATAATAAAGCT 58.958 34.615 0.00 0.00 36.82 3.74
6205 8394 7.234187 TCAACTGATGACGACATAATAAAGC 57.766 36.000 0.00 0.00 36.82 3.51
6206 8395 8.116753 GGTTCAACTGATGACGACATAATAAAG 58.883 37.037 0.00 0.00 37.92 1.85
6207 8396 7.201487 CGGTTCAACTGATGACGACATAATAAA 60.201 37.037 0.00 0.00 37.92 1.40
6208 8397 6.254804 CGGTTCAACTGATGACGACATAATAA 59.745 38.462 0.00 0.00 37.92 1.40
6209 8398 5.746721 CGGTTCAACTGATGACGACATAATA 59.253 40.000 0.00 0.00 37.92 0.98
6210 8399 4.566759 CGGTTCAACTGATGACGACATAAT 59.433 41.667 0.00 0.00 37.92 1.28
6211 8400 3.924073 CGGTTCAACTGATGACGACATAA 59.076 43.478 0.00 0.00 37.92 1.90
6212 8401 3.507786 CGGTTCAACTGATGACGACATA 58.492 45.455 0.00 0.00 37.92 2.29
6213 8402 2.337583 CGGTTCAACTGATGACGACAT 58.662 47.619 0.00 0.00 37.92 3.06
6214 8403 1.604438 CCGGTTCAACTGATGACGACA 60.604 52.381 0.00 0.00 37.92 4.35
6215 8404 1.068474 CCGGTTCAACTGATGACGAC 58.932 55.000 0.00 0.00 37.92 4.34
6216 8405 0.037697 CCCGGTTCAACTGATGACGA 60.038 55.000 0.00 0.00 37.92 4.20
6217 8406 0.037697 TCCCGGTTCAACTGATGACG 60.038 55.000 0.00 0.00 37.92 4.35
6218 8407 1.439679 GTCCCGGTTCAACTGATGAC 58.560 55.000 0.00 0.65 37.92 3.06
6219 8408 0.037697 CGTCCCGGTTCAACTGATGA 60.038 55.000 0.00 0.00 35.85 2.92
6220 8409 0.037697 TCGTCCCGGTTCAACTGATG 60.038 55.000 0.00 0.00 0.00 3.07
6221 8410 0.682852 TTCGTCCCGGTTCAACTGAT 59.317 50.000 0.00 0.00 0.00 2.90
6222 8411 0.464870 TTTCGTCCCGGTTCAACTGA 59.535 50.000 0.00 0.00 0.00 3.41
6223 8412 0.865769 CTTTCGTCCCGGTTCAACTG 59.134 55.000 0.00 0.00 0.00 3.16
6224 8413 0.754472 TCTTTCGTCCCGGTTCAACT 59.246 50.000 0.00 0.00 0.00 3.16
6225 8414 1.145803 CTCTTTCGTCCCGGTTCAAC 58.854 55.000 0.00 0.00 0.00 3.18
6226 8415 1.000506 CTCTCTTTCGTCCCGGTTCAA 59.999 52.381 0.00 0.00 0.00 2.69
6227 8416 0.601558 CTCTCTTTCGTCCCGGTTCA 59.398 55.000 0.00 0.00 0.00 3.18
6228 8417 0.108756 CCTCTCTTTCGTCCCGGTTC 60.109 60.000 0.00 0.00 0.00 3.62
6229 8418 0.830866 ACCTCTCTTTCGTCCCGGTT 60.831 55.000 0.00 0.00 0.00 4.44
6230 8419 0.830866 AACCTCTCTTTCGTCCCGGT 60.831 55.000 0.00 0.00 0.00 5.28
6231 8420 0.320697 AAACCTCTCTTTCGTCCCGG 59.679 55.000 0.00 0.00 0.00 5.73
6232 8421 1.672145 GGAAACCTCTCTTTCGTCCCG 60.672 57.143 0.00 0.00 31.81 5.14
6233 8422 1.672145 CGGAAACCTCTCTTTCGTCCC 60.672 57.143 0.00 0.00 31.81 4.46
6234 8423 1.672145 CCGGAAACCTCTCTTTCGTCC 60.672 57.143 0.00 0.00 31.81 4.79
6235 8424 1.672145 CCCGGAAACCTCTCTTTCGTC 60.672 57.143 0.73 0.00 31.81 4.20
6236 8425 0.320697 CCCGGAAACCTCTCTTTCGT 59.679 55.000 0.73 0.00 31.81 3.85
6237 8426 0.391263 CCCCGGAAACCTCTCTTTCG 60.391 60.000 0.73 0.00 31.81 3.46
6238 8427 0.691332 ACCCCGGAAACCTCTCTTTC 59.309 55.000 0.73 0.00 0.00 2.62
6239 8428 0.400594 CACCCCGGAAACCTCTCTTT 59.599 55.000 0.73 0.00 0.00 2.52
6240 8429 0.473117 TCACCCCGGAAACCTCTCTT 60.473 55.000 0.73 0.00 0.00 2.85
6241 8430 1.157751 TCACCCCGGAAACCTCTCT 59.842 57.895 0.73 0.00 0.00 3.10
6242 8431 1.295746 GTCACCCCGGAAACCTCTC 59.704 63.158 0.73 0.00 0.00 3.20
6243 8432 2.222013 GGTCACCCCGGAAACCTCT 61.222 63.158 0.73 0.00 0.00 3.69
6244 8433 0.906282 TAGGTCACCCCGGAAACCTC 60.906 60.000 16.93 0.00 41.20 3.85
6245 8434 0.474273 TTAGGTCACCCCGGAAACCT 60.474 55.000 17.39 17.39 44.24 3.50
6246 8435 0.321919 GTTAGGTCACCCCGGAAACC 60.322 60.000 0.73 4.56 38.74 3.27
6247 8436 0.321919 GGTTAGGTCACCCCGGAAAC 60.322 60.000 0.73 0.00 38.74 2.78
6248 8437 0.767446 TGGTTAGGTCACCCCGGAAA 60.767 55.000 0.73 0.00 38.74 3.13
6249 8438 1.152074 TGGTTAGGTCACCCCGGAA 60.152 57.895 0.73 0.00 38.74 4.30
6250 8439 1.914764 GTGGTTAGGTCACCCCGGA 60.915 63.158 0.73 0.00 38.74 5.14
6251 8440 2.218454 TGTGGTTAGGTCACCCCGG 61.218 63.158 0.00 0.00 38.74 5.73
6252 8441 1.004200 GTGTGGTTAGGTCACCCCG 60.004 63.158 0.00 0.00 38.74 5.73
6253 8442 0.250597 GTGTGTGGTTAGGTCACCCC 60.251 60.000 0.00 0.00 35.73 4.95
6254 8443 0.601841 CGTGTGTGGTTAGGTCACCC 60.602 60.000 0.00 0.00 35.73 4.61
6255 8444 0.601841 CCGTGTGTGGTTAGGTCACC 60.602 60.000 0.00 0.00 37.34 4.02
6256 8445 1.226030 GCCGTGTGTGGTTAGGTCAC 61.226 60.000 0.00 0.00 35.82 3.67
6257 8446 1.070105 GCCGTGTGTGGTTAGGTCA 59.930 57.895 0.00 0.00 0.00 4.02
6258 8447 2.025418 CGCCGTGTGTGGTTAGGTC 61.025 63.158 0.00 0.00 0.00 3.85
6259 8448 2.029964 CGCCGTGTGTGGTTAGGT 59.970 61.111 0.00 0.00 0.00 3.08
6260 8449 2.740826 CCGCCGTGTGTGGTTAGG 60.741 66.667 0.00 0.00 39.95 2.69
6261 8450 3.419759 GCCGCCGTGTGTGGTTAG 61.420 66.667 0.00 0.00 46.96 2.34
6262 8451 3.931247 AGCCGCCGTGTGTGGTTA 61.931 61.111 0.00 0.00 46.96 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.