Multiple sequence alignment - TraesCS2D01G479400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G479400 chr2D 100.000 4703 0 0 1 4703 580191102 580195804 0.000000e+00 8685.0
1 TraesCS2D01G479400 chr2D 80.045 446 69 9 3597 4036 580224631 580225062 3.530000e-81 313.0
2 TraesCS2D01G479400 chr2B 94.086 4075 207 18 1 4065 699106754 699110804 0.000000e+00 6159.0
3 TraesCS2D01G479400 chr2A 95.536 1949 74 7 2121 4065 718119194 718121133 0.000000e+00 3105.0
4 TraesCS2D01G479400 chr2A 98.338 722 9 1 890 1608 718117702 718118423 0.000000e+00 1264.0
5 TraesCS2D01G479400 chr2A 86.444 509 61 3 4114 4619 718121237 718121740 6.880000e-153 551.0
6 TraesCS2D01G479400 chr2A 94.222 225 10 3 1 225 718117154 718117375 1.620000e-89 340.0
7 TraesCS2D01G479400 chr4B 84.150 2940 419 23 953 3852 95069175 95072107 0.000000e+00 2804.0
8 TraesCS2D01G479400 chr4B 83.130 2786 434 14 998 3751 94791598 94788817 0.000000e+00 2508.0
9 TraesCS2D01G479400 chr4B 78.032 437 72 11 330 754 95068506 95068930 2.170000e-63 254.0
10 TraesCS2D01G479400 chr4B 94.444 54 1 2 224 276 20277567 20277515 1.080000e-11 82.4
11 TraesCS2D01G479400 chr4A 82.555 3256 488 45 532 3737 531387102 531383877 0.000000e+00 2793.0
12 TraesCS2D01G479400 chr4A 83.702 2939 434 21 953 3852 531680599 531677667 0.000000e+00 2732.0
13 TraesCS2D01G479400 chr4A 81.934 2347 360 29 1478 3800 532215676 532217982 0.000000e+00 1927.0
14 TraesCS2D01G479400 chr4A 77.004 948 161 28 998 1914 626302344 626301423 1.520000e-134 490.0
15 TraesCS2D01G479400 chr4A 75.806 434 75 17 333 754 531681262 531680847 4.800000e-45 193.0
16 TraesCS2D01G479400 chr4A 94.444 54 1 2 224 276 592547779 592547831 1.080000e-11 82.4
17 TraesCS2D01G479400 chr4A 94.444 54 1 2 224 276 592834149 592834201 1.080000e-11 82.4
18 TraesCS2D01G479400 chr4D 83.974 2939 426 21 953 3852 64537941 64540873 0.000000e+00 2776.0
19 TraesCS2D01G479400 chr4D 82.257 1471 242 13 1013 2476 64356167 64354709 0.000000e+00 1253.0
20 TraesCS2D01G479400 chr4D 80.503 1431 215 25 2472 3865 64349333 64347930 0.000000e+00 1038.0
21 TraesCS2D01G479400 chr4D 75.661 567 105 21 330 884 64537233 64537778 7.810000e-63 252.0
22 TraesCS2D01G479400 chrUn 90.942 828 67 5 369 1191 77012756 77013580 0.000000e+00 1107.0
23 TraesCS2D01G479400 chrUn 90.821 828 68 5 369 1191 76993128 76993952 0.000000e+00 1101.0
24 TraesCS2D01G479400 chrUn 90.738 799 66 5 396 1189 396331612 396330817 0.000000e+00 1059.0
25 TraesCS2D01G479400 chrUn 91.566 581 45 3 613 1191 360279780 360280358 0.000000e+00 798.0
26 TraesCS2D01G479400 chrUn 94.444 54 1 2 224 276 308089936 308089988 1.080000e-11 82.4
27 TraesCS2D01G479400 chr6B 91.566 581 45 3 613 1191 76423316 76423894 0.000000e+00 798.0
28 TraesCS2D01G479400 chr6B 92.593 54 2 2 226 278 203685566 203685514 5.050000e-10 76.8
29 TraesCS2D01G479400 chr3D 94.444 54 2 1 223 276 567408755 567408807 1.080000e-11 82.4
30 TraesCS2D01G479400 chr1B 96.078 51 1 1 229 279 3949886 3949837 1.080000e-11 82.4
31 TraesCS2D01G479400 chr3A 91.228 57 4 1 223 278 621664492 621664436 5.050000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G479400 chr2D 580191102 580195804 4702 False 8685.0 8685 100.0000 1 4703 1 chr2D.!!$F1 4702
1 TraesCS2D01G479400 chr2B 699106754 699110804 4050 False 6159.0 6159 94.0860 1 4065 1 chr2B.!!$F1 4064
2 TraesCS2D01G479400 chr2A 718117154 718121740 4586 False 1315.0 3105 93.6350 1 4619 4 chr2A.!!$F1 4618
3 TraesCS2D01G479400 chr4B 94788817 94791598 2781 True 2508.0 2508 83.1300 998 3751 1 chr4B.!!$R2 2753
4 TraesCS2D01G479400 chr4B 95068506 95072107 3601 False 1529.0 2804 81.0910 330 3852 2 chr4B.!!$F1 3522
5 TraesCS2D01G479400 chr4A 531383877 531387102 3225 True 2793.0 2793 82.5550 532 3737 1 chr4A.!!$R1 3205
6 TraesCS2D01G479400 chr4A 532215676 532217982 2306 False 1927.0 1927 81.9340 1478 3800 1 chr4A.!!$F1 2322
7 TraesCS2D01G479400 chr4A 531677667 531681262 3595 True 1462.5 2732 79.7540 333 3852 2 chr4A.!!$R3 3519
8 TraesCS2D01G479400 chr4A 626301423 626302344 921 True 490.0 490 77.0040 998 1914 1 chr4A.!!$R2 916
9 TraesCS2D01G479400 chr4D 64537233 64540873 3640 False 1514.0 2776 79.8175 330 3852 2 chr4D.!!$F1 3522
10 TraesCS2D01G479400 chr4D 64354709 64356167 1458 True 1253.0 1253 82.2570 1013 2476 1 chr4D.!!$R2 1463
11 TraesCS2D01G479400 chr4D 64347930 64349333 1403 True 1038.0 1038 80.5030 2472 3865 1 chr4D.!!$R1 1393
12 TraesCS2D01G479400 chrUn 77012756 77013580 824 False 1107.0 1107 90.9420 369 1191 1 chrUn.!!$F2 822
13 TraesCS2D01G479400 chrUn 76993128 76993952 824 False 1101.0 1101 90.8210 369 1191 1 chrUn.!!$F1 822
14 TraesCS2D01G479400 chrUn 396330817 396331612 795 True 1059.0 1059 90.7380 396 1189 1 chrUn.!!$R1 793
15 TraesCS2D01G479400 chrUn 360279780 360280358 578 False 798.0 798 91.5660 613 1191 1 chrUn.!!$F4 578
16 TraesCS2D01G479400 chr6B 76423316 76423894 578 False 798.0 798 91.5660 613 1191 1 chr6B.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 731 0.534203 TTCTGCCGGGTGAAGTTCAC 60.534 55.000 25.0 25.0 46.23 3.18 F
1859 2483 0.108207 CTGGATGATGTCTGGGAGCC 59.892 60.000 0.0 0.0 0.00 4.70 F
2064 2690 1.070445 CACATGCCCCGAGGATCTC 59.930 63.158 0.0 0.0 33.47 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2662 0.034186 GGGGCATGTGTGATCCTTCA 60.034 55.0 0.00 0.00 0.00 3.02 R
3473 4140 1.100510 ACTGACATCATGCATGCACC 58.899 50.0 25.37 10.86 35.65 5.01 R
4059 4735 0.522915 GCGAGCTGCTCAAATCTTGC 60.523 55.0 27.46 17.14 41.73 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.271776 TCTTATGCTGCAGAATTGATCACG 59.728 41.667 20.43 0.00 0.00 4.35
168 169 1.129811 GTGAAACCGCCGGTATCAAAG 59.870 52.381 10.30 0.00 33.12 2.77
216 218 4.576053 TGTGCCATGTAGTCTATCAAATGC 59.424 41.667 0.00 0.00 0.00 3.56
268 271 4.762289 ATTAATATGGATCGGAGGGAGC 57.238 45.455 0.00 0.00 0.00 4.70
290 293 0.889186 ATAAATTAGCAGCCCGCCGG 60.889 55.000 0.00 0.00 44.04 6.13
313 316 7.310664 CGGTTCATTTACTAGACTAGTTGTGA 58.689 38.462 19.99 16.93 40.14 3.58
349 352 3.113260 AGAGTTTTGCGCTCAACTAGT 57.887 42.857 20.38 11.09 33.22 2.57
422 437 2.485814 AGCTTCCTGCAACGAAAATCTC 59.514 45.455 0.00 0.00 45.94 2.75
433 448 4.722361 ACGAAAATCTCTCTGTAGTCCC 57.278 45.455 0.00 0.00 0.00 4.46
450 465 1.974957 TCCCGATGACAGTCAAAAGGA 59.025 47.619 18.63 15.70 0.00 3.36
466 481 7.134815 GTCAAAAGGAATGACAATCGGATATG 58.865 38.462 2.01 0.00 45.13 1.78
585 604 3.190744 GGTGCTTCTACCTTAGTTTTGGC 59.809 47.826 0.00 0.00 37.74 4.52
624 644 4.704540 TGACTGAACCTTTGTTTGTGATGT 59.295 37.500 0.00 0.00 33.97 3.06
627 647 6.560711 ACTGAACCTTTGTTTGTGATGTAAC 58.439 36.000 0.00 0.00 33.97 2.50
639 659 8.289618 TGTTTGTGATGTAACTTATCTCTTTGC 58.710 33.333 0.00 0.00 0.00 3.68
648 668 7.552687 TGTAACTTATCTCTTTGCTTGGGTATG 59.447 37.037 0.00 0.00 0.00 2.39
678 698 4.487714 AGAATACGAGCCAAAATCCTCA 57.512 40.909 0.00 0.00 0.00 3.86
711 731 0.534203 TTCTGCCGGGTGAAGTTCAC 60.534 55.000 25.00 25.00 46.23 3.18
755 775 5.939764 AGTGCTGTTAACTCTGATCCATA 57.060 39.130 7.22 0.00 0.00 2.74
776 797 4.453480 AGGGAGATTTCAGTGGACAAAA 57.547 40.909 0.00 0.00 0.00 2.44
786 809 5.576563 TCAGTGGACAAAAAGGGATTCTA 57.423 39.130 0.00 0.00 0.00 2.10
822 853 6.753913 ACCTGGTATCTTCACACATGATAT 57.246 37.500 0.00 0.00 33.85 1.63
911 974 3.975982 GGGCCAAGGGGTATAAACTACTA 59.024 47.826 4.39 0.00 36.17 1.82
941 1013 4.875544 TGCATGAGCTAATTCGGTTAAC 57.124 40.909 0.00 0.00 42.74 2.01
1324 1471 7.214467 AGTCGCCTGAAGAAAATATTGAAAA 57.786 32.000 0.00 0.00 0.00 2.29
1325 1472 7.830739 AGTCGCCTGAAGAAAATATTGAAAAT 58.169 30.769 0.00 0.00 0.00 1.82
1620 1786 1.614850 GGCGGGTTGGGAAAATCTACA 60.615 52.381 0.00 0.00 0.00 2.74
1644 2224 7.170658 ACATTGGTTTCAAATGTTTATGAACGG 59.829 33.333 0.00 0.00 36.15 4.44
1789 2413 7.255555 GCATGGACAAAATGGACATATATGACA 60.256 37.037 19.63 16.42 0.00 3.58
1859 2483 0.108207 CTGGATGATGTCTGGGAGCC 59.892 60.000 0.00 0.00 0.00 4.70
1880 2506 7.010339 AGCCAGAGGTATACTTCCAAATATC 57.990 40.000 11.13 0.00 0.00 1.63
1892 2518 5.595952 ACTTCCAAATATCTGATGCTTTCCC 59.404 40.000 0.00 0.00 0.00 3.97
1959 2585 2.813754 TGTTGCAGGAATTTCTTCTCCG 59.186 45.455 0.00 0.00 36.78 4.63
2021 2647 7.607607 TGATGCATTTAAGCTCTTCTGTAGAAA 59.392 33.333 0.00 0.00 32.50 2.52
2036 2662 5.827797 TCTGTAGAAAGGCTTTTCACAACAT 59.172 36.000 21.73 4.19 44.14 2.71
2064 2690 1.070445 CACATGCCCCGAGGATCTC 59.930 63.158 0.00 0.00 33.47 2.75
3138 3799 4.475944 CAAATCTGTTTGCTACCCTTTCG 58.524 43.478 0.00 0.00 38.39 3.46
3473 4140 7.878127 TCCAAACCTGAAGACACTTATCTTAAG 59.122 37.037 0.00 0.00 39.08 1.85
3512 4179 3.834813 AGTGAGCTAAACATCAGTGAGGA 59.165 43.478 12.53 0.00 0.00 3.71
3642 4309 0.874390 TGCACACGGATTTCAGAAGC 59.126 50.000 0.00 0.00 0.00 3.86
3715 4383 1.205655 GTGTCTAGATGCAGCAGGTCA 59.794 52.381 4.07 0.00 0.00 4.02
3835 4506 0.109319 CAGCATTTGCCGGTGGTTAC 60.109 55.000 1.90 0.00 43.38 2.50
3880 4556 2.325583 TGGTATCGATTGCCTTCCAC 57.674 50.000 1.71 0.00 0.00 4.02
3887 4563 1.002134 ATTGCCTTCCACAGGTCCG 60.002 57.895 0.00 0.00 46.07 4.79
3901 4577 3.199071 ACAGGTCCGCATCTGGTTTTATA 59.801 43.478 0.00 0.00 35.47 0.98
3908 4584 7.352739 GTCCGCATCTGGTTTTATATTGTTAG 58.647 38.462 0.00 0.00 0.00 2.34
3909 4585 7.012044 GTCCGCATCTGGTTTTATATTGTTAGT 59.988 37.037 0.00 0.00 0.00 2.24
3910 4586 7.225931 TCCGCATCTGGTTTTATATTGTTAGTC 59.774 37.037 0.00 0.00 0.00 2.59
3911 4587 7.011950 CCGCATCTGGTTTTATATTGTTAGTCA 59.988 37.037 0.00 0.00 0.00 3.41
3912 4588 8.559536 CGCATCTGGTTTTATATTGTTAGTCAT 58.440 33.333 0.00 0.00 0.00 3.06
3925 4601 4.641396 TGTTAGTCATATATGCCACTGCC 58.359 43.478 14.40 7.43 36.33 4.85
3998 4674 9.695526 TCTGTGAATAATCCTTTCAAACATTTG 57.304 29.630 0.00 0.00 35.03 2.32
4038 4714 7.800380 GGATATATTTTGATCTTTGTCGCTGTG 59.200 37.037 0.00 0.00 0.00 3.66
4041 4717 1.511850 TGATCTTTGTCGCTGTGTGG 58.488 50.000 0.00 0.00 0.00 4.17
4046 4722 4.624364 TGTCGCTGTGTGGCCCTG 62.624 66.667 0.00 0.00 0.00 4.45
4059 4735 1.211212 TGGCCCTGTGATCTGATTCAG 59.789 52.381 7.38 7.38 0.00 3.02
4065 4741 4.452825 CCTGTGATCTGATTCAGCAAGAT 58.547 43.478 8.89 0.00 0.00 2.40
4066 4742 4.882427 CCTGTGATCTGATTCAGCAAGATT 59.118 41.667 8.89 0.00 0.00 2.40
4068 4744 6.190954 TGTGATCTGATTCAGCAAGATTTG 57.809 37.500 8.89 0.00 0.00 2.32
4076 4767 2.082231 TCAGCAAGATTTGAGCAGCTC 58.918 47.619 16.21 16.21 0.00 4.09
4077 4768 1.085091 AGCAAGATTTGAGCAGCTCG 58.915 50.000 17.81 2.47 32.35 5.03
4078 4769 0.522915 GCAAGATTTGAGCAGCTCGC 60.523 55.000 17.81 9.02 42.91 5.03
4107 4798 3.057526 GTGTGTTTTCCTGATTAGGTGCC 60.058 47.826 3.04 0.00 44.88 5.01
4108 4799 3.181434 TGTGTTTTCCTGATTAGGTGCCT 60.181 43.478 3.04 0.00 44.88 4.75
4109 4800 3.440522 GTGTTTTCCTGATTAGGTGCCTC 59.559 47.826 3.04 0.00 44.88 4.70
4110 4801 3.330701 TGTTTTCCTGATTAGGTGCCTCT 59.669 43.478 3.04 0.00 44.88 3.69
4131 4862 0.317160 TAGCACCTGTGTGTCTTCCG 59.683 55.000 0.00 0.00 44.65 4.30
4133 4864 1.227527 CACCTGTGTGTCTTCCGCA 60.228 57.895 0.00 0.00 37.72 5.69
4150 4881 0.039618 GCAGGAATTTGGGTCCTCCA 59.960 55.000 0.00 0.00 44.00 3.86
4169 4900 4.480115 TCCAGTTTGAAGGAGACAGAGTA 58.520 43.478 0.00 0.00 0.00 2.59
4172 4903 5.465935 CAGTTTGAAGGAGACAGAGTAGTC 58.534 45.833 0.00 0.00 38.81 2.59
4201 4932 8.812513 TTTTGGTTCATCTTGATATGATGTCT 57.187 30.769 0.00 0.00 41.30 3.41
4219 4950 4.026744 TGTCTGATACTCTTGGGAGAAGG 58.973 47.826 0.00 0.00 41.86 3.46
4222 4953 4.959210 TCTGATACTCTTGGGAGAAGGAAG 59.041 45.833 0.00 0.00 41.86 3.46
4229 4960 2.568623 TGGGAGAAGGAAGACAAAGC 57.431 50.000 0.00 0.00 0.00 3.51
4230 4961 1.774254 TGGGAGAAGGAAGACAAAGCA 59.226 47.619 0.00 0.00 0.00 3.91
4231 4962 2.155279 GGGAGAAGGAAGACAAAGCAC 58.845 52.381 0.00 0.00 0.00 4.40
4237 4971 1.610522 AGGAAGACAAAGCACATGCAC 59.389 47.619 6.64 0.00 45.16 4.57
4270 5004 8.284945 ACATGTGCTCTATGTTCAAAATATGT 57.715 30.769 0.00 0.00 35.32 2.29
4271 5005 9.394767 ACATGTGCTCTATGTTCAAAATATGTA 57.605 29.630 0.00 0.00 35.32 2.29
4277 5011 7.359598 GCTCTATGTTCAAAATATGTAGCGGAG 60.360 40.741 0.00 0.00 0.00 4.63
4292 5026 1.002502 GGAGAACGGTTTCCCTGGG 60.003 63.158 6.33 6.33 31.28 4.45
4296 5030 1.304134 AACGGTTTCCCTGGGCATC 60.304 57.895 8.22 0.00 0.00 3.91
4298 5032 1.750399 CGGTTTCCCTGGGCATCAG 60.750 63.158 8.22 0.00 43.00 2.90
4311 5045 2.486191 GGGCATCAGTACCTCATCTTGG 60.486 54.545 0.00 0.00 0.00 3.61
4313 5047 2.435805 GCATCAGTACCTCATCTTGGGA 59.564 50.000 0.00 0.00 0.00 4.37
4344 5078 5.645056 TGATATCAGGGGAAATTGCAGTA 57.355 39.130 0.00 0.00 0.00 2.74
4345 5079 6.012337 TGATATCAGGGGAAATTGCAGTAA 57.988 37.500 0.00 0.00 0.00 2.24
4346 5080 6.430864 TGATATCAGGGGAAATTGCAGTAAA 58.569 36.000 0.00 0.00 0.00 2.01
4380 5114 1.890573 GCTATGTTGTTTCCTGCCCCA 60.891 52.381 0.00 0.00 0.00 4.96
4396 5130 1.614317 CCCCAGTTAAGTCCCTGCTTG 60.614 57.143 0.00 0.00 0.00 4.01
4398 5132 2.224769 CCCAGTTAAGTCCCTGCTTGAA 60.225 50.000 0.00 0.00 0.00 2.69
4405 5139 1.075482 TCCCTGCTTGAAAGGCCAG 59.925 57.895 5.01 0.00 33.07 4.85
4409 5143 0.964358 CTGCTTGAAAGGCCAGGAGG 60.964 60.000 5.01 0.00 38.23 4.30
4422 5156 3.844090 GGAGGCAGAGCTCGGTCC 61.844 72.222 15.13 15.50 0.00 4.46
4427 5161 1.004440 GCAGAGCTCGGTCCAAGTT 60.004 57.895 15.48 0.00 0.00 2.66
4431 5165 0.603569 GAGCTCGGTCCAAGTTGAGA 59.396 55.000 3.87 0.00 0.00 3.27
4438 5172 3.385433 TCGGTCCAAGTTGAGAAAGTGTA 59.615 43.478 3.87 0.00 0.00 2.90
4442 5176 6.565999 CGGTCCAAGTTGAGAAAGTGTATTTC 60.566 42.308 3.87 0.00 0.00 2.17
4446 5180 6.147164 CCAAGTTGAGAAAGTGTATTTCGCTA 59.853 38.462 3.87 0.00 35.67 4.26
4448 5182 6.220930 AGTTGAGAAAGTGTATTTCGCTACA 58.779 36.000 16.02 0.00 36.82 2.74
4470 5204 7.573968 ACAATATTTTAGAGGATGCAAGGAC 57.426 36.000 0.00 0.00 0.00 3.85
4503 5237 1.533625 TAGCAATGCAACACCTGTCC 58.466 50.000 8.35 0.00 0.00 4.02
4511 5245 1.956477 GCAACACCTGTCCTTTCATGT 59.044 47.619 0.00 0.00 0.00 3.21
4516 5250 3.070018 CACCTGTCCTTTCATGTCAGTC 58.930 50.000 0.00 0.00 0.00 3.51
4519 5253 4.202503 ACCTGTCCTTTCATGTCAGTCATT 60.203 41.667 0.00 0.00 34.09 2.57
4532 5266 3.076621 TCAGTCATTGTGGTCTGCATTC 58.923 45.455 0.00 0.00 0.00 2.67
4551 5285 6.138761 GCATTCGATCATCTTGGTATTGTTC 58.861 40.000 0.00 0.00 0.00 3.18
4560 5294 8.786826 TCATCTTGGTATTGTTCGAGTAAATT 57.213 30.769 0.00 0.00 0.00 1.82
4561 5295 8.664798 TCATCTTGGTATTGTTCGAGTAAATTG 58.335 33.333 0.00 0.00 0.00 2.32
4562 5296 6.837992 TCTTGGTATTGTTCGAGTAAATTGC 58.162 36.000 0.00 0.00 0.00 3.56
4563 5297 5.211266 TGGTATTGTTCGAGTAAATTGCG 57.789 39.130 0.00 0.00 0.00 4.85
4570 5304 0.520412 CGAGTAAATTGCGCGGTTGG 60.520 55.000 8.83 0.00 0.00 3.77
4577 5311 1.388547 ATTGCGCGGTTGGATTACAT 58.611 45.000 8.83 0.00 0.00 2.29
4583 5317 2.418628 CGCGGTTGGATTACATGAAACT 59.581 45.455 0.00 0.00 0.00 2.66
4590 5324 4.724399 TGGATTACATGAAACTGTGTGGT 58.276 39.130 0.00 0.00 0.00 4.16
4614 5348 2.158667 AGTTAGTGGTTGGGGACAGTTG 60.159 50.000 0.00 0.00 44.54 3.16
4619 5353 0.179040 GGTTGGGGACAGTTGTTCGA 60.179 55.000 0.00 0.00 44.54 3.71
4620 5354 1.226746 GTTGGGGACAGTTGTTCGAG 58.773 55.000 0.00 0.00 44.54 4.04
4621 5355 0.534203 TTGGGGACAGTTGTTCGAGC 60.534 55.000 0.00 0.00 44.54 5.03
4622 5356 1.070786 GGGGACAGTTGTTCGAGCA 59.929 57.895 0.00 0.00 0.00 4.26
4623 5357 0.321653 GGGGACAGTTGTTCGAGCAT 60.322 55.000 1.75 0.00 0.00 3.79
4624 5358 1.066430 GGGGACAGTTGTTCGAGCATA 60.066 52.381 1.75 0.00 0.00 3.14
4625 5359 2.000447 GGGACAGTTGTTCGAGCATAC 59.000 52.381 1.75 4.78 0.00 2.39
4626 5360 1.654105 GGACAGTTGTTCGAGCATACG 59.346 52.381 1.75 0.00 0.00 3.06
4627 5361 1.059264 GACAGTTGTTCGAGCATACGC 59.941 52.381 1.75 0.00 38.99 4.42
4628 5362 1.067693 CAGTTGTTCGAGCATACGCA 58.932 50.000 1.75 0.00 42.27 5.24
4629 5363 1.660607 CAGTTGTTCGAGCATACGCAT 59.339 47.619 1.75 0.00 42.27 4.73
4630 5364 1.660607 AGTTGTTCGAGCATACGCATG 59.339 47.619 1.75 0.00 42.27 4.06
4631 5365 1.393539 GTTGTTCGAGCATACGCATGT 59.606 47.619 1.75 0.00 42.27 3.21
4632 5366 0.998669 TGTTCGAGCATACGCATGTG 59.001 50.000 4.30 4.30 42.27 3.21
4633 5367 0.301687 GTTCGAGCATACGCATGTGG 59.698 55.000 11.65 0.00 42.27 4.17
4634 5368 0.174617 TTCGAGCATACGCATGTGGA 59.825 50.000 11.65 1.27 42.27 4.02
4635 5369 0.174617 TCGAGCATACGCATGTGGAA 59.825 50.000 11.65 0.00 42.27 3.53
4636 5370 1.202521 TCGAGCATACGCATGTGGAAT 60.203 47.619 11.65 0.76 42.27 3.01
4637 5371 2.035321 TCGAGCATACGCATGTGGAATA 59.965 45.455 11.65 0.00 42.27 1.75
4638 5372 2.995939 CGAGCATACGCATGTGGAATAT 59.004 45.455 11.65 0.00 42.27 1.28
4639 5373 4.082463 TCGAGCATACGCATGTGGAATATA 60.082 41.667 11.65 0.00 42.27 0.86
4640 5374 4.031765 CGAGCATACGCATGTGGAATATAC 59.968 45.833 11.65 0.00 42.27 1.47
4641 5375 4.893608 AGCATACGCATGTGGAATATACA 58.106 39.130 11.65 0.00 42.27 2.29
4642 5376 5.491070 AGCATACGCATGTGGAATATACAT 58.509 37.500 11.65 0.00 42.27 2.29
4668 5402 9.907229 TGTGGTATATACATGTGGAATTTACAA 57.093 29.630 14.70 0.00 0.00 2.41
4674 5408 9.693739 ATATACATGTGGAATTTACAACTGGAA 57.306 29.630 9.11 0.00 0.00 3.53
4675 5409 6.916360 ACATGTGGAATTTACAACTGGAAT 57.084 33.333 0.00 0.00 0.00 3.01
4676 5410 9.693739 ATACATGTGGAATTTACAACTGGAATA 57.306 29.630 9.11 0.00 0.00 1.75
4677 5411 8.593945 ACATGTGGAATTTACAACTGGAATAT 57.406 30.769 0.00 0.00 0.00 1.28
4678 5412 8.469200 ACATGTGGAATTTACAACTGGAATATG 58.531 33.333 0.00 0.00 0.00 1.78
4679 5413 7.403312 TGTGGAATTTACAACTGGAATATGG 57.597 36.000 0.00 0.00 0.00 2.74
4680 5414 7.178573 TGTGGAATTTACAACTGGAATATGGA 58.821 34.615 0.00 0.00 0.00 3.41
4681 5415 7.838696 TGTGGAATTTACAACTGGAATATGGAT 59.161 33.333 0.00 0.00 0.00 3.41
4682 5416 8.137437 GTGGAATTTACAACTGGAATATGGATG 58.863 37.037 0.00 0.00 0.00 3.51
4683 5417 7.838696 TGGAATTTACAACTGGAATATGGATGT 59.161 33.333 0.00 0.00 0.00 3.06
4684 5418 8.137437 GGAATTTACAACTGGAATATGGATGTG 58.863 37.037 0.00 0.00 0.00 3.21
4685 5419 7.587037 ATTTACAACTGGAATATGGATGTGG 57.413 36.000 0.00 0.00 0.00 4.17
4686 5420 3.290710 ACAACTGGAATATGGATGTGGC 58.709 45.455 0.00 0.00 0.00 5.01
4687 5421 3.289836 CAACTGGAATATGGATGTGGCA 58.710 45.455 0.00 0.00 0.00 4.92
4688 5422 3.889859 ACTGGAATATGGATGTGGCAT 57.110 42.857 0.00 0.00 0.00 4.40
4689 5423 4.999469 ACTGGAATATGGATGTGGCATA 57.001 40.909 0.00 0.00 0.00 3.14
4690 5424 5.525454 ACTGGAATATGGATGTGGCATAT 57.475 39.130 0.00 0.00 0.00 1.78
4691 5425 6.641161 ACTGGAATATGGATGTGGCATATA 57.359 37.500 0.00 0.00 0.00 0.86
4692 5426 6.418101 ACTGGAATATGGATGTGGCATATAC 58.582 40.000 0.00 0.00 0.00 1.47
4693 5427 6.012596 ACTGGAATATGGATGTGGCATATACA 60.013 38.462 11.83 11.83 0.00 2.29
4694 5428 6.972490 TGGAATATGGATGTGGCATATACAT 58.028 36.000 23.18 23.18 41.21 2.29
4695 5429 6.829811 TGGAATATGGATGTGGCATATACATG 59.170 38.462 26.73 0.00 38.78 3.21
4696 5430 6.830324 GGAATATGGATGTGGCATATACATGT 59.170 38.462 26.73 19.70 38.78 3.21
4697 5431 7.340232 GGAATATGGATGTGGCATATACATGTT 59.660 37.037 26.73 25.59 38.78 2.71
4698 5432 5.970317 ATGGATGTGGCATATACATGTTG 57.030 39.130 19.80 0.00 38.78 3.33
4699 5433 4.143543 TGGATGTGGCATATACATGTTGG 58.856 43.478 4.86 0.00 38.78 3.77
4700 5434 4.141298 TGGATGTGGCATATACATGTTGGA 60.141 41.667 4.86 0.00 38.78 3.53
4701 5435 4.826733 GGATGTGGCATATACATGTTGGAA 59.173 41.667 2.30 0.00 38.78 3.53
4702 5436 5.048504 GGATGTGGCATATACATGTTGGAAG 60.049 44.000 2.30 0.00 38.78 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.369091 ATGCCGAATGAACGACCAGC 61.369 55.000 0.00 0.00 35.09 4.85
254 256 0.482887 TATCTGCTCCCTCCGATCCA 59.517 55.000 0.00 0.00 0.00 3.41
268 271 1.537202 GGCGGGCTGCTAATTTATCTG 59.463 52.381 19.30 0.00 45.43 2.90
313 316 3.674528 ACTCTAAGCATGCGCATAGAT 57.325 42.857 24.84 13.52 44.89 1.98
317 320 2.733227 GCAAAACTCTAAGCATGCGCAT 60.733 45.455 19.28 19.28 42.27 4.73
433 448 4.452114 TGTCATTCCTTTTGACTGTCATCG 59.548 41.667 11.86 3.22 43.12 3.84
450 465 4.012374 GGATGGCATATCCGATTGTCATT 58.988 43.478 0.00 0.00 38.24 2.57
466 481 3.118223 AGAAACCTACTAAGCTGGATGGC 60.118 47.826 0.00 0.00 0.00 4.40
545 564 3.063588 GCACCTAGCGTAATCCAAGAAAC 59.936 47.826 0.00 0.00 0.00 2.78
584 603 6.064846 TCAGTCAAAGTCATTCTCTTTTGC 57.935 37.500 0.00 0.00 33.58 3.68
585 604 6.914757 GGTTCAGTCAAAGTCATTCTCTTTTG 59.085 38.462 0.00 0.00 33.58 2.44
624 644 7.630082 ACATACCCAAGCAAAGAGATAAGTTA 58.370 34.615 0.00 0.00 0.00 2.24
627 647 6.352516 AGACATACCCAAGCAAAGAGATAAG 58.647 40.000 0.00 0.00 0.00 1.73
678 698 4.342092 CCCGGCAGAATTTGGAAAAGATAT 59.658 41.667 0.00 0.00 0.00 1.63
711 731 4.957684 AGTAACGGATGGAATTCCTAGG 57.042 45.455 24.73 13.53 36.82 3.02
755 775 4.453480 TTTTGTCCACTGAAATCTCCCT 57.547 40.909 0.00 0.00 0.00 4.20
776 797 5.919348 ATCACCACATCATAGAATCCCTT 57.081 39.130 0.00 0.00 0.00 3.95
786 809 5.158141 AGATACCAGGTATCACCACATCAT 58.842 41.667 32.75 12.80 45.03 2.45
911 974 7.040201 ACCGAATTAGCTCATGCATGAATAAAT 60.040 33.333 28.39 21.35 42.74 1.40
941 1013 7.831753 TGACAGAGTAGAAAAACCATCTAGAG 58.168 38.462 0.00 0.00 30.33 2.43
1279 1423 7.065443 GCGACTTTGTTCCCTATGTTTAAGTAT 59.935 37.037 0.00 0.00 0.00 2.12
1292 1436 0.875059 CTTCAGGCGACTTTGTTCCC 59.125 55.000 0.00 0.00 40.21 3.97
1620 1786 6.648725 CCCGTTCATAAACATTTGAAACCAAT 59.351 34.615 0.00 0.00 33.90 3.16
1644 2224 3.157087 TGCAGGGAACTTGATCTTTTCC 58.843 45.455 10.48 10.48 40.21 3.13
1859 2483 9.650539 CATCAGATATTTGGAAGTATACCTCTG 57.349 37.037 0.00 0.00 0.00 3.35
1880 2506 2.216898 GGAGATTCGGGAAAGCATCAG 58.783 52.381 0.00 0.00 0.00 2.90
1892 2518 1.432270 GCGGCTTCCTTGGAGATTCG 61.432 60.000 0.00 0.00 0.00 3.34
1959 2585 1.079750 GAGCTCAAGGTGACGGGTC 60.080 63.158 9.40 0.00 0.00 4.46
2021 2647 3.565307 TCCTTCATGTTGTGAAAAGCCT 58.435 40.909 0.00 0.00 45.74 4.58
2036 2662 0.034186 GGGGCATGTGTGATCCTTCA 60.034 55.000 0.00 0.00 0.00 3.02
2064 2690 5.403246 ACAATAGAAGTAGCAGTTGTCTCG 58.597 41.667 0.00 0.00 0.00 4.04
2072 2698 7.865707 ACACTTTTCAACAATAGAAGTAGCAG 58.134 34.615 0.00 0.00 0.00 4.24
2321 2957 2.034687 CCCACAGCCTCACAAGGG 59.965 66.667 0.00 0.00 43.58 3.95
3138 3799 5.573337 AGCTTGAAAGAAGTGGCATATTC 57.427 39.130 7.18 7.18 0.00 1.75
3384 4045 6.090898 GCATGTTGTTAAGTCTCAGATACGTT 59.909 38.462 0.00 0.00 0.00 3.99
3473 4140 1.100510 ACTGACATCATGCATGCACC 58.899 50.000 25.37 10.86 35.65 5.01
3629 4296 1.406539 CCCATTGGCTTCTGAAATCCG 59.593 52.381 0.00 0.00 0.00 4.18
3642 4309 2.483014 TTCCGTTAGTGTCCCATTGG 57.517 50.000 0.00 0.00 0.00 3.16
3715 4383 4.718961 AGACAAACATTGCAGGTAGAACT 58.281 39.130 0.00 0.00 0.00 3.01
3767 4435 8.674263 TTTACTGGAACGATTAAAAGTACCAA 57.326 30.769 0.00 0.00 0.00 3.67
3865 4541 3.483954 CCTGTGGAAGGCAATCGAT 57.516 52.632 0.00 0.00 39.93 3.59
3880 4556 2.107950 TAAAACCAGATGCGGACCTG 57.892 50.000 0.00 0.00 0.00 4.00
3901 4577 5.707298 GGCAGTGGCATATATGACTAACAAT 59.293 40.000 19.35 4.89 43.71 2.71
3908 4584 3.131709 ACTGGCAGTGGCATATATGAC 57.868 47.619 21.37 14.60 43.71 3.06
3909 4585 3.903714 AGTACTGGCAGTGGCATATATGA 59.096 43.478 29.65 2.61 43.71 2.15
3910 4586 3.999001 CAGTACTGGCAGTGGCATATATG 59.001 47.826 29.65 12.86 43.71 1.78
3911 4587 3.903714 TCAGTACTGGCAGTGGCATATAT 59.096 43.478 29.65 8.78 43.71 0.86
3912 4588 3.304829 TCAGTACTGGCAGTGGCATATA 58.695 45.455 29.65 12.75 43.71 0.86
3918 4594 3.057969 TGAAATCAGTACTGGCAGTGG 57.942 47.619 29.65 18.16 0.00 4.00
3919 4595 4.005650 ACATGAAATCAGTACTGGCAGTG 58.994 43.478 29.65 13.65 0.00 3.66
3920 4596 4.292186 ACATGAAATCAGTACTGGCAGT 57.708 40.909 25.34 25.34 0.00 4.40
3921 4597 6.539826 TCATTACATGAAATCAGTACTGGCAG 59.460 38.462 22.48 14.16 36.11 4.85
3954 4630 6.539649 CACAGAAGGTGTTCGATAAGAAAA 57.460 37.500 0.00 0.00 42.75 2.29
4020 4696 2.290367 CCACACAGCGACAAAGATCAAA 59.710 45.455 0.00 0.00 0.00 2.69
4038 4714 1.065199 TGAATCAGATCACAGGGCCAC 60.065 52.381 6.18 0.00 0.00 5.01
4041 4717 1.307097 GCTGAATCAGATCACAGGGC 58.693 55.000 15.38 0.00 32.44 5.19
4046 4722 6.432607 TCAAATCTTGCTGAATCAGATCAC 57.567 37.500 15.38 0.00 32.44 3.06
4059 4735 0.522915 GCGAGCTGCTCAAATCTTGC 60.523 55.000 27.46 17.14 41.73 4.01
4076 4767 0.725784 GGAAAACACACAGATGCGCG 60.726 55.000 0.00 0.00 0.00 6.86
4077 4768 0.593128 AGGAAAACACACAGATGCGC 59.407 50.000 0.00 0.00 0.00 6.09
4078 4769 1.872952 TCAGGAAAACACACAGATGCG 59.127 47.619 0.00 0.00 0.00 4.73
4083 4774 4.320494 GCACCTAATCAGGAAAACACACAG 60.320 45.833 0.00 0.00 45.91 3.66
4118 4849 0.249868 TTCCTGCGGAAGACACACAG 60.250 55.000 6.01 0.00 36.71 3.66
4120 4851 1.523758 AATTCCTGCGGAAGACACAC 58.476 50.000 13.92 0.00 45.48 3.82
4131 4862 2.887790 GGAGGACCCAAATTCCTGC 58.112 57.895 0.00 0.00 44.03 4.85
4133 4864 1.760405 ACTGGAGGACCCAAATTCCT 58.240 50.000 0.00 0.00 46.07 3.36
4137 4868 3.500343 CTTCAAACTGGAGGACCCAAAT 58.500 45.455 0.00 0.00 46.07 2.32
4150 4881 5.390387 AGACTACTCTGTCTCCTTCAAACT 58.610 41.667 0.00 0.00 43.04 2.66
4167 4898 7.672983 TCAAGATGAACCAAAATGAGACTAC 57.327 36.000 0.00 0.00 0.00 2.73
4169 4900 8.900781 CATATCAAGATGAACCAAAATGAGACT 58.099 33.333 0.00 0.00 0.00 3.24
4172 4903 9.678941 CATCATATCAAGATGAACCAAAATGAG 57.321 33.333 0.00 0.00 44.34 2.90
4201 4932 4.712337 GTCTTCCTTCTCCCAAGAGTATCA 59.288 45.833 0.00 0.00 41.26 2.15
4208 4939 2.816672 GCTTTGTCTTCCTTCTCCCAAG 59.183 50.000 0.00 0.00 0.00 3.61
4210 4941 1.774254 TGCTTTGTCTTCCTTCTCCCA 59.226 47.619 0.00 0.00 0.00 4.37
4219 4950 3.360249 AAGTGCATGTGCTTTGTCTTC 57.640 42.857 6.55 0.00 42.66 2.87
4222 4953 4.797471 TCATAAAGTGCATGTGCTTTGTC 58.203 39.130 19.67 0.00 42.66 3.18
4251 4985 6.423905 TCCGCTACATATTTTGAACATAGAGC 59.576 38.462 0.00 0.00 0.00 4.09
4261 4995 3.869246 ACCGTTCTCCGCTACATATTTTG 59.131 43.478 0.00 0.00 34.38 2.44
4263 4997 3.814005 ACCGTTCTCCGCTACATATTT 57.186 42.857 0.00 0.00 34.38 1.40
4270 5004 1.593265 GGGAAACCGTTCTCCGCTA 59.407 57.895 6.47 0.00 43.64 4.26
4271 5005 2.346365 GGGAAACCGTTCTCCGCT 59.654 61.111 6.47 0.00 43.64 5.52
4292 5026 2.435805 TCCCAAGATGAGGTACTGATGC 59.564 50.000 0.00 0.00 41.55 3.91
4311 5045 8.940397 TTTCCCCTGATATCAATTAATCTTCC 57.060 34.615 6.90 0.00 0.00 3.46
4345 5079 9.762933 AAACAACATAGCTACATTGACATTTTT 57.237 25.926 20.41 10.35 0.00 1.94
4346 5080 9.410556 GAAACAACATAGCTACATTGACATTTT 57.589 29.630 20.41 12.45 0.00 1.82
4359 5093 1.616994 GGGGCAGGAAACAACATAGCT 60.617 52.381 0.00 0.00 0.00 3.32
4361 5095 2.094675 CTGGGGCAGGAAACAACATAG 58.905 52.381 0.00 0.00 0.00 2.23
4380 5114 3.756117 CCTTTCAAGCAGGGACTTAACT 58.244 45.455 0.00 0.00 34.60 2.24
4405 5139 3.844090 GGACCGAGCTCTGCCTCC 61.844 72.222 12.85 5.62 0.00 4.30
4409 5143 1.004440 AACTTGGACCGAGCTCTGC 60.004 57.895 12.85 0.00 0.00 4.26
4417 5151 2.561569 ACACTTTCTCAACTTGGACCG 58.438 47.619 0.00 0.00 0.00 4.79
4422 5156 5.990408 AGCGAAATACACTTTCTCAACTTG 58.010 37.500 0.00 0.00 0.00 3.16
4427 5161 8.942338 ATATTGTAGCGAAATACACTTTCTCA 57.058 30.769 0.00 0.00 35.44 3.27
4438 5172 8.507249 GCATCCTCTAAAATATTGTAGCGAAAT 58.493 33.333 7.69 0.00 0.00 2.17
4442 5176 6.785488 TGCATCCTCTAAAATATTGTAGCG 57.215 37.500 7.69 2.14 0.00 4.26
4446 5180 6.547510 GGTCCTTGCATCCTCTAAAATATTGT 59.452 38.462 0.00 0.00 0.00 2.71
4448 5182 5.765182 CGGTCCTTGCATCCTCTAAAATATT 59.235 40.000 0.00 0.00 0.00 1.28
4495 5229 3.070018 GACTGACATGAAAGGACAGGTG 58.930 50.000 0.00 0.00 34.97 4.00
4497 5231 3.407424 TGACTGACATGAAAGGACAGG 57.593 47.619 0.00 0.00 33.57 4.00
4503 5237 4.758674 AGACCACAATGACTGACATGAAAG 59.241 41.667 0.00 0.00 39.39 2.62
4511 5245 2.865119 ATGCAGACCACAATGACTGA 57.135 45.000 0.00 0.00 32.90 3.41
4516 5250 2.679336 TGATCGAATGCAGACCACAATG 59.321 45.455 0.00 0.00 0.00 2.82
4519 5253 2.169144 AGATGATCGAATGCAGACCACA 59.831 45.455 0.00 0.00 0.00 4.17
4532 5266 5.043903 ACTCGAACAATACCAAGATGATCG 58.956 41.667 0.00 0.00 39.68 3.69
4551 5285 0.520412 CCAACCGCGCAATTTACTCG 60.520 55.000 8.75 0.00 0.00 4.18
4560 5294 0.391793 TCATGTAATCCAACCGCGCA 60.392 50.000 8.75 0.00 0.00 6.09
4561 5295 0.730265 TTCATGTAATCCAACCGCGC 59.270 50.000 0.00 0.00 0.00 6.86
4562 5296 2.418628 AGTTTCATGTAATCCAACCGCG 59.581 45.455 0.00 0.00 0.00 6.46
4563 5297 3.190535 ACAGTTTCATGTAATCCAACCGC 59.809 43.478 0.00 0.00 0.00 5.68
4570 5304 6.795098 TGTACCACACAGTTTCATGTAATC 57.205 37.500 0.00 0.00 31.89 1.75
4583 5317 3.432467 CCAACCACTAACTGTACCACACA 60.432 47.826 0.00 0.00 35.30 3.72
4590 5324 2.635915 CTGTCCCCAACCACTAACTGTA 59.364 50.000 0.00 0.00 0.00 2.74
4614 5348 0.301687 CCACATGCGTATGCTCGAAC 59.698 55.000 13.82 0.00 43.34 3.95
4619 5353 4.893608 TGTATATTCCACATGCGTATGCT 58.106 39.130 13.82 0.00 43.34 3.79
4620 5354 5.562917 CATGTATATTCCACATGCGTATGC 58.437 41.667 13.82 0.00 44.78 3.14
4642 5376 9.907229 TTGTAAATTCCACATGTATATACCACA 57.093 29.630 10.38 0.00 0.00 4.17
4648 5382 9.693739 TTCCAGTTGTAAATTCCACATGTATAT 57.306 29.630 0.00 0.00 0.00 0.86
4649 5383 9.693739 ATTCCAGTTGTAAATTCCACATGTATA 57.306 29.630 0.00 0.00 0.00 1.47
4650 5384 8.593945 ATTCCAGTTGTAAATTCCACATGTAT 57.406 30.769 0.00 0.00 0.00 2.29
4651 5385 9.693739 ATATTCCAGTTGTAAATTCCACATGTA 57.306 29.630 0.00 0.00 0.00 2.29
4652 5386 6.916360 ATTCCAGTTGTAAATTCCACATGT 57.084 33.333 0.00 0.00 0.00 3.21
4653 5387 7.922278 CCATATTCCAGTTGTAAATTCCACATG 59.078 37.037 0.00 0.00 0.00 3.21
4654 5388 7.838696 TCCATATTCCAGTTGTAAATTCCACAT 59.161 33.333 0.00 0.00 0.00 3.21
4655 5389 7.178573 TCCATATTCCAGTTGTAAATTCCACA 58.821 34.615 0.00 0.00 0.00 4.17
4656 5390 7.639113 TCCATATTCCAGTTGTAAATTCCAC 57.361 36.000 0.00 0.00 0.00 4.02
4657 5391 7.838696 ACATCCATATTCCAGTTGTAAATTCCA 59.161 33.333 0.00 0.00 0.00 3.53
4658 5392 8.137437 CACATCCATATTCCAGTTGTAAATTCC 58.863 37.037 0.00 0.00 0.00 3.01
4659 5393 8.137437 CCACATCCATATTCCAGTTGTAAATTC 58.863 37.037 0.00 0.00 0.00 2.17
4660 5394 7.417797 GCCACATCCATATTCCAGTTGTAAATT 60.418 37.037 0.00 0.00 0.00 1.82
4661 5395 6.040842 GCCACATCCATATTCCAGTTGTAAAT 59.959 38.462 0.00 0.00 0.00 1.40
4662 5396 5.359576 GCCACATCCATATTCCAGTTGTAAA 59.640 40.000 0.00 0.00 0.00 2.01
4663 5397 4.887071 GCCACATCCATATTCCAGTTGTAA 59.113 41.667 0.00 0.00 0.00 2.41
4664 5398 4.080072 TGCCACATCCATATTCCAGTTGTA 60.080 41.667 0.00 0.00 0.00 2.41
4665 5399 3.290710 GCCACATCCATATTCCAGTTGT 58.709 45.455 0.00 0.00 0.00 3.32
4666 5400 3.289836 TGCCACATCCATATTCCAGTTG 58.710 45.455 0.00 0.00 0.00 3.16
4667 5401 3.668141 TGCCACATCCATATTCCAGTT 57.332 42.857 0.00 0.00 0.00 3.16
4668 5402 3.889859 ATGCCACATCCATATTCCAGT 57.110 42.857 0.00 0.00 0.00 4.00
4669 5403 6.417258 TGTATATGCCACATCCATATTCCAG 58.583 40.000 0.00 0.00 37.19 3.86
4670 5404 6.385766 TGTATATGCCACATCCATATTCCA 57.614 37.500 0.00 0.00 37.19 3.53
4671 5405 6.830324 ACATGTATATGCCACATCCATATTCC 59.170 38.462 0.00 0.00 37.19 3.01
4672 5406 7.870509 ACATGTATATGCCACATCCATATTC 57.129 36.000 0.00 0.00 37.19 1.75
4673 5407 7.123098 CCAACATGTATATGCCACATCCATATT 59.877 37.037 0.00 0.00 37.19 1.28
4674 5408 6.604396 CCAACATGTATATGCCACATCCATAT 59.396 38.462 0.00 0.00 38.85 1.78
4675 5409 5.945191 CCAACATGTATATGCCACATCCATA 59.055 40.000 0.00 0.00 37.85 2.74
4676 5410 4.768448 CCAACATGTATATGCCACATCCAT 59.232 41.667 0.00 0.00 37.85 3.41
4677 5411 4.141298 TCCAACATGTATATGCCACATCCA 60.141 41.667 0.00 0.00 37.85 3.41
4678 5412 4.397420 TCCAACATGTATATGCCACATCC 58.603 43.478 0.00 0.00 37.85 3.51
4679 5413 6.005583 CTTCCAACATGTATATGCCACATC 57.994 41.667 0.00 0.00 37.85 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.