Multiple sequence alignment - TraesCS2D01G479300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G479300 chr2D 100.000 3041 0 0 1 3041 580187258 580190298 0.000000e+00 5616.0
1 TraesCS2D01G479300 chr2A 92.898 1211 68 10 793 1995 718108849 718110049 0.000000e+00 1744.0
2 TraesCS2D01G479300 chr2A 95.288 191 8 1 2618 2807 718115097 718115287 4.930000e-78 302.0
3 TraesCS2D01G479300 chr2A 86.142 267 30 7 401 663 718103977 718104240 6.420000e-72 281.0
4 TraesCS2D01G479300 chr2A 91.626 203 15 2 2096 2296 718110733 718110935 2.310000e-71 279.0
5 TraesCS2D01G479300 chr2A 91.979 187 14 1 2448 2634 718114898 718115083 8.360000e-66 261.0
6 TraesCS2D01G479300 chr2A 86.525 141 4 3 657 786 718104593 718104729 1.140000e-29 141.0
7 TraesCS2D01G479300 chr2A 80.488 164 21 9 2074 2226 638321999 638321836 6.890000e-22 115.0
8 TraesCS2D01G479300 chr2B 92.842 922 47 12 766 1672 699087415 699088332 0.000000e+00 1319.0
9 TraesCS2D01G479300 chr2B 95.278 360 16 1 2448 2807 699104386 699104744 1.220000e-158 569.0
10 TraesCS2D01G479300 chr2B 90.000 370 31 4 2084 2449 699102872 699103239 9.870000e-130 473.0
11 TraesCS2D01G479300 chr2B 91.946 298 21 1 1669 1963 699101986 699102283 6.070000e-112 414.0
12 TraesCS2D01G479300 chr2B 93.711 159 10 0 2810 2968 699105391 699105549 3.920000e-59 239.0
13 TraesCS2D01G479300 chr2B 85.621 153 18 1 566 718 699079021 699079169 1.130000e-34 158.0
14 TraesCS2D01G479300 chr2B 93.671 79 5 0 2963 3041 699105858 699105936 5.330000e-23 119.0
15 TraesCS2D01G479300 chr3B 83.838 99 9 5 2066 2158 810285600 810285503 1.500000e-13 87.9
16 TraesCS2D01G479300 chr3B 79.000 100 11 7 2191 2289 652734076 652733986 3.270000e-05 60.2
17 TraesCS2D01G479300 chr7A 82.955 88 10 3 2074 2157 715709141 715709055 1.170000e-09 75.0
18 TraesCS2D01G479300 chr7B 87.273 55 6 1 2053 2107 72507664 72507611 9.100000e-06 62.1
19 TraesCS2D01G479300 chr6A 89.583 48 5 0 2111 2158 110337420 110337373 9.100000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G479300 chr2D 580187258 580190298 3040 False 5616.0 5616 100.00000 1 3041 1 chr2D.!!$F1 3040
1 TraesCS2D01G479300 chr2A 718108849 718115287 6438 False 646.5 1744 92.94775 793 2807 4 chr2A.!!$F2 2014
2 TraesCS2D01G479300 chr2A 718103977 718104729 752 False 211.0 281 86.33350 401 786 2 chr2A.!!$F1 385
3 TraesCS2D01G479300 chr2B 699087415 699088332 917 False 1319.0 1319 92.84200 766 1672 1 chr2B.!!$F2 906
4 TraesCS2D01G479300 chr2B 699101986 699105936 3950 False 362.8 569 92.92120 1669 3041 5 chr2B.!!$F3 1372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.033306 TATGCCTGCCTCCATTGCAA 60.033 50.0 0.00 0.0 38.46 4.08 F
147 148 0.038892 CTGCCTCCATTGCAACACAC 60.039 55.0 0.00 0.0 38.46 3.82 F
544 547 0.108186 ATCTCATTGCAACGAGGCGA 60.108 50.0 21.35 4.1 36.28 5.54 F
1963 2357 0.304705 GGCGCCACATGATAAAGACG 59.695 55.0 24.80 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1075 1460 0.038159 GTTGACAGGGTCGAGGACAG 60.038 60.0 0.00 0.00 34.95 3.51 R
2003 2397 0.247655 CATCGCCGACAACAAATCCG 60.248 55.0 0.00 0.00 0.00 4.18 R
2006 2400 0.447801 GCTCATCGCCGACAACAAAT 59.552 50.0 0.00 0.00 0.00 2.32 R
2945 9004 0.238553 GACCTTCTTGAAGGCGTTGC 59.761 55.0 24.58 9.27 43.80 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.441718 TCAACATGGCTCCTTTAGAATCT 57.558 39.130 0.00 0.00 0.00 2.40
23 24 5.431765 TCAACATGGCTCCTTTAGAATCTC 58.568 41.667 0.00 0.00 0.00 2.75
24 25 5.190528 TCAACATGGCTCCTTTAGAATCTCT 59.809 40.000 0.00 0.00 0.00 3.10
25 26 5.707066 ACATGGCTCCTTTAGAATCTCTT 57.293 39.130 0.00 0.00 0.00 2.85
26 27 5.679601 ACATGGCTCCTTTAGAATCTCTTC 58.320 41.667 0.00 0.00 0.00 2.87
27 28 4.762289 TGGCTCCTTTAGAATCTCTTCC 57.238 45.455 0.00 0.00 31.27 3.46
28 29 3.456277 TGGCTCCTTTAGAATCTCTTCCC 59.544 47.826 0.00 0.00 31.27 3.97
29 30 3.714280 GGCTCCTTTAGAATCTCTTCCCT 59.286 47.826 0.00 0.00 31.27 4.20
30 31 4.902448 GGCTCCTTTAGAATCTCTTCCCTA 59.098 45.833 0.00 0.00 31.27 3.53
31 32 5.546110 GGCTCCTTTAGAATCTCTTCCCTAT 59.454 44.000 0.00 0.00 31.27 2.57
32 33 6.043822 GGCTCCTTTAGAATCTCTTCCCTATT 59.956 42.308 0.00 0.00 31.27 1.73
33 34 7.158697 GCTCCTTTAGAATCTCTTCCCTATTC 58.841 42.308 0.00 0.00 31.27 1.75
34 35 7.202047 GCTCCTTTAGAATCTCTTCCCTATTCA 60.202 40.741 0.00 0.00 33.06 2.57
35 36 8.805145 TCCTTTAGAATCTCTTCCCTATTCAT 57.195 34.615 0.00 0.00 33.06 2.57
36 37 8.875168 TCCTTTAGAATCTCTTCCCTATTCATC 58.125 37.037 0.00 0.00 33.06 2.92
37 38 8.654997 CCTTTAGAATCTCTTCCCTATTCATCA 58.345 37.037 0.00 0.00 33.06 3.07
38 39 9.487790 CTTTAGAATCTCTTCCCTATTCATCAC 57.512 37.037 0.00 0.00 33.06 3.06
39 40 6.432403 AGAATCTCTTCCCTATTCATCACC 57.568 41.667 0.00 0.00 33.06 4.02
40 41 6.149616 AGAATCTCTTCCCTATTCATCACCT 58.850 40.000 0.00 0.00 33.06 4.00
41 42 6.619023 AGAATCTCTTCCCTATTCATCACCTT 59.381 38.462 0.00 0.00 33.06 3.50
42 43 5.878406 TCTCTTCCCTATTCATCACCTTC 57.122 43.478 0.00 0.00 0.00 3.46
43 44 5.280499 TCTCTTCCCTATTCATCACCTTCA 58.720 41.667 0.00 0.00 0.00 3.02
44 45 5.907662 TCTCTTCCCTATTCATCACCTTCAT 59.092 40.000 0.00 0.00 0.00 2.57
45 46 6.042552 TCTCTTCCCTATTCATCACCTTCATC 59.957 42.308 0.00 0.00 0.00 2.92
46 47 5.907662 TCTTCCCTATTCATCACCTTCATCT 59.092 40.000 0.00 0.00 0.00 2.90
47 48 6.388100 TCTTCCCTATTCATCACCTTCATCTT 59.612 38.462 0.00 0.00 0.00 2.40
48 49 6.581388 TCCCTATTCATCACCTTCATCTTT 57.419 37.500 0.00 0.00 0.00 2.52
49 50 6.973642 TCCCTATTCATCACCTTCATCTTTT 58.026 36.000 0.00 0.00 0.00 2.27
50 51 6.830324 TCCCTATTCATCACCTTCATCTTTTG 59.170 38.462 0.00 0.00 0.00 2.44
51 52 6.460676 CCCTATTCATCACCTTCATCTTTTGC 60.461 42.308 0.00 0.00 0.00 3.68
52 53 4.789012 TTCATCACCTTCATCTTTTGCC 57.211 40.909 0.00 0.00 0.00 4.52
53 54 3.765381 TCATCACCTTCATCTTTTGCCA 58.235 40.909 0.00 0.00 0.00 4.92
54 55 3.507233 TCATCACCTTCATCTTTTGCCAC 59.493 43.478 0.00 0.00 0.00 5.01
55 56 2.942804 TCACCTTCATCTTTTGCCACA 58.057 42.857 0.00 0.00 0.00 4.17
56 57 2.622942 TCACCTTCATCTTTTGCCACAC 59.377 45.455 0.00 0.00 0.00 3.82
57 58 1.608590 ACCTTCATCTTTTGCCACACG 59.391 47.619 0.00 0.00 0.00 4.49
58 59 1.879380 CCTTCATCTTTTGCCACACGA 59.121 47.619 0.00 0.00 0.00 4.35
59 60 2.489329 CCTTCATCTTTTGCCACACGAT 59.511 45.455 0.00 0.00 0.00 3.73
60 61 3.426695 CCTTCATCTTTTGCCACACGATC 60.427 47.826 0.00 0.00 0.00 3.69
61 62 2.083774 TCATCTTTTGCCACACGATCC 58.916 47.619 0.00 0.00 0.00 3.36
62 63 2.086869 CATCTTTTGCCACACGATCCT 58.913 47.619 0.00 0.00 0.00 3.24
63 64 3.055458 TCATCTTTTGCCACACGATCCTA 60.055 43.478 0.00 0.00 0.00 2.94
64 65 3.410631 TCTTTTGCCACACGATCCTAA 57.589 42.857 0.00 0.00 0.00 2.69
65 66 3.071479 TCTTTTGCCACACGATCCTAAC 58.929 45.455 0.00 0.00 0.00 2.34
66 67 1.816074 TTTGCCACACGATCCTAACC 58.184 50.000 0.00 0.00 0.00 2.85
67 68 0.687920 TTGCCACACGATCCTAACCA 59.312 50.000 0.00 0.00 0.00 3.67
68 69 0.687920 TGCCACACGATCCTAACCAA 59.312 50.000 0.00 0.00 0.00 3.67
69 70 1.072489 TGCCACACGATCCTAACCAAA 59.928 47.619 0.00 0.00 0.00 3.28
70 71 1.737793 GCCACACGATCCTAACCAAAG 59.262 52.381 0.00 0.00 0.00 2.77
71 72 1.737793 CCACACGATCCTAACCAAAGC 59.262 52.381 0.00 0.00 0.00 3.51
72 73 2.422597 CACACGATCCTAACCAAAGCA 58.577 47.619 0.00 0.00 0.00 3.91
73 74 2.159627 CACACGATCCTAACCAAAGCAC 59.840 50.000 0.00 0.00 0.00 4.40
74 75 2.038557 ACACGATCCTAACCAAAGCACT 59.961 45.455 0.00 0.00 0.00 4.40
75 76 2.673368 CACGATCCTAACCAAAGCACTC 59.327 50.000 0.00 0.00 0.00 3.51
76 77 1.927174 CGATCCTAACCAAAGCACTCG 59.073 52.381 0.00 0.00 0.00 4.18
77 78 1.666189 GATCCTAACCAAAGCACTCGC 59.334 52.381 0.00 0.00 38.99 5.03
78 79 0.669318 TCCTAACCAAAGCACTCGCG 60.669 55.000 0.00 0.00 45.49 5.87
79 80 0.669318 CCTAACCAAAGCACTCGCGA 60.669 55.000 9.26 9.26 45.49 5.87
80 81 1.359848 CTAACCAAAGCACTCGCGAT 58.640 50.000 10.36 0.00 45.49 4.58
81 82 1.061131 CTAACCAAAGCACTCGCGATG 59.939 52.381 10.36 11.65 45.49 3.84
82 83 0.884704 AACCAAAGCACTCGCGATGT 60.885 50.000 10.36 7.38 45.49 3.06
83 84 1.291877 ACCAAAGCACTCGCGATGTC 61.292 55.000 10.36 0.81 45.49 3.06
84 85 1.016130 CCAAAGCACTCGCGATGTCT 61.016 55.000 10.36 3.55 45.49 3.41
85 86 0.368227 CAAAGCACTCGCGATGTCTC 59.632 55.000 10.36 4.55 45.49 3.36
86 87 0.244994 AAAGCACTCGCGATGTCTCT 59.755 50.000 10.36 6.71 45.49 3.10
87 88 1.095600 AAGCACTCGCGATGTCTCTA 58.904 50.000 10.36 0.00 45.49 2.43
88 89 1.313772 AGCACTCGCGATGTCTCTAT 58.686 50.000 10.36 0.00 45.49 1.98
89 90 1.678627 AGCACTCGCGATGTCTCTATT 59.321 47.619 10.36 0.00 45.49 1.73
90 91 1.783711 GCACTCGCGATGTCTCTATTG 59.216 52.381 10.36 0.00 0.00 1.90
91 92 2.541794 GCACTCGCGATGTCTCTATTGA 60.542 50.000 10.36 0.00 0.00 2.57
92 93 3.295785 CACTCGCGATGTCTCTATTGAG 58.704 50.000 10.36 0.00 41.51 3.02
93 94 2.292016 ACTCGCGATGTCTCTATTGAGG 59.708 50.000 10.36 0.00 40.58 3.86
94 95 1.001268 TCGCGATGTCTCTATTGAGGC 60.001 52.381 3.71 1.49 44.68 4.70
102 103 4.634184 GTCTCTATTGAGGCAGTCGTAA 57.366 45.455 3.78 0.00 43.92 3.18
103 104 5.189659 GTCTCTATTGAGGCAGTCGTAAT 57.810 43.478 3.78 0.00 43.92 1.89
104 105 5.593010 GTCTCTATTGAGGCAGTCGTAATT 58.407 41.667 3.78 0.00 43.92 1.40
105 106 5.460419 GTCTCTATTGAGGCAGTCGTAATTG 59.540 44.000 3.78 0.00 43.92 2.32
106 107 4.693283 TCTATTGAGGCAGTCGTAATTGG 58.307 43.478 0.00 0.00 0.00 3.16
107 108 2.851263 TTGAGGCAGTCGTAATTGGT 57.149 45.000 0.00 0.00 0.00 3.67
108 109 3.965379 TTGAGGCAGTCGTAATTGGTA 57.035 42.857 0.00 0.00 0.00 3.25
109 110 4.481368 TTGAGGCAGTCGTAATTGGTAT 57.519 40.909 0.00 0.00 0.00 2.73
110 111 4.481368 TGAGGCAGTCGTAATTGGTATT 57.519 40.909 0.00 0.00 0.00 1.89
111 112 4.188462 TGAGGCAGTCGTAATTGGTATTG 58.812 43.478 0.00 0.00 0.00 1.90
112 113 4.081365 TGAGGCAGTCGTAATTGGTATTGA 60.081 41.667 0.00 0.00 0.00 2.57
113 114 4.839121 AGGCAGTCGTAATTGGTATTGAA 58.161 39.130 0.00 0.00 0.00 2.69
114 115 5.437060 AGGCAGTCGTAATTGGTATTGAAT 58.563 37.500 0.00 0.00 0.00 2.57
115 116 5.527582 AGGCAGTCGTAATTGGTATTGAATC 59.472 40.000 0.00 0.00 0.00 2.52
116 117 5.295787 GGCAGTCGTAATTGGTATTGAATCA 59.704 40.000 0.00 0.00 0.00 2.57
117 118 6.183360 GGCAGTCGTAATTGGTATTGAATCAA 60.183 38.462 0.00 0.00 0.00 2.57
118 119 6.687105 GCAGTCGTAATTGGTATTGAATCAAC 59.313 38.462 0.00 0.00 0.00 3.18
119 120 7.625395 GCAGTCGTAATTGGTATTGAATCAACA 60.625 37.037 0.00 0.00 0.00 3.33
120 121 8.233868 CAGTCGTAATTGGTATTGAATCAACAA 58.766 33.333 0.00 0.00 0.00 2.83
121 122 8.788806 AGTCGTAATTGGTATTGAATCAACAAA 58.211 29.630 0.00 0.00 33.44 2.83
122 123 9.400638 GTCGTAATTGGTATTGAATCAACAAAA 57.599 29.630 0.00 0.00 33.44 2.44
128 129 8.715191 TTGGTATTGAATCAACAAAATATGCC 57.285 30.769 0.00 0.00 33.44 4.40
129 130 8.076910 TGGTATTGAATCAACAAAATATGCCT 57.923 30.769 0.00 0.00 33.44 4.75
130 131 7.980662 TGGTATTGAATCAACAAAATATGCCTG 59.019 33.333 0.00 0.00 33.44 4.85
131 132 6.913873 ATTGAATCAACAAAATATGCCTGC 57.086 33.333 0.00 0.00 33.44 4.85
132 133 4.757594 TGAATCAACAAAATATGCCTGCC 58.242 39.130 0.00 0.00 0.00 4.85
133 134 4.467082 TGAATCAACAAAATATGCCTGCCT 59.533 37.500 0.00 0.00 0.00 4.75
134 135 4.660789 ATCAACAAAATATGCCTGCCTC 57.339 40.909 0.00 0.00 0.00 4.70
135 136 2.760092 TCAACAAAATATGCCTGCCTCC 59.240 45.455 0.00 0.00 0.00 4.30
136 137 2.496871 CAACAAAATATGCCTGCCTCCA 59.503 45.455 0.00 0.00 0.00 3.86
137 138 3.036452 ACAAAATATGCCTGCCTCCAT 57.964 42.857 0.00 0.00 0.00 3.41
138 139 3.377573 ACAAAATATGCCTGCCTCCATT 58.622 40.909 0.00 0.00 0.00 3.16
139 140 3.133362 ACAAAATATGCCTGCCTCCATTG 59.867 43.478 0.00 0.00 0.00 2.82
140 141 1.335145 AATATGCCTGCCTCCATTGC 58.665 50.000 0.00 0.00 0.00 3.56
141 142 0.186630 ATATGCCTGCCTCCATTGCA 59.813 50.000 0.00 0.00 37.17 4.08
142 143 0.033306 TATGCCTGCCTCCATTGCAA 60.033 50.000 0.00 0.00 38.46 4.08
143 144 1.610554 ATGCCTGCCTCCATTGCAAC 61.611 55.000 0.00 0.00 38.46 4.17
144 145 2.277591 GCCTGCCTCCATTGCAACA 61.278 57.895 0.00 0.00 38.46 3.33
145 146 1.588082 CCTGCCTCCATTGCAACAC 59.412 57.895 0.00 0.00 38.46 3.32
146 147 1.180456 CCTGCCTCCATTGCAACACA 61.180 55.000 0.00 0.00 38.46 3.72
147 148 0.038892 CTGCCTCCATTGCAACACAC 60.039 55.000 0.00 0.00 38.46 3.82
148 149 1.081242 GCCTCCATTGCAACACACG 60.081 57.895 0.00 0.00 0.00 4.49
149 150 1.580942 CCTCCATTGCAACACACGG 59.419 57.895 0.00 0.00 0.00 4.94
150 151 0.888736 CCTCCATTGCAACACACGGA 60.889 55.000 0.00 2.21 0.00 4.69
151 152 0.238289 CTCCATTGCAACACACGGAC 59.762 55.000 0.00 0.00 0.00 4.79
152 153 0.464554 TCCATTGCAACACACGGACA 60.465 50.000 0.00 0.00 0.00 4.02
153 154 0.383590 CCATTGCAACACACGGACAA 59.616 50.000 0.00 0.00 0.00 3.18
154 155 1.000385 CCATTGCAACACACGGACAAT 60.000 47.619 0.00 0.00 0.00 2.71
155 156 2.545532 CCATTGCAACACACGGACAATT 60.546 45.455 0.00 0.00 0.00 2.32
156 157 3.304996 CCATTGCAACACACGGACAATTA 60.305 43.478 0.00 0.00 0.00 1.40
157 158 4.294232 CATTGCAACACACGGACAATTAA 58.706 39.130 0.00 0.00 0.00 1.40
158 159 3.617540 TGCAACACACGGACAATTAAG 57.382 42.857 0.00 0.00 0.00 1.85
159 160 2.946329 TGCAACACACGGACAATTAAGT 59.054 40.909 0.00 0.00 0.00 2.24
160 161 3.378742 TGCAACACACGGACAATTAAGTT 59.621 39.130 0.00 0.00 0.00 2.66
161 162 3.728718 GCAACACACGGACAATTAAGTTG 59.271 43.478 0.00 0.00 43.64 3.16
162 163 3.619233 ACACACGGACAATTAAGTTGC 57.381 42.857 0.00 0.00 41.69 4.17
163 164 3.211045 ACACACGGACAATTAAGTTGCT 58.789 40.909 0.00 0.00 41.69 3.91
164 165 4.382291 ACACACGGACAATTAAGTTGCTA 58.618 39.130 0.00 0.00 41.69 3.49
165 166 4.817464 ACACACGGACAATTAAGTTGCTAA 59.183 37.500 0.00 0.00 41.69 3.09
166 167 5.472137 ACACACGGACAATTAAGTTGCTAAT 59.528 36.000 0.00 0.00 41.69 1.73
167 168 6.651643 ACACACGGACAATTAAGTTGCTAATA 59.348 34.615 0.00 0.00 41.69 0.98
168 169 7.173562 ACACACGGACAATTAAGTTGCTAATAA 59.826 33.333 0.00 0.00 41.69 1.40
169 170 8.181573 CACACGGACAATTAAGTTGCTAATAAT 58.818 33.333 0.00 0.00 41.69 1.28
170 171 9.386010 ACACGGACAATTAAGTTGCTAATAATA 57.614 29.630 0.00 0.00 41.69 0.98
199 200 7.972832 ATACTCCATAGTTGACGAACAAAAA 57.027 32.000 0.00 0.00 40.36 1.94
256 257 3.576078 TTTTCTGTTCTTGGGCTGAGA 57.424 42.857 0.00 0.00 0.00 3.27
257 258 3.795688 TTTCTGTTCTTGGGCTGAGAT 57.204 42.857 0.00 0.00 0.00 2.75
258 259 3.795688 TTCTGTTCTTGGGCTGAGATT 57.204 42.857 0.00 0.00 0.00 2.40
259 260 3.795688 TCTGTTCTTGGGCTGAGATTT 57.204 42.857 0.00 0.00 0.00 2.17
260 261 3.415212 TCTGTTCTTGGGCTGAGATTTG 58.585 45.455 0.00 0.00 0.00 2.32
261 262 3.152341 CTGTTCTTGGGCTGAGATTTGT 58.848 45.455 0.00 0.00 0.00 2.83
262 263 3.565307 TGTTCTTGGGCTGAGATTTGTT 58.435 40.909 0.00 0.00 0.00 2.83
263 264 3.960102 TGTTCTTGGGCTGAGATTTGTTT 59.040 39.130 0.00 0.00 0.00 2.83
264 265 4.405358 TGTTCTTGGGCTGAGATTTGTTTT 59.595 37.500 0.00 0.00 0.00 2.43
265 266 5.596361 TGTTCTTGGGCTGAGATTTGTTTTA 59.404 36.000 0.00 0.00 0.00 1.52
266 267 5.964958 TCTTGGGCTGAGATTTGTTTTAG 57.035 39.130 0.00 0.00 0.00 1.85
267 268 4.218417 TCTTGGGCTGAGATTTGTTTTAGC 59.782 41.667 0.00 0.00 0.00 3.09
268 269 3.766545 TGGGCTGAGATTTGTTTTAGCT 58.233 40.909 0.00 0.00 0.00 3.32
269 270 4.151883 TGGGCTGAGATTTGTTTTAGCTT 58.848 39.130 0.00 0.00 0.00 3.74
270 271 5.321102 TGGGCTGAGATTTGTTTTAGCTTA 58.679 37.500 0.00 0.00 0.00 3.09
271 272 5.183140 TGGGCTGAGATTTGTTTTAGCTTAC 59.817 40.000 0.00 0.00 0.00 2.34
272 273 5.183140 GGGCTGAGATTTGTTTTAGCTTACA 59.817 40.000 0.00 0.00 0.00 2.41
273 274 6.294508 GGGCTGAGATTTGTTTTAGCTTACAA 60.295 38.462 0.00 0.00 32.76 2.41
274 275 7.145323 GGCTGAGATTTGTTTTAGCTTACAAA 58.855 34.615 17.97 17.97 45.23 2.83
275 276 7.114953 GGCTGAGATTTGTTTTAGCTTACAAAC 59.885 37.037 18.01 13.35 44.32 2.93
276 277 7.114953 GCTGAGATTTGTTTTAGCTTACAAACC 59.885 37.037 18.01 12.01 44.32 3.27
277 278 8.001881 TGAGATTTGTTTTAGCTTACAAACCA 57.998 30.769 18.01 14.40 44.32 3.67
278 279 8.637986 TGAGATTTGTTTTAGCTTACAAACCAT 58.362 29.630 18.01 10.50 44.32 3.55
279 280 9.476202 GAGATTTGTTTTAGCTTACAAACCATT 57.524 29.630 18.01 7.54 44.32 3.16
318 319 9.773328 ATATTTTACAGATTCATTGTGAACACG 57.227 29.630 0.00 0.00 39.45 4.49
319 320 3.542712 ACAGATTCATTGTGAACACGC 57.457 42.857 0.00 0.00 39.45 5.34
320 321 2.877786 ACAGATTCATTGTGAACACGCA 59.122 40.909 0.00 0.00 39.45 5.24
321 322 3.228749 CAGATTCATTGTGAACACGCAC 58.771 45.455 0.00 0.00 39.45 5.34
322 323 2.877786 AGATTCATTGTGAACACGCACA 59.122 40.909 0.00 0.00 46.26 4.57
328 329 1.732941 TGTGAACACGCACAAGTTCT 58.267 45.000 0.00 0.00 45.08 3.01
329 330 1.663643 TGTGAACACGCACAAGTTCTC 59.336 47.619 0.00 0.00 45.08 2.87
330 331 1.663643 GTGAACACGCACAAGTTCTCA 59.336 47.619 0.00 0.00 43.38 3.27
331 332 1.663643 TGAACACGCACAAGTTCTCAC 59.336 47.619 0.00 0.00 43.38 3.51
332 333 1.663643 GAACACGCACAAGTTCTCACA 59.336 47.619 0.00 0.00 40.63 3.58
333 334 1.732941 ACACGCACAAGTTCTCACAA 58.267 45.000 0.00 0.00 0.00 3.33
334 335 2.288666 ACACGCACAAGTTCTCACAAT 58.711 42.857 0.00 0.00 0.00 2.71
335 336 2.682856 ACACGCACAAGTTCTCACAATT 59.317 40.909 0.00 0.00 0.00 2.32
336 337 3.128589 ACACGCACAAGTTCTCACAATTT 59.871 39.130 0.00 0.00 0.00 1.82
337 338 4.104776 CACGCACAAGTTCTCACAATTTT 58.895 39.130 0.00 0.00 0.00 1.82
338 339 4.562394 CACGCACAAGTTCTCACAATTTTT 59.438 37.500 0.00 0.00 0.00 1.94
431 432 8.712363 GCTTTCATCTTTTATTTTTCTTCCCAC 58.288 33.333 0.00 0.00 0.00 4.61
434 435 8.348285 TCATCTTTTATTTTTCTTCCCACGAT 57.652 30.769 0.00 0.00 0.00 3.73
440 441 3.518992 TTTTCTTCCCACGATCCCTTT 57.481 42.857 0.00 0.00 0.00 3.11
447 448 1.453155 CCACGATCCCTTTGTCCAAG 58.547 55.000 0.00 0.00 0.00 3.61
458 459 4.410492 CTTTGTCCAAGGAGTCATTTCG 57.590 45.455 0.00 0.00 0.00 3.46
469 471 7.404985 CAAGGAGTCATTTCGTAATCAATCAG 58.595 38.462 0.00 0.00 0.00 2.90
501 503 8.593945 TTATTTACCTTCTGAGCAAATTCCAT 57.406 30.769 0.00 0.00 0.00 3.41
539 542 8.846943 ACCATATTTATATCTCATTGCAACGA 57.153 30.769 0.00 0.00 0.00 3.85
540 543 8.939929 ACCATATTTATATCTCATTGCAACGAG 58.060 33.333 16.23 16.23 0.00 4.18
542 545 5.673337 TTTATATCTCATTGCAACGAGGC 57.327 39.130 21.35 0.00 0.00 4.70
544 547 0.108186 ATCTCATTGCAACGAGGCGA 60.108 50.000 21.35 4.10 36.28 5.54
545 548 0.737367 TCTCATTGCAACGAGGCGAG 60.737 55.000 21.35 11.01 36.28 5.03
546 549 2.099062 CATTGCAACGAGGCGAGC 59.901 61.111 0.00 0.00 36.28 5.03
547 550 2.358615 ATTGCAACGAGGCGAGCA 60.359 55.556 0.00 0.00 38.82 4.26
548 551 1.746615 ATTGCAACGAGGCGAGCAT 60.747 52.632 0.00 0.00 39.73 3.79
550 553 2.099062 GCAACGAGGCGAGCATTG 59.901 61.111 0.00 0.00 33.55 2.82
551 554 2.680913 GCAACGAGGCGAGCATTGT 61.681 57.895 0.00 0.00 33.55 2.71
552 555 1.421485 CAACGAGGCGAGCATTGTC 59.579 57.895 2.95 0.00 0.00 3.18
553 556 1.016130 CAACGAGGCGAGCATTGTCT 61.016 55.000 2.95 0.00 36.94 3.41
554 557 0.320771 AACGAGGCGAGCATTGTCTT 60.321 50.000 2.95 0.00 31.90 3.01
612 615 2.969443 ACTTTGCACTCACGTATTGC 57.031 45.000 7.98 7.98 34.47 3.56
637 640 1.873698 TAATTATTGACGAGCGGGCC 58.126 50.000 0.00 0.00 0.00 5.80
638 641 0.818040 AATTATTGACGAGCGGGCCC 60.818 55.000 13.57 13.57 0.00 5.80
649 652 3.269347 CGGGCCCGTGCTAAATCG 61.269 66.667 36.64 6.12 37.74 3.34
669 1031 1.823470 GCTGGGGCGTATGCATGAA 60.823 57.895 10.16 0.00 45.35 2.57
678 1040 2.285834 GCGTATGCATGAACTCTTTCCG 60.286 50.000 10.16 0.00 42.15 4.30
695 1057 7.852454 ACTCTTTCCGTAATTTTCGTTTAACAC 59.148 33.333 0.00 0.00 0.00 3.32
799 1173 2.364632 CGGATTACTTCCAATGTGCCA 58.635 47.619 0.00 0.00 45.78 4.92
841 1226 0.935898 GCCGATGCAGAGACATTGAG 59.064 55.000 0.00 0.00 33.87 3.02
853 1238 6.402011 GCAGAGACATTGAGAAGACTTTAAGC 60.402 42.308 0.00 0.00 0.00 3.09
860 1245 2.930682 GAGAAGACTTTAAGCGCCGATT 59.069 45.455 2.29 0.00 0.00 3.34
874 1259 1.217882 CCGATTATGGTCGCCTCAAC 58.782 55.000 0.00 0.00 40.17 3.18
907 1292 4.711980 GGTACGAGATGAGGTGCG 57.288 61.111 0.00 0.00 0.00 5.34
1001 1386 2.028778 GCCTCGCTGAGCATCGAT 59.971 61.111 4.88 0.00 38.61 3.59
1004 1389 0.938637 CCTCGCTGAGCATCGATGTC 60.939 60.000 25.47 20.23 38.61 3.06
1066 1451 4.083862 GGCGGAAGAGGAGGCGTT 62.084 66.667 0.00 0.00 0.00 4.84
1075 1460 0.458716 GAGGAGGCGTTACAGAGCAC 60.459 60.000 0.00 0.00 34.54 4.40
1116 1504 2.734723 CGGCCGACAGACACACAG 60.735 66.667 24.07 0.00 0.00 3.66
1280 1668 4.680237 CACGCACGGCTCCTTCCA 62.680 66.667 0.00 0.00 0.00 3.53
1281 1669 3.706373 ACGCACGGCTCCTTCCAT 61.706 61.111 0.00 0.00 0.00 3.41
1282 1670 3.197790 CGCACGGCTCCTTCCATG 61.198 66.667 0.00 0.00 0.00 3.66
1283 1671 3.512516 GCACGGCTCCTTCCATGC 61.513 66.667 0.00 0.00 38.19 4.06
1284 1672 2.270205 CACGGCTCCTTCCATGCT 59.730 61.111 0.00 0.00 0.00 3.79
1434 1822 1.071471 CCTCCACAGCCTCAACGTT 59.929 57.895 0.00 0.00 0.00 3.99
1511 1899 4.194720 CGAGACGCCCTTCCTCGG 62.195 72.222 0.00 0.00 44.11 4.63
1572 1960 2.358737 GTCCACTCCAACGGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
1602 1990 0.742281 CCAAGTGCCTCTCCGACATG 60.742 60.000 0.00 0.00 0.00 3.21
1643 2031 3.437795 GTTCCTCGACTCCGGCGA 61.438 66.667 9.30 0.00 36.24 5.54
1672 2060 3.637273 AGGTCTGGCGGGTGTTCC 61.637 66.667 0.00 0.00 0.00 3.62
1748 2136 2.288666 GGAATTCAACGAGCTATGCCA 58.711 47.619 7.93 0.00 0.00 4.92
1752 2140 1.221840 CAACGAGCTATGCCAGGGT 59.778 57.895 0.00 0.00 0.00 4.34
1760 2151 1.072965 GCTATGCCAGGGTAAGATGCT 59.927 52.381 0.00 0.00 0.00 3.79
1761 2152 2.775890 CTATGCCAGGGTAAGATGCTG 58.224 52.381 0.00 0.00 0.00 4.41
1762 2153 0.466922 ATGCCAGGGTAAGATGCTGC 60.467 55.000 0.00 0.00 0.00 5.25
1779 2170 0.674581 TGCAGGCAAGGATCGTGAAG 60.675 55.000 0.00 0.00 0.00 3.02
1820 2211 3.103911 CGTGAAGGTGGTCGTCGC 61.104 66.667 0.00 0.00 0.00 5.19
1931 2325 2.239681 AGGAAGAAGGACTCGATGGT 57.760 50.000 0.00 0.00 0.00 3.55
1963 2357 0.304705 GGCGCCACATGATAAAGACG 59.695 55.000 24.80 0.00 0.00 4.18
1964 2358 0.304705 GCGCCACATGATAAAGACGG 59.695 55.000 0.00 0.00 0.00 4.79
1967 2361 1.949525 GCCACATGATAAAGACGGCAT 59.050 47.619 0.00 0.00 37.98 4.40
1995 2389 2.763215 GGTGACCATTGCCCTCCA 59.237 61.111 0.00 0.00 0.00 3.86
1997 2391 0.541764 GGTGACCATTGCCCTCCAAA 60.542 55.000 0.00 0.00 36.92 3.28
2000 2394 1.177401 GACCATTGCCCTCCAAAGAC 58.823 55.000 0.00 0.00 36.92 3.01
2001 2395 0.482446 ACCATTGCCCTCCAAAGACA 59.518 50.000 0.00 0.00 36.92 3.41
2002 2396 0.890683 CCATTGCCCTCCAAAGACAC 59.109 55.000 0.00 0.00 36.92 3.67
2003 2397 0.890683 CATTGCCCTCCAAAGACACC 59.109 55.000 0.00 0.00 36.92 4.16
2004 2398 0.609131 ATTGCCCTCCAAAGACACCG 60.609 55.000 0.00 0.00 36.92 4.94
2005 2399 2.359975 GCCCTCCAAAGACACCGG 60.360 66.667 0.00 0.00 0.00 5.28
2006 2400 2.890766 GCCCTCCAAAGACACCGGA 61.891 63.158 9.46 0.00 0.00 5.14
2007 2401 1.991230 CCCTCCAAAGACACCGGAT 59.009 57.895 9.46 0.00 0.00 4.18
2008 2402 0.328258 CCCTCCAAAGACACCGGATT 59.672 55.000 9.46 0.00 0.00 3.01
2009 2403 1.271926 CCCTCCAAAGACACCGGATTT 60.272 52.381 9.46 0.11 0.00 2.17
2010 2404 1.812571 CCTCCAAAGACACCGGATTTG 59.187 52.381 9.46 13.21 34.45 2.32
2011 2405 2.504367 CTCCAAAGACACCGGATTTGT 58.496 47.619 9.46 0.69 33.13 2.83
2012 2406 2.884639 CTCCAAAGACACCGGATTTGTT 59.115 45.455 9.46 0.00 33.13 2.83
2013 2407 2.621055 TCCAAAGACACCGGATTTGTTG 59.379 45.455 9.46 6.71 33.13 3.33
2014 2408 2.360801 CCAAAGACACCGGATTTGTTGT 59.639 45.455 9.46 0.00 33.13 3.32
2015 2409 3.550030 CCAAAGACACCGGATTTGTTGTC 60.550 47.826 9.46 10.84 33.13 3.18
2016 2410 1.508632 AGACACCGGATTTGTTGTCG 58.491 50.000 9.46 0.00 0.00 4.35
2017 2411 0.515564 GACACCGGATTTGTTGTCGG 59.484 55.000 9.46 0.00 46.95 4.79
2018 2412 1.209127 CACCGGATTTGTTGTCGGC 59.791 57.895 9.46 0.00 45.65 5.54
2019 2413 2.322081 ACCGGATTTGTTGTCGGCG 61.322 57.895 9.46 0.00 45.65 6.46
2043 2437 3.773117 CAACGGGTGCAACTGAATC 57.227 52.632 19.82 0.00 36.74 2.52
2044 2438 1.238439 CAACGGGTGCAACTGAATCT 58.762 50.000 19.82 0.00 36.74 2.40
2045 2439 1.608590 CAACGGGTGCAACTGAATCTT 59.391 47.619 19.82 0.00 36.74 2.40
2046 2440 1.981256 ACGGGTGCAACTGAATCTTT 58.019 45.000 19.82 0.00 36.74 2.52
2047 2441 3.134574 ACGGGTGCAACTGAATCTTTA 57.865 42.857 19.82 0.00 36.74 1.85
2048 2442 3.482436 ACGGGTGCAACTGAATCTTTAA 58.518 40.909 19.82 0.00 36.74 1.52
2049 2443 4.079253 ACGGGTGCAACTGAATCTTTAAT 58.921 39.130 19.82 0.00 36.74 1.40
2159 3168 9.527157 TTAGTTCAGGTTTTGATATGATTTGGA 57.473 29.630 0.00 0.00 35.27 3.53
2166 3175 9.082313 AGGTTTTGATATGATTTGGATATGGAC 57.918 33.333 0.00 0.00 0.00 4.02
2173 3182 5.464588 TGATTTGGATATGGACAGGGAAA 57.535 39.130 0.00 0.00 0.00 3.13
2249 3258 6.653020 ACTGAGTTATTAATGCAGGACATGA 58.347 36.000 0.00 0.00 39.60 3.07
2262 3271 7.649533 TGCAGGACATGATTTGATAAGATTT 57.350 32.000 0.00 0.00 0.00 2.17
2264 3273 9.187996 TGCAGGACATGATTTGATAAGATTTAA 57.812 29.630 0.00 0.00 0.00 1.52
2300 5095 9.624697 TGCAGAACATGATTTTTAAGTATCAAC 57.375 29.630 0.00 1.10 34.69 3.18
2337 5132 0.921256 AAACCATGGAGGGGAGGAGG 60.921 60.000 21.47 0.00 43.89 4.30
2357 5152 3.707102 AGGGGAACGAAACCAAATTTGAA 59.293 39.130 19.86 0.00 0.00 2.69
2390 5185 4.463891 ACAGCAAACTCCCCTTTGATAATG 59.536 41.667 0.00 0.00 33.61 1.90
2412 5207 8.905660 AATGGAGAAGATTAGATGATCTGTTG 57.094 34.615 4.96 0.00 36.53 3.33
2423 5218 2.371306 TGATCTGTTGCATCCATGGTG 58.629 47.619 12.58 10.59 0.00 4.17
2431 5226 0.889994 GCATCCATGGTGCAAGAACA 59.110 50.000 25.24 0.99 42.08 3.18
2432 5227 1.479323 GCATCCATGGTGCAAGAACAT 59.521 47.619 25.24 3.22 42.08 2.71
2433 5228 2.093869 GCATCCATGGTGCAAGAACATT 60.094 45.455 25.24 0.00 42.08 2.71
2502 7886 1.376609 ATTCAAACGAGATGGGCGCC 61.377 55.000 21.18 21.18 0.00 6.53
2540 7924 8.699283 ATACCTGTTCGACACTAATAAGAAAC 57.301 34.615 0.00 0.00 0.00 2.78
2661 8076 6.608808 AGCCAAGCTCATATAAAACCTCAAAT 59.391 34.615 0.00 0.00 30.62 2.32
2669 8084 9.408648 CTCATATAAAACCTCAAATACTTGGGT 57.591 33.333 0.00 0.00 37.57 4.51
2826 8885 2.158900 CCTTATGGAGTTGTCCTCGCAT 60.159 50.000 0.00 0.00 44.30 4.73
2841 8900 3.005554 CTCGCATGACAAATCCAAGACT 58.994 45.455 0.00 0.00 0.00 3.24
2872 8931 1.152819 CACATCAGCCATCCCAGGG 60.153 63.158 0.00 0.00 0.00 4.45
2919 8978 0.101939 CGGTAGAGGAAACCCTACGC 59.898 60.000 0.00 0.00 36.89 4.42
2925 8984 2.039879 AGAGGAAACCCTACGCAACAAT 59.960 45.455 0.00 0.00 33.25 2.71
2928 8987 2.095415 GGAAACCCTACGCAACAATCAC 60.095 50.000 0.00 0.00 0.00 3.06
2940 8999 4.311816 CAACAATCACAAGTTGCCTCTT 57.688 40.909 1.81 0.00 38.69 2.85
2945 9004 4.843220 ATCACAAGTTGCCTCTTCAAAG 57.157 40.909 1.81 0.00 0.00 2.77
2955 9014 1.068954 CCTCTTCAAAGCAACGCCTTC 60.069 52.381 0.00 0.00 0.00 3.46
3034 9407 2.390599 CCATCCGGACAGCGTTGTG 61.391 63.158 10.50 0.00 37.76 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.190528 AGAGATTCTAAAGGAGCCATGTTGA 59.809 40.000 0.00 0.00 0.00 3.18
1 2 5.435291 AGAGATTCTAAAGGAGCCATGTTG 58.565 41.667 0.00 0.00 0.00 3.33
2 3 5.707066 AGAGATTCTAAAGGAGCCATGTT 57.293 39.130 0.00 0.00 0.00 2.71
3 4 5.397334 GGAAGAGATTCTAAAGGAGCCATGT 60.397 44.000 0.00 0.00 0.00 3.21
4 5 5.062528 GGAAGAGATTCTAAAGGAGCCATG 58.937 45.833 0.00 0.00 0.00 3.66
5 6 4.103943 GGGAAGAGATTCTAAAGGAGCCAT 59.896 45.833 0.00 0.00 0.00 4.40
6 7 3.456277 GGGAAGAGATTCTAAAGGAGCCA 59.544 47.826 0.00 0.00 0.00 4.75
7 8 3.714280 AGGGAAGAGATTCTAAAGGAGCC 59.286 47.826 0.00 0.00 0.00 4.70
8 9 6.680148 ATAGGGAAGAGATTCTAAAGGAGC 57.320 41.667 0.00 0.00 0.00 4.70
9 10 8.256356 TGAATAGGGAAGAGATTCTAAAGGAG 57.744 38.462 0.00 0.00 32.01 3.69
10 11 8.805145 ATGAATAGGGAAGAGATTCTAAAGGA 57.195 34.615 0.00 0.00 32.01 3.36
11 12 8.654997 TGATGAATAGGGAAGAGATTCTAAAGG 58.345 37.037 0.00 0.00 32.01 3.11
12 13 9.487790 GTGATGAATAGGGAAGAGATTCTAAAG 57.512 37.037 0.00 0.00 32.01 1.85
13 14 8.432805 GGTGATGAATAGGGAAGAGATTCTAAA 58.567 37.037 0.00 0.00 32.01 1.85
14 15 7.791766 AGGTGATGAATAGGGAAGAGATTCTAA 59.208 37.037 0.00 0.00 32.01 2.10
15 16 7.309091 AGGTGATGAATAGGGAAGAGATTCTA 58.691 38.462 0.00 0.00 32.01 2.10
16 17 6.149616 AGGTGATGAATAGGGAAGAGATTCT 58.850 40.000 0.00 0.00 32.01 2.40
17 18 6.432403 AGGTGATGAATAGGGAAGAGATTC 57.568 41.667 0.00 0.00 0.00 2.52
18 19 6.388100 TGAAGGTGATGAATAGGGAAGAGATT 59.612 38.462 0.00 0.00 0.00 2.40
19 20 5.907662 TGAAGGTGATGAATAGGGAAGAGAT 59.092 40.000 0.00 0.00 0.00 2.75
20 21 5.280499 TGAAGGTGATGAATAGGGAAGAGA 58.720 41.667 0.00 0.00 0.00 3.10
21 22 5.620738 TGAAGGTGATGAATAGGGAAGAG 57.379 43.478 0.00 0.00 0.00 2.85
22 23 5.907662 AGATGAAGGTGATGAATAGGGAAGA 59.092 40.000 0.00 0.00 0.00 2.87
23 24 6.185114 AGATGAAGGTGATGAATAGGGAAG 57.815 41.667 0.00 0.00 0.00 3.46
24 25 6.581388 AAGATGAAGGTGATGAATAGGGAA 57.419 37.500 0.00 0.00 0.00 3.97
25 26 6.581388 AAAGATGAAGGTGATGAATAGGGA 57.419 37.500 0.00 0.00 0.00 4.20
26 27 6.460676 GCAAAAGATGAAGGTGATGAATAGGG 60.461 42.308 0.00 0.00 0.00 3.53
27 28 6.460676 GGCAAAAGATGAAGGTGATGAATAGG 60.461 42.308 0.00 0.00 0.00 2.57
28 29 6.095860 TGGCAAAAGATGAAGGTGATGAATAG 59.904 38.462 0.00 0.00 0.00 1.73
29 30 5.951148 TGGCAAAAGATGAAGGTGATGAATA 59.049 36.000 0.00 0.00 0.00 1.75
30 31 4.773674 TGGCAAAAGATGAAGGTGATGAAT 59.226 37.500 0.00 0.00 0.00 2.57
31 32 4.022068 GTGGCAAAAGATGAAGGTGATGAA 60.022 41.667 0.00 0.00 0.00 2.57
32 33 3.507233 GTGGCAAAAGATGAAGGTGATGA 59.493 43.478 0.00 0.00 0.00 2.92
33 34 3.256383 TGTGGCAAAAGATGAAGGTGATG 59.744 43.478 0.00 0.00 0.00 3.07
34 35 3.256631 GTGTGGCAAAAGATGAAGGTGAT 59.743 43.478 0.00 0.00 0.00 3.06
35 36 2.622942 GTGTGGCAAAAGATGAAGGTGA 59.377 45.455 0.00 0.00 0.00 4.02
36 37 2.605338 CGTGTGGCAAAAGATGAAGGTG 60.605 50.000 0.00 0.00 0.00 4.00
37 38 1.608590 CGTGTGGCAAAAGATGAAGGT 59.391 47.619 0.00 0.00 0.00 3.50
38 39 1.879380 TCGTGTGGCAAAAGATGAAGG 59.121 47.619 0.00 0.00 0.00 3.46
39 40 3.426695 GGATCGTGTGGCAAAAGATGAAG 60.427 47.826 10.96 0.00 0.00 3.02
40 41 2.487762 GGATCGTGTGGCAAAAGATGAA 59.512 45.455 10.96 0.00 0.00 2.57
41 42 2.083774 GGATCGTGTGGCAAAAGATGA 58.916 47.619 10.96 0.00 0.00 2.92
42 43 2.086869 AGGATCGTGTGGCAAAAGATG 58.913 47.619 10.96 0.00 0.00 2.90
43 44 2.496899 AGGATCGTGTGGCAAAAGAT 57.503 45.000 5.75 5.75 0.00 2.40
44 45 3.071479 GTTAGGATCGTGTGGCAAAAGA 58.929 45.455 0.00 0.00 0.00 2.52
45 46 2.161609 GGTTAGGATCGTGTGGCAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
46 47 2.156098 GGTTAGGATCGTGTGGCAAAA 58.844 47.619 0.00 0.00 0.00 2.44
47 48 1.072489 TGGTTAGGATCGTGTGGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
48 49 0.687920 TGGTTAGGATCGTGTGGCAA 59.312 50.000 0.00 0.00 0.00 4.52
49 50 0.687920 TTGGTTAGGATCGTGTGGCA 59.312 50.000 0.00 0.00 0.00 4.92
50 51 1.737793 CTTTGGTTAGGATCGTGTGGC 59.262 52.381 0.00 0.00 0.00 5.01
51 52 1.737793 GCTTTGGTTAGGATCGTGTGG 59.262 52.381 0.00 0.00 0.00 4.17
52 53 2.159627 GTGCTTTGGTTAGGATCGTGTG 59.840 50.000 0.00 0.00 0.00 3.82
53 54 2.038557 AGTGCTTTGGTTAGGATCGTGT 59.961 45.455 0.00 0.00 0.00 4.49
54 55 2.673368 GAGTGCTTTGGTTAGGATCGTG 59.327 50.000 0.00 0.00 0.00 4.35
55 56 2.674177 CGAGTGCTTTGGTTAGGATCGT 60.674 50.000 0.00 0.00 0.00 3.73
56 57 1.927174 CGAGTGCTTTGGTTAGGATCG 59.073 52.381 0.00 0.00 0.00 3.69
57 58 1.666189 GCGAGTGCTTTGGTTAGGATC 59.334 52.381 0.00 0.00 38.39 3.36
58 59 1.739067 GCGAGTGCTTTGGTTAGGAT 58.261 50.000 0.00 0.00 38.39 3.24
59 60 0.669318 CGCGAGTGCTTTGGTTAGGA 60.669 55.000 0.00 0.00 39.65 2.94
60 61 0.669318 TCGCGAGTGCTTTGGTTAGG 60.669 55.000 3.71 0.00 39.65 2.69
61 62 1.061131 CATCGCGAGTGCTTTGGTTAG 59.939 52.381 16.66 0.00 39.65 2.34
62 63 1.075542 CATCGCGAGTGCTTTGGTTA 58.924 50.000 16.66 0.00 39.65 2.85
63 64 0.884704 ACATCGCGAGTGCTTTGGTT 60.885 50.000 16.66 0.00 39.65 3.67
64 65 1.291877 GACATCGCGAGTGCTTTGGT 61.292 55.000 16.66 2.11 39.65 3.67
65 66 1.016130 AGACATCGCGAGTGCTTTGG 61.016 55.000 16.66 0.00 39.65 3.28
66 67 0.368227 GAGACATCGCGAGTGCTTTG 59.632 55.000 16.66 9.46 39.65 2.77
67 68 0.244994 AGAGACATCGCGAGTGCTTT 59.755 50.000 16.66 3.50 39.65 3.51
68 69 1.095600 TAGAGACATCGCGAGTGCTT 58.904 50.000 16.66 5.18 39.65 3.91
69 70 1.313772 ATAGAGACATCGCGAGTGCT 58.686 50.000 16.66 11.14 39.65 4.40
70 71 1.783711 CAATAGAGACATCGCGAGTGC 59.216 52.381 16.66 5.82 37.91 4.40
71 72 3.295785 CTCAATAGAGACATCGCGAGTG 58.704 50.000 16.66 15.22 44.98 3.51
72 73 2.292016 CCTCAATAGAGACATCGCGAGT 59.708 50.000 16.66 12.98 44.98 4.18
73 74 2.920227 GCCTCAATAGAGACATCGCGAG 60.920 54.545 16.66 9.51 44.98 5.03
74 75 1.001268 GCCTCAATAGAGACATCGCGA 60.001 52.381 13.09 13.09 44.98 5.87
75 76 1.269257 TGCCTCAATAGAGACATCGCG 60.269 52.381 0.00 0.00 44.98 5.87
76 77 2.223923 ACTGCCTCAATAGAGACATCGC 60.224 50.000 0.00 0.00 44.98 4.58
77 78 3.637432 GACTGCCTCAATAGAGACATCG 58.363 50.000 0.00 0.00 44.98 3.84
78 79 3.067461 ACGACTGCCTCAATAGAGACATC 59.933 47.826 0.00 0.00 44.98 3.06
79 80 3.027412 ACGACTGCCTCAATAGAGACAT 58.973 45.455 0.00 0.00 44.98 3.06
80 81 2.447443 ACGACTGCCTCAATAGAGACA 58.553 47.619 0.00 0.00 44.98 3.41
81 82 4.634184 TTACGACTGCCTCAATAGAGAC 57.366 45.455 0.00 0.00 44.98 3.36
82 83 5.451937 CCAATTACGACTGCCTCAATAGAGA 60.452 44.000 0.00 0.00 44.98 3.10
83 84 4.747108 CCAATTACGACTGCCTCAATAGAG 59.253 45.833 0.00 0.00 41.72 2.43
84 85 4.161565 ACCAATTACGACTGCCTCAATAGA 59.838 41.667 0.00 0.00 0.00 1.98
85 86 4.442706 ACCAATTACGACTGCCTCAATAG 58.557 43.478 0.00 0.00 0.00 1.73
86 87 4.481368 ACCAATTACGACTGCCTCAATA 57.519 40.909 0.00 0.00 0.00 1.90
87 88 3.350219 ACCAATTACGACTGCCTCAAT 57.650 42.857 0.00 0.00 0.00 2.57
88 89 2.851263 ACCAATTACGACTGCCTCAA 57.149 45.000 0.00 0.00 0.00 3.02
89 90 4.081365 TCAATACCAATTACGACTGCCTCA 60.081 41.667 0.00 0.00 0.00 3.86
90 91 4.439057 TCAATACCAATTACGACTGCCTC 58.561 43.478 0.00 0.00 0.00 4.70
91 92 4.481368 TCAATACCAATTACGACTGCCT 57.519 40.909 0.00 0.00 0.00 4.75
92 93 5.295787 TGATTCAATACCAATTACGACTGCC 59.704 40.000 0.00 0.00 0.00 4.85
93 94 6.358118 TGATTCAATACCAATTACGACTGC 57.642 37.500 0.00 0.00 0.00 4.40
94 95 7.747888 TGTTGATTCAATACCAATTACGACTG 58.252 34.615 1.78 0.00 0.00 3.51
95 96 7.915293 TGTTGATTCAATACCAATTACGACT 57.085 32.000 1.78 0.00 0.00 4.18
96 97 8.958175 TTTGTTGATTCAATACCAATTACGAC 57.042 30.769 1.78 0.00 0.00 4.34
102 103 9.328845 GGCATATTTTGTTGATTCAATACCAAT 57.671 29.630 1.78 4.20 0.00 3.16
103 104 8.538701 AGGCATATTTTGTTGATTCAATACCAA 58.461 29.630 1.78 0.00 0.00 3.67
104 105 7.980662 CAGGCATATTTTGTTGATTCAATACCA 59.019 33.333 1.78 0.00 0.00 3.25
105 106 7.042523 GCAGGCATATTTTGTTGATTCAATACC 60.043 37.037 1.78 0.00 0.00 2.73
106 107 7.042523 GGCAGGCATATTTTGTTGATTCAATAC 60.043 37.037 1.78 0.00 0.00 1.89
107 108 6.985645 GGCAGGCATATTTTGTTGATTCAATA 59.014 34.615 1.78 0.00 0.00 1.90
108 109 5.818857 GGCAGGCATATTTTGTTGATTCAAT 59.181 36.000 1.78 0.00 0.00 2.57
109 110 5.046448 AGGCAGGCATATTTTGTTGATTCAA 60.046 36.000 0.00 0.00 0.00 2.69
110 111 4.467082 AGGCAGGCATATTTTGTTGATTCA 59.533 37.500 0.00 0.00 0.00 2.57
111 112 5.014808 AGGCAGGCATATTTTGTTGATTC 57.985 39.130 0.00 0.00 0.00 2.52
112 113 4.141869 GGAGGCAGGCATATTTTGTTGATT 60.142 41.667 0.00 0.00 0.00 2.57
113 114 3.385755 GGAGGCAGGCATATTTTGTTGAT 59.614 43.478 0.00 0.00 0.00 2.57
114 115 2.760092 GGAGGCAGGCATATTTTGTTGA 59.240 45.455 0.00 0.00 0.00 3.18
115 116 2.496871 TGGAGGCAGGCATATTTTGTTG 59.503 45.455 0.00 0.00 0.00 3.33
116 117 2.818921 TGGAGGCAGGCATATTTTGTT 58.181 42.857 0.00 0.00 0.00 2.83
117 118 2.530460 TGGAGGCAGGCATATTTTGT 57.470 45.000 0.00 0.00 0.00 2.83
118 119 3.724374 CAATGGAGGCAGGCATATTTTG 58.276 45.455 0.00 0.00 0.00 2.44
119 120 2.103601 GCAATGGAGGCAGGCATATTTT 59.896 45.455 0.00 0.00 0.00 1.82
120 121 1.690352 GCAATGGAGGCAGGCATATTT 59.310 47.619 0.00 0.00 0.00 1.40
121 122 1.335145 GCAATGGAGGCAGGCATATT 58.665 50.000 0.00 0.00 0.00 1.28
122 123 0.186630 TGCAATGGAGGCAGGCATAT 59.813 50.000 0.00 0.00 36.11 1.78
123 124 0.033306 TTGCAATGGAGGCAGGCATA 60.033 50.000 0.00 0.00 43.05 3.14
124 125 1.305465 TTGCAATGGAGGCAGGCAT 60.305 52.632 0.00 0.00 43.05 4.40
125 126 2.117858 TTGCAATGGAGGCAGGCA 59.882 55.556 0.00 0.00 43.05 4.75
126 127 2.277591 TGTTGCAATGGAGGCAGGC 61.278 57.895 0.59 0.00 43.05 4.85
127 128 1.180456 TGTGTTGCAATGGAGGCAGG 61.180 55.000 0.59 0.00 43.05 4.85
128 129 0.038892 GTGTGTTGCAATGGAGGCAG 60.039 55.000 0.59 0.00 43.05 4.85
129 130 1.794151 CGTGTGTTGCAATGGAGGCA 61.794 55.000 0.59 0.00 40.00 4.75
130 131 1.081242 CGTGTGTTGCAATGGAGGC 60.081 57.895 0.59 0.00 0.00 4.70
131 132 0.888736 TCCGTGTGTTGCAATGGAGG 60.889 55.000 0.59 3.50 32.25 4.30
132 133 0.238289 GTCCGTGTGTTGCAATGGAG 59.762 55.000 0.59 0.00 35.41 3.86
133 134 0.464554 TGTCCGTGTGTTGCAATGGA 60.465 50.000 0.59 0.00 33.19 3.41
134 135 0.383590 TTGTCCGTGTGTTGCAATGG 59.616 50.000 0.59 0.00 0.00 3.16
135 136 2.420628 ATTGTCCGTGTGTTGCAATG 57.579 45.000 0.59 0.00 0.00 2.82
136 137 4.037446 ACTTAATTGTCCGTGTGTTGCAAT 59.963 37.500 0.59 0.00 0.00 3.56
137 138 3.378742 ACTTAATTGTCCGTGTGTTGCAA 59.621 39.130 0.00 0.00 0.00 4.08
138 139 2.946329 ACTTAATTGTCCGTGTGTTGCA 59.054 40.909 0.00 0.00 0.00 4.08
139 140 3.619233 ACTTAATTGTCCGTGTGTTGC 57.381 42.857 0.00 0.00 0.00 4.17
140 141 3.728718 GCAACTTAATTGTCCGTGTGTTG 59.271 43.478 0.00 0.00 40.77 3.33
141 142 3.630312 AGCAACTTAATTGTCCGTGTGTT 59.370 39.130 0.00 0.00 40.77 3.32
142 143 3.211045 AGCAACTTAATTGTCCGTGTGT 58.789 40.909 0.00 0.00 40.77 3.72
143 144 3.896648 AGCAACTTAATTGTCCGTGTG 57.103 42.857 0.00 0.00 40.77 3.82
144 145 7.675962 TTATTAGCAACTTAATTGTCCGTGT 57.324 32.000 0.00 0.00 40.77 4.49
173 174 9.661563 TTTTTGTTCGTCAACTATGGAGTATAT 57.338 29.630 0.00 0.00 33.58 0.86
175 176 7.972832 TTTTTGTTCGTCAACTATGGAGTAT 57.027 32.000 0.00 0.00 33.58 2.12
235 236 3.897239 TCTCAGCCCAAGAACAGAAAAA 58.103 40.909 0.00 0.00 0.00 1.94
236 237 3.576078 TCTCAGCCCAAGAACAGAAAA 57.424 42.857 0.00 0.00 0.00 2.29
237 238 3.795688 ATCTCAGCCCAAGAACAGAAA 57.204 42.857 0.00 0.00 0.00 2.52
238 239 3.795688 AATCTCAGCCCAAGAACAGAA 57.204 42.857 0.00 0.00 0.00 3.02
239 240 3.181440 ACAAATCTCAGCCCAAGAACAGA 60.181 43.478 0.00 0.00 0.00 3.41
240 241 3.152341 ACAAATCTCAGCCCAAGAACAG 58.848 45.455 0.00 0.00 0.00 3.16
241 242 3.228188 ACAAATCTCAGCCCAAGAACA 57.772 42.857 0.00 0.00 0.00 3.18
242 243 4.590850 AAACAAATCTCAGCCCAAGAAC 57.409 40.909 0.00 0.00 0.00 3.01
243 244 5.278957 GCTAAAACAAATCTCAGCCCAAGAA 60.279 40.000 0.00 0.00 0.00 2.52
244 245 4.218417 GCTAAAACAAATCTCAGCCCAAGA 59.782 41.667 0.00 0.00 0.00 3.02
245 246 4.219288 AGCTAAAACAAATCTCAGCCCAAG 59.781 41.667 0.00 0.00 0.00 3.61
246 247 4.151883 AGCTAAAACAAATCTCAGCCCAA 58.848 39.130 0.00 0.00 0.00 4.12
247 248 3.766545 AGCTAAAACAAATCTCAGCCCA 58.233 40.909 0.00 0.00 0.00 5.36
248 249 4.790765 AAGCTAAAACAAATCTCAGCCC 57.209 40.909 0.00 0.00 0.00 5.19
249 250 6.254281 TGTAAGCTAAAACAAATCTCAGCC 57.746 37.500 0.00 0.00 0.00 4.85
250 251 7.114953 GGTTTGTAAGCTAAAACAAATCTCAGC 59.885 37.037 19.05 9.42 44.73 4.26
251 252 8.134895 TGGTTTGTAAGCTAAAACAAATCTCAG 58.865 33.333 22.69 0.00 44.73 3.35
252 253 8.001881 TGGTTTGTAAGCTAAAACAAATCTCA 57.998 30.769 22.69 17.45 44.73 3.27
253 254 9.476202 AATGGTTTGTAAGCTAAAACAAATCTC 57.524 29.630 22.69 15.99 44.73 2.75
292 293 9.773328 CGTGTTCACAATGAATCTGTAAAATAT 57.227 29.630 3.87 0.00 38.79 1.28
293 294 7.748683 GCGTGTTCACAATGAATCTGTAAAATA 59.251 33.333 3.87 0.00 38.79 1.40
294 295 6.582295 GCGTGTTCACAATGAATCTGTAAAAT 59.418 34.615 3.87 0.00 38.79 1.82
295 296 5.912396 GCGTGTTCACAATGAATCTGTAAAA 59.088 36.000 3.87 0.00 38.79 1.52
296 297 5.008118 TGCGTGTTCACAATGAATCTGTAAA 59.992 36.000 3.87 0.00 38.79 2.01
297 298 4.513318 TGCGTGTTCACAATGAATCTGTAA 59.487 37.500 3.87 0.00 38.79 2.41
298 299 4.061596 TGCGTGTTCACAATGAATCTGTA 58.938 39.130 3.87 0.00 38.79 2.74
299 300 2.877786 TGCGTGTTCACAATGAATCTGT 59.122 40.909 3.87 0.00 38.79 3.41
300 301 3.228749 GTGCGTGTTCACAATGAATCTG 58.771 45.455 3.87 0.00 38.79 2.90
301 302 2.877786 TGTGCGTGTTCACAATGAATCT 59.122 40.909 3.87 0.00 43.27 2.40
302 303 3.266541 TGTGCGTGTTCACAATGAATC 57.733 42.857 3.87 0.00 43.27 2.52
309 310 1.663643 GAGAACTTGTGCGTGTTCACA 59.336 47.619 8.28 0.00 43.38 3.58
310 311 1.663643 TGAGAACTTGTGCGTGTTCAC 59.336 47.619 8.28 3.22 43.38 3.18
311 312 1.663643 GTGAGAACTTGTGCGTGTTCA 59.336 47.619 8.28 0.00 43.38 3.18
312 313 1.663643 TGTGAGAACTTGTGCGTGTTC 59.336 47.619 0.00 0.00 41.84 3.18
313 314 1.732941 TGTGAGAACTTGTGCGTGTT 58.267 45.000 0.00 0.00 0.00 3.32
314 315 1.732941 TTGTGAGAACTTGTGCGTGT 58.267 45.000 0.00 0.00 0.00 4.49
315 316 3.338818 AATTGTGAGAACTTGTGCGTG 57.661 42.857 0.00 0.00 0.00 5.34
316 317 4.370364 AAAATTGTGAGAACTTGTGCGT 57.630 36.364 0.00 0.00 0.00 5.24
406 407 8.915654 CGTGGGAAGAAAAATAAAAGATGAAAG 58.084 33.333 0.00 0.00 0.00 2.62
411 412 7.147897 GGGATCGTGGGAAGAAAAATAAAAGAT 60.148 37.037 0.00 0.00 0.00 2.40
424 425 1.679032 GGACAAAGGGATCGTGGGAAG 60.679 57.143 0.00 0.00 0.00 3.46
440 441 4.610605 TTACGAAATGACTCCTTGGACA 57.389 40.909 0.00 0.00 0.00 4.02
447 448 5.525378 AGCTGATTGATTACGAAATGACTCC 59.475 40.000 0.00 0.00 0.00 3.85
449 450 6.992063 AAGCTGATTGATTACGAAATGACT 57.008 33.333 0.00 0.00 0.00 3.41
450 451 9.722056 AATTAAGCTGATTGATTACGAAATGAC 57.278 29.630 0.00 0.00 0.00 3.06
469 471 9.855021 TTTGCTCAGAAGGTAAATAAATTAAGC 57.145 29.630 0.00 0.00 0.00 3.09
518 521 6.090763 CGCCTCGTTGCAATGAGATATAAATA 59.909 38.462 38.51 9.27 43.22 1.40
530 533 1.308069 AATGCTCGCCTCGTTGCAAT 61.308 50.000 0.59 3.82 39.44 3.56
536 539 0.320771 AAAGACAATGCTCGCCTCGT 60.321 50.000 0.00 0.00 0.00 4.18
537 540 1.324736 GTAAAGACAATGCTCGCCTCG 59.675 52.381 0.00 0.00 0.00 4.63
538 541 2.622436 AGTAAAGACAATGCTCGCCTC 58.378 47.619 0.00 0.00 0.00 4.70
539 542 2.770164 AGTAAAGACAATGCTCGCCT 57.230 45.000 0.00 0.00 0.00 5.52
540 543 3.831715 AAAGTAAAGACAATGCTCGCC 57.168 42.857 0.00 0.00 0.00 5.54
631 634 3.583086 GATTTAGCACGGGCCCGC 61.583 66.667 43.58 28.52 44.19 6.13
637 640 1.154205 CCCAGCTCGATTTAGCACGG 61.154 60.000 0.00 0.00 45.30 4.94
638 641 1.154205 CCCCAGCTCGATTTAGCACG 61.154 60.000 0.00 0.00 45.30 5.34
640 643 1.153168 GCCCCAGCTCGATTTAGCA 60.153 57.895 0.00 0.00 45.30 3.49
649 652 2.111878 ATGCATACGCCCCAGCTC 59.888 61.111 0.00 0.00 37.32 4.09
669 1031 7.852454 GTGTTAAACGAAAATTACGGAAAGAGT 59.148 33.333 9.19 0.00 34.93 3.24
753 1126 6.754675 GTGTTAGGTTTTAAGAAGCTTGCAAA 59.245 34.615 2.10 0.00 0.00 3.68
754 1127 6.270064 GTGTTAGGTTTTAAGAAGCTTGCAA 58.730 36.000 2.10 0.00 0.00 4.08
755 1128 5.221165 GGTGTTAGGTTTTAAGAAGCTTGCA 60.221 40.000 2.10 0.00 0.00 4.08
756 1129 5.220381 GGTGTTAGGTTTTAAGAAGCTTGC 58.780 41.667 2.10 0.00 0.00 4.01
757 1130 5.449304 CGGTGTTAGGTTTTAAGAAGCTTG 58.551 41.667 2.10 0.00 0.00 4.01
799 1173 1.859703 CTATAGTCGTCGTCGTCTGCT 59.140 52.381 11.35 4.79 36.86 4.24
841 1226 4.318831 CCATAATCGGCGCTTAAAGTCTTC 60.319 45.833 7.64 0.00 0.00 2.87
860 1245 0.174845 CGAAGGTTGAGGCGACCATA 59.825 55.000 6.61 0.00 40.26 2.74
1075 1460 0.038159 GTTGACAGGGTCGAGGACAG 60.038 60.000 0.00 0.00 34.95 3.51
1080 1465 4.554163 GACGTTGACAGGGTCGAG 57.446 61.111 0.00 0.00 34.95 4.04
1098 1486 4.961511 TGTGTGTCTGTCGGCCGC 62.962 66.667 23.51 16.75 0.00 6.53
1524 1912 3.139118 GATTTCCGCCGCGAAGTCG 62.139 63.158 15.93 5.30 43.27 4.18
1602 1990 4.933064 CCGATGAGCGCCTCGACC 62.933 72.222 21.65 0.00 37.05 4.79
1643 2031 1.007271 CAGACCTGCTCGTTGTCGT 60.007 57.895 0.00 0.00 38.33 4.34
1748 2136 1.225704 GCCTGCAGCATCTTACCCT 59.774 57.895 8.66 0.00 42.97 4.34
1760 2151 0.674581 CTTCACGATCCTTGCCTGCA 60.675 55.000 0.00 0.00 0.00 4.41
1761 2152 0.391661 TCTTCACGATCCTTGCCTGC 60.392 55.000 0.00 0.00 0.00 4.85
1762 2153 2.099141 TTCTTCACGATCCTTGCCTG 57.901 50.000 0.00 0.00 0.00 4.85
1767 2158 3.307059 CCCAGTCTTTCTTCACGATCCTT 60.307 47.826 0.00 0.00 0.00 3.36
1769 2160 2.622436 CCCAGTCTTTCTTCACGATCC 58.378 52.381 0.00 0.00 0.00 3.36
1779 2170 2.560954 GCTCTTGGCCCAGTCTTTC 58.439 57.895 0.00 0.00 34.27 2.62
1995 2389 2.289547 CGACAACAAATCCGGTGTCTTT 59.710 45.455 15.99 4.24 0.00 2.52
1997 2391 1.508632 CGACAACAAATCCGGTGTCT 58.491 50.000 15.99 0.00 0.00 3.41
2000 2394 1.209127 GCCGACAACAAATCCGGTG 59.791 57.895 0.00 0.00 43.51 4.94
2001 2395 2.322081 CGCCGACAACAAATCCGGT 61.322 57.895 0.00 0.00 43.51 5.28
2002 2396 1.366111 ATCGCCGACAACAAATCCGG 61.366 55.000 0.00 0.00 44.34 5.14
2003 2397 0.247655 CATCGCCGACAACAAATCCG 60.248 55.000 0.00 0.00 0.00 4.18
2004 2398 1.062587 CTCATCGCCGACAACAAATCC 59.937 52.381 0.00 0.00 0.00 3.01
2005 2399 1.529826 GCTCATCGCCGACAACAAATC 60.530 52.381 0.00 0.00 0.00 2.17
2006 2400 0.447801 GCTCATCGCCGACAACAAAT 59.552 50.000 0.00 0.00 0.00 2.32
2007 2401 0.882484 TGCTCATCGCCGACAACAAA 60.882 50.000 0.00 0.00 38.05 2.83
2008 2402 0.882484 TTGCTCATCGCCGACAACAA 60.882 50.000 0.00 0.00 38.05 2.83
2009 2403 1.301322 TTGCTCATCGCCGACAACA 60.301 52.632 0.00 0.00 38.05 3.33
2010 2404 1.132640 GTTGCTCATCGCCGACAAC 59.867 57.895 3.11 3.11 38.05 3.32
2011 2405 2.379634 CGTTGCTCATCGCCGACAA 61.380 57.895 0.00 0.00 38.05 3.18
2012 2406 2.809174 CGTTGCTCATCGCCGACA 60.809 61.111 0.00 0.00 38.05 4.35
2013 2407 3.554692 CCGTTGCTCATCGCCGAC 61.555 66.667 0.00 0.00 38.05 4.79
2014 2408 4.812476 CCCGTTGCTCATCGCCGA 62.812 66.667 0.00 0.00 38.05 5.54
2016 2410 3.499737 CACCCGTTGCTCATCGCC 61.500 66.667 0.00 0.00 38.05 5.54
2027 2421 1.981256 AAAGATTCAGTTGCACCCGT 58.019 45.000 0.00 0.00 0.00 5.28
2029 2423 5.572896 CGAAATTAAAGATTCAGTTGCACCC 59.427 40.000 0.00 0.00 0.00 4.61
2047 2441 9.424319 GGTAGATGTCATGTATATGTCGAAATT 57.576 33.333 0.00 0.00 35.73 1.82
2048 2442 8.585018 TGGTAGATGTCATGTATATGTCGAAAT 58.415 33.333 0.00 0.00 35.73 2.17
2049 2443 7.947282 TGGTAGATGTCATGTATATGTCGAAA 58.053 34.615 0.00 0.00 35.73 3.46
2159 3168 5.796502 TTCCTTTCTTTCCCTGTCCATAT 57.203 39.130 0.00 0.00 0.00 1.78
2166 3175 5.852282 TCAAACTTTCCTTTCTTTCCCTG 57.148 39.130 0.00 0.00 0.00 4.45
2226 3235 7.741027 ATCATGTCCTGCATTAATAACTCAG 57.259 36.000 0.00 0.00 35.19 3.35
2264 3273 9.715121 AAAAATCATGTTCTGCATTAACTCAAT 57.285 25.926 11.92 2.48 35.19 2.57
2308 5103 5.674496 TCCCCTCCATGGTTTAGAATAATCA 59.326 40.000 12.58 0.00 0.00 2.57
2313 5108 2.785857 CCTCCCCTCCATGGTTTAGAAT 59.214 50.000 12.58 0.00 0.00 2.40
2317 5112 1.628043 CCTCCTCCCCTCCATGGTTTA 60.628 57.143 12.58 0.00 0.00 2.01
2337 5132 4.743151 GTCTTCAAATTTGGTTTCGTTCCC 59.257 41.667 17.90 0.00 0.00 3.97
2357 5152 2.354821 GGAGTTTGCTGTTTGAACGTCT 59.645 45.455 0.00 0.00 0.00 4.18
2372 5167 5.796502 TCTCCATTATCAAAGGGGAGTTT 57.203 39.130 0.00 0.00 44.33 2.66
2390 5185 6.286758 TGCAACAGATCATCTAATCTTCTCC 58.713 40.000 0.00 0.00 33.68 3.71
2412 5207 0.889994 TGTTCTTGCACCATGGATGC 59.110 50.000 21.47 23.17 43.68 3.91
2473 7857 6.294508 CCCATCTCGTTTGAATTGGTTTTACT 60.295 38.462 0.00 0.00 0.00 2.24
2502 7886 6.648725 GTCGAACAGGTATAGGGTACTACTAG 59.351 46.154 0.00 0.00 30.59 2.57
2540 7924 4.451096 GGCAAGGATATACACATACAACGG 59.549 45.833 0.00 0.00 0.00 4.44
2669 8084 0.820871 GTGTTTGTGGTGGGCTTCAA 59.179 50.000 0.00 0.00 0.00 2.69
2680 8095 4.014847 ACGTCTCATGTTTGTGTTTGTG 57.985 40.909 0.00 0.00 0.00 3.33
2807 8222 2.499693 TCATGCGAGGACAACTCCATAA 59.500 45.455 0.00 0.00 43.57 1.90
2808 8223 2.107366 TCATGCGAGGACAACTCCATA 58.893 47.619 0.00 0.00 43.57 2.74
2826 8885 1.202758 ACGGCAGTCTTGGATTTGTCA 60.203 47.619 0.00 0.00 0.00 3.58
2872 8931 1.735559 GTGGACGTCAGGGTAACGC 60.736 63.158 18.91 0.45 43.76 4.84
2881 8940 0.317160 GTCATGGTCAGTGGACGTCA 59.683 55.000 18.91 0.27 45.28 4.35
2940 8999 1.674359 TCTTGAAGGCGTTGCTTTGA 58.326 45.000 0.00 0.00 0.00 2.69
2945 9004 0.238553 GACCTTCTTGAAGGCGTTGC 59.761 55.000 24.58 9.27 43.80 4.17
2955 9014 2.218759 CGTCTTTGTCGTGACCTTCTTG 59.781 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.