Multiple sequence alignment - TraesCS2D01G479000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G479000 chr2D 100.000 4857 0 0 1 4857 580008547 580003691 0.000000e+00 8970.0
1 TraesCS2D01G479000 chr2D 82.963 270 37 7 510 772 480178939 480179206 8.130000e-58 235.0
2 TraesCS2D01G479000 chr2D 81.784 269 40 7 504 766 391810091 391810356 2.940000e-52 217.0
3 TraesCS2D01G479000 chr2D 80.000 290 49 3 1374 1655 579996160 579995872 6.370000e-49 206.0
4 TraesCS2D01G479000 chr2D 80.000 170 30 4 4685 4852 561935308 561935141 6.600000e-24 122.0
5 TraesCS2D01G479000 chr2B 97.462 1891 44 3 2048 3938 698953843 698951957 0.000000e+00 3223.0
6 TraesCS2D01G479000 chr2B 96.670 1892 56 6 2048 3938 698305588 698303703 0.000000e+00 3138.0
7 TraesCS2D01G479000 chr2B 88.213 1612 109 26 464 2049 698955451 698953895 0.000000e+00 1849.0
8 TraesCS2D01G479000 chr2B 92.441 1270 34 11 799 2049 698306866 698305640 0.000000e+00 1757.0
9 TraesCS2D01G479000 chr2B 93.704 540 27 3 4321 4857 698303320 698302785 0.000000e+00 802.0
10 TraesCS2D01G479000 chr2B 94.783 230 12 0 4013 4242 698951566 698951337 4.620000e-95 359.0
11 TraesCS2D01G479000 chr2B 85.859 297 25 10 29 310 698959764 698959470 2.840000e-77 300.0
12 TraesCS2D01G479000 chr2B 82.443 262 40 3 515 770 742643150 742642889 1.760000e-54 224.0
13 TraesCS2D01G479000 chr2B 82.331 266 38 6 509 768 217802482 217802220 6.330000e-54 222.0
14 TraesCS2D01G479000 chr2B 82.129 263 40 4 511 767 755065450 755065711 8.180000e-53 219.0
15 TraesCS2D01G479000 chr2B 80.496 282 49 3 1379 1655 698296373 698296093 1.370000e-50 211.0
16 TraesCS2D01G479000 chr2B 94.697 132 6 1 3953 4084 698303719 698303589 2.290000e-48 204.0
17 TraesCS2D01G479000 chr2B 96.907 97 3 0 4053 4149 698303589 698303493 3.890000e-36 163.0
18 TraesCS2D01G479000 chr2B 95.522 67 3 0 3953 4019 698951973 698951907 1.850000e-19 108.0
19 TraesCS2D01G479000 chr2B 78.107 169 35 2 4685 4852 671213657 671213490 6.650000e-19 106.0
20 TraesCS2D01G479000 chr2A 96.019 1482 39 9 2428 3901 717881071 717879602 0.000000e+00 2392.0
21 TraesCS2D01G479000 chr2A 94.663 1499 36 17 940 2430 717882636 717881174 0.000000e+00 2285.0
22 TraesCS2D01G479000 chr2A 90.120 749 50 15 4125 4857 717879007 717878267 0.000000e+00 952.0
23 TraesCS2D01G479000 chr2A 90.685 569 25 12 791 1331 717882811 717882243 0.000000e+00 732.0
24 TraesCS2D01G479000 chr2A 95.294 170 7 1 3953 4121 717879341 717879172 8.010000e-68 268.0
25 TraesCS2D01G479000 chr2A 79.882 169 32 2 4685 4852 702194070 702193903 6.600000e-24 122.0
26 TraesCS2D01G479000 chr2A 94.737 57 3 0 4784 4840 702246232 702246176 6.700000e-14 89.8
27 TraesCS2D01G479000 chr3A 82.707 266 37 7 510 768 725919295 725919032 1.360000e-55 228.0
28 TraesCS2D01G479000 chr6D 82.090 268 40 7 507 767 402567275 402567009 6.330000e-54 222.0
29 TraesCS2D01G479000 chr7B 82.090 268 38 7 510 769 16149264 16149529 2.280000e-53 220.0
30 TraesCS2D01G479000 chr5A 82.090 268 37 8 506 765 557095659 557095923 8.180000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G479000 chr2D 580003691 580008547 4856 True 8970.00 8970 100.0000 1 4857 1 chr2D.!!$R3 4856
1 TraesCS2D01G479000 chr2B 698951337 698955451 4114 True 1384.75 3223 93.9950 464 4242 4 chr2B.!!$R7 3778
2 TraesCS2D01G479000 chr2B 698302785 698306866 4081 True 1212.80 3138 94.8838 799 4857 5 chr2B.!!$R6 4058
3 TraesCS2D01G479000 chr2A 717878267 717882811 4544 True 1325.80 2392 93.3562 791 4857 5 chr2A.!!$R3 4066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.038251 TGACGACTAGTTGGCTGCTG 60.038 55.0 17.20 0.00 0.00 4.41 F
695 706 0.110509 GCGACAAGTGACACATGCAG 60.111 55.0 10.62 6.29 0.00 4.41 F
1321 1386 0.034616 CCAAGCCATCTCGATCCCTC 59.965 60.0 0.00 0.00 0.00 4.30 F
1525 1599 0.673985 TCTCGGTGAAGGTGACACAG 59.326 55.0 8.08 0.00 39.65 3.66 F
2627 2871 0.537188 ATGGAGTGAGGCGTAACCAG 59.463 55.0 0.00 0.00 43.14 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1238 0.101399 CCTCCTCATCCTCACGTTCG 59.899 60.000 0.00 0.00 0.00 3.95 R
2609 2853 0.541063 TCTGGTTACGCCTCACTCCA 60.541 55.000 0.00 0.00 38.35 3.86 R
2616 2860 0.756903 ACTTGTGTCTGGTTACGCCT 59.243 50.000 0.00 0.00 38.35 5.52 R
3517 3764 1.197721 GATCCCTCAACAACTTGCACG 59.802 52.381 0.00 0.00 0.00 5.34 R
4242 5276 0.179197 CACGCTTGATGCTGCAAGAG 60.179 55.000 18.96 17.74 46.31 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.534721 GCCTCGGCTAGAACTTTGT 57.465 52.632 0.00 0.00 38.26 2.83
26 27 1.809684 GCCTCGGCTAGAACTTTGTT 58.190 50.000 0.00 0.00 38.26 2.83
27 28 1.464997 GCCTCGGCTAGAACTTTGTTG 59.535 52.381 0.00 0.00 38.26 3.33
28 29 2.767505 CCTCGGCTAGAACTTTGTTGT 58.232 47.619 0.00 0.00 0.00 3.32
29 30 2.737252 CCTCGGCTAGAACTTTGTTGTC 59.263 50.000 0.00 0.00 0.00 3.18
30 31 3.555168 CCTCGGCTAGAACTTTGTTGTCT 60.555 47.826 0.00 0.00 0.00 3.41
31 32 3.650139 TCGGCTAGAACTTTGTTGTCTC 58.350 45.455 0.00 0.00 0.00 3.36
32 33 3.069016 TCGGCTAGAACTTTGTTGTCTCA 59.931 43.478 0.00 0.00 0.00 3.27
33 34 3.997021 CGGCTAGAACTTTGTTGTCTCAT 59.003 43.478 0.00 0.00 0.00 2.90
34 35 5.047590 TCGGCTAGAACTTTGTTGTCTCATA 60.048 40.000 0.00 0.00 0.00 2.15
35 36 5.812642 CGGCTAGAACTTTGTTGTCTCATAT 59.187 40.000 0.00 0.00 0.00 1.78
36 37 6.313905 CGGCTAGAACTTTGTTGTCTCATATT 59.686 38.462 0.00 0.00 0.00 1.28
37 38 7.464710 CGGCTAGAACTTTGTTGTCTCATATTC 60.465 40.741 0.00 0.00 0.00 1.75
38 39 7.550906 GGCTAGAACTTTGTTGTCTCATATTCT 59.449 37.037 0.00 0.00 0.00 2.40
39 40 8.599774 GCTAGAACTTTGTTGTCTCATATTCTC 58.400 37.037 0.00 0.00 0.00 2.87
40 41 7.913674 AGAACTTTGTTGTCTCATATTCTCC 57.086 36.000 0.00 0.00 0.00 3.71
41 42 7.684529 AGAACTTTGTTGTCTCATATTCTCCT 58.315 34.615 0.00 0.00 0.00 3.69
42 43 7.821846 AGAACTTTGTTGTCTCATATTCTCCTC 59.178 37.037 0.00 0.00 0.00 3.71
43 44 6.410540 ACTTTGTTGTCTCATATTCTCCTCC 58.589 40.000 0.00 0.00 0.00 4.30
44 45 6.214412 ACTTTGTTGTCTCATATTCTCCTCCT 59.786 38.462 0.00 0.00 0.00 3.69
45 46 6.627087 TTGTTGTCTCATATTCTCCTCCTT 57.373 37.500 0.00 0.00 0.00 3.36
46 47 7.733773 TTGTTGTCTCATATTCTCCTCCTTA 57.266 36.000 0.00 0.00 0.00 2.69
47 48 7.733773 TGTTGTCTCATATTCTCCTCCTTAA 57.266 36.000 0.00 0.00 0.00 1.85
48 49 8.324191 TGTTGTCTCATATTCTCCTCCTTAAT 57.676 34.615 0.00 0.00 0.00 1.40
49 50 8.772250 TGTTGTCTCATATTCTCCTCCTTAATT 58.228 33.333 0.00 0.00 0.00 1.40
58 59 6.753107 TTCTCCTCCTTAATTAAAAAGCCG 57.247 37.500 0.00 0.00 0.00 5.52
59 60 4.638865 TCTCCTCCTTAATTAAAAAGCCGC 59.361 41.667 0.00 0.00 0.00 6.53
60 61 4.337145 TCCTCCTTAATTAAAAAGCCGCA 58.663 39.130 0.00 0.00 0.00 5.69
61 62 4.398044 TCCTCCTTAATTAAAAAGCCGCAG 59.602 41.667 0.00 0.00 0.00 5.18
93 94 5.037383 CCCCCTATTGGTCTAGTTTTCTC 57.963 47.826 0.00 0.00 0.00 2.87
94 95 4.141459 CCCCCTATTGGTCTAGTTTTCTCC 60.141 50.000 0.00 0.00 0.00 3.71
95 96 4.443034 CCCCTATTGGTCTAGTTTTCTCCG 60.443 50.000 0.00 0.00 0.00 4.63
96 97 4.161754 CCCTATTGGTCTAGTTTTCTCCGT 59.838 45.833 0.00 0.00 0.00 4.69
97 98 5.338137 CCCTATTGGTCTAGTTTTCTCCGTT 60.338 44.000 0.00 0.00 0.00 4.44
98 99 6.171213 CCTATTGGTCTAGTTTTCTCCGTTT 58.829 40.000 0.00 0.00 0.00 3.60
99 100 5.941948 ATTGGTCTAGTTTTCTCCGTTTG 57.058 39.130 0.00 0.00 0.00 2.93
100 101 3.135994 TGGTCTAGTTTTCTCCGTTTGC 58.864 45.455 0.00 0.00 0.00 3.68
101 102 3.135994 GGTCTAGTTTTCTCCGTTTGCA 58.864 45.455 0.00 0.00 0.00 4.08
102 103 3.059120 GGTCTAGTTTTCTCCGTTTGCAC 60.059 47.826 0.00 0.00 0.00 4.57
103 104 3.808174 GTCTAGTTTTCTCCGTTTGCACT 59.192 43.478 0.00 0.00 0.00 4.40
104 105 4.986659 GTCTAGTTTTCTCCGTTTGCACTA 59.013 41.667 0.00 0.00 0.00 2.74
105 106 5.638234 GTCTAGTTTTCTCCGTTTGCACTAT 59.362 40.000 0.00 0.00 0.00 2.12
106 107 6.810182 GTCTAGTTTTCTCCGTTTGCACTATA 59.190 38.462 0.00 0.00 0.00 1.31
107 108 7.491696 GTCTAGTTTTCTCCGTTTGCACTATAT 59.508 37.037 0.00 0.00 0.00 0.86
108 109 8.689061 TCTAGTTTTCTCCGTTTGCACTATATA 58.311 33.333 0.00 0.00 0.00 0.86
109 110 9.477484 CTAGTTTTCTCCGTTTGCACTATATAT 57.523 33.333 0.00 0.00 0.00 0.86
110 111 8.366671 AGTTTTCTCCGTTTGCACTATATATC 57.633 34.615 0.00 0.00 0.00 1.63
111 112 7.985184 AGTTTTCTCCGTTTGCACTATATATCA 59.015 33.333 0.00 0.00 0.00 2.15
112 113 8.774586 GTTTTCTCCGTTTGCACTATATATCAT 58.225 33.333 0.00 0.00 0.00 2.45
113 114 8.534333 TTTCTCCGTTTGCACTATATATCATC 57.466 34.615 0.00 0.00 0.00 2.92
114 115 7.227049 TCTCCGTTTGCACTATATATCATCA 57.773 36.000 0.00 0.00 0.00 3.07
115 116 7.666623 TCTCCGTTTGCACTATATATCATCAA 58.333 34.615 0.00 0.00 0.00 2.57
116 117 7.814587 TCTCCGTTTGCACTATATATCATCAAG 59.185 37.037 0.00 0.00 0.00 3.02
117 118 6.873605 TCCGTTTGCACTATATATCATCAAGG 59.126 38.462 0.00 0.00 0.00 3.61
118 119 6.650807 CCGTTTGCACTATATATCATCAAGGT 59.349 38.462 0.00 0.00 0.00 3.50
119 120 7.173218 CCGTTTGCACTATATATCATCAAGGTT 59.827 37.037 0.00 0.00 0.00 3.50
120 121 8.559536 CGTTTGCACTATATATCATCAAGGTTT 58.440 33.333 0.00 0.00 0.00 3.27
134 135 8.110860 TCATCAAGGTTTTACATTCTTTCTCC 57.889 34.615 0.00 0.00 0.00 3.71
135 136 6.554334 TCAAGGTTTTACATTCTTTCTCCG 57.446 37.500 0.00 0.00 0.00 4.63
136 137 6.292923 TCAAGGTTTTACATTCTTTCTCCGA 58.707 36.000 0.00 0.00 0.00 4.55
137 138 6.768861 TCAAGGTTTTACATTCTTTCTCCGAA 59.231 34.615 0.00 0.00 0.00 4.30
138 139 6.803154 AGGTTTTACATTCTTTCTCCGAAG 57.197 37.500 0.00 0.00 0.00 3.79
139 140 6.531021 AGGTTTTACATTCTTTCTCCGAAGA 58.469 36.000 0.00 0.00 34.00 2.87
140 141 6.996282 AGGTTTTACATTCTTTCTCCGAAGAA 59.004 34.615 2.91 2.91 46.36 2.52
141 142 7.041303 AGGTTTTACATTCTTTCTCCGAAGAAC 60.041 37.037 2.51 0.00 45.46 3.01
142 143 7.255001 GGTTTTACATTCTTTCTCCGAAGAACA 60.255 37.037 2.51 0.00 45.46 3.18
143 144 7.795482 TTTACATTCTTTCTCCGAAGAACAA 57.205 32.000 2.51 0.00 45.46 2.83
144 145 5.931441 ACATTCTTTCTCCGAAGAACAAG 57.069 39.130 2.51 0.00 45.46 3.16
145 146 5.368989 ACATTCTTTCTCCGAAGAACAAGT 58.631 37.500 2.51 0.77 45.46 3.16
146 147 6.522054 ACATTCTTTCTCCGAAGAACAAGTA 58.478 36.000 2.51 0.00 45.46 2.24
147 148 6.647067 ACATTCTTTCTCCGAAGAACAAGTAG 59.353 38.462 2.51 0.00 45.46 2.57
148 149 5.786264 TCTTTCTCCGAAGAACAAGTAGT 57.214 39.130 0.00 0.00 41.23 2.73
149 150 6.158023 TCTTTCTCCGAAGAACAAGTAGTT 57.842 37.500 0.00 0.00 41.23 2.24
150 151 7.281040 TCTTTCTCCGAAGAACAAGTAGTTA 57.719 36.000 0.00 0.00 41.23 2.24
151 152 7.893658 TCTTTCTCCGAAGAACAAGTAGTTAT 58.106 34.615 0.00 0.00 41.23 1.89
152 153 7.813148 TCTTTCTCCGAAGAACAAGTAGTTATG 59.187 37.037 0.00 0.00 41.23 1.90
153 154 5.408356 TCTCCGAAGAACAAGTAGTTATGC 58.592 41.667 0.00 0.00 41.51 3.14
154 155 4.501071 TCCGAAGAACAAGTAGTTATGCC 58.499 43.478 0.00 0.00 41.51 4.40
155 156 4.222145 TCCGAAGAACAAGTAGTTATGCCT 59.778 41.667 0.00 0.00 41.51 4.75
156 157 5.419788 TCCGAAGAACAAGTAGTTATGCCTA 59.580 40.000 0.00 0.00 41.51 3.93
157 158 6.071221 TCCGAAGAACAAGTAGTTATGCCTAA 60.071 38.462 0.00 0.00 41.51 2.69
158 159 6.035758 CCGAAGAACAAGTAGTTATGCCTAAC 59.964 42.308 3.89 3.89 41.51 2.34
160 161 7.201444 CGAAGAACAAGTAGTTATGCCTAACTG 60.201 40.741 20.71 9.96 45.61 3.16
161 162 7.241042 AGAACAAGTAGTTATGCCTAACTGA 57.759 36.000 20.71 6.01 45.61 3.41
162 163 7.676947 AGAACAAGTAGTTATGCCTAACTGAA 58.323 34.615 20.71 3.05 45.61 3.02
163 164 8.154856 AGAACAAGTAGTTATGCCTAACTGAAA 58.845 33.333 20.71 2.41 45.61 2.69
164 165 8.863872 AACAAGTAGTTATGCCTAACTGAAAT 57.136 30.769 20.71 2.50 45.61 2.17
165 166 9.953565 AACAAGTAGTTATGCCTAACTGAAATA 57.046 29.630 20.71 1.76 45.61 1.40
166 167 9.379791 ACAAGTAGTTATGCCTAACTGAAATAC 57.620 33.333 20.71 12.24 45.61 1.89
167 168 9.601217 CAAGTAGTTATGCCTAACTGAAATACT 57.399 33.333 20.71 13.93 45.61 2.12
168 169 9.819267 AAGTAGTTATGCCTAACTGAAATACTC 57.181 33.333 20.71 5.09 45.61 2.59
169 170 9.203163 AGTAGTTATGCCTAACTGAAATACTCT 57.797 33.333 20.71 6.71 45.61 3.24
170 171 9.250624 GTAGTTATGCCTAACTGAAATACTCTG 57.749 37.037 20.71 0.00 45.61 3.35
171 172 7.275920 AGTTATGCCTAACTGAAATACTCTGG 58.724 38.462 12.91 0.00 44.64 3.86
172 173 5.700402 ATGCCTAACTGAAATACTCTGGT 57.300 39.130 0.00 0.00 0.00 4.00
173 174 6.808321 ATGCCTAACTGAAATACTCTGGTA 57.192 37.500 0.00 0.00 0.00 3.25
174 175 6.614694 TGCCTAACTGAAATACTCTGGTAA 57.385 37.500 0.00 0.00 0.00 2.85
175 176 7.011499 TGCCTAACTGAAATACTCTGGTAAA 57.989 36.000 0.00 0.00 0.00 2.01
176 177 7.630082 TGCCTAACTGAAATACTCTGGTAAAT 58.370 34.615 0.00 0.00 0.00 1.40
177 178 8.764558 TGCCTAACTGAAATACTCTGGTAAATA 58.235 33.333 0.00 0.00 0.00 1.40
178 179 9.609346 GCCTAACTGAAATACTCTGGTAAATAA 57.391 33.333 0.00 0.00 0.00 1.40
182 183 9.461312 AACTGAAATACTCTGGTAAATAATGCA 57.539 29.630 0.00 0.00 0.00 3.96
183 184 9.632638 ACTGAAATACTCTGGTAAATAATGCAT 57.367 29.630 0.00 0.00 0.00 3.96
184 185 9.888878 CTGAAATACTCTGGTAAATAATGCATG 57.111 33.333 0.00 0.00 0.00 4.06
185 186 9.407380 TGAAATACTCTGGTAAATAATGCATGT 57.593 29.630 0.00 0.00 0.00 3.21
189 190 7.701539 ACTCTGGTAAATAATGCATGTTTCA 57.298 32.000 12.14 6.40 0.00 2.69
190 191 8.121305 ACTCTGGTAAATAATGCATGTTTCAA 57.879 30.769 12.14 0.00 0.00 2.69
191 192 8.584157 ACTCTGGTAAATAATGCATGTTTCAAA 58.416 29.630 12.14 1.80 0.00 2.69
192 193 8.755696 TCTGGTAAATAATGCATGTTTCAAAC 57.244 30.769 12.14 0.00 0.00 2.93
193 194 7.540400 TCTGGTAAATAATGCATGTTTCAAACG 59.460 33.333 12.14 0.00 0.00 3.60
194 195 7.148641 TGGTAAATAATGCATGTTTCAAACGT 58.851 30.769 12.14 0.00 0.00 3.99
195 196 8.297426 TGGTAAATAATGCATGTTTCAAACGTA 58.703 29.630 12.14 0.00 0.00 3.57
196 197 9.296400 GGTAAATAATGCATGTTTCAAACGTAT 57.704 29.630 12.14 0.00 0.00 3.06
198 199 8.978564 AAATAATGCATGTTTCAAACGTATCA 57.021 26.923 0.00 0.00 0.00 2.15
199 200 9.585099 AAATAATGCATGTTTCAAACGTATCAT 57.415 25.926 0.00 0.00 0.00 2.45
203 204 9.585099 AATGCATGTTTCAAACGTATCATAATT 57.415 25.926 0.00 0.00 0.00 1.40
204 205 8.978564 TGCATGTTTCAAACGTATCATAATTT 57.021 26.923 0.00 0.00 0.00 1.82
205 206 9.416794 TGCATGTTTCAAACGTATCATAATTTT 57.583 25.926 0.00 0.00 0.00 1.82
206 207 9.674208 GCATGTTTCAAACGTATCATAATTTTG 57.326 29.630 0.00 0.00 0.00 2.44
207 208 9.674208 CATGTTTCAAACGTATCATAATTTTGC 57.326 29.630 0.00 0.00 0.00 3.68
208 209 8.803201 TGTTTCAAACGTATCATAATTTTGCA 57.197 26.923 0.00 0.00 0.00 4.08
209 210 9.249457 TGTTTCAAACGTATCATAATTTTGCAA 57.751 25.926 0.00 0.00 0.00 4.08
216 217 9.515020 AACGTATCATAATTTTGCAAATACTGG 57.485 29.630 13.65 3.67 0.00 4.00
217 218 8.898761 ACGTATCATAATTTTGCAAATACTGGA 58.101 29.630 13.65 9.01 0.00 3.86
218 219 9.729023 CGTATCATAATTTTGCAAATACTGGAA 57.271 29.630 13.65 0.00 32.83 3.53
228 229 9.868277 TTTTGCAAATACTGGAAAATAGTATGG 57.132 29.630 13.65 0.00 46.66 2.74
229 230 8.588290 TTGCAAATACTGGAAAATAGTATGGT 57.412 30.769 0.00 0.00 39.71 3.55
230 231 8.588290 TGCAAATACTGGAAAATAGTATGGTT 57.412 30.769 0.00 0.00 39.71 3.67
231 232 9.030452 TGCAAATACTGGAAAATAGTATGGTTT 57.970 29.630 0.00 0.00 39.71 3.27
232 233 9.869757 GCAAATACTGGAAAATAGTATGGTTTT 57.130 29.630 0.00 0.00 39.71 2.43
236 237 9.747898 ATACTGGAAAATAGTATGGTTTTCACA 57.252 29.630 11.30 7.03 42.96 3.58
237 238 8.472007 ACTGGAAAATAGTATGGTTTTCACAA 57.528 30.769 11.30 0.00 42.96 3.33
238 239 8.919145 ACTGGAAAATAGTATGGTTTTCACAAA 58.081 29.630 11.30 0.00 42.96 2.83
239 240 9.191995 CTGGAAAATAGTATGGTTTTCACAAAC 57.808 33.333 11.30 0.00 42.96 2.93
240 241 8.919145 TGGAAAATAGTATGGTTTTCACAAACT 58.081 29.630 11.30 0.00 42.96 2.66
241 242 9.191995 GGAAAATAGTATGGTTTTCACAAACTG 57.808 33.333 11.30 0.00 42.96 3.16
242 243 9.744468 GAAAATAGTATGGTTTTCACAAACTGT 57.256 29.630 5.89 0.00 41.92 3.55
259 260 9.804758 CACAAACTGTGGTATTTTAAGGTTTAA 57.195 29.630 0.00 0.00 44.27 1.52
264 265 9.192642 ACTGTGGTATTTTAAGGTTTAAACTGT 57.807 29.630 17.50 8.59 0.00 3.55
293 294 8.730970 TTTTTACATATACTTTGCGTCCAAAC 57.269 30.769 0.00 0.00 36.09 2.93
294 295 7.436430 TTTACATATACTTTGCGTCCAAACA 57.564 32.000 0.00 0.00 36.09 2.83
295 296 5.291293 ACATATACTTTGCGTCCAAACAC 57.709 39.130 0.00 0.00 36.09 3.32
296 297 5.001232 ACATATACTTTGCGTCCAAACACT 58.999 37.500 0.00 0.00 36.09 3.55
297 298 5.121768 ACATATACTTTGCGTCCAAACACTC 59.878 40.000 0.00 0.00 36.09 3.51
298 299 1.021968 ACTTTGCGTCCAAACACTCC 58.978 50.000 0.00 0.00 36.09 3.85
299 300 0.041312 CTTTGCGTCCAAACACTCCG 60.041 55.000 0.00 0.00 36.09 4.63
300 301 0.745128 TTTGCGTCCAAACACTCCGT 60.745 50.000 0.00 0.00 36.09 4.69
301 302 0.104487 TTGCGTCCAAACACTCCGTA 59.896 50.000 0.00 0.00 0.00 4.02
302 303 0.104487 TGCGTCCAAACACTCCGTAA 59.896 50.000 0.00 0.00 0.00 3.18
303 304 0.509929 GCGTCCAAACACTCCGTAAC 59.490 55.000 0.00 0.00 0.00 2.50
304 305 1.870993 GCGTCCAAACACTCCGTAACT 60.871 52.381 0.00 0.00 0.00 2.24
305 306 2.476821 CGTCCAAACACTCCGTAACTT 58.523 47.619 0.00 0.00 0.00 2.66
306 307 2.220133 CGTCCAAACACTCCGTAACTTG 59.780 50.000 0.00 0.00 0.00 3.16
307 308 2.546789 GTCCAAACACTCCGTAACTTGG 59.453 50.000 0.00 0.00 35.65 3.61
308 309 2.435069 TCCAAACACTCCGTAACTTGGA 59.565 45.455 0.00 0.00 39.91 3.53
315 316 3.505464 CTCCGTAACTTGGAGTACTGG 57.495 52.381 0.00 0.00 46.49 4.00
316 317 2.824341 CTCCGTAACTTGGAGTACTGGT 59.176 50.000 0.00 0.00 46.49 4.00
317 318 3.233507 TCCGTAACTTGGAGTACTGGTT 58.766 45.455 0.00 2.93 0.00 3.67
318 319 3.006110 TCCGTAACTTGGAGTACTGGTTG 59.994 47.826 0.00 0.00 0.00 3.77
319 320 3.006110 CCGTAACTTGGAGTACTGGTTGA 59.994 47.826 0.00 0.00 0.00 3.18
320 321 4.322499 CCGTAACTTGGAGTACTGGTTGAT 60.322 45.833 0.00 0.00 0.00 2.57
321 322 5.235516 CGTAACTTGGAGTACTGGTTGATT 58.764 41.667 0.00 0.00 0.00 2.57
322 323 6.392354 CGTAACTTGGAGTACTGGTTGATTA 58.608 40.000 0.00 0.00 0.00 1.75
323 324 7.039882 CGTAACTTGGAGTACTGGTTGATTAT 58.960 38.462 0.00 0.00 0.00 1.28
324 325 7.548075 CGTAACTTGGAGTACTGGTTGATTATT 59.452 37.037 0.00 0.00 0.00 1.40
325 326 9.227777 GTAACTTGGAGTACTGGTTGATTATTT 57.772 33.333 0.00 0.00 0.00 1.40
326 327 8.706322 AACTTGGAGTACTGGTTGATTATTTT 57.294 30.769 0.00 0.00 0.00 1.82
327 328 8.110860 ACTTGGAGTACTGGTTGATTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
328 329 7.724061 ACTTGGAGTACTGGTTGATTATTTTGT 59.276 33.333 0.00 0.00 0.00 2.83
329 330 8.472007 TTGGAGTACTGGTTGATTATTTTGTT 57.528 30.769 0.00 0.00 0.00 2.83
330 331 8.472007 TGGAGTACTGGTTGATTATTTTGTTT 57.528 30.769 0.00 0.00 0.00 2.83
331 332 8.919145 TGGAGTACTGGTTGATTATTTTGTTTT 58.081 29.630 0.00 0.00 0.00 2.43
332 333 9.758651 GGAGTACTGGTTGATTATTTTGTTTTT 57.241 29.630 0.00 0.00 0.00 1.94
336 337 8.125728 ACTGGTTGATTATTTTGTTTTTGACG 57.874 30.769 0.00 0.00 0.00 4.35
337 338 7.976734 ACTGGTTGATTATTTTGTTTTTGACGA 59.023 29.630 0.00 0.00 0.00 4.20
338 339 8.121167 TGGTTGATTATTTTGTTTTTGACGAC 57.879 30.769 0.00 0.00 0.00 4.34
339 340 7.976734 TGGTTGATTATTTTGTTTTTGACGACT 59.023 29.630 0.00 0.00 0.00 4.18
340 341 9.453325 GGTTGATTATTTTGTTTTTGACGACTA 57.547 29.630 0.00 0.00 0.00 2.59
345 346 8.844441 TTATTTTGTTTTTGACGACTAGTTGG 57.156 30.769 14.75 4.31 0.00 3.77
346 347 3.955771 TGTTTTTGACGACTAGTTGGC 57.044 42.857 14.75 12.21 0.00 4.52
347 348 3.537580 TGTTTTTGACGACTAGTTGGCT 58.462 40.909 17.20 0.00 0.00 4.75
348 349 3.311322 TGTTTTTGACGACTAGTTGGCTG 59.689 43.478 17.20 0.00 0.00 4.85
349 350 1.508632 TTTGACGACTAGTTGGCTGC 58.491 50.000 17.20 3.05 0.00 5.25
350 351 0.679505 TTGACGACTAGTTGGCTGCT 59.320 50.000 17.20 0.00 0.00 4.24
351 352 0.038251 TGACGACTAGTTGGCTGCTG 60.038 55.000 17.20 0.00 0.00 4.41
352 353 0.243907 GACGACTAGTTGGCTGCTGA 59.756 55.000 14.75 0.00 0.00 4.26
353 354 0.898320 ACGACTAGTTGGCTGCTGAT 59.102 50.000 14.75 0.00 0.00 2.90
354 355 1.284657 CGACTAGTTGGCTGCTGATG 58.715 55.000 1.70 0.00 0.00 3.07
355 356 1.661341 GACTAGTTGGCTGCTGATGG 58.339 55.000 0.00 0.00 0.00 3.51
356 357 0.987294 ACTAGTTGGCTGCTGATGGT 59.013 50.000 0.00 0.00 0.00 3.55
357 358 1.065854 ACTAGTTGGCTGCTGATGGTC 60.066 52.381 0.00 0.00 0.00 4.02
358 359 0.983467 TAGTTGGCTGCTGATGGTCA 59.017 50.000 0.00 0.00 0.00 4.02
359 360 0.322277 AGTTGGCTGCTGATGGTCAG 60.322 55.000 0.00 2.65 46.90 3.51
360 361 0.607489 GTTGGCTGCTGATGGTCAGT 60.607 55.000 8.58 0.00 45.94 3.41
361 362 0.983467 TTGGCTGCTGATGGTCAGTA 59.017 50.000 8.58 3.51 45.94 2.74
362 363 1.206878 TGGCTGCTGATGGTCAGTAT 58.793 50.000 8.58 0.00 45.94 2.12
363 364 1.561076 TGGCTGCTGATGGTCAGTATT 59.439 47.619 8.58 0.00 45.94 1.89
364 365 2.025981 TGGCTGCTGATGGTCAGTATTT 60.026 45.455 8.58 0.00 45.94 1.40
365 366 2.615912 GGCTGCTGATGGTCAGTATTTC 59.384 50.000 8.58 0.00 45.94 2.17
366 367 3.539604 GCTGCTGATGGTCAGTATTTCT 58.460 45.455 8.58 0.00 45.94 2.52
367 368 3.311871 GCTGCTGATGGTCAGTATTTCTG 59.688 47.826 8.58 0.00 45.94 3.02
368 369 4.511527 CTGCTGATGGTCAGTATTTCTGT 58.488 43.478 8.58 0.00 45.94 3.41
369 370 4.910195 TGCTGATGGTCAGTATTTCTGTT 58.090 39.130 8.58 0.00 45.94 3.16
370 371 5.316167 TGCTGATGGTCAGTATTTCTGTTT 58.684 37.500 8.58 0.00 45.94 2.83
371 372 5.769662 TGCTGATGGTCAGTATTTCTGTTTT 59.230 36.000 8.58 0.00 45.94 2.43
372 373 6.265196 TGCTGATGGTCAGTATTTCTGTTTTT 59.735 34.615 8.58 0.00 45.94 1.94
398 399 9.444600 TTGTTTAAATATAGTCGGAGCTTTTCT 57.555 29.630 0.00 0.00 0.00 2.52
407 408 6.969828 AGTCGGAGCTTTTCTATTTTACAG 57.030 37.500 0.00 0.00 0.00 2.74
408 409 5.875359 AGTCGGAGCTTTTCTATTTTACAGG 59.125 40.000 0.00 0.00 0.00 4.00
409 410 5.873164 GTCGGAGCTTTTCTATTTTACAGGA 59.127 40.000 0.00 0.00 0.00 3.86
410 411 6.539103 GTCGGAGCTTTTCTATTTTACAGGAT 59.461 38.462 0.00 0.00 0.00 3.24
411 412 6.538742 TCGGAGCTTTTCTATTTTACAGGATG 59.461 38.462 0.00 0.00 46.00 3.51
425 426 3.731652 CAGGATGTCAGTTTTTGGCAA 57.268 42.857 0.00 0.00 46.10 4.52
426 427 3.383761 CAGGATGTCAGTTTTTGGCAAC 58.616 45.455 0.00 0.00 46.10 4.17
427 428 3.068590 CAGGATGTCAGTTTTTGGCAACT 59.931 43.478 0.00 0.00 46.10 3.16
428 429 3.319122 AGGATGTCAGTTTTTGGCAACTC 59.681 43.478 0.00 0.00 46.10 3.01
429 430 3.552890 GGATGTCAGTTTTTGGCAACTCC 60.553 47.826 0.00 0.00 46.10 3.85
430 431 2.451490 TGTCAGTTTTTGGCAACTCCA 58.549 42.857 0.00 0.00 38.77 3.86
431 432 2.165437 TGTCAGTTTTTGGCAACTCCAC 59.835 45.455 0.00 0.00 46.55 4.02
432 433 2.427095 GTCAGTTTTTGGCAACTCCACT 59.573 45.455 0.00 0.00 46.55 4.00
433 434 3.096092 TCAGTTTTTGGCAACTCCACTT 58.904 40.909 0.00 0.00 46.55 3.16
434 435 3.119173 TCAGTTTTTGGCAACTCCACTTG 60.119 43.478 0.00 0.00 46.55 3.16
435 436 2.168313 AGTTTTTGGCAACTCCACTTGG 59.832 45.455 0.00 0.00 46.55 3.61
436 437 1.118838 TTTTGGCAACTCCACTTGGG 58.881 50.000 0.00 0.00 46.55 4.12
437 438 1.398958 TTTGGCAACTCCACTTGGGC 61.399 55.000 0.00 0.00 46.55 5.36
438 439 2.991540 GGCAACTCCACTTGGGCC 60.992 66.667 0.00 0.00 36.21 5.80
439 440 2.116125 GCAACTCCACTTGGGCCT 59.884 61.111 4.53 0.00 36.21 5.19
440 441 1.531602 GCAACTCCACTTGGGCCTT 60.532 57.895 4.53 0.00 36.21 4.35
441 442 0.251165 GCAACTCCACTTGGGCCTTA 60.251 55.000 4.53 0.00 36.21 2.69
442 443 1.826385 CAACTCCACTTGGGCCTTAG 58.174 55.000 4.53 4.77 36.21 2.18
443 444 0.698818 AACTCCACTTGGGCCTTAGG 59.301 55.000 4.53 0.00 36.21 2.69
453 454 4.142780 GCCTTAGGCCCGTTGATC 57.857 61.111 13.12 0.00 44.06 2.92
454 455 1.527370 GCCTTAGGCCCGTTGATCT 59.473 57.895 13.12 0.00 44.06 2.75
455 456 0.815615 GCCTTAGGCCCGTTGATCTG 60.816 60.000 13.12 0.00 44.06 2.90
456 457 0.179045 CCTTAGGCCCGTTGATCTGG 60.179 60.000 0.00 0.00 0.00 3.86
457 458 0.541863 CTTAGGCCCGTTGATCTGGT 59.458 55.000 0.00 0.00 0.00 4.00
458 459 0.539986 TTAGGCCCGTTGATCTGGTC 59.460 55.000 0.00 0.00 0.00 4.02
459 460 1.335132 TAGGCCCGTTGATCTGGTCC 61.335 60.000 0.00 0.00 0.00 4.46
460 461 2.511600 GCCCGTTGATCTGGTCCG 60.512 66.667 0.00 0.00 0.00 4.79
461 462 2.511600 CCCGTTGATCTGGTCCGC 60.512 66.667 0.00 0.00 0.00 5.54
462 463 2.885644 CCGTTGATCTGGTCCGCG 60.886 66.667 0.00 0.00 0.00 6.46
550 561 7.510549 AATCGTCAAAACCTATCAATATGGG 57.489 36.000 0.00 0.00 39.60 4.00
587 598 1.003118 CTCAACCCGAGGAATCCAACA 59.997 52.381 0.61 0.00 38.18 3.33
590 601 0.324943 ACCCGAGGAATCCAACAGTG 59.675 55.000 0.61 0.00 0.00 3.66
593 604 2.552155 CCCGAGGAATCCAACAGTGAAA 60.552 50.000 0.61 0.00 0.00 2.69
595 606 3.058224 CCGAGGAATCCAACAGTGAAAAC 60.058 47.826 0.61 0.00 0.00 2.43
596 607 3.563808 CGAGGAATCCAACAGTGAAAACA 59.436 43.478 0.61 0.00 0.00 2.83
599 610 5.690865 AGGAATCCAACAGTGAAAACAGTA 58.309 37.500 0.61 0.00 0.00 2.74
601 612 5.298276 GGAATCCAACAGTGAAAACAGTACA 59.702 40.000 0.00 0.00 0.00 2.90
608 619 7.220683 CCAACAGTGAAAACAGTACAAGATTTG 59.779 37.037 0.00 0.00 0.00 2.32
617 628 2.063266 GTACAAGATTTGGACGCACGA 58.937 47.619 0.00 0.00 34.26 4.35
618 629 1.808411 ACAAGATTTGGACGCACGAT 58.192 45.000 0.00 0.00 34.12 3.73
634 645 6.077838 ACGCACGATTTAAGAGAAAACATTC 58.922 36.000 0.00 0.00 0.00 2.67
636 647 7.117236 ACGCACGATTTAAGAGAAAACATTCTA 59.883 33.333 0.00 0.00 0.00 2.10
678 689 1.066454 AGGAAAAACTTTCGGGTTGCG 59.934 47.619 0.00 0.00 0.00 4.85
686 697 0.462225 TTTCGGGTTGCGACAAGTGA 60.462 50.000 6.39 0.00 0.00 3.41
695 706 0.110509 GCGACAAGTGACACATGCAG 60.111 55.000 10.62 6.29 0.00 4.41
696 707 0.110509 CGACAAGTGACACATGCAGC 60.111 55.000 10.62 0.64 0.00 5.25
706 717 3.251763 CATGCAGCGCGCCATTTG 61.252 61.111 30.33 20.85 41.33 2.32
708 719 3.688475 ATGCAGCGCGCCATTTGTC 62.688 57.895 30.33 15.28 41.33 3.18
710 721 4.088762 CAGCGCGCCATTTGTCGT 62.089 61.111 30.33 1.73 0.00 4.34
720 731 2.227865 GCCATTTGTCGTAACATGTGGT 59.772 45.455 0.00 0.00 40.11 4.16
731 742 2.435372 ACATGTGGTGGTGAAAGTGT 57.565 45.000 0.00 0.00 0.00 3.55
733 744 2.687935 ACATGTGGTGGTGAAAGTGTTC 59.312 45.455 0.00 0.00 0.00 3.18
741 752 4.081917 GGTGGTGAAAGTGTTCTTTGGAAA 60.082 41.667 0.00 0.00 42.99 3.13
742 753 5.102313 GTGGTGAAAGTGTTCTTTGGAAAG 58.898 41.667 0.00 0.00 42.99 2.62
743 754 5.013547 TGGTGAAAGTGTTCTTTGGAAAGA 58.986 37.500 0.00 0.00 42.99 2.52
744 755 5.125417 TGGTGAAAGTGTTCTTTGGAAAGAG 59.875 40.000 2.25 0.00 45.01 2.85
745 756 5.125578 GGTGAAAGTGTTCTTTGGAAAGAGT 59.874 40.000 2.25 0.00 45.01 3.24
746 757 6.317893 GGTGAAAGTGTTCTTTGGAAAGAGTA 59.682 38.462 2.25 0.00 45.01 2.59
747 758 7.187480 GTGAAAGTGTTCTTTGGAAAGAGTAC 58.813 38.462 2.25 6.02 45.01 2.73
748 759 7.065923 GTGAAAGTGTTCTTTGGAAAGAGTACT 59.934 37.037 0.00 0.00 45.01 2.73
749 760 7.610305 TGAAAGTGTTCTTTGGAAAGAGTACTT 59.390 33.333 18.10 18.10 44.98 2.24
750 761 7.555306 AAGTGTTCTTTGGAAAGAGTACTTC 57.445 36.000 18.10 0.00 45.01 3.01
751 762 6.890293 AGTGTTCTTTGGAAAGAGTACTTCT 58.110 36.000 0.00 0.00 45.01 2.85
752 763 6.987404 AGTGTTCTTTGGAAAGAGTACTTCTC 59.013 38.462 0.00 0.00 45.01 2.87
753 764 6.761714 GTGTTCTTTGGAAAGAGTACTTCTCA 59.238 38.462 0.00 0.00 45.01 3.27
754 765 7.280205 GTGTTCTTTGGAAAGAGTACTTCTCAA 59.720 37.037 0.00 0.00 45.01 3.02
755 766 7.993183 TGTTCTTTGGAAAGAGTACTTCTCAAT 59.007 33.333 0.00 0.00 45.01 2.57
756 767 8.841300 GTTCTTTGGAAAGAGTACTTCTCAATT 58.159 33.333 0.00 0.00 45.01 2.32
758 769 9.712305 TCTTTGGAAAGAGTACTTCTCAATTAG 57.288 33.333 0.00 0.00 44.98 1.73
759 770 9.495572 CTTTGGAAAGAGTACTTCTCAATTAGT 57.504 33.333 0.00 0.00 44.98 2.24
777 788 6.743575 ATTAGTGATTTCGAAGAAGTTGGG 57.256 37.500 0.00 0.00 45.90 4.12
780 791 4.000988 GTGATTTCGAAGAAGTTGGGCTA 58.999 43.478 0.00 0.00 45.90 3.93
851 862 1.918293 AGGCCCGTTGACCTGATCA 60.918 57.895 0.00 0.00 34.07 2.92
867 881 3.554934 TGATCAGCGAATTTAATGGGCT 58.445 40.909 0.00 0.00 0.00 5.19
1196 1261 2.060980 GTGAGGATGAGGAGGCCGT 61.061 63.158 0.00 0.00 0.00 5.68
1321 1386 0.034616 CCAAGCCATCTCGATCCCTC 59.965 60.000 0.00 0.00 0.00 4.30
1322 1387 1.047002 CAAGCCATCTCGATCCCTCT 58.953 55.000 0.00 0.00 0.00 3.69
1323 1388 1.415659 CAAGCCATCTCGATCCCTCTT 59.584 52.381 0.00 0.00 0.00 2.85
1324 1389 1.337118 AGCCATCTCGATCCCTCTTC 58.663 55.000 0.00 0.00 0.00 2.87
1325 1390 1.133199 AGCCATCTCGATCCCTCTTCT 60.133 52.381 0.00 0.00 0.00 2.85
1326 1391 1.691434 GCCATCTCGATCCCTCTTCTT 59.309 52.381 0.00 0.00 0.00 2.52
1327 1392 2.288763 GCCATCTCGATCCCTCTTCTTC 60.289 54.545 0.00 0.00 0.00 2.87
1328 1393 3.230134 CCATCTCGATCCCTCTTCTTCT 58.770 50.000 0.00 0.00 0.00 2.85
1329 1394 3.640967 CCATCTCGATCCCTCTTCTTCTT 59.359 47.826 0.00 0.00 0.00 2.52
1330 1395 4.261994 CCATCTCGATCCCTCTTCTTCTTC 60.262 50.000 0.00 0.00 0.00 2.87
1331 1396 4.243793 TCTCGATCCCTCTTCTTCTTCT 57.756 45.455 0.00 0.00 0.00 2.85
1332 1397 4.605183 TCTCGATCCCTCTTCTTCTTCTT 58.395 43.478 0.00 0.00 0.00 2.52
1333 1398 4.642885 TCTCGATCCCTCTTCTTCTTCTTC 59.357 45.833 0.00 0.00 0.00 2.87
1334 1399 4.605183 TCGATCCCTCTTCTTCTTCTTCT 58.395 43.478 0.00 0.00 0.00 2.85
1335 1400 5.020132 TCGATCCCTCTTCTTCTTCTTCTT 58.980 41.667 0.00 0.00 0.00 2.52
1525 1599 0.673985 TCTCGGTGAAGGTGACACAG 59.326 55.000 8.08 0.00 39.65 3.66
1530 1604 2.143925 GGTGAAGGTGACACAGTTAGC 58.856 52.381 8.08 0.00 39.65 3.09
1532 1606 3.006537 GGTGAAGGTGACACAGTTAGCTA 59.993 47.826 8.08 0.00 39.65 3.32
1667 1741 2.308570 TCAGGGGTATGTGCATGTCTTT 59.691 45.455 0.00 0.00 0.00 2.52
1758 1836 5.289595 CGGTCACTGCTAATTTGCTATAGA 58.710 41.667 12.99 3.70 0.00 1.98
1760 1838 6.284459 GGTCACTGCTAATTTGCTATAGAGT 58.716 40.000 12.99 4.92 0.00 3.24
1761 1839 6.201806 GGTCACTGCTAATTTGCTATAGAGTG 59.798 42.308 17.28 17.28 33.46 3.51
1831 1909 1.278238 CACCGCGGTTAGATCAACTC 58.722 55.000 32.11 0.00 37.30 3.01
2360 2498 8.500753 TGTTTTGAACATGTCCTATATACACC 57.499 34.615 0.00 0.00 36.25 4.16
2520 2763 4.860022 AGCTACCAGAATTATTTGTGCCT 58.140 39.130 0.00 0.00 0.00 4.75
2567 2810 8.112099 GCAGACTGCAGAAAATATATGTTTTG 57.888 34.615 23.35 4.00 44.26 2.44
2616 2860 5.640147 AGAAAAATTGGGTGTATGGAGTGA 58.360 37.500 0.00 0.00 0.00 3.41
2627 2871 0.537188 ATGGAGTGAGGCGTAACCAG 59.463 55.000 0.00 0.00 43.14 4.00
2687 2931 2.618241 GTGTTGTTGCAATCAGACCTCA 59.382 45.455 0.59 0.00 0.00 3.86
2696 2940 3.721706 CAGACCTCACCCCCAGCC 61.722 72.222 0.00 0.00 0.00 4.85
2703 2947 4.115199 CACCCCCAGCCTACCAGC 62.115 72.222 0.00 0.00 0.00 4.85
3176 3423 8.634475 TTCATTCTCACTATAGAACAATGACG 57.366 34.615 6.78 0.00 38.28 4.35
3177 3424 6.697455 TCATTCTCACTATAGAACAATGACGC 59.303 38.462 6.78 0.00 38.28 5.19
3239 3486 5.964958 TCCACTAGAAAGCCAAATTTGAG 57.035 39.130 19.86 10.54 0.00 3.02
3375 3622 3.109619 CGCCGTCTGAAGATAAACTCTC 58.890 50.000 0.00 0.00 31.03 3.20
3420 3667 5.958380 ACAAGTACTATCTTCCTGGTGATCA 59.042 40.000 0.00 0.00 0.00 2.92
3587 3842 2.821366 CACGCATGGCCAGTCTCC 60.821 66.667 13.05 0.00 0.00 3.71
3668 3923 2.607038 GGGGCAATTGAGTTTTCACGAC 60.607 50.000 10.34 0.00 31.71 4.34
3861 4116 3.988379 TCTTTTGAACTGGTGACATGC 57.012 42.857 0.00 0.00 41.51 4.06
3938 4433 5.291614 TGACCTTAAACGTGTACTGTTGTTC 59.708 40.000 5.08 0.62 0.00 3.18
3939 4434 4.571984 ACCTTAAACGTGTACTGTTGTTCC 59.428 41.667 5.08 0.00 0.00 3.62
3940 4435 4.024641 CCTTAAACGTGTACTGTTGTTCCC 60.025 45.833 5.08 0.00 0.00 3.97
3941 4436 1.957668 AACGTGTACTGTTGTTCCCC 58.042 50.000 0.00 0.00 0.00 4.81
3942 4437 0.249573 ACGTGTACTGTTGTTCCCCG 60.250 55.000 0.00 0.00 0.00 5.73
3943 4438 1.562575 CGTGTACTGTTGTTCCCCGC 61.563 60.000 0.00 0.00 0.00 6.13
3944 4439 0.533308 GTGTACTGTTGTTCCCCGCA 60.533 55.000 0.00 0.00 0.00 5.69
3945 4440 0.180642 TGTACTGTTGTTCCCCGCAA 59.819 50.000 0.00 0.00 0.00 4.85
3946 4441 0.589708 GTACTGTTGTTCCCCGCAAC 59.410 55.000 0.00 0.00 44.50 4.17
3950 4445 3.742983 GTTGTTCCCCGCAACAAAA 57.257 47.368 2.00 0.00 45.57 2.44
3951 4446 2.011540 GTTGTTCCCCGCAACAAAAA 57.988 45.000 2.00 0.00 45.57 1.94
3997 4492 9.665719 TTTGCTATGAATGTTGTAGAGAATACA 57.334 29.630 0.00 0.00 0.00 2.29
4123 4996 2.364324 GGGACATTCTCATGCATGCAAT 59.636 45.455 26.68 17.78 33.05 3.56
4205 5239 5.733620 AAGCATTGATGTTGAGTGGAATT 57.266 34.783 0.00 0.00 0.00 2.17
4239 5273 7.777910 CCTGAAACATAATCCCCATTTGTACTA 59.222 37.037 0.00 0.00 0.00 1.82
4244 5278 9.574516 AACATAATCCCCATTTGTACTATTCTC 57.425 33.333 0.00 0.00 0.00 2.87
4248 5282 5.437060 TCCCCATTTGTACTATTCTCTTGC 58.563 41.667 0.00 0.00 0.00 4.01
4250 5284 5.297776 CCCCATTTGTACTATTCTCTTGCAG 59.702 44.000 0.00 0.00 0.00 4.41
4251 5285 5.220931 CCCATTTGTACTATTCTCTTGCAGC 60.221 44.000 0.00 0.00 0.00 5.25
4252 5286 5.355071 CCATTTGTACTATTCTCTTGCAGCA 59.645 40.000 0.00 0.00 0.00 4.41
4253 5287 6.039047 CCATTTGTACTATTCTCTTGCAGCAT 59.961 38.462 0.00 0.00 0.00 3.79
4268 5302 3.963622 GCATCAAGCGTGTCAGAAG 57.036 52.632 0.00 0.00 0.00 2.85
4269 5303 1.432514 GCATCAAGCGTGTCAGAAGA 58.567 50.000 0.00 0.00 0.00 2.87
4270 5304 1.800586 GCATCAAGCGTGTCAGAAGAA 59.199 47.619 0.00 0.00 0.00 2.52
4271 5305 2.159734 GCATCAAGCGTGTCAGAAGAAG 60.160 50.000 0.00 0.00 0.00 2.85
4273 5307 0.162507 CAAGCGTGTCAGAAGAAGCG 59.837 55.000 0.00 0.00 0.00 4.68
4275 5309 0.387878 AGCGTGTCAGAAGAAGCGAG 60.388 55.000 0.00 0.00 0.00 5.03
4276 5310 1.950098 GCGTGTCAGAAGAAGCGAGC 61.950 60.000 0.00 0.00 0.00 5.03
4277 5311 0.664466 CGTGTCAGAAGAAGCGAGCA 60.664 55.000 0.00 0.00 0.00 4.26
4279 5313 1.658095 GTGTCAGAAGAAGCGAGCATC 59.342 52.381 0.00 0.00 0.00 3.91
4291 5325 2.387309 GAGCATCGTGGACACATGG 58.613 57.895 0.00 0.00 34.31 3.66
4292 5326 1.709147 GAGCATCGTGGACACATGGC 61.709 60.000 0.00 2.64 34.31 4.40
4293 5327 2.764314 GCATCGTGGACACATGGCC 61.764 63.158 0.00 0.00 45.93 5.36
4295 5329 2.601702 ATCGTGGACACATGGCCCA 61.602 57.895 0.00 0.00 44.80 5.36
4296 5330 1.925285 ATCGTGGACACATGGCCCAT 61.925 55.000 0.00 0.00 44.80 4.00
4297 5331 2.114670 CGTGGACACATGGCCCATC 61.115 63.158 0.00 0.00 44.80 3.51
4298 5332 1.754234 GTGGACACATGGCCCATCC 60.754 63.158 0.00 0.00 44.80 3.51
4299 5333 2.123726 GGACACATGGCCCATCCC 60.124 66.667 0.00 0.00 37.19 3.85
4300 5334 2.123726 GACACATGGCCCATCCCC 60.124 66.667 0.00 0.00 0.00 4.81
4351 5467 3.000476 CACGTACACGAATCAATTACCGG 60.000 47.826 9.04 0.00 43.02 5.28
4375 5491 2.309764 AATCCAGAAATCACGCGCGC 62.310 55.000 32.58 23.91 0.00 6.86
4533 5649 4.944048 AGAAATCAAACCCTCCAAAAACG 58.056 39.130 0.00 0.00 0.00 3.60
4587 5704 1.340248 TCCCATTTATCTCGAGACGGC 59.660 52.381 19.30 0.00 0.00 5.68
4593 5710 0.738975 TATCTCGAGACGGCCTTGTG 59.261 55.000 19.30 0.00 0.00 3.33
4610 5727 6.352222 GGCCTTGTGCATATATACCATCTACT 60.352 42.308 0.00 0.00 43.89 2.57
4630 5747 3.318006 TACACACAATCCCGGCCGG 62.318 63.158 37.99 37.99 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.464997 CAACAAAGTTCTAGCCGAGGC 59.535 52.381 5.89 5.89 42.33 4.70
8 9 2.737252 GACAACAAAGTTCTAGCCGAGG 59.263 50.000 0.00 0.00 0.00 4.63
9 10 3.654414 AGACAACAAAGTTCTAGCCGAG 58.346 45.455 0.00 0.00 0.00 4.63
10 11 3.069016 TGAGACAACAAAGTTCTAGCCGA 59.931 43.478 0.00 0.00 0.00 5.54
11 12 3.390135 TGAGACAACAAAGTTCTAGCCG 58.610 45.455 0.00 0.00 0.00 5.52
12 13 7.550906 AGAATATGAGACAACAAAGTTCTAGCC 59.449 37.037 0.00 0.00 0.00 3.93
13 14 8.485976 AGAATATGAGACAACAAAGTTCTAGC 57.514 34.615 0.00 0.00 0.00 3.42
14 15 9.092876 GGAGAATATGAGACAACAAAGTTCTAG 57.907 37.037 0.00 0.00 0.00 2.43
15 16 8.816894 AGGAGAATATGAGACAACAAAGTTCTA 58.183 33.333 0.00 0.00 0.00 2.10
16 17 7.684529 AGGAGAATATGAGACAACAAAGTTCT 58.315 34.615 0.00 0.00 0.00 3.01
17 18 7.065204 GGAGGAGAATATGAGACAACAAAGTTC 59.935 40.741 0.00 0.00 0.00 3.01
18 19 6.881602 GGAGGAGAATATGAGACAACAAAGTT 59.118 38.462 0.00 0.00 0.00 2.66
19 20 6.214412 AGGAGGAGAATATGAGACAACAAAGT 59.786 38.462 0.00 0.00 0.00 2.66
20 21 6.648192 AGGAGGAGAATATGAGACAACAAAG 58.352 40.000 0.00 0.00 0.00 2.77
21 22 6.627087 AGGAGGAGAATATGAGACAACAAA 57.373 37.500 0.00 0.00 0.00 2.83
22 23 6.627087 AAGGAGGAGAATATGAGACAACAA 57.373 37.500 0.00 0.00 0.00 2.83
23 24 7.733773 TTAAGGAGGAGAATATGAGACAACA 57.266 36.000 0.00 0.00 0.00 3.33
32 33 9.067986 CGGCTTTTTAATTAAGGAGGAGAATAT 57.932 33.333 0.00 0.00 0.00 1.28
33 34 7.012989 GCGGCTTTTTAATTAAGGAGGAGAATA 59.987 37.037 0.00 0.00 0.00 1.75
34 35 6.183360 GCGGCTTTTTAATTAAGGAGGAGAAT 60.183 38.462 0.00 0.00 0.00 2.40
35 36 5.124936 GCGGCTTTTTAATTAAGGAGGAGAA 59.875 40.000 0.00 0.00 0.00 2.87
36 37 4.638865 GCGGCTTTTTAATTAAGGAGGAGA 59.361 41.667 0.00 0.00 0.00 3.71
37 38 4.398044 TGCGGCTTTTTAATTAAGGAGGAG 59.602 41.667 0.00 0.00 0.00 3.69
38 39 4.337145 TGCGGCTTTTTAATTAAGGAGGA 58.663 39.130 0.00 0.00 0.00 3.71
39 40 4.440112 CCTGCGGCTTTTTAATTAAGGAGG 60.440 45.833 0.00 6.19 0.00 4.30
40 41 4.440112 CCCTGCGGCTTTTTAATTAAGGAG 60.440 45.833 0.00 2.40 0.00 3.69
41 42 3.445805 CCCTGCGGCTTTTTAATTAAGGA 59.554 43.478 0.00 0.00 0.00 3.36
42 43 3.430236 CCCCTGCGGCTTTTTAATTAAGG 60.430 47.826 0.00 0.00 0.00 2.69
43 44 3.780902 CCCCTGCGGCTTTTTAATTAAG 58.219 45.455 0.00 0.00 0.00 1.85
44 45 3.878160 CCCCTGCGGCTTTTTAATTAA 57.122 42.857 0.00 0.00 0.00 1.40
71 72 4.141459 GGAGAAAACTAGACCAATAGGGGG 60.141 50.000 0.00 0.00 42.91 5.40
72 73 4.443034 CGGAGAAAACTAGACCAATAGGGG 60.443 50.000 0.00 0.00 42.91 4.79
73 74 4.161754 ACGGAGAAAACTAGACCAATAGGG 59.838 45.833 0.00 0.00 44.81 3.53
74 75 5.340439 ACGGAGAAAACTAGACCAATAGG 57.660 43.478 0.00 0.00 42.21 2.57
75 76 6.402226 GCAAACGGAGAAAACTAGACCAATAG 60.402 42.308 0.00 0.00 0.00 1.73
76 77 5.410439 GCAAACGGAGAAAACTAGACCAATA 59.590 40.000 0.00 0.00 0.00 1.90
77 78 4.215613 GCAAACGGAGAAAACTAGACCAAT 59.784 41.667 0.00 0.00 0.00 3.16
78 79 3.562557 GCAAACGGAGAAAACTAGACCAA 59.437 43.478 0.00 0.00 0.00 3.67
79 80 3.135994 GCAAACGGAGAAAACTAGACCA 58.864 45.455 0.00 0.00 0.00 4.02
80 81 3.059120 GTGCAAACGGAGAAAACTAGACC 60.059 47.826 0.00 0.00 0.00 3.85
81 82 3.808174 AGTGCAAACGGAGAAAACTAGAC 59.192 43.478 0.00 0.00 0.00 2.59
82 83 4.067972 AGTGCAAACGGAGAAAACTAGA 57.932 40.909 0.00 0.00 0.00 2.43
83 84 7.772332 ATATAGTGCAAACGGAGAAAACTAG 57.228 36.000 0.00 0.00 0.00 2.57
84 85 9.472361 GATATATAGTGCAAACGGAGAAAACTA 57.528 33.333 0.00 0.00 0.00 2.24
85 86 7.985184 TGATATATAGTGCAAACGGAGAAAACT 59.015 33.333 0.00 0.00 0.00 2.66
86 87 8.138365 TGATATATAGTGCAAACGGAGAAAAC 57.862 34.615 0.00 0.00 0.00 2.43
87 88 8.902540 ATGATATATAGTGCAAACGGAGAAAA 57.097 30.769 0.00 0.00 0.00 2.29
88 89 8.147704 TGATGATATATAGTGCAAACGGAGAAA 58.852 33.333 0.00 0.00 0.00 2.52
89 90 7.666623 TGATGATATATAGTGCAAACGGAGAA 58.333 34.615 0.00 0.00 0.00 2.87
90 91 7.227049 TGATGATATATAGTGCAAACGGAGA 57.773 36.000 0.00 0.00 0.00 3.71
91 92 7.063898 CCTTGATGATATATAGTGCAAACGGAG 59.936 40.741 0.00 0.00 0.00 4.63
92 93 6.873605 CCTTGATGATATATAGTGCAAACGGA 59.126 38.462 0.00 0.00 0.00 4.69
93 94 6.650807 ACCTTGATGATATATAGTGCAAACGG 59.349 38.462 0.00 0.00 0.00 4.44
94 95 7.658179 ACCTTGATGATATATAGTGCAAACG 57.342 36.000 0.00 0.00 0.00 3.60
108 109 8.743714 GGAGAAAGAATGTAAAACCTTGATGAT 58.256 33.333 0.00 0.00 0.00 2.45
109 110 7.094805 CGGAGAAAGAATGTAAAACCTTGATGA 60.095 37.037 0.00 0.00 0.00 2.92
110 111 7.023575 CGGAGAAAGAATGTAAAACCTTGATG 58.976 38.462 0.00 0.00 0.00 3.07
111 112 6.940298 TCGGAGAAAGAATGTAAAACCTTGAT 59.060 34.615 0.00 0.00 0.00 2.57
112 113 6.292923 TCGGAGAAAGAATGTAAAACCTTGA 58.707 36.000 0.00 0.00 0.00 3.02
113 114 6.554334 TCGGAGAAAGAATGTAAAACCTTG 57.446 37.500 0.00 0.00 0.00 3.61
114 115 6.996282 TCTTCGGAGAAAGAATGTAAAACCTT 59.004 34.615 0.00 0.00 45.90 3.50
115 116 6.531021 TCTTCGGAGAAAGAATGTAAAACCT 58.469 36.000 0.00 0.00 45.90 3.50
116 117 6.796705 TCTTCGGAGAAAGAATGTAAAACC 57.203 37.500 0.00 0.00 45.90 3.27
117 118 7.636326 TGTTCTTCGGAGAAAGAATGTAAAAC 58.364 34.615 7.99 0.00 45.90 2.43
118 119 7.795482 TGTTCTTCGGAGAAAGAATGTAAAA 57.205 32.000 7.99 0.00 45.90 1.52
119 120 7.497909 ACTTGTTCTTCGGAGAAAGAATGTAAA 59.502 33.333 7.99 0.00 45.90 2.01
120 121 6.990349 ACTTGTTCTTCGGAGAAAGAATGTAA 59.010 34.615 7.99 0.85 45.90 2.41
121 122 6.522054 ACTTGTTCTTCGGAGAAAGAATGTA 58.478 36.000 7.99 0.00 45.90 2.29
122 123 5.368989 ACTTGTTCTTCGGAGAAAGAATGT 58.631 37.500 7.99 3.11 45.90 2.71
123 124 5.931441 ACTTGTTCTTCGGAGAAAGAATG 57.069 39.130 7.99 2.51 45.90 2.67
124 125 6.760291 ACTACTTGTTCTTCGGAGAAAGAAT 58.240 36.000 7.99 0.00 45.90 2.40
125 126 6.158023 ACTACTTGTTCTTCGGAGAAAGAA 57.842 37.500 7.99 3.43 45.90 2.52
126 127 5.786264 ACTACTTGTTCTTCGGAGAAAGA 57.214 39.130 7.99 0.00 45.90 2.52
127 128 7.412020 GCATAACTACTTGTTCTTCGGAGAAAG 60.412 40.741 7.99 5.63 43.21 2.62
128 129 6.367969 GCATAACTACTTGTTCTTCGGAGAAA 59.632 38.462 7.99 0.00 43.21 2.52
129 130 5.867716 GCATAACTACTTGTTCTTCGGAGAA 59.132 40.000 0.70 0.70 40.17 2.87
130 131 5.408356 GCATAACTACTTGTTCTTCGGAGA 58.592 41.667 0.00 0.00 39.89 3.71
131 132 4.567159 GGCATAACTACTTGTTCTTCGGAG 59.433 45.833 0.00 0.00 39.89 4.63
132 133 4.222145 AGGCATAACTACTTGTTCTTCGGA 59.778 41.667 0.00 0.00 39.89 4.55
133 134 4.504858 AGGCATAACTACTTGTTCTTCGG 58.495 43.478 0.00 0.00 39.89 4.30
134 135 6.990546 GTTAGGCATAACTACTTGTTCTTCG 58.009 40.000 13.79 0.00 38.61 3.79
147 148 7.048512 ACCAGAGTATTTCAGTTAGGCATAAC 58.951 38.462 13.23 13.23 41.43 1.89
148 149 7.195374 ACCAGAGTATTTCAGTTAGGCATAA 57.805 36.000 0.00 0.00 0.00 1.90
149 150 6.808321 ACCAGAGTATTTCAGTTAGGCATA 57.192 37.500 0.00 0.00 0.00 3.14
150 151 5.700402 ACCAGAGTATTTCAGTTAGGCAT 57.300 39.130 0.00 0.00 0.00 4.40
151 152 6.614694 TTACCAGAGTATTTCAGTTAGGCA 57.385 37.500 0.00 0.00 0.00 4.75
152 153 9.609346 TTATTTACCAGAGTATTTCAGTTAGGC 57.391 33.333 0.00 0.00 0.00 3.93
156 157 9.461312 TGCATTATTTACCAGAGTATTTCAGTT 57.539 29.630 0.00 0.00 0.00 3.16
157 158 9.632638 ATGCATTATTTACCAGAGTATTTCAGT 57.367 29.630 0.00 0.00 0.00 3.41
158 159 9.888878 CATGCATTATTTACCAGAGTATTTCAG 57.111 33.333 0.00 0.00 0.00 3.02
159 160 9.407380 ACATGCATTATTTACCAGAGTATTTCA 57.593 29.630 0.00 0.00 0.00 2.69
163 164 9.407380 TGAAACATGCATTATTTACCAGAGTAT 57.593 29.630 0.00 0.00 0.00 2.12
164 165 8.800370 TGAAACATGCATTATTTACCAGAGTA 57.200 30.769 0.00 0.00 0.00 2.59
165 166 7.701539 TGAAACATGCATTATTTACCAGAGT 57.298 32.000 0.00 0.00 0.00 3.24
166 167 8.863049 GTTTGAAACATGCATTATTTACCAGAG 58.137 33.333 2.68 0.00 0.00 3.35
167 168 7.540400 CGTTTGAAACATGCATTATTTACCAGA 59.460 33.333 8.93 0.00 0.00 3.86
168 169 7.328249 ACGTTTGAAACATGCATTATTTACCAG 59.672 33.333 8.93 0.00 0.00 4.00
169 170 7.148641 ACGTTTGAAACATGCATTATTTACCA 58.851 30.769 8.93 0.00 0.00 3.25
170 171 7.575332 ACGTTTGAAACATGCATTATTTACC 57.425 32.000 8.93 0.00 0.00 2.85
173 174 8.978564 TGATACGTTTGAAACATGCATTATTT 57.021 26.923 8.93 0.15 0.00 1.40
177 178 9.585099 AATTATGATACGTTTGAAACATGCATT 57.415 25.926 8.93 0.00 0.00 3.56
178 179 9.585099 AAATTATGATACGTTTGAAACATGCAT 57.415 25.926 8.93 8.05 0.00 3.96
179 180 8.978564 AAATTATGATACGTTTGAAACATGCA 57.021 26.923 8.93 0.00 0.00 3.96
180 181 9.674208 CAAAATTATGATACGTTTGAAACATGC 57.326 29.630 8.93 0.00 32.18 4.06
181 182 9.674208 GCAAAATTATGATACGTTTGAAACATG 57.326 29.630 8.93 0.00 32.18 3.21
182 183 9.416794 TGCAAAATTATGATACGTTTGAAACAT 57.583 25.926 8.93 0.00 32.18 2.71
183 184 8.803201 TGCAAAATTATGATACGTTTGAAACA 57.197 26.923 8.93 0.00 32.18 2.83
190 191 9.515020 CCAGTATTTGCAAAATTATGATACGTT 57.485 29.630 17.19 0.00 0.00 3.99
191 192 8.898761 TCCAGTATTTGCAAAATTATGATACGT 58.101 29.630 17.19 0.00 0.00 3.57
192 193 9.729023 TTCCAGTATTTGCAAAATTATGATACG 57.271 29.630 17.19 8.34 0.00 3.06
202 203 9.868277 CCATACTATTTTCCAGTATTTGCAAAA 57.132 29.630 17.19 2.96 37.15 2.44
203 204 9.030452 ACCATACTATTTTCCAGTATTTGCAAA 57.970 29.630 15.44 15.44 37.15 3.68
204 205 8.588290 ACCATACTATTTTCCAGTATTTGCAA 57.412 30.769 0.00 0.00 37.15 4.08
205 206 8.588290 AACCATACTATTTTCCAGTATTTGCA 57.412 30.769 0.00 0.00 37.15 4.08
206 207 9.869757 AAAACCATACTATTTTCCAGTATTTGC 57.130 29.630 0.00 0.00 37.15 3.68
210 211 9.747898 TGTGAAAACCATACTATTTTCCAGTAT 57.252 29.630 6.92 0.00 41.90 2.12
211 212 9.575868 TTGTGAAAACCATACTATTTTCCAGTA 57.424 29.630 6.92 0.00 41.90 2.74
212 213 8.472007 TTGTGAAAACCATACTATTTTCCAGT 57.528 30.769 6.92 0.00 41.90 4.00
213 214 9.191995 GTTTGTGAAAACCATACTATTTTCCAG 57.808 33.333 6.92 0.00 41.90 3.86
214 215 8.919145 AGTTTGTGAAAACCATACTATTTTCCA 58.081 29.630 6.92 3.06 41.90 3.53
215 216 9.191995 CAGTTTGTGAAAACCATACTATTTTCC 57.808 33.333 6.92 0.98 41.90 3.13
216 217 9.744468 ACAGTTTGTGAAAACCATACTATTTTC 57.256 29.630 3.13 3.13 42.58 2.29
238 239 9.192642 ACAGTTTAAACCTTAAAATACCACAGT 57.807 29.630 14.72 0.00 0.00 3.55
268 269 8.350722 TGTTTGGACGCAAAGTATATGTAAAAA 58.649 29.630 0.00 0.00 0.00 1.94
269 270 7.804129 GTGTTTGGACGCAAAGTATATGTAAAA 59.196 33.333 0.00 0.00 36.30 1.52
270 271 7.173562 AGTGTTTGGACGCAAAGTATATGTAAA 59.826 33.333 0.00 0.00 38.76 2.01
271 272 6.651643 AGTGTTTGGACGCAAAGTATATGTAA 59.348 34.615 0.00 0.00 38.76 2.41
272 273 6.167685 AGTGTTTGGACGCAAAGTATATGTA 58.832 36.000 0.00 0.00 38.76 2.29
273 274 5.001232 AGTGTTTGGACGCAAAGTATATGT 58.999 37.500 0.00 0.00 38.76 2.29
274 275 5.447279 GGAGTGTTTGGACGCAAAGTATATG 60.447 44.000 0.00 0.00 38.76 1.78
275 276 4.634443 GGAGTGTTTGGACGCAAAGTATAT 59.366 41.667 0.00 0.00 38.76 0.86
276 277 3.998341 GGAGTGTTTGGACGCAAAGTATA 59.002 43.478 0.00 0.00 38.76 1.47
277 278 2.812011 GGAGTGTTTGGACGCAAAGTAT 59.188 45.455 0.00 0.00 38.76 2.12
278 279 2.215196 GGAGTGTTTGGACGCAAAGTA 58.785 47.619 0.00 0.00 38.76 2.24
279 280 1.021968 GGAGTGTTTGGACGCAAAGT 58.978 50.000 0.00 0.00 38.76 2.66
280 281 0.041312 CGGAGTGTTTGGACGCAAAG 60.041 55.000 0.00 0.00 38.76 2.77
281 282 0.745128 ACGGAGTGTTTGGACGCAAA 60.745 50.000 0.00 0.00 42.51 3.68
282 283 0.104487 TACGGAGTGTTTGGACGCAA 59.896 50.000 0.00 0.00 45.73 4.85
283 284 0.104487 TTACGGAGTGTTTGGACGCA 59.896 50.000 0.00 0.00 45.73 5.24
284 285 0.509929 GTTACGGAGTGTTTGGACGC 59.490 55.000 0.00 0.00 45.73 5.19
285 286 2.144482 AGTTACGGAGTGTTTGGACG 57.856 50.000 0.00 0.00 45.73 4.79
286 287 2.546789 CCAAGTTACGGAGTGTTTGGAC 59.453 50.000 0.00 0.00 43.93 4.02
287 288 2.435069 TCCAAGTTACGGAGTGTTTGGA 59.565 45.455 0.00 0.00 45.83 3.53
288 289 2.806244 CTCCAAGTTACGGAGTGTTTGG 59.194 50.000 1.78 0.00 45.73 3.28
296 297 2.880443 ACCAGTACTCCAAGTTACGGA 58.120 47.619 0.00 0.00 0.00 4.69
297 298 3.006110 TCAACCAGTACTCCAAGTTACGG 59.994 47.826 0.00 0.00 0.00 4.02
298 299 4.247267 TCAACCAGTACTCCAAGTTACG 57.753 45.455 0.00 0.00 0.00 3.18
299 300 8.788325 AATAATCAACCAGTACTCCAAGTTAC 57.212 34.615 0.00 0.00 0.00 2.50
300 301 9.802039 AAAATAATCAACCAGTACTCCAAGTTA 57.198 29.630 0.00 0.00 0.00 2.24
301 302 8.576442 CAAAATAATCAACCAGTACTCCAAGTT 58.424 33.333 0.00 0.00 0.00 2.66
302 303 7.724061 ACAAAATAATCAACCAGTACTCCAAGT 59.276 33.333 0.00 0.00 0.00 3.16
303 304 8.110860 ACAAAATAATCAACCAGTACTCCAAG 57.889 34.615 0.00 0.00 0.00 3.61
304 305 8.472007 AACAAAATAATCAACCAGTACTCCAA 57.528 30.769 0.00 0.00 0.00 3.53
305 306 8.472007 AAACAAAATAATCAACCAGTACTCCA 57.528 30.769 0.00 0.00 0.00 3.86
306 307 9.758651 AAAAACAAAATAATCAACCAGTACTCC 57.241 29.630 0.00 0.00 0.00 3.85
310 311 9.239002 CGTCAAAAACAAAATAATCAACCAGTA 57.761 29.630 0.00 0.00 0.00 2.74
311 312 7.976734 TCGTCAAAAACAAAATAATCAACCAGT 59.023 29.630 0.00 0.00 0.00 4.00
312 313 8.265998 GTCGTCAAAAACAAAATAATCAACCAG 58.734 33.333 0.00 0.00 0.00 4.00
313 314 7.976734 AGTCGTCAAAAACAAAATAATCAACCA 59.023 29.630 0.00 0.00 0.00 3.67
314 315 8.347729 AGTCGTCAAAAACAAAATAATCAACC 57.652 30.769 0.00 0.00 0.00 3.77
319 320 9.458374 CCAACTAGTCGTCAAAAACAAAATAAT 57.542 29.630 0.00 0.00 0.00 1.28
320 321 7.432838 GCCAACTAGTCGTCAAAAACAAAATAA 59.567 33.333 0.00 0.00 0.00 1.40
321 322 6.913673 GCCAACTAGTCGTCAAAAACAAAATA 59.086 34.615 0.00 0.00 0.00 1.40
322 323 5.746721 GCCAACTAGTCGTCAAAAACAAAAT 59.253 36.000 0.00 0.00 0.00 1.82
323 324 5.096849 GCCAACTAGTCGTCAAAAACAAAA 58.903 37.500 0.00 0.00 0.00 2.44
324 325 4.396790 AGCCAACTAGTCGTCAAAAACAAA 59.603 37.500 0.00 0.00 0.00 2.83
325 326 3.942748 AGCCAACTAGTCGTCAAAAACAA 59.057 39.130 0.00 0.00 0.00 2.83
326 327 3.311322 CAGCCAACTAGTCGTCAAAAACA 59.689 43.478 0.00 0.00 0.00 2.83
327 328 3.848554 GCAGCCAACTAGTCGTCAAAAAC 60.849 47.826 0.00 0.00 0.00 2.43
328 329 2.289547 GCAGCCAACTAGTCGTCAAAAA 59.710 45.455 0.00 0.00 0.00 1.94
329 330 1.871039 GCAGCCAACTAGTCGTCAAAA 59.129 47.619 0.00 0.00 0.00 2.44
330 331 1.070134 AGCAGCCAACTAGTCGTCAAA 59.930 47.619 0.00 0.00 0.00 2.69
331 332 0.679505 AGCAGCCAACTAGTCGTCAA 59.320 50.000 0.00 0.00 0.00 3.18
332 333 0.038251 CAGCAGCCAACTAGTCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
333 334 0.243907 TCAGCAGCCAACTAGTCGTC 59.756 55.000 0.00 0.00 0.00 4.20
334 335 0.898320 ATCAGCAGCCAACTAGTCGT 59.102 50.000 0.00 0.00 0.00 4.34
335 336 1.284657 CATCAGCAGCCAACTAGTCG 58.715 55.000 0.00 0.00 0.00 4.18
336 337 1.065854 ACCATCAGCAGCCAACTAGTC 60.066 52.381 0.00 0.00 0.00 2.59
337 338 0.987294 ACCATCAGCAGCCAACTAGT 59.013 50.000 0.00 0.00 0.00 2.57
338 339 1.065926 TGACCATCAGCAGCCAACTAG 60.066 52.381 0.00 0.00 0.00 2.57
339 340 0.983467 TGACCATCAGCAGCCAACTA 59.017 50.000 0.00 0.00 0.00 2.24
340 341 0.322277 CTGACCATCAGCAGCCAACT 60.322 55.000 0.00 0.00 37.72 3.16
341 342 2.177950 CTGACCATCAGCAGCCAAC 58.822 57.895 0.00 0.00 37.72 3.77
342 343 4.728409 CTGACCATCAGCAGCCAA 57.272 55.556 0.00 0.00 37.72 4.52
372 373 9.444600 AGAAAAGCTCCGACTATATTTAAACAA 57.555 29.630 0.00 0.00 0.00 2.83
381 382 9.745880 CTGTAAAATAGAAAAGCTCCGACTATA 57.254 33.333 0.00 0.00 0.00 1.31
382 383 7.711339 CCTGTAAAATAGAAAAGCTCCGACTAT 59.289 37.037 0.00 0.00 0.00 2.12
383 384 7.039882 CCTGTAAAATAGAAAAGCTCCGACTA 58.960 38.462 0.00 0.00 0.00 2.59
384 385 5.875359 CCTGTAAAATAGAAAAGCTCCGACT 59.125 40.000 0.00 0.00 0.00 4.18
385 386 5.873164 TCCTGTAAAATAGAAAAGCTCCGAC 59.127 40.000 0.00 0.00 0.00 4.79
386 387 6.045072 TCCTGTAAAATAGAAAAGCTCCGA 57.955 37.500 0.00 0.00 0.00 4.55
387 388 6.316390 ACATCCTGTAAAATAGAAAAGCTCCG 59.684 38.462 0.00 0.00 0.00 4.63
388 389 7.336931 TGACATCCTGTAAAATAGAAAAGCTCC 59.663 37.037 0.00 0.00 0.00 4.70
389 390 8.268850 TGACATCCTGTAAAATAGAAAAGCTC 57.731 34.615 0.00 0.00 0.00 4.09
390 391 7.885399 ACTGACATCCTGTAAAATAGAAAAGCT 59.115 33.333 0.00 0.00 0.00 3.74
391 392 8.045176 ACTGACATCCTGTAAAATAGAAAAGC 57.955 34.615 0.00 0.00 0.00 3.51
396 397 8.792633 CCAAAAACTGACATCCTGTAAAATAGA 58.207 33.333 0.00 0.00 0.00 1.98
397 398 7.542130 GCCAAAAACTGACATCCTGTAAAATAG 59.458 37.037 0.00 0.00 0.00 1.73
398 399 7.014711 TGCCAAAAACTGACATCCTGTAAAATA 59.985 33.333 0.00 0.00 0.00 1.40
399 400 6.183360 TGCCAAAAACTGACATCCTGTAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
400 401 5.127845 TGCCAAAAACTGACATCCTGTAAAA 59.872 36.000 0.00 0.00 0.00 1.52
401 402 4.646945 TGCCAAAAACTGACATCCTGTAAA 59.353 37.500 0.00 0.00 0.00 2.01
402 403 4.211125 TGCCAAAAACTGACATCCTGTAA 58.789 39.130 0.00 0.00 0.00 2.41
403 404 3.826524 TGCCAAAAACTGACATCCTGTA 58.173 40.909 0.00 0.00 0.00 2.74
404 405 2.665165 TGCCAAAAACTGACATCCTGT 58.335 42.857 0.00 0.00 0.00 4.00
405 406 3.068590 AGTTGCCAAAAACTGACATCCTG 59.931 43.478 0.00 0.00 38.95 3.86
406 407 3.299503 AGTTGCCAAAAACTGACATCCT 58.700 40.909 0.00 0.00 38.95 3.24
407 408 3.552890 GGAGTTGCCAAAAACTGACATCC 60.553 47.826 0.00 0.00 40.48 3.51
408 409 3.068024 TGGAGTTGCCAAAAACTGACATC 59.932 43.478 0.00 0.00 45.87 3.06
409 410 3.030291 TGGAGTTGCCAAAAACTGACAT 58.970 40.909 0.00 0.00 45.87 3.06
410 411 2.451490 TGGAGTTGCCAAAAACTGACA 58.549 42.857 0.00 0.00 45.87 3.58
420 421 2.203480 GCCCAAGTGGAGTTGCCA 60.203 61.111 0.00 0.00 46.96 4.92
421 422 2.991540 GGCCCAAGTGGAGTTGCC 60.992 66.667 0.00 0.00 37.39 4.52
422 423 0.251165 TAAGGCCCAAGTGGAGTTGC 60.251 55.000 0.00 0.00 37.39 4.17
423 424 1.614317 CCTAAGGCCCAAGTGGAGTTG 60.614 57.143 0.00 0.00 37.39 3.16
424 425 0.698818 CCTAAGGCCCAAGTGGAGTT 59.301 55.000 0.00 0.00 37.39 3.01
425 426 1.853250 GCCTAAGGCCCAAGTGGAGT 61.853 60.000 0.00 0.00 44.06 3.85
426 427 1.077429 GCCTAAGGCCCAAGTGGAG 60.077 63.158 0.00 0.00 44.06 3.86
427 428 3.087065 GCCTAAGGCCCAAGTGGA 58.913 61.111 0.00 0.00 44.06 4.02
437 438 0.179045 CCAGATCAACGGGCCTAAGG 60.179 60.000 0.84 0.00 0.00 2.69
438 439 0.541863 ACCAGATCAACGGGCCTAAG 59.458 55.000 0.84 0.00 37.36 2.18
439 440 0.539986 GACCAGATCAACGGGCCTAA 59.460 55.000 0.84 0.00 37.36 2.69
440 441 1.335132 GGACCAGATCAACGGGCCTA 61.335 60.000 12.41 0.00 37.36 3.93
441 442 2.670148 GGACCAGATCAACGGGCCT 61.670 63.158 12.41 0.00 37.36 5.19
442 443 2.124695 GGACCAGATCAACGGGCC 60.125 66.667 5.06 5.06 37.36 5.80
443 444 2.511600 CGGACCAGATCAACGGGC 60.512 66.667 0.00 0.00 37.36 6.13
444 445 2.511600 GCGGACCAGATCAACGGG 60.512 66.667 0.00 0.00 39.69 5.28
445 446 2.829043 TTCGCGGACCAGATCAACGG 62.829 60.000 6.13 0.00 0.00 4.44
446 447 1.011968 TTTCGCGGACCAGATCAACG 61.012 55.000 6.13 0.00 0.00 4.10
447 448 0.442699 GTTTCGCGGACCAGATCAAC 59.557 55.000 6.13 0.00 0.00 3.18
448 449 1.011968 CGTTTCGCGGACCAGATCAA 61.012 55.000 6.13 0.00 36.85 2.57
449 450 1.445410 CGTTTCGCGGACCAGATCA 60.445 57.895 6.13 0.00 36.85 2.92
450 451 0.734942 TTCGTTTCGCGGACCAGATC 60.735 55.000 6.13 0.00 41.72 2.75
451 452 0.320073 TTTCGTTTCGCGGACCAGAT 60.320 50.000 6.13 0.00 41.72 2.90
452 453 0.530211 TTTTCGTTTCGCGGACCAGA 60.530 50.000 6.13 0.00 41.72 3.86
453 454 0.305313 TTTTTCGTTTCGCGGACCAG 59.695 50.000 6.13 0.00 41.72 4.00
454 455 2.391469 TTTTTCGTTTCGCGGACCA 58.609 47.368 6.13 0.00 41.72 4.02
526 537 7.287061 TCCCATATTGATAGGTTTTGACGATT 58.713 34.615 0.00 0.00 0.00 3.34
527 538 6.837312 TCCCATATTGATAGGTTTTGACGAT 58.163 36.000 0.00 0.00 0.00 3.73
529 540 6.936900 AGATCCCATATTGATAGGTTTTGACG 59.063 38.462 0.00 0.00 0.00 4.35
532 543 9.799106 AACTAGATCCCATATTGATAGGTTTTG 57.201 33.333 0.00 0.00 0.00 2.44
550 561 7.980099 TCGGGTTGAGATCTTTAAAACTAGATC 59.020 37.037 0.00 6.74 44.54 2.75
570 581 1.064825 ACTGTTGGATTCCTCGGGTT 58.935 50.000 3.95 0.00 0.00 4.11
587 598 6.238374 CGTCCAAATCTTGTACTGTTTTCACT 60.238 38.462 0.00 0.00 0.00 3.41
590 601 4.909880 GCGTCCAAATCTTGTACTGTTTTC 59.090 41.667 0.00 0.00 0.00 2.29
593 604 3.250040 GTGCGTCCAAATCTTGTACTGTT 59.750 43.478 0.00 0.00 0.00 3.16
595 606 2.159841 CGTGCGTCCAAATCTTGTACTG 60.160 50.000 0.00 0.00 0.00 2.74
596 607 2.066262 CGTGCGTCCAAATCTTGTACT 58.934 47.619 0.00 0.00 0.00 2.73
599 610 1.808411 ATCGTGCGTCCAAATCTTGT 58.192 45.000 0.00 0.00 0.00 3.16
601 612 4.693566 TCTTAAATCGTGCGTCCAAATCTT 59.306 37.500 0.00 0.00 0.00 2.40
608 619 4.084223 TGTTTTCTCTTAAATCGTGCGTCC 60.084 41.667 0.00 0.00 0.00 4.79
660 671 2.478547 TCGCAACCCGAAAGTTTTTC 57.521 45.000 0.00 0.00 44.21 2.29
669 680 1.593209 GTCACTTGTCGCAACCCGA 60.593 57.895 0.00 0.00 45.15 5.14
671 682 1.092921 TGTGTCACTTGTCGCAACCC 61.093 55.000 4.27 0.00 0.00 4.11
674 685 0.307453 GCATGTGTCACTTGTCGCAA 59.693 50.000 17.44 0.00 0.00 4.85
675 686 0.813210 TGCATGTGTCACTTGTCGCA 60.813 50.000 17.44 8.86 0.00 5.10
678 689 0.110509 CGCTGCATGTGTCACTTGTC 60.111 55.000 17.44 11.53 0.00 3.18
706 717 2.157834 TCACCACCACATGTTACGAC 57.842 50.000 0.00 0.00 0.00 4.34
708 719 2.875933 ACTTTCACCACCACATGTTACG 59.124 45.455 0.00 0.00 0.00 3.18
710 721 3.892284 ACACTTTCACCACCACATGTTA 58.108 40.909 0.00 0.00 0.00 2.41
720 731 5.013547 TCTTTCCAAAGAACACTTTCACCA 58.986 37.500 0.00 0.00 41.75 4.17
731 742 8.980481 AATTGAGAAGTACTCTTTCCAAAGAA 57.020 30.769 0.00 0.00 43.84 2.52
733 744 9.495572 ACTAATTGAGAAGTACTCTTTCCAAAG 57.504 33.333 0.00 0.00 45.13 2.77
741 752 8.740906 TCGAAATCACTAATTGAGAAGTACTCT 58.259 33.333 0.00 0.00 45.13 3.24
742 753 8.912787 TCGAAATCACTAATTGAGAAGTACTC 57.087 34.615 0.00 0.00 45.11 2.59
743 754 9.360093 CTTCGAAATCACTAATTGAGAAGTACT 57.640 33.333 0.00 0.00 37.77 2.73
744 755 9.355215 TCTTCGAAATCACTAATTGAGAAGTAC 57.645 33.333 0.00 0.00 39.80 2.73
745 756 9.923143 TTCTTCGAAATCACTAATTGAGAAGTA 57.077 29.630 0.00 4.45 39.80 2.24
746 757 8.833231 TTCTTCGAAATCACTAATTGAGAAGT 57.167 30.769 0.00 0.00 39.80 3.01
747 758 8.930760 ACTTCTTCGAAATCACTAATTGAGAAG 58.069 33.333 11.25 11.25 39.99 2.85
748 759 8.833231 ACTTCTTCGAAATCACTAATTGAGAA 57.167 30.769 0.00 0.00 37.77 2.87
749 760 8.712363 CAACTTCTTCGAAATCACTAATTGAGA 58.288 33.333 0.00 0.00 37.77 3.27
750 761 7.959651 CCAACTTCTTCGAAATCACTAATTGAG 59.040 37.037 0.00 0.00 37.77 3.02
751 762 7.094805 CCCAACTTCTTCGAAATCACTAATTGA 60.095 37.037 0.00 0.00 39.11 2.57
752 763 7.023575 CCCAACTTCTTCGAAATCACTAATTG 58.976 38.462 0.00 0.00 0.00 2.32
753 764 6.349363 GCCCAACTTCTTCGAAATCACTAATT 60.349 38.462 0.00 0.00 0.00 1.40
754 765 5.123979 GCCCAACTTCTTCGAAATCACTAAT 59.876 40.000 0.00 0.00 0.00 1.73
755 766 4.454504 GCCCAACTTCTTCGAAATCACTAA 59.545 41.667 0.00 0.00 0.00 2.24
756 767 4.000988 GCCCAACTTCTTCGAAATCACTA 58.999 43.478 0.00 0.00 0.00 2.74
757 768 2.814336 GCCCAACTTCTTCGAAATCACT 59.186 45.455 0.00 0.00 0.00 3.41
758 769 2.814336 AGCCCAACTTCTTCGAAATCAC 59.186 45.455 0.00 0.00 0.00 3.06
759 770 3.140325 AGCCCAACTTCTTCGAAATCA 57.860 42.857 0.00 0.00 0.00 2.57
777 788 5.723295 TGAAAGGCCTTGAAAATCAATAGC 58.277 37.500 21.33 6.68 35.59 2.97
780 791 6.117975 ACATGAAAGGCCTTGAAAATCAAT 57.882 33.333 21.33 8.44 35.59 2.57
851 862 6.435428 CGTAAATTAGCCCATTAAATTCGCT 58.565 36.000 0.00 0.00 0.00 4.93
867 881 9.403110 GATAAACTCTTCGATAGCCGTAAATTA 57.597 33.333 0.00 0.00 39.75 1.40
998 1051 3.160047 CTGCCTCCGCCTCCATCT 61.160 66.667 0.00 0.00 0.00 2.90
1173 1238 0.101399 CCTCCTCATCCTCACGTTCG 59.899 60.000 0.00 0.00 0.00 3.95
1196 1261 4.501714 GGTACCGCATCGCCACGA 62.502 66.667 0.00 0.00 41.13 4.35
1321 1386 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1322 1387 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1323 1388 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1324 1389 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1325 1390 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1326 1391 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1327 1392 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1328 1393 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1329 1394 7.865385 CGAAGAAGAAGAAGAAGAAGAAGAAGA 59.135 37.037 0.00 0.00 0.00 2.87
1330 1395 7.865385 TCGAAGAAGAAGAAGAAGAAGAAGAAG 59.135 37.037 0.00 0.00 0.00 2.85
1331 1396 7.717568 TCGAAGAAGAAGAAGAAGAAGAAGAA 58.282 34.615 0.00 0.00 0.00 2.52
1332 1397 7.278461 TCGAAGAAGAAGAAGAAGAAGAAGA 57.722 36.000 0.00 0.00 0.00 2.87
1333 1398 8.532977 AATCGAAGAAGAAGAAGAAGAAGAAG 57.467 34.615 0.00 0.00 43.58 2.85
1334 1399 7.600752 GGAATCGAAGAAGAAGAAGAAGAAGAA 59.399 37.037 0.00 0.00 43.58 2.52
1335 1400 7.093992 GGAATCGAAGAAGAAGAAGAAGAAGA 58.906 38.462 0.00 0.00 43.58 2.87
1477 1551 1.134640 ACGGCATTAGCATAACCGACA 60.135 47.619 6.76 0.00 46.71 4.35
1694 1770 4.406648 TGCCTATGTGTGTGGAGATTAG 57.593 45.455 0.00 0.00 0.00 1.73
1758 1836 5.528043 TCACCAACAAAAATATGCACACT 57.472 34.783 0.00 0.00 0.00 3.55
1760 1838 6.519382 TGAATCACCAACAAAAATATGCACA 58.481 32.000 0.00 0.00 0.00 4.57
1761 1839 7.599630 ATGAATCACCAACAAAAATATGCAC 57.400 32.000 0.00 0.00 0.00 4.57
1831 1909 4.468095 ACCGATTTCAAAGAAGTTCGTG 57.532 40.909 0.00 0.34 0.00 4.35
1942 2020 3.570540 ACAGGCTCAGCTATCTGTGATA 58.429 45.455 6.27 0.00 41.10 2.15
2352 2490 2.848071 ACCCCTTGTTTCCGGTGTATAT 59.152 45.455 0.00 0.00 0.00 0.86
2360 2498 2.564062 TCTAGTGTACCCCTTGTTTCCG 59.436 50.000 0.00 0.00 0.00 4.30
2520 2763 7.123997 TCTGCATGAAAAGGAATAAAATAGGCA 59.876 33.333 0.00 0.00 0.00 4.75
2604 2848 2.537401 GTTACGCCTCACTCCATACAC 58.463 52.381 0.00 0.00 0.00 2.90
2609 2853 0.541063 TCTGGTTACGCCTCACTCCA 60.541 55.000 0.00 0.00 38.35 3.86
2616 2860 0.756903 ACTTGTGTCTGGTTACGCCT 59.243 50.000 0.00 0.00 38.35 5.52
2627 2871 6.539649 TGAAAACATAGCTACACTTGTGTC 57.460 37.500 9.85 0.00 0.00 3.67
3183 3430 7.986320 ACCAAACATGAAAATTCAGTCAAATGA 59.014 29.630 0.00 0.00 41.08 2.57
3189 3436 9.696917 AAGATAACCAAACATGAAAATTCAGTC 57.303 29.630 0.00 0.00 41.08 3.51
3239 3486 7.761409 TCCTGCATTATGATGTTTCAAAGTAC 58.239 34.615 0.00 0.00 34.96 2.73
3375 3622 1.265635 CCTCGATGACTAGAAGGCTCG 59.734 57.143 0.00 0.00 0.00 5.03
3420 3667 1.244019 GCAATGAACTCCTTGGCGGT 61.244 55.000 0.00 0.00 0.00 5.68
3517 3764 1.197721 GATCCCTCAACAACTTGCACG 59.802 52.381 0.00 0.00 0.00 5.34
3587 3842 2.932855 AGCACCATCTCCAGATCATG 57.067 50.000 0.00 0.00 31.21 3.07
3668 3923 1.653679 CGCTTCGACAGAAACAACACG 60.654 52.381 0.00 0.00 35.71 4.49
3861 4116 6.267817 CCACATATGCCAAACTGATTTACTG 58.732 40.000 1.58 0.00 0.00 2.74
3950 4445 6.809689 GCAAAGTAACAACAGTACACCTTTTT 59.190 34.615 0.00 0.00 0.00 1.94
3951 4446 6.152154 AGCAAAGTAACAACAGTACACCTTTT 59.848 34.615 0.00 0.00 0.00 2.27
3952 4447 5.650703 AGCAAAGTAACAACAGTACACCTTT 59.349 36.000 0.00 0.00 0.00 3.11
3953 4448 5.190677 AGCAAAGTAACAACAGTACACCTT 58.809 37.500 0.00 0.00 0.00 3.50
3954 4449 4.777463 AGCAAAGTAACAACAGTACACCT 58.223 39.130 0.00 0.00 0.00 4.00
3955 4450 6.425721 TCATAGCAAAGTAACAACAGTACACC 59.574 38.462 0.00 0.00 0.00 4.16
3956 4451 7.416154 TCATAGCAAAGTAACAACAGTACAC 57.584 36.000 0.00 0.00 0.00 2.90
3957 4452 8.503196 CATTCATAGCAAAGTAACAACAGTACA 58.497 33.333 0.00 0.00 0.00 2.90
3958 4453 8.504005 ACATTCATAGCAAAGTAACAACAGTAC 58.496 33.333 0.00 0.00 0.00 2.73
3959 4454 8.615878 ACATTCATAGCAAAGTAACAACAGTA 57.384 30.769 0.00 0.00 0.00 2.74
3960 4455 7.510549 ACATTCATAGCAAAGTAACAACAGT 57.489 32.000 0.00 0.00 0.00 3.55
3961 4456 7.862372 ACAACATTCATAGCAAAGTAACAACAG 59.138 33.333 0.00 0.00 0.00 3.16
3962 4457 7.711846 ACAACATTCATAGCAAAGTAACAACA 58.288 30.769 0.00 0.00 0.00 3.33
3963 4458 9.329913 CTACAACATTCATAGCAAAGTAACAAC 57.670 33.333 0.00 0.00 0.00 3.32
3964 4459 9.278978 TCTACAACATTCATAGCAAAGTAACAA 57.721 29.630 0.00 0.00 0.00 2.83
3965 4460 8.840833 TCTACAACATTCATAGCAAAGTAACA 57.159 30.769 0.00 0.00 0.00 2.41
3966 4461 9.151471 TCTCTACAACATTCATAGCAAAGTAAC 57.849 33.333 0.00 0.00 0.00 2.50
3967 4462 9.719355 TTCTCTACAACATTCATAGCAAAGTAA 57.281 29.630 0.00 0.00 0.00 2.24
3968 4463 9.890629 ATTCTCTACAACATTCATAGCAAAGTA 57.109 29.630 0.00 0.00 0.00 2.24
3997 4492 4.625963 ACCCTTAGCTAGTTTCCAGAGAT 58.374 43.478 0.00 0.00 0.00 2.75
4123 4996 5.950544 TTGCTAAGATTTAGACCTGCCTA 57.049 39.130 0.21 0.00 0.00 3.93
4239 5273 1.400846 CGCTTGATGCTGCAAGAGAAT 59.599 47.619 18.96 0.00 46.31 2.40
4242 5276 0.179197 CACGCTTGATGCTGCAAGAG 60.179 55.000 18.96 17.74 46.31 2.85
4244 5278 0.453950 GACACGCTTGATGCTGCAAG 60.454 55.000 6.36 12.79 46.18 4.01
4248 5282 1.128136 CTTCTGACACGCTTGATGCTG 59.872 52.381 0.00 0.00 40.11 4.41
4250 5284 1.432514 TCTTCTGACACGCTTGATGC 58.567 50.000 0.00 0.00 38.57 3.91
4251 5285 2.159734 GCTTCTTCTGACACGCTTGATG 60.160 50.000 0.00 0.00 0.00 3.07
4252 5286 2.072298 GCTTCTTCTGACACGCTTGAT 58.928 47.619 0.00 0.00 0.00 2.57
4253 5287 1.502231 GCTTCTTCTGACACGCTTGA 58.498 50.000 0.00 0.00 0.00 3.02
4259 5293 1.658095 GATGCTCGCTTCTTCTGACAC 59.342 52.381 0.00 0.00 0.00 3.67
4261 5295 0.919981 CGATGCTCGCTTCTTCTGAC 59.080 55.000 3.75 0.00 31.14 3.51
4263 5297 0.644331 CACGATGCTCGCTTCTTCTG 59.356 55.000 5.63 0.00 45.12 3.02
4265 5299 0.458543 TCCACGATGCTCGCTTCTTC 60.459 55.000 5.63 0.00 45.12 2.87
4266 5300 0.737715 GTCCACGATGCTCGCTTCTT 60.738 55.000 5.63 0.00 45.12 2.52
4267 5301 1.153745 GTCCACGATGCTCGCTTCT 60.154 57.895 5.63 0.00 45.12 2.85
4268 5302 1.446099 TGTCCACGATGCTCGCTTC 60.446 57.895 5.63 0.00 45.12 3.86
4269 5303 1.738099 GTGTCCACGATGCTCGCTT 60.738 57.895 5.63 0.00 45.12 4.68
4270 5304 2.125912 GTGTCCACGATGCTCGCT 60.126 61.111 5.63 0.00 45.12 4.93
4271 5305 1.811266 ATGTGTCCACGATGCTCGC 60.811 57.895 5.63 0.00 45.12 5.03
4273 5307 1.709147 GCCATGTGTCCACGATGCTC 61.709 60.000 0.00 0.00 0.00 4.26
4275 5309 2.764314 GGCCATGTGTCCACGATGC 61.764 63.158 0.00 0.00 0.00 3.91
4276 5310 2.114670 GGGCCATGTGTCCACGATG 61.115 63.158 4.39 0.00 0.00 3.84
4277 5311 1.925285 ATGGGCCATGTGTCCACGAT 61.925 55.000 20.49 0.00 32.90 3.73
4279 5313 2.045045 ATGGGCCATGTGTCCACG 60.045 61.111 20.49 0.00 32.90 4.94
4280 5314 1.754234 GGATGGGCCATGTGTCCAC 60.754 63.158 26.77 7.21 36.34 4.02
4281 5315 2.682846 GGATGGGCCATGTGTCCA 59.317 61.111 26.77 9.54 36.34 4.02
4282 5316 2.123726 GGGATGGGCCATGTGTCC 60.124 66.667 26.77 19.73 38.95 4.02
4283 5317 2.123726 GGGGATGGGCCATGTGTC 60.124 66.667 26.77 10.41 38.95 3.67
4287 5321 4.837797 TTGCGGGGATGGGCCATG 62.838 66.667 26.77 10.75 38.95 3.66
4288 5322 3.615480 TTTTGCGGGGATGGGCCAT 62.615 57.895 21.39 21.39 38.95 4.40
4289 5323 3.835382 TTTTTGCGGGGATGGGCCA 62.835 57.895 9.61 9.61 38.95 5.36
4290 5324 3.000233 TTTTTGCGGGGATGGGCC 61.000 61.111 0.00 0.00 0.00 5.80
4291 5325 1.948721 CTCTTTTTGCGGGGATGGGC 61.949 60.000 0.00 0.00 0.00 5.36
4292 5326 1.322538 CCTCTTTTTGCGGGGATGGG 61.323 60.000 0.00 0.00 0.00 4.00
4293 5327 0.323360 TCCTCTTTTTGCGGGGATGG 60.323 55.000 0.00 0.00 0.00 3.51
4295 5329 2.532250 ATTCCTCTTTTTGCGGGGAT 57.468 45.000 0.00 0.00 0.00 3.85
4296 5330 2.302587 AATTCCTCTTTTTGCGGGGA 57.697 45.000 0.00 0.00 0.00 4.81
4297 5331 2.159435 CGTAATTCCTCTTTTTGCGGGG 60.159 50.000 0.00 0.00 0.00 5.73
4298 5332 2.486592 ACGTAATTCCTCTTTTTGCGGG 59.513 45.455 0.00 0.00 33.61 6.13
4299 5333 3.824414 ACGTAATTCCTCTTTTTGCGG 57.176 42.857 0.00 0.00 33.61 5.69
4300 5334 5.263185 CCATACGTAATTCCTCTTTTTGCG 58.737 41.667 0.00 0.00 35.12 4.85
4351 5467 3.163594 CGCGTGATTTCTGGATTCAAAC 58.836 45.455 0.00 0.00 0.00 2.93
4375 5491 4.209288 CCGATTGGCTAGTGATTAAACTCG 59.791 45.833 0.00 0.00 0.00 4.18
4506 5622 3.303938 TGGAGGGTTTGATTTCTTGCAA 58.696 40.909 0.00 0.00 0.00 4.08
4533 5649 6.585322 GCAGGCATTGATTTCTTGCTATAATC 59.415 38.462 0.00 0.00 36.62 1.75
4587 5704 7.615403 ACAGTAGATGGTATATATGCACAAGG 58.385 38.462 3.10 0.00 0.00 3.61
4593 5710 8.520351 TGTGTGTACAGTAGATGGTATATATGC 58.480 37.037 0.00 0.00 31.91 3.14
4610 5727 1.003112 GGCCGGGATTGTGTGTACA 60.003 57.895 2.18 0.00 34.31 2.90
4642 5759 2.336667 CCCATGGTTTTCGATGTTTGC 58.663 47.619 11.73 0.00 34.85 3.68
4765 5884 1.370172 GTAGTCGTAGCCGATGCCG 60.370 63.158 0.00 0.00 46.30 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.