Multiple sequence alignment - TraesCS2D01G478600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G478600 chr2D 100.000 2446 0 0 1 2446 579964467 579962022 0.000000e+00 4518.0
1 TraesCS2D01G478600 chr2A 82.370 1679 156 72 229 1840 717820127 717818522 0.000000e+00 1332.0
2 TraesCS2D01G478600 chr2A 94.915 236 9 1 2211 2446 717818262 717818030 1.380000e-97 366.0
3 TraesCS2D01G478600 chr2A 93.956 182 6 2 1809 1985 717818522 717818341 1.110000e-68 270.0
4 TraesCS2D01G478600 chr2A 89.552 134 12 2 1990 2122 416014161 416014029 4.180000e-38 169.0
5 TraesCS2D01G478600 chr5D 76.754 727 86 41 992 1672 378329183 378329872 1.810000e-86 329.0
6 TraesCS2D01G478600 chr5D 76.330 752 95 50 992 1696 80201019 80201734 2.350000e-85 326.0
7 TraesCS2D01G478600 chr5D 76.133 750 100 51 992 1696 296179837 296179122 1.090000e-83 320.0
8 TraesCS2D01G478600 chr5D 76.228 753 94 55 992 1696 559441869 559441154 1.090000e-83 320.0
9 TraesCS2D01G478600 chr1D 76.494 753 84 58 992 1700 432201761 432202464 8.440000e-85 324.0
10 TraesCS2D01G478600 chr1A 75.990 783 88 56 957 1666 530726252 530727007 1.830000e-81 313.0
11 TraesCS2D01G478600 chr1B 79.713 488 54 25 994 1447 583684637 583685113 6.570000e-81 311.0
12 TraesCS2D01G478600 chr1B 96.970 33 1 0 1536 1568 583685226 583685258 3.400000e-04 56.5
13 TraesCS2D01G478600 chr6B 92.958 142 10 0 1987 2128 288414108 288414249 8.860000e-50 207.0
14 TraesCS2D01G478600 chr5A 92.647 136 10 0 1986 2121 210626368 210626233 1.920000e-46 196.0
15 TraesCS2D01G478600 chr7A 95.161 124 5 1 1985 2108 96555467 96555345 6.900000e-46 195.0
16 TraesCS2D01G478600 chr4A 90.476 147 14 0 1982 2128 500133341 500133487 6.900000e-46 195.0
17 TraesCS2D01G478600 chr3A 90.909 143 11 2 1986 2127 63193011 63192870 8.930000e-45 191.0
18 TraesCS2D01G478600 chr3A 88.889 144 5 4 1986 2128 683289681 683289548 1.500000e-37 167.0
19 TraesCS2D01G478600 chr3D 90.244 123 9 3 2006 2127 50014440 50014320 9.050000e-35 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G478600 chr2D 579962022 579964467 2445 True 4518 4518 100.000000 1 2446 1 chr2D.!!$R1 2445
1 TraesCS2D01G478600 chr2A 717818030 717820127 2097 True 656 1332 90.413667 229 2446 3 chr2A.!!$R2 2217
2 TraesCS2D01G478600 chr5D 378329183 378329872 689 False 329 329 76.754000 992 1672 1 chr5D.!!$F2 680
3 TraesCS2D01G478600 chr5D 80201019 80201734 715 False 326 326 76.330000 992 1696 1 chr5D.!!$F1 704
4 TraesCS2D01G478600 chr5D 296179122 296179837 715 True 320 320 76.133000 992 1696 1 chr5D.!!$R1 704
5 TraesCS2D01G478600 chr5D 559441154 559441869 715 True 320 320 76.228000 992 1696 1 chr5D.!!$R2 704
6 TraesCS2D01G478600 chr1D 432201761 432202464 703 False 324 324 76.494000 992 1700 1 chr1D.!!$F1 708
7 TraesCS2D01G478600 chr1A 530726252 530727007 755 False 313 313 75.990000 957 1666 1 chr1A.!!$F1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.027586 GTGCGACGGAAATACATGCC 59.972 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1904 0.107508 AAGTGCAGGCGATGTATGCT 60.108 50.0 0.0 0.0 40.62 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.786516 TTTCCTTGGACGTGGAAAAAC 57.213 42.857 13.71 0.00 45.81 2.43
22 23 2.097791 TTTCCTTGGACGTGGAAAAACG 59.902 45.455 13.71 0.00 45.81 3.60
23 24 5.572958 TTTCCTTGGACGTGGAAAAACGC 62.573 47.826 13.71 0.00 45.81 4.84
29 30 2.612200 CGTGGAAAAACGCTCTCCA 58.388 52.632 0.00 0.00 36.65 3.86
30 31 1.156736 CGTGGAAAAACGCTCTCCAT 58.843 50.000 0.15 0.00 41.21 3.41
31 32 1.535462 CGTGGAAAAACGCTCTCCATT 59.465 47.619 0.15 0.00 41.21 3.16
32 33 2.739913 CGTGGAAAAACGCTCTCCATTA 59.260 45.455 0.15 0.00 41.21 1.90
33 34 3.187637 CGTGGAAAAACGCTCTCCATTAA 59.812 43.478 0.15 0.00 41.21 1.40
34 35 4.473199 GTGGAAAAACGCTCTCCATTAAC 58.527 43.478 0.15 0.00 41.21 2.01
35 36 3.187637 TGGAAAAACGCTCTCCATTAACG 59.812 43.478 0.00 0.00 34.26 3.18
36 37 3.434299 GGAAAAACGCTCTCCATTAACGA 59.566 43.478 0.00 0.00 0.00 3.85
37 38 4.083696 GGAAAAACGCTCTCCATTAACGAA 60.084 41.667 0.00 0.00 0.00 3.85
38 39 4.400036 AAAACGCTCTCCATTAACGAAC 57.600 40.909 0.00 0.00 0.00 3.95
39 40 3.314541 AACGCTCTCCATTAACGAACT 57.685 42.857 0.00 0.00 0.00 3.01
40 41 2.607187 ACGCTCTCCATTAACGAACTG 58.393 47.619 0.00 0.00 0.00 3.16
41 42 1.927174 CGCTCTCCATTAACGAACTGG 59.073 52.381 0.00 0.00 0.00 4.00
42 43 2.674177 CGCTCTCCATTAACGAACTGGT 60.674 50.000 0.00 0.00 0.00 4.00
43 44 2.673368 GCTCTCCATTAACGAACTGGTG 59.327 50.000 0.00 0.00 0.00 4.17
44 45 2.673368 CTCTCCATTAACGAACTGGTGC 59.327 50.000 0.00 0.00 0.00 5.01
45 46 2.037902 TCTCCATTAACGAACTGGTGCA 59.962 45.455 0.00 0.00 0.00 4.57
46 47 2.416547 CTCCATTAACGAACTGGTGCAG 59.583 50.000 0.00 0.00 37.52 4.41
47 48 1.135689 CCATTAACGAACTGGTGCAGC 60.136 52.381 9.47 9.47 34.37 5.25
48 49 1.535028 CATTAACGAACTGGTGCAGCA 59.465 47.619 19.03 19.03 34.37 4.41
49 50 1.225855 TTAACGAACTGGTGCAGCAG 58.774 50.000 37.35 37.35 34.37 4.24
50 51 0.391228 TAACGAACTGGTGCAGCAGA 59.609 50.000 43.33 23.07 34.37 4.26
51 52 0.463654 AACGAACTGGTGCAGCAGAA 60.464 50.000 43.33 13.42 34.37 3.02
52 53 0.250467 ACGAACTGGTGCAGCAGAAT 60.250 50.000 43.33 32.34 34.37 2.40
53 54 0.877071 CGAACTGGTGCAGCAGAATT 59.123 50.000 43.33 30.88 34.37 2.17
54 55 1.400629 CGAACTGGTGCAGCAGAATTG 60.401 52.381 43.33 30.81 34.37 2.32
66 67 3.302365 GCAGAATTGCTAGCAACCAAA 57.698 42.857 31.51 10.64 46.95 3.28
67 68 2.989166 GCAGAATTGCTAGCAACCAAAC 59.011 45.455 31.51 19.20 46.95 2.93
68 69 3.578688 CAGAATTGCTAGCAACCAAACC 58.421 45.455 31.51 16.05 38.88 3.27
69 70 3.256631 CAGAATTGCTAGCAACCAAACCT 59.743 43.478 31.51 17.80 38.88 3.50
70 71 3.256631 AGAATTGCTAGCAACCAAACCTG 59.743 43.478 31.51 0.00 38.88 4.00
71 72 2.356665 TTGCTAGCAACCAAACCTGA 57.643 45.000 26.06 0.00 0.00 3.86
72 73 2.356665 TGCTAGCAACCAAACCTGAA 57.643 45.000 16.84 0.00 0.00 3.02
73 74 2.660572 TGCTAGCAACCAAACCTGAAA 58.339 42.857 16.84 0.00 0.00 2.69
74 75 2.360801 TGCTAGCAACCAAACCTGAAAC 59.639 45.455 16.84 0.00 0.00 2.78
75 76 2.360801 GCTAGCAACCAAACCTGAAACA 59.639 45.455 10.63 0.00 0.00 2.83
76 77 3.181480 GCTAGCAACCAAACCTGAAACAA 60.181 43.478 10.63 0.00 0.00 2.83
77 78 3.971245 AGCAACCAAACCTGAAACAAA 57.029 38.095 0.00 0.00 0.00 2.83
78 79 3.860641 AGCAACCAAACCTGAAACAAAG 58.139 40.909 0.00 0.00 0.00 2.77
79 80 3.260632 AGCAACCAAACCTGAAACAAAGT 59.739 39.130 0.00 0.00 0.00 2.66
80 81 4.464597 AGCAACCAAACCTGAAACAAAGTA 59.535 37.500 0.00 0.00 0.00 2.24
81 82 4.803613 GCAACCAAACCTGAAACAAAGTAG 59.196 41.667 0.00 0.00 0.00 2.57
82 83 5.348164 CAACCAAACCTGAAACAAAGTAGG 58.652 41.667 0.00 0.00 36.39 3.18
83 84 3.383505 ACCAAACCTGAAACAAAGTAGGC 59.616 43.478 0.00 0.00 33.57 3.93
84 85 3.383185 CCAAACCTGAAACAAAGTAGGCA 59.617 43.478 0.00 0.00 33.57 4.75
85 86 4.039124 CCAAACCTGAAACAAAGTAGGCAT 59.961 41.667 0.00 0.00 33.57 4.40
86 87 5.242838 CCAAACCTGAAACAAAGTAGGCATA 59.757 40.000 0.00 0.00 33.57 3.14
87 88 6.071391 CCAAACCTGAAACAAAGTAGGCATAT 60.071 38.462 0.00 0.00 33.57 1.78
88 89 6.515272 AACCTGAAACAAAGTAGGCATATG 57.485 37.500 0.00 0.00 33.57 1.78
89 90 4.399303 ACCTGAAACAAAGTAGGCATATGC 59.601 41.667 19.79 19.79 41.14 3.14
90 91 4.641989 CCTGAAACAAAGTAGGCATATGCT 59.358 41.667 26.12 14.86 41.70 3.79
91 92 5.126061 CCTGAAACAAAGTAGGCATATGCTT 59.874 40.000 26.12 21.74 41.70 3.91
92 93 6.194796 TGAAACAAAGTAGGCATATGCTTC 57.805 37.500 26.12 17.81 41.70 3.86
93 94 5.709631 TGAAACAAAGTAGGCATATGCTTCA 59.290 36.000 26.12 19.91 41.70 3.02
94 95 6.377996 TGAAACAAAGTAGGCATATGCTTCAT 59.622 34.615 26.12 12.84 41.70 2.57
95 96 6.382869 AACAAAGTAGGCATATGCTTCATC 57.617 37.500 26.12 13.12 41.70 2.92
96 97 4.823989 ACAAAGTAGGCATATGCTTCATCC 59.176 41.667 26.12 9.30 41.70 3.51
97 98 4.712051 AAGTAGGCATATGCTTCATCCA 57.288 40.909 26.12 1.19 41.70 3.41
98 99 4.712051 AGTAGGCATATGCTTCATCCAA 57.288 40.909 26.12 0.42 41.70 3.53
99 100 5.052693 AGTAGGCATATGCTTCATCCAAA 57.947 39.130 26.12 0.00 41.70 3.28
100 101 5.638133 AGTAGGCATATGCTTCATCCAAAT 58.362 37.500 26.12 0.00 41.70 2.32
101 102 6.782986 AGTAGGCATATGCTTCATCCAAATA 58.217 36.000 26.12 0.00 41.70 1.40
102 103 6.883217 AGTAGGCATATGCTTCATCCAAATAG 59.117 38.462 26.12 0.00 41.70 1.73
103 104 5.638133 AGGCATATGCTTCATCCAAATAGT 58.362 37.500 26.12 0.00 41.70 2.12
104 105 5.475909 AGGCATATGCTTCATCCAAATAGTG 59.524 40.000 26.12 0.00 41.70 2.74
105 106 5.336213 GGCATATGCTTCATCCAAATAGTGG 60.336 44.000 26.12 0.00 44.54 4.00
115 116 2.496899 CAAATAGTGGAGGGCACAGT 57.503 50.000 0.00 0.00 0.00 3.55
116 117 2.795329 CAAATAGTGGAGGGCACAGTT 58.205 47.619 0.00 0.00 0.00 3.16
117 118 2.489329 CAAATAGTGGAGGGCACAGTTG 59.511 50.000 0.00 0.00 0.00 3.16
132 133 5.125100 CACAGTTGCATGATAACCAAACT 57.875 39.130 0.00 0.00 0.00 2.66
133 134 4.919168 CACAGTTGCATGATAACCAAACTG 59.081 41.667 10.84 10.84 0.00 3.16
134 135 3.922240 CAGTTGCATGATAACCAAACTGC 59.078 43.478 0.00 0.00 0.00 4.40
135 136 3.573538 AGTTGCATGATAACCAAACTGCA 59.426 39.130 0.00 0.00 37.80 4.41
136 137 3.853831 TGCATGATAACCAAACTGCAG 57.146 42.857 13.48 13.48 34.92 4.41
137 138 2.094597 TGCATGATAACCAAACTGCAGC 60.095 45.455 15.27 0.00 34.92 5.25
138 139 2.094597 GCATGATAACCAAACTGCAGCA 60.095 45.455 15.27 0.00 0.00 4.41
139 140 3.614630 GCATGATAACCAAACTGCAGCAA 60.615 43.478 15.27 0.00 0.00 3.91
140 141 4.558178 CATGATAACCAAACTGCAGCAAA 58.442 39.130 15.27 0.00 0.00 3.68
141 142 4.241590 TGATAACCAAACTGCAGCAAAG 57.758 40.909 15.27 3.01 0.00 2.77
142 143 3.888323 TGATAACCAAACTGCAGCAAAGA 59.112 39.130 15.27 0.00 0.00 2.52
143 144 2.877043 AACCAAACTGCAGCAAAGAG 57.123 45.000 15.27 0.21 0.00 2.85
144 145 1.767759 ACCAAACTGCAGCAAAGAGT 58.232 45.000 15.27 0.91 0.00 3.24
145 146 1.406539 ACCAAACTGCAGCAAAGAGTG 59.593 47.619 15.27 1.39 0.00 3.51
146 147 1.406539 CCAAACTGCAGCAAAGAGTGT 59.593 47.619 15.27 0.00 0.00 3.55
147 148 2.456989 CAAACTGCAGCAAAGAGTGTG 58.543 47.619 15.27 0.00 0.00 3.82
148 149 0.383231 AACTGCAGCAAAGAGTGTGC 59.617 50.000 15.27 0.00 42.55 4.57
149 150 1.082300 CTGCAGCAAAGAGTGTGCG 60.082 57.895 0.00 0.00 46.86 5.34
150 151 1.501337 CTGCAGCAAAGAGTGTGCGA 61.501 55.000 0.00 0.00 46.86 5.10
151 152 1.082496 GCAGCAAAGAGTGTGCGAC 60.082 57.895 0.00 0.00 46.86 5.19
152 153 1.202568 CAGCAAAGAGTGTGCGACG 59.797 57.895 0.00 0.00 46.86 5.12
153 154 1.956170 AGCAAAGAGTGTGCGACGG 60.956 57.895 0.00 0.00 46.86 4.79
154 155 1.954146 GCAAAGAGTGTGCGACGGA 60.954 57.895 0.00 0.00 31.20 4.69
155 156 1.495584 GCAAAGAGTGTGCGACGGAA 61.496 55.000 0.00 0.00 31.20 4.30
156 157 0.934496 CAAAGAGTGTGCGACGGAAA 59.066 50.000 0.00 0.00 0.00 3.13
157 158 1.531149 CAAAGAGTGTGCGACGGAAAT 59.469 47.619 0.00 0.00 0.00 2.17
158 159 2.734606 CAAAGAGTGTGCGACGGAAATA 59.265 45.455 0.00 0.00 0.00 1.40
159 160 1.992170 AGAGTGTGCGACGGAAATAC 58.008 50.000 0.00 0.00 0.00 1.89
160 161 1.271379 AGAGTGTGCGACGGAAATACA 59.729 47.619 0.00 0.00 0.00 2.29
161 162 2.094182 AGAGTGTGCGACGGAAATACAT 60.094 45.455 0.00 0.00 0.00 2.29
162 163 1.999735 AGTGTGCGACGGAAATACATG 59.000 47.619 0.00 0.00 0.00 3.21
163 164 0.724549 TGTGCGACGGAAATACATGC 59.275 50.000 0.00 0.00 0.00 4.06
164 165 0.027586 GTGCGACGGAAATACATGCC 59.972 55.000 0.00 0.00 0.00 4.40
165 166 1.092921 TGCGACGGAAATACATGCCC 61.093 55.000 0.00 0.00 0.00 5.36
166 167 1.782028 GCGACGGAAATACATGCCCC 61.782 60.000 0.00 0.00 0.00 5.80
167 168 0.462937 CGACGGAAATACATGCCCCA 60.463 55.000 0.00 0.00 0.00 4.96
168 169 1.021968 GACGGAAATACATGCCCCAC 58.978 55.000 0.00 0.00 0.00 4.61
169 170 0.329931 ACGGAAATACATGCCCCACA 59.670 50.000 0.00 0.00 0.00 4.17
170 171 1.024271 CGGAAATACATGCCCCACAG 58.976 55.000 0.00 0.00 0.00 3.66
171 172 1.681780 CGGAAATACATGCCCCACAGT 60.682 52.381 0.00 0.00 0.00 3.55
172 173 2.420827 CGGAAATACATGCCCCACAGTA 60.421 50.000 0.00 0.00 0.00 2.74
173 174 3.214328 GGAAATACATGCCCCACAGTAG 58.786 50.000 0.00 0.00 0.00 2.57
174 175 3.118038 GGAAATACATGCCCCACAGTAGA 60.118 47.826 0.00 0.00 0.00 2.59
175 176 4.523083 GAAATACATGCCCCACAGTAGAA 58.477 43.478 0.00 0.00 0.00 2.10
176 177 3.845781 ATACATGCCCCACAGTAGAAG 57.154 47.619 0.00 0.00 0.00 2.85
177 178 0.035056 ACATGCCCCACAGTAGAAGC 60.035 55.000 0.00 0.00 0.00 3.86
178 179 0.254178 CATGCCCCACAGTAGAAGCT 59.746 55.000 0.00 0.00 0.00 3.74
179 180 0.254178 ATGCCCCACAGTAGAAGCTG 59.746 55.000 0.00 0.00 41.92 4.24
180 181 1.746991 GCCCCACAGTAGAAGCTGC 60.747 63.158 0.00 0.00 39.96 5.25
181 182 1.679311 CCCCACAGTAGAAGCTGCA 59.321 57.895 1.02 0.00 39.96 4.41
182 183 0.392193 CCCCACAGTAGAAGCTGCAG 60.392 60.000 10.11 10.11 39.96 4.41
183 184 0.610174 CCCACAGTAGAAGCTGCAGA 59.390 55.000 20.43 0.00 39.96 4.26
184 185 1.405256 CCCACAGTAGAAGCTGCAGAG 60.405 57.143 20.43 0.00 39.96 3.35
185 186 1.357907 CACAGTAGAAGCTGCAGAGC 58.642 55.000 20.43 3.23 46.64 4.09
199 200 2.391616 CAGAGCTAACTGCACCATCA 57.608 50.000 0.00 0.00 45.94 3.07
200 201 2.703416 CAGAGCTAACTGCACCATCAA 58.297 47.619 0.00 0.00 45.94 2.57
201 202 3.276857 CAGAGCTAACTGCACCATCAAT 58.723 45.455 0.00 0.00 45.94 2.57
202 203 3.311871 CAGAGCTAACTGCACCATCAATC 59.688 47.826 0.00 0.00 45.94 2.67
203 204 2.283298 AGCTAACTGCACCATCAATCG 58.717 47.619 0.00 0.00 45.94 3.34
204 205 1.268234 GCTAACTGCACCATCAATCGC 60.268 52.381 0.00 0.00 42.31 4.58
205 206 2.009051 CTAACTGCACCATCAATCGCA 58.991 47.619 0.00 0.00 0.00 5.10
207 208 1.063649 CTGCACCATCAATCGCAGC 59.936 57.895 0.00 0.00 44.69 5.25
208 209 1.650314 CTGCACCATCAATCGCAGCA 61.650 55.000 0.00 0.00 44.69 4.41
209 210 1.242665 TGCACCATCAATCGCAGCAA 61.243 50.000 0.00 0.00 0.00 3.91
210 211 0.524816 GCACCATCAATCGCAGCAAG 60.525 55.000 0.00 0.00 0.00 4.01
211 212 0.099968 CACCATCAATCGCAGCAAGG 59.900 55.000 0.00 0.00 0.00 3.61
212 213 1.065273 CCATCAATCGCAGCAAGGC 59.935 57.895 0.00 0.00 0.00 4.35
213 214 1.065273 CATCAATCGCAGCAAGGCC 59.935 57.895 0.00 0.00 0.00 5.19
214 215 1.077212 ATCAATCGCAGCAAGGCCT 60.077 52.632 0.00 0.00 0.00 5.19
215 216 1.099879 ATCAATCGCAGCAAGGCCTC 61.100 55.000 5.23 0.00 0.00 4.70
216 217 2.439156 AATCGCAGCAAGGCCTCC 60.439 61.111 5.23 0.00 0.00 4.30
217 218 4.845580 ATCGCAGCAAGGCCTCCG 62.846 66.667 5.23 0.58 0.00 4.63
221 222 3.437795 CAGCAAGGCCTCCGCTTG 61.438 66.667 23.52 11.62 32.48 4.01
224 225 3.437795 CAAGGCCTCCGCTTGCAG 61.438 66.667 5.23 0.00 34.44 4.41
225 226 3.958860 AAGGCCTCCGCTTGCAGT 61.959 61.111 5.23 0.00 34.44 4.40
226 227 4.711949 AGGCCTCCGCTTGCAGTG 62.712 66.667 0.00 0.00 34.44 3.66
227 228 4.704833 GGCCTCCGCTTGCAGTGA 62.705 66.667 0.00 0.00 34.44 3.41
257 258 1.136147 CAGCTGCAATGAACTCGCC 59.864 57.895 0.00 0.00 0.00 5.54
258 259 2.042831 AGCTGCAATGAACTCGCCC 61.043 57.895 1.02 0.00 0.00 6.13
260 261 1.589716 GCTGCAATGAACTCGCCCTT 61.590 55.000 0.00 0.00 0.00 3.95
261 262 1.737838 CTGCAATGAACTCGCCCTTA 58.262 50.000 0.00 0.00 0.00 2.69
264 265 3.088532 TGCAATGAACTCGCCCTTATTT 58.911 40.909 0.00 0.00 0.00 1.40
265 266 3.119531 TGCAATGAACTCGCCCTTATTTG 60.120 43.478 0.00 0.00 0.00 2.32
266 267 3.128589 GCAATGAACTCGCCCTTATTTGA 59.871 43.478 0.00 0.00 0.00 2.69
270 272 2.489938 ACTCGCCCTTATTTGAGCAA 57.510 45.000 0.00 0.00 31.64 3.91
281 283 6.127535 CCCTTATTTGAGCAAGACATCAATGT 60.128 38.462 0.00 0.00 45.16 2.71
304 307 4.639334 GGGAACCGAGTTTCTAGTTCTTT 58.361 43.478 0.00 0.00 40.86 2.52
310 313 7.012959 ACCGAGTTTCTAGTTCTTTGTTTTC 57.987 36.000 0.00 0.00 0.00 2.29
316 319 2.863401 AGTTCTTTGTTTTCACCGGC 57.137 45.000 0.00 0.00 0.00 6.13
322 325 1.646189 TTGTTTTCACCGGCTTTTGC 58.354 45.000 0.00 0.00 46.64 3.68
325 328 0.030101 TTTTCACCGGCTTTTGCTCG 59.970 50.000 0.00 0.00 46.54 5.03
329 332 2.561373 CCGGCTTTTGCTCGGTTC 59.439 61.111 0.00 0.00 46.62 3.62
331 334 1.966451 CGGCTTTTGCTCGGTTCCT 60.966 57.895 0.00 0.00 46.54 3.36
336 339 0.383949 TTTTGCTCGGTTCCTGTTGC 59.616 50.000 0.00 0.00 0.00 4.17
342 345 2.292292 GCTCGGTTCCTGTTGCTTTTTA 59.708 45.455 0.00 0.00 0.00 1.52
345 348 5.116069 TCGGTTCCTGTTGCTTTTTATTC 57.884 39.130 0.00 0.00 0.00 1.75
347 350 5.048991 TCGGTTCCTGTTGCTTTTTATTCTC 60.049 40.000 0.00 0.00 0.00 2.87
348 351 5.470368 GGTTCCTGTTGCTTTTTATTCTCC 58.530 41.667 0.00 0.00 0.00 3.71
351 354 4.089361 CCTGTTGCTTTTTATTCTCCCCT 58.911 43.478 0.00 0.00 0.00 4.79
549 573 8.937207 TCAAATCCATGATTTTTCCCAAATTT 57.063 26.923 0.00 0.00 39.82 1.82
555 579 7.943447 TCCATGATTTTTCCCAAATTTGTGAAT 59.057 29.630 15.46 8.55 0.00 2.57
556 580 8.578151 CCATGATTTTTCCCAAATTTGTGAATT 58.422 29.630 15.46 5.58 37.06 2.17
557 581 9.968870 CATGATTTTTCCCAAATTTGTGAATTT 57.031 25.926 15.46 5.28 44.24 1.82
563 587 9.631452 TTTTCCCAAATTTGTGAATTTTTGAAC 57.369 25.926 15.46 0.00 42.14 3.18
564 588 7.326968 TCCCAAATTTGTGAATTTTTGAACC 57.673 32.000 16.73 0.00 42.14 3.62
565 589 7.115414 TCCCAAATTTGTGAATTTTTGAACCT 58.885 30.769 16.73 0.00 42.14 3.50
566 590 7.613411 TCCCAAATTTGTGAATTTTTGAACCTT 59.387 29.630 16.73 0.00 42.14 3.50
567 591 8.249638 CCCAAATTTGTGAATTTTTGAACCTTT 58.750 29.630 16.73 0.00 42.14 3.11
568 592 9.636879 CCAAATTTGTGAATTTTTGAACCTTTT 57.363 25.926 16.73 0.00 42.14 2.27
616 646 4.299155 TCGTAAAATTTTCCAAATGCGCA 58.701 34.783 14.96 14.96 0.00 6.09
618 648 4.384247 CGTAAAATTTTCCAAATGCGCAGA 59.616 37.500 18.32 4.25 0.00 4.26
621 651 3.665745 ATTTTCCAAATGCGCAGACTT 57.334 38.095 18.32 6.27 0.00 3.01
624 654 3.451141 TTCCAAATGCGCAGACTTTTT 57.549 38.095 18.32 8.31 0.00 1.94
659 689 9.810545 ATGAACTTTTTCTGGAAAAATAAACGA 57.189 25.926 17.77 5.27 45.69 3.85
703 736 3.110178 CGAGCGAACGGGACAACC 61.110 66.667 0.00 0.00 0.00 3.77
717 750 3.692406 AACCGAGCGAGTGACCCC 61.692 66.667 0.00 0.00 0.00 4.95
720 753 4.135153 CGAGCGAGTGACCCCAGG 62.135 72.222 0.00 0.00 0.00 4.45
721 754 2.680352 GAGCGAGTGACCCCAGGA 60.680 66.667 0.00 0.00 0.00 3.86
760 793 2.497293 CCACGCGTATGCTGGGTA 59.503 61.111 13.44 0.00 39.65 3.69
762 795 1.426041 CCACGCGTATGCTGGGTAAC 61.426 60.000 13.44 0.00 39.65 2.50
763 796 0.459585 CACGCGTATGCTGGGTAACT 60.460 55.000 13.44 0.00 39.65 2.24
766 799 0.377203 GCGTATGCTGGGTAACTTGC 59.623 55.000 0.00 0.00 38.39 4.01
767 800 1.014352 CGTATGCTGGGTAACTTGCC 58.986 55.000 0.00 0.00 34.73 4.52
768 801 1.014352 GTATGCTGGGTAACTTGCCG 58.986 55.000 0.00 0.00 34.73 5.69
769 802 0.107410 TATGCTGGGTAACTTGCCGG 60.107 55.000 0.00 0.00 34.73 6.13
771 804 2.033448 CTGGGTAACTTGCCGGCA 59.967 61.111 29.03 29.03 0.00 5.69
788 827 2.112297 AAAACCGGCGGCAGAAGA 59.888 55.556 28.71 0.00 0.00 2.87
801 840 1.403514 GCAGAAGACTCGGGAGACTTG 60.404 57.143 16.05 6.77 41.93 3.16
815 854 1.995542 AGACTTGTCCCATGTCCCATT 59.004 47.619 6.63 0.00 38.68 3.16
818 857 2.109834 ACTTGTCCCATGTCCCATTTCA 59.890 45.455 0.00 0.00 0.00 2.69
819 858 2.988636 TGTCCCATGTCCCATTTCAA 57.011 45.000 0.00 0.00 0.00 2.69
820 859 3.251016 TGTCCCATGTCCCATTTCAAA 57.749 42.857 0.00 0.00 0.00 2.69
821 860 3.581101 TGTCCCATGTCCCATTTCAAAA 58.419 40.909 0.00 0.00 0.00 2.44
847 886 8.654230 TCAAAATTCAAAATTCGAATGACCAA 57.346 26.923 12.25 3.53 33.41 3.67
848 887 8.547069 TCAAAATTCAAAATTCGAATGACCAAC 58.453 29.630 12.25 0.00 33.41 3.77
849 888 6.689178 AATTCAAAATTCGAATGACCAACG 57.311 33.333 12.25 0.00 33.41 4.10
850 889 4.153958 TCAAAATTCGAATGACCAACGG 57.846 40.909 12.25 0.00 0.00 4.44
851 890 2.629639 AAATTCGAATGACCAACGGC 57.370 45.000 12.25 0.00 0.00 5.68
852 891 1.529226 AATTCGAATGACCAACGGCA 58.471 45.000 12.25 0.00 0.00 5.69
853 892 1.086696 ATTCGAATGACCAACGGCAG 58.913 50.000 10.50 0.00 0.00 4.85
854 893 1.573829 TTCGAATGACCAACGGCAGC 61.574 55.000 0.00 0.00 0.00 5.25
855 894 2.877691 GAATGACCAACGGCAGCC 59.122 61.111 0.00 0.00 0.00 4.85
879 918 3.433031 GCAGCCCGGCACCATATATATAA 60.433 47.826 13.15 0.00 0.00 0.98
881 920 4.574828 CAGCCCGGCACCATATATATAAAC 59.425 45.833 13.15 0.00 0.00 2.01
886 930 5.365619 CGGCACCATATATATAAACCCCTC 58.634 45.833 0.00 0.00 0.00 4.30
898 942 9.954992 ATATATAAACCCCTCTCTATCCCTAAC 57.045 37.037 0.00 0.00 0.00 2.34
899 943 3.347759 AACCCCTCTCTATCCCTAACC 57.652 52.381 0.00 0.00 0.00 2.85
934 978 1.478288 CCATCTGATTCTGCCCCCTTC 60.478 57.143 0.00 0.00 0.00 3.46
941 985 0.776080 TTCTGCCCCCTTCCTTCCTT 60.776 55.000 0.00 0.00 0.00 3.36
944 988 1.931180 GCCCCCTTCCTTCCTTCCT 60.931 63.158 0.00 0.00 0.00 3.36
945 989 1.510431 GCCCCCTTCCTTCCTTCCTT 61.510 60.000 0.00 0.00 0.00 3.36
947 991 0.626382 CCCCTTCCTTCCTTCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
948 992 1.675007 CCCTTCCTTCCTTCCTTCCT 58.325 55.000 0.00 0.00 0.00 3.36
950 994 2.291217 CCCTTCCTTCCTTCCTTCCTTG 60.291 54.545 0.00 0.00 0.00 3.61
952 996 0.698818 TCCTTCCTTCCTTCCTTGCC 59.301 55.000 0.00 0.00 0.00 4.52
953 997 0.405585 CCTTCCTTCCTTCCTTGCCA 59.594 55.000 0.00 0.00 0.00 4.92
955 999 2.597455 CTTCCTTCCTTCCTTGCCAAA 58.403 47.619 0.00 0.00 0.00 3.28
956 1000 2.999185 TCCTTCCTTCCTTGCCAAAT 57.001 45.000 0.00 0.00 0.00 2.32
957 1001 2.807676 TCCTTCCTTCCTTGCCAAATC 58.192 47.619 0.00 0.00 0.00 2.17
958 1002 1.827344 CCTTCCTTCCTTGCCAAATCC 59.173 52.381 0.00 0.00 0.00 3.01
959 1003 1.827344 CTTCCTTCCTTGCCAAATCCC 59.173 52.381 0.00 0.00 0.00 3.85
960 1004 0.041090 TCCTTCCTTGCCAAATCCCC 59.959 55.000 0.00 0.00 0.00 4.81
961 1005 0.252193 CCTTCCTTGCCAAATCCCCA 60.252 55.000 0.00 0.00 0.00 4.96
962 1006 1.643310 CTTCCTTGCCAAATCCCCAA 58.357 50.000 0.00 0.00 0.00 4.12
963 1007 2.190538 CTTCCTTGCCAAATCCCCAAT 58.809 47.619 0.00 0.00 0.00 3.16
964 1008 1.864669 TCCTTGCCAAATCCCCAATC 58.135 50.000 0.00 0.00 0.00 2.67
965 1009 0.832626 CCTTGCCAAATCCCCAATCC 59.167 55.000 0.00 0.00 0.00 3.01
966 1010 1.570803 CTTGCCAAATCCCCAATCCA 58.429 50.000 0.00 0.00 0.00 3.41
967 1011 1.907936 CTTGCCAAATCCCCAATCCAA 59.092 47.619 0.00 0.00 0.00 3.53
968 1012 1.274712 TGCCAAATCCCCAATCCAAC 58.725 50.000 0.00 0.00 0.00 3.77
969 1013 1.274712 GCCAAATCCCCAATCCAACA 58.725 50.000 0.00 0.00 0.00 3.33
970 1014 1.627834 GCCAAATCCCCAATCCAACAA 59.372 47.619 0.00 0.00 0.00 2.83
971 1015 2.039613 GCCAAATCCCCAATCCAACAAA 59.960 45.455 0.00 0.00 0.00 2.83
976 1020 3.611025 TCCCCAATCCAACAAAAGAGT 57.389 42.857 0.00 0.00 0.00 3.24
1097 1146 4.735132 CGGCGGCGTCTCCAAGAA 62.735 66.667 24.74 0.00 34.01 2.52
1098 1147 2.815647 GGCGGCGTCTCCAAGAAG 60.816 66.667 9.37 0.00 34.01 2.85
1099 1148 3.491652 GCGGCGTCTCCAAGAAGC 61.492 66.667 9.37 6.36 46.64 3.86
1125 1177 2.263741 GCACCACCACCAGAAGCAG 61.264 63.158 0.00 0.00 0.00 4.24
1129 1181 3.560251 ACCACCAGAAGCAGGCGT 61.560 61.111 0.00 0.00 0.00 5.68
1153 1208 4.227134 CGCATCTCCTCCACCCGG 62.227 72.222 0.00 0.00 0.00 5.73
1184 1239 4.225703 GCCGCATGCCCAAATCCC 62.226 66.667 13.15 0.00 0.00 3.85
1232 1315 7.937649 TCGATCGATCTGGTATTCTCTTTTTA 58.062 34.615 22.43 0.00 0.00 1.52
1327 1430 4.754667 GGCCCGGGAGTTCGACAC 62.755 72.222 29.31 1.68 0.00 3.67
1332 1435 2.126580 GGGAGTTCGACACGGACG 60.127 66.667 0.00 0.00 40.73 4.79
1527 1679 1.139095 GCTCCTCGTGGTTCTACCG 59.861 63.158 2.99 0.00 42.58 4.02
1570 1752 3.752665 TCAGTCTTCCTCTGTACGTCTT 58.247 45.455 0.00 0.00 34.86 3.01
1575 1757 3.506455 TCTTCCTCTGTACGTCTTTCTGG 59.494 47.826 0.00 0.00 0.00 3.86
1576 1758 2.168496 TCCTCTGTACGTCTTTCTGGG 58.832 52.381 0.00 0.00 0.00 4.45
1596 1778 1.227586 CTGGATCGATGCTGCTGCT 60.228 57.895 18.23 2.26 40.48 4.24
1627 1817 1.718757 GATGCCTTGTGATCCGGTGC 61.719 60.000 0.00 0.00 0.00 5.01
1628 1818 3.134127 GCCTTGTGATCCGGTGCC 61.134 66.667 0.00 0.00 0.00 5.01
1629 1819 2.350895 CCTTGTGATCCGGTGCCA 59.649 61.111 0.00 0.00 0.00 4.92
1630 1820 1.077501 CCTTGTGATCCGGTGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
1631 1821 1.378882 CCTTGTGATCCGGTGCCATG 61.379 60.000 0.00 0.00 0.00 3.66
1632 1822 1.996786 CTTGTGATCCGGTGCCATGC 61.997 60.000 0.00 0.00 0.00 4.06
1633 1823 2.124570 GTGATCCGGTGCCATGCT 60.125 61.111 0.00 0.00 0.00 3.79
1634 1824 2.124612 TGATCCGGTGCCATGCTG 60.125 61.111 0.00 0.00 0.00 4.41
1707 1899 8.433599 TCTACATCCCATTACGATTCCATTTTA 58.566 33.333 0.00 0.00 0.00 1.52
1708 1900 7.889873 ACATCCCATTACGATTCCATTTTAA 57.110 32.000 0.00 0.00 0.00 1.52
1709 1901 7.940850 ACATCCCATTACGATTCCATTTTAAG 58.059 34.615 0.00 0.00 0.00 1.85
1710 1902 7.777910 ACATCCCATTACGATTCCATTTTAAGA 59.222 33.333 0.00 0.00 0.00 2.10
1711 1903 8.796475 CATCCCATTACGATTCCATTTTAAGAT 58.204 33.333 0.00 0.00 0.00 2.40
1713 1905 9.502091 TCCCATTACGATTCCATTTTAAGATAG 57.498 33.333 0.00 0.00 0.00 2.08
1714 1906 8.237267 CCCATTACGATTCCATTTTAAGATAGC 58.763 37.037 0.00 0.00 0.00 2.97
1815 2008 2.738846 AGCAGAGACGCAACATTTACAG 59.261 45.455 0.00 0.00 0.00 2.74
1907 2136 2.812011 GTTGATCACAAGTACCACCACC 59.188 50.000 0.00 0.00 36.64 4.61
1958 2187 2.567615 AGCCACAGTTACTCCCAAGTAG 59.432 50.000 0.00 0.00 39.14 2.57
1964 2193 5.010719 CACAGTTACTCCCAAGTAGAAGTGA 59.989 44.000 0.00 0.00 39.14 3.41
1985 2214 6.712095 AGTGACATTTCAGCATTTCTCACTTA 59.288 34.615 0.00 0.00 34.79 2.24
1986 2215 7.229306 AGTGACATTTCAGCATTTCTCACTTAA 59.771 33.333 0.00 0.00 34.79 1.85
1987 2216 7.536622 GTGACATTTCAGCATTTCTCACTTAAG 59.463 37.037 0.00 0.00 30.10 1.85
1988 2217 6.917533 ACATTTCAGCATTTCTCACTTAAGG 58.082 36.000 7.53 0.00 0.00 2.69
1989 2218 5.376854 TTTCAGCATTTCTCACTTAAGGC 57.623 39.130 7.53 0.00 0.00 4.35
1990 2219 3.347216 TCAGCATTTCTCACTTAAGGCC 58.653 45.455 7.53 0.00 31.89 5.19
1991 2220 3.009473 TCAGCATTTCTCACTTAAGGCCT 59.991 43.478 0.00 0.00 31.89 5.19
1992 2221 3.128242 CAGCATTTCTCACTTAAGGCCTG 59.872 47.826 5.69 0.00 31.89 4.85
1993 2222 3.084786 GCATTTCTCACTTAAGGCCTGT 58.915 45.455 5.69 0.00 0.00 4.00
1994 2223 3.507622 GCATTTCTCACTTAAGGCCTGTT 59.492 43.478 5.69 0.00 0.00 3.16
1995 2224 4.379918 GCATTTCTCACTTAAGGCCTGTTC 60.380 45.833 5.69 0.00 0.00 3.18
1996 2225 2.743636 TCTCACTTAAGGCCTGTTCG 57.256 50.000 5.69 0.00 0.00 3.95
1997 2226 1.275291 TCTCACTTAAGGCCTGTTCGG 59.725 52.381 5.69 0.00 0.00 4.30
2006 2235 2.438434 CCTGTTCGGCATCCCACC 60.438 66.667 0.00 0.00 0.00 4.61
2014 2243 4.408821 GCATCCCACCGCTCCACA 62.409 66.667 0.00 0.00 0.00 4.17
2015 2244 2.436646 CATCCCACCGCTCCACAC 60.437 66.667 0.00 0.00 0.00 3.82
2016 2245 2.607750 ATCCCACCGCTCCACACT 60.608 61.111 0.00 0.00 0.00 3.55
2017 2246 2.660064 ATCCCACCGCTCCACACTC 61.660 63.158 0.00 0.00 0.00 3.51
2018 2247 4.394712 CCCACCGCTCCACACTCC 62.395 72.222 0.00 0.00 0.00 3.85
2019 2248 4.394712 CCACCGCTCCACACTCCC 62.395 72.222 0.00 0.00 0.00 4.30
2020 2249 4.742201 CACCGCTCCACACTCCCG 62.742 72.222 0.00 0.00 0.00 5.14
2023 2252 4.803426 CGCTCCACACTCCCGCTC 62.803 72.222 0.00 0.00 0.00 5.03
2024 2253 4.459089 GCTCCACACTCCCGCTCC 62.459 72.222 0.00 0.00 0.00 4.70
2025 2254 4.135153 CTCCACACTCCCGCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
2042 2271 3.706373 GGGAGCTGGCGGAGTTGA 61.706 66.667 0.00 0.00 0.00 3.18
2043 2272 2.347490 GGAGCTGGCGGAGTTGAA 59.653 61.111 0.00 0.00 0.00 2.69
2044 2273 1.743252 GGAGCTGGCGGAGTTGAAG 60.743 63.158 0.00 0.00 0.00 3.02
2045 2274 1.004440 GAGCTGGCGGAGTTGAAGT 60.004 57.895 0.00 0.00 0.00 3.01
2046 2275 0.603975 GAGCTGGCGGAGTTGAAGTT 60.604 55.000 0.00 0.00 0.00 2.66
2047 2276 0.685097 AGCTGGCGGAGTTGAAGTTA 59.315 50.000 0.00 0.00 0.00 2.24
2048 2277 1.071699 AGCTGGCGGAGTTGAAGTTAA 59.928 47.619 0.00 0.00 0.00 2.01
2049 2278 1.877443 GCTGGCGGAGTTGAAGTTAAA 59.123 47.619 0.00 0.00 0.00 1.52
2050 2279 2.292292 GCTGGCGGAGTTGAAGTTAAAA 59.708 45.455 0.00 0.00 0.00 1.52
2051 2280 3.243267 GCTGGCGGAGTTGAAGTTAAAAA 60.243 43.478 0.00 0.00 0.00 1.94
2052 2281 4.558697 GCTGGCGGAGTTGAAGTTAAAAAT 60.559 41.667 0.00 0.00 0.00 1.82
2053 2282 5.523438 TGGCGGAGTTGAAGTTAAAAATT 57.477 34.783 0.00 0.00 0.00 1.82
2054 2283 6.636562 TGGCGGAGTTGAAGTTAAAAATTA 57.363 33.333 0.00 0.00 0.00 1.40
2055 2284 6.440436 TGGCGGAGTTGAAGTTAAAAATTAC 58.560 36.000 0.00 0.00 0.00 1.89
2056 2285 5.566395 GGCGGAGTTGAAGTTAAAAATTACG 59.434 40.000 0.00 0.00 0.00 3.18
2057 2286 5.566395 GCGGAGTTGAAGTTAAAAATTACGG 59.434 40.000 0.00 0.00 0.00 4.02
2058 2287 6.566376 GCGGAGTTGAAGTTAAAAATTACGGA 60.566 38.462 0.00 0.00 0.00 4.69
2059 2288 7.013529 CGGAGTTGAAGTTAAAAATTACGGAG 58.986 38.462 0.00 0.00 0.00 4.63
2060 2289 6.800408 GGAGTTGAAGTTAAAAATTACGGAGC 59.200 38.462 0.00 0.00 0.00 4.70
2061 2290 6.368213 AGTTGAAGTTAAAAATTACGGAGCG 58.632 36.000 0.00 0.00 0.00 5.03
2062 2291 5.285798 TGAAGTTAAAAATTACGGAGCGG 57.714 39.130 0.00 0.00 0.00 5.52
2063 2292 4.154556 TGAAGTTAAAAATTACGGAGCGGG 59.845 41.667 0.00 0.00 0.00 6.13
2064 2293 3.011818 AGTTAAAAATTACGGAGCGGGG 58.988 45.455 0.00 0.00 0.00 5.73
2065 2294 2.041251 TAAAAATTACGGAGCGGGGG 57.959 50.000 0.00 0.00 0.00 5.40
2066 2295 0.328926 AAAAATTACGGAGCGGGGGA 59.671 50.000 0.00 0.00 0.00 4.81
2067 2296 0.328926 AAAATTACGGAGCGGGGGAA 59.671 50.000 0.00 0.00 0.00 3.97
2068 2297 0.393402 AAATTACGGAGCGGGGGAAC 60.393 55.000 0.00 0.00 0.00 3.62
2069 2298 1.555477 AATTACGGAGCGGGGGAACA 61.555 55.000 0.00 0.00 0.00 3.18
2070 2299 1.968050 ATTACGGAGCGGGGGAACAG 61.968 60.000 0.00 0.00 0.00 3.16
2089 2318 3.586961 CGCTCCGCAGATCCTCGA 61.587 66.667 5.86 0.00 0.00 4.04
2090 2319 2.808315 GCTCCGCAGATCCTCGAA 59.192 61.111 5.86 0.00 0.00 3.71
2091 2320 1.365633 GCTCCGCAGATCCTCGAAT 59.634 57.895 5.86 0.00 0.00 3.34
2092 2321 0.249657 GCTCCGCAGATCCTCGAATT 60.250 55.000 5.86 0.00 0.00 2.17
2093 2322 1.808133 GCTCCGCAGATCCTCGAATTT 60.808 52.381 5.86 0.00 0.00 1.82
2094 2323 2.131183 CTCCGCAGATCCTCGAATTTC 58.869 52.381 5.86 0.00 0.00 2.17
2095 2324 1.480545 TCCGCAGATCCTCGAATTTCA 59.519 47.619 5.86 0.00 0.00 2.69
2096 2325 1.594862 CCGCAGATCCTCGAATTTCAC 59.405 52.381 5.86 0.00 0.00 3.18
2097 2326 1.256376 CGCAGATCCTCGAATTTCACG 59.744 52.381 0.00 0.00 0.00 4.35
2098 2327 1.594862 GCAGATCCTCGAATTTCACGG 59.405 52.381 0.00 0.00 0.00 4.94
2099 2328 2.738643 GCAGATCCTCGAATTTCACGGA 60.739 50.000 6.23 6.23 0.00 4.69
2100 2329 3.119291 CAGATCCTCGAATTTCACGGAG 58.881 50.000 8.91 2.57 0.00 4.63
2101 2330 1.861575 GATCCTCGAATTTCACGGAGC 59.138 52.381 8.91 6.63 0.00 4.70
2102 2331 0.606096 TCCTCGAATTTCACGGAGCA 59.394 50.000 0.00 0.00 0.00 4.26
2103 2332 0.721718 CCTCGAATTTCACGGAGCAC 59.278 55.000 0.00 0.00 0.00 4.40
2118 2347 3.353836 CACGGGGTTGCCGAACAG 61.354 66.667 0.00 0.00 33.27 3.16
2119 2348 4.636435 ACGGGGTTGCCGAACAGG 62.636 66.667 0.00 0.00 44.97 4.00
2179 2416 7.938140 AAAAACATATTTAGCCAGCTACAGA 57.062 32.000 0.00 0.00 0.00 3.41
2181 2418 9.627123 AAAAACATATTTAGCCAGCTACAGATA 57.373 29.630 0.00 0.00 0.00 1.98
2182 2419 8.839310 AAACATATTTAGCCAGCTACAGATAG 57.161 34.615 0.00 0.00 0.00 2.08
2183 2420 7.546250 ACATATTTAGCCAGCTACAGATAGT 57.454 36.000 0.00 0.00 0.00 2.12
2184 2421 7.382110 ACATATTTAGCCAGCTACAGATAGTG 58.618 38.462 0.00 3.30 0.00 2.74
2185 2422 3.735237 TTAGCCAGCTACAGATAGTGC 57.265 47.619 0.00 0.00 0.00 4.40
2186 2423 1.489481 AGCCAGCTACAGATAGTGCA 58.511 50.000 0.00 0.00 0.00 4.57
2187 2424 2.045524 AGCCAGCTACAGATAGTGCAT 58.954 47.619 0.00 0.00 0.00 3.96
2188 2425 2.036992 AGCCAGCTACAGATAGTGCATC 59.963 50.000 0.00 0.00 0.00 3.91
2189 2426 2.670479 CCAGCTACAGATAGTGCATCG 58.330 52.381 0.00 0.00 38.81 3.84
2190 2427 2.294512 CCAGCTACAGATAGTGCATCGA 59.705 50.000 0.00 0.00 38.81 3.59
2194 2431 3.003793 GCTACAGATAGTGCATCGACAGA 59.996 47.826 0.00 0.00 38.81 3.41
2195 2432 3.706802 ACAGATAGTGCATCGACAGAG 57.293 47.619 0.00 0.00 38.81 3.35
2196 2433 2.223688 ACAGATAGTGCATCGACAGAGC 60.224 50.000 0.00 0.00 38.81 4.09
2197 2434 2.034432 CAGATAGTGCATCGACAGAGCT 59.966 50.000 0.00 0.00 38.81 4.09
2198 2435 2.293122 AGATAGTGCATCGACAGAGCTC 59.707 50.000 5.27 5.27 38.81 4.09
2199 2436 1.756430 TAGTGCATCGACAGAGCTCT 58.244 50.000 11.45 11.45 36.29 4.09
2200 2437 0.455410 AGTGCATCGACAGAGCTCTC 59.545 55.000 14.96 2.65 0.00 3.20
2201 2438 0.527385 GTGCATCGACAGAGCTCTCC 60.527 60.000 14.96 7.94 0.00 3.71
2202 2439 1.067250 GCATCGACAGAGCTCTCCC 59.933 63.158 14.96 7.55 0.00 4.30
2203 2440 1.358402 CATCGACAGAGCTCTCCCG 59.642 63.158 14.96 19.32 0.00 5.14
2204 2441 2.485795 ATCGACAGAGCTCTCCCGC 61.486 63.158 22.59 9.58 0.00 6.13
2205 2442 3.443925 CGACAGAGCTCTCCCGCA 61.444 66.667 14.96 0.00 0.00 5.69
2206 2443 2.780094 CGACAGAGCTCTCCCGCAT 61.780 63.158 14.96 0.00 0.00 4.73
2207 2444 1.067250 GACAGAGCTCTCCCGCATC 59.933 63.158 14.96 1.21 0.00 3.91
2208 2445 1.670949 GACAGAGCTCTCCCGCATCA 61.671 60.000 14.96 0.00 0.00 3.07
2209 2446 1.260538 ACAGAGCTCTCCCGCATCAA 61.261 55.000 14.96 0.00 0.00 2.57
2213 2450 1.069204 GAGCTCTCCCGCATCAACATA 59.931 52.381 6.43 0.00 0.00 2.29
2234 2471 1.261938 TTAGTCTAGCAGGCCGCCAA 61.262 55.000 13.15 4.47 44.04 4.52
2290 2527 4.279169 ACACAGGTTCTTGTTCAATGGATG 59.721 41.667 0.00 0.00 0.00 3.51
2291 2528 4.520111 CACAGGTTCTTGTTCAATGGATGA 59.480 41.667 0.00 0.00 35.85 2.92
2292 2529 5.184479 CACAGGTTCTTGTTCAATGGATGAT 59.816 40.000 0.00 0.00 38.03 2.45
2329 2566 5.405935 AAGGATGCAAATAAACAGGTTCC 57.594 39.130 0.00 0.00 0.00 3.62
2373 2610 8.210946 AGCCATAATAAGTTTACATCTGCTACA 58.789 33.333 0.00 0.00 0.00 2.74
2411 2648 9.750125 CAGTTAGTTGTCTACATATCTAATGCA 57.250 33.333 0.00 0.00 0.00 3.96
2440 2677 1.667191 AGCAGAGACGCTTGCAGTG 60.667 57.895 0.00 0.00 39.99 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.671845 CGTTTTTCCACGTCCAAGGAA 59.328 47.619 1.14 1.14 41.92 3.36
6 7 0.658897 GAGCGTTTTTCCACGTCCAA 59.341 50.000 0.00 0.00 42.43 3.53
7 8 0.179067 AGAGCGTTTTTCCACGTCCA 60.179 50.000 0.00 0.00 42.43 4.02
8 9 0.511653 GAGAGCGTTTTTCCACGTCC 59.488 55.000 0.00 0.00 42.43 4.79
9 10 0.511653 GGAGAGCGTTTTTCCACGTC 59.488 55.000 0.00 0.00 42.43 4.34
10 11 0.179067 TGGAGAGCGTTTTTCCACGT 60.179 50.000 2.95 0.00 42.43 4.49
11 12 1.156736 ATGGAGAGCGTTTTTCCACG 58.843 50.000 8.27 0.00 43.32 4.94
12 13 4.473199 GTTAATGGAGAGCGTTTTTCCAC 58.527 43.478 8.27 0.00 43.32 4.02
13 14 3.187637 CGTTAATGGAGAGCGTTTTTCCA 59.812 43.478 8.48 8.48 44.52 3.53
14 15 3.434299 TCGTTAATGGAGAGCGTTTTTCC 59.566 43.478 0.00 0.00 0.00 3.13
16 17 4.514066 AGTTCGTTAATGGAGAGCGTTTTT 59.486 37.500 0.00 0.00 0.00 1.94
17 18 4.062991 AGTTCGTTAATGGAGAGCGTTTT 58.937 39.130 0.00 0.00 0.00 2.43
18 19 3.432252 CAGTTCGTTAATGGAGAGCGTTT 59.568 43.478 0.00 0.00 0.00 3.60
19 20 2.993899 CAGTTCGTTAATGGAGAGCGTT 59.006 45.455 0.00 0.00 0.00 4.84
20 21 2.607187 CAGTTCGTTAATGGAGAGCGT 58.393 47.619 0.00 0.00 0.00 5.07
21 22 1.927174 CCAGTTCGTTAATGGAGAGCG 59.073 52.381 1.46 0.00 36.09 5.03
22 23 2.673368 CACCAGTTCGTTAATGGAGAGC 59.327 50.000 12.36 0.00 37.54 4.09
23 24 2.673368 GCACCAGTTCGTTAATGGAGAG 59.327 50.000 12.36 4.79 37.54 3.20
24 25 2.037902 TGCACCAGTTCGTTAATGGAGA 59.962 45.455 12.36 0.00 37.54 3.71
25 26 2.416547 CTGCACCAGTTCGTTAATGGAG 59.583 50.000 12.36 6.77 37.54 3.86
26 27 2.422597 CTGCACCAGTTCGTTAATGGA 58.577 47.619 12.36 0.00 37.54 3.41
27 28 1.135689 GCTGCACCAGTTCGTTAATGG 60.136 52.381 0.00 5.47 40.10 3.16
28 29 1.535028 TGCTGCACCAGTTCGTTAATG 59.465 47.619 0.00 0.00 33.43 1.90
29 30 1.806542 CTGCTGCACCAGTTCGTTAAT 59.193 47.619 0.00 0.00 33.43 1.40
30 31 1.202592 TCTGCTGCACCAGTTCGTTAA 60.203 47.619 8.84 0.00 33.43 2.01
31 32 0.391228 TCTGCTGCACCAGTTCGTTA 59.609 50.000 8.84 0.00 33.43 3.18
32 33 0.463654 TTCTGCTGCACCAGTTCGTT 60.464 50.000 8.84 0.00 33.43 3.85
33 34 0.250467 ATTCTGCTGCACCAGTTCGT 60.250 50.000 8.84 0.00 33.43 3.85
34 35 0.877071 AATTCTGCTGCACCAGTTCG 59.123 50.000 8.84 0.00 33.43 3.95
35 36 1.668047 GCAATTCTGCTGCACCAGTTC 60.668 52.381 8.84 0.00 45.74 3.01
36 37 0.316204 GCAATTCTGCTGCACCAGTT 59.684 50.000 8.84 0.00 45.74 3.16
37 38 1.962144 GCAATTCTGCTGCACCAGT 59.038 52.632 8.84 0.00 45.74 4.00
38 39 4.883026 GCAATTCTGCTGCACCAG 57.117 55.556 2.36 2.36 45.74 4.00
47 48 3.256631 AGGTTTGGTTGCTAGCAATTCTG 59.743 43.478 31.46 0.00 41.06 3.02
48 49 3.256631 CAGGTTTGGTTGCTAGCAATTCT 59.743 43.478 31.46 18.53 41.06 2.40
49 50 3.255642 TCAGGTTTGGTTGCTAGCAATTC 59.744 43.478 31.46 24.91 41.06 2.17
50 51 3.230134 TCAGGTTTGGTTGCTAGCAATT 58.770 40.909 31.46 9.97 41.06 2.32
51 52 2.875296 TCAGGTTTGGTTGCTAGCAAT 58.125 42.857 31.46 12.34 41.06 3.56
52 53 2.356665 TCAGGTTTGGTTGCTAGCAA 57.643 45.000 26.06 26.06 39.82 3.91
53 54 2.356665 TTCAGGTTTGGTTGCTAGCA 57.643 45.000 14.93 14.93 0.00 3.49
54 55 2.360801 TGTTTCAGGTTTGGTTGCTAGC 59.639 45.455 8.10 8.10 0.00 3.42
55 56 4.647424 TTGTTTCAGGTTTGGTTGCTAG 57.353 40.909 0.00 0.00 0.00 3.42
56 57 4.464597 ACTTTGTTTCAGGTTTGGTTGCTA 59.535 37.500 0.00 0.00 0.00 3.49
57 58 3.260632 ACTTTGTTTCAGGTTTGGTTGCT 59.739 39.130 0.00 0.00 0.00 3.91
58 59 3.595173 ACTTTGTTTCAGGTTTGGTTGC 58.405 40.909 0.00 0.00 0.00 4.17
59 60 5.348164 CCTACTTTGTTTCAGGTTTGGTTG 58.652 41.667 0.00 0.00 0.00 3.77
60 61 4.142026 GCCTACTTTGTTTCAGGTTTGGTT 60.142 41.667 0.00 0.00 0.00 3.67
61 62 3.383505 GCCTACTTTGTTTCAGGTTTGGT 59.616 43.478 0.00 0.00 0.00 3.67
62 63 3.383185 TGCCTACTTTGTTTCAGGTTTGG 59.617 43.478 0.00 0.00 0.00 3.28
63 64 4.647424 TGCCTACTTTGTTTCAGGTTTG 57.353 40.909 0.00 0.00 0.00 2.93
64 65 6.572314 GCATATGCCTACTTTGTTTCAGGTTT 60.572 38.462 17.26 0.00 34.31 3.27
65 66 5.105756 GCATATGCCTACTTTGTTTCAGGTT 60.106 40.000 17.26 0.00 34.31 3.50
66 67 4.399303 GCATATGCCTACTTTGTTTCAGGT 59.601 41.667 17.26 0.00 34.31 4.00
67 68 4.641989 AGCATATGCCTACTTTGTTTCAGG 59.358 41.667 23.96 0.00 43.38 3.86
68 69 5.824904 AGCATATGCCTACTTTGTTTCAG 57.175 39.130 23.96 0.00 43.38 3.02
69 70 5.709631 TGAAGCATATGCCTACTTTGTTTCA 59.290 36.000 23.96 18.84 43.38 2.69
70 71 6.194796 TGAAGCATATGCCTACTTTGTTTC 57.805 37.500 23.96 16.67 43.38 2.78
71 72 6.183360 GGATGAAGCATATGCCTACTTTGTTT 60.183 38.462 23.96 8.35 43.38 2.83
72 73 5.300286 GGATGAAGCATATGCCTACTTTGTT 59.700 40.000 23.96 9.08 43.38 2.83
73 74 4.823989 GGATGAAGCATATGCCTACTTTGT 59.176 41.667 23.96 0.00 43.38 2.83
74 75 4.823442 TGGATGAAGCATATGCCTACTTTG 59.177 41.667 23.96 0.00 43.38 2.77
75 76 5.052693 TGGATGAAGCATATGCCTACTTT 57.947 39.130 23.96 11.33 43.38 2.66
76 77 4.712051 TGGATGAAGCATATGCCTACTT 57.288 40.909 23.96 11.72 43.38 2.24
77 78 4.712051 TTGGATGAAGCATATGCCTACT 57.288 40.909 23.96 7.10 43.38 2.57
78 79 5.972107 ATTTGGATGAAGCATATGCCTAC 57.028 39.130 23.96 15.25 43.38 3.18
79 80 6.656270 CACTATTTGGATGAAGCATATGCCTA 59.344 38.462 23.96 11.04 43.38 3.93
80 81 5.475909 CACTATTTGGATGAAGCATATGCCT 59.524 40.000 23.96 11.84 43.38 4.75
81 82 5.706916 CACTATTTGGATGAAGCATATGCC 58.293 41.667 23.96 10.41 43.38 4.40
96 97 2.489329 CAACTGTGCCCTCCACTATTTG 59.511 50.000 0.00 0.00 44.92 2.32
97 98 2.795329 CAACTGTGCCCTCCACTATTT 58.205 47.619 0.00 0.00 44.92 1.40
98 99 1.614317 GCAACTGTGCCCTCCACTATT 60.614 52.381 0.00 0.00 45.68 1.73
99 100 0.035056 GCAACTGTGCCCTCCACTAT 60.035 55.000 0.00 0.00 45.68 2.12
100 101 1.374947 GCAACTGTGCCCTCCACTA 59.625 57.895 0.00 0.00 45.68 2.74
101 102 2.113986 GCAACTGTGCCCTCCACT 59.886 61.111 0.00 0.00 45.68 4.00
110 111 4.919168 CAGTTTGGTTATCATGCAACTGTG 59.081 41.667 0.00 0.00 37.15 3.66
111 112 4.559300 GCAGTTTGGTTATCATGCAACTGT 60.559 41.667 9.41 0.00 40.85 3.55
112 113 3.922240 GCAGTTTGGTTATCATGCAACTG 59.078 43.478 4.64 4.64 41.30 3.16
113 114 3.573538 TGCAGTTTGGTTATCATGCAACT 59.426 39.130 0.00 0.00 40.43 3.16
114 115 3.911868 TGCAGTTTGGTTATCATGCAAC 58.088 40.909 0.00 0.00 40.43 4.17
115 116 3.614630 GCTGCAGTTTGGTTATCATGCAA 60.615 43.478 16.64 0.00 42.52 4.08
116 117 2.094597 GCTGCAGTTTGGTTATCATGCA 60.095 45.455 16.64 0.00 41.05 3.96
117 118 2.094597 TGCTGCAGTTTGGTTATCATGC 60.095 45.455 16.64 0.00 0.00 4.06
118 119 3.853831 TGCTGCAGTTTGGTTATCATG 57.146 42.857 16.64 0.00 0.00 3.07
119 120 4.523943 TCTTTGCTGCAGTTTGGTTATCAT 59.476 37.500 16.64 0.00 0.00 2.45
120 121 3.888323 TCTTTGCTGCAGTTTGGTTATCA 59.112 39.130 16.64 0.00 0.00 2.15
121 122 4.022849 ACTCTTTGCTGCAGTTTGGTTATC 60.023 41.667 16.64 0.00 0.00 1.75
122 123 3.891366 ACTCTTTGCTGCAGTTTGGTTAT 59.109 39.130 16.64 0.00 0.00 1.89
123 124 3.066621 CACTCTTTGCTGCAGTTTGGTTA 59.933 43.478 16.64 0.00 0.00 2.85
124 125 2.102578 ACTCTTTGCTGCAGTTTGGTT 58.897 42.857 16.64 0.00 0.00 3.67
125 126 1.406539 CACTCTTTGCTGCAGTTTGGT 59.593 47.619 16.64 4.62 0.00 3.67
126 127 1.406539 ACACTCTTTGCTGCAGTTTGG 59.593 47.619 16.64 4.17 0.00 3.28
127 128 2.456989 CACACTCTTTGCTGCAGTTTG 58.543 47.619 16.64 3.79 0.00 2.93
128 129 1.202336 GCACACTCTTTGCTGCAGTTT 60.202 47.619 16.64 0.00 37.00 2.66
129 130 0.383231 GCACACTCTTTGCTGCAGTT 59.617 50.000 16.64 0.00 37.00 3.16
130 131 1.779025 CGCACACTCTTTGCTGCAGT 61.779 55.000 16.64 0.00 37.87 4.40
131 132 1.082300 CGCACACTCTTTGCTGCAG 60.082 57.895 10.11 10.11 37.87 4.41
132 133 1.523484 TCGCACACTCTTTGCTGCA 60.523 52.632 0.00 0.00 37.87 4.41
133 134 1.082496 GTCGCACACTCTTTGCTGC 60.082 57.895 0.00 0.00 37.87 5.25
134 135 1.202568 CGTCGCACACTCTTTGCTG 59.797 57.895 0.00 0.00 37.87 4.41
135 136 1.956170 CCGTCGCACACTCTTTGCT 60.956 57.895 0.00 0.00 37.87 3.91
136 137 1.495584 TTCCGTCGCACACTCTTTGC 61.496 55.000 0.00 0.00 36.57 3.68
137 138 0.934496 TTTCCGTCGCACACTCTTTG 59.066 50.000 0.00 0.00 0.00 2.77
138 139 1.878953 ATTTCCGTCGCACACTCTTT 58.121 45.000 0.00 0.00 0.00 2.52
139 140 2.288579 TGTATTTCCGTCGCACACTCTT 60.289 45.455 0.00 0.00 0.00 2.85
140 141 1.271379 TGTATTTCCGTCGCACACTCT 59.729 47.619 0.00 0.00 0.00 3.24
141 142 1.705256 TGTATTTCCGTCGCACACTC 58.295 50.000 0.00 0.00 0.00 3.51
142 143 1.999735 CATGTATTTCCGTCGCACACT 59.000 47.619 0.00 0.00 0.00 3.55
143 144 1.529010 GCATGTATTTCCGTCGCACAC 60.529 52.381 0.00 0.00 0.00 3.82
144 145 0.724549 GCATGTATTTCCGTCGCACA 59.275 50.000 0.00 0.00 0.00 4.57
145 146 0.027586 GGCATGTATTTCCGTCGCAC 59.972 55.000 0.00 0.00 0.00 5.34
146 147 1.092921 GGGCATGTATTTCCGTCGCA 61.093 55.000 0.00 0.00 0.00 5.10
147 148 1.647084 GGGCATGTATTTCCGTCGC 59.353 57.895 0.00 0.00 0.00 5.19
148 149 0.462937 TGGGGCATGTATTTCCGTCG 60.463 55.000 0.00 0.00 0.00 5.12
149 150 1.021968 GTGGGGCATGTATTTCCGTC 58.978 55.000 0.00 0.00 0.00 4.79
150 151 0.329931 TGTGGGGCATGTATTTCCGT 59.670 50.000 0.00 0.00 0.00 4.69
151 152 1.024271 CTGTGGGGCATGTATTTCCG 58.976 55.000 0.00 0.00 0.00 4.30
152 153 2.143876 ACTGTGGGGCATGTATTTCC 57.856 50.000 0.00 0.00 0.00 3.13
153 154 4.150897 TCTACTGTGGGGCATGTATTTC 57.849 45.455 0.00 0.00 0.00 2.17
154 155 4.526970 CTTCTACTGTGGGGCATGTATTT 58.473 43.478 0.00 0.00 0.00 1.40
155 156 3.685550 GCTTCTACTGTGGGGCATGTATT 60.686 47.826 0.00 0.00 0.00 1.89
156 157 2.158755 GCTTCTACTGTGGGGCATGTAT 60.159 50.000 0.00 0.00 0.00 2.29
157 158 1.209504 GCTTCTACTGTGGGGCATGTA 59.790 52.381 0.00 0.00 0.00 2.29
158 159 0.035056 GCTTCTACTGTGGGGCATGT 60.035 55.000 0.00 0.00 0.00 3.21
159 160 0.254178 AGCTTCTACTGTGGGGCATG 59.746 55.000 10.95 0.00 0.00 4.06
160 161 0.254178 CAGCTTCTACTGTGGGGCAT 59.746 55.000 10.95 0.00 32.78 4.40
161 162 1.679311 CAGCTTCTACTGTGGGGCA 59.321 57.895 10.95 0.00 32.78 5.36
162 163 1.746991 GCAGCTTCTACTGTGGGGC 60.747 63.158 0.00 0.00 39.96 5.80
163 164 0.392193 CTGCAGCTTCTACTGTGGGG 60.392 60.000 0.00 0.00 39.96 4.96
164 165 0.610174 TCTGCAGCTTCTACTGTGGG 59.390 55.000 9.47 0.00 39.96 4.61
165 166 2.006056 GCTCTGCAGCTTCTACTGTGG 61.006 57.143 9.47 0.00 43.09 4.17
166 167 1.357907 GCTCTGCAGCTTCTACTGTG 58.642 55.000 9.47 0.00 43.09 3.66
167 168 3.830679 GCTCTGCAGCTTCTACTGT 57.169 52.632 9.47 0.00 43.09 3.55
180 181 2.391616 TGATGGTGCAGTTAGCTCTG 57.608 50.000 0.00 0.00 45.94 3.35
181 182 3.539604 GATTGATGGTGCAGTTAGCTCT 58.460 45.455 0.00 0.00 45.94 4.09
182 183 2.286294 CGATTGATGGTGCAGTTAGCTC 59.714 50.000 0.00 0.00 45.94 4.09
183 184 2.283298 CGATTGATGGTGCAGTTAGCT 58.717 47.619 0.00 0.00 45.94 3.32
184 185 1.268234 GCGATTGATGGTGCAGTTAGC 60.268 52.381 0.00 0.00 45.96 3.09
185 186 2.009051 TGCGATTGATGGTGCAGTTAG 58.991 47.619 0.00 0.00 32.73 2.34
186 187 2.106477 TGCGATTGATGGTGCAGTTA 57.894 45.000 0.00 0.00 32.73 2.24
187 188 2.945510 TGCGATTGATGGTGCAGTT 58.054 47.368 0.00 0.00 32.73 3.16
188 189 4.720127 TGCGATTGATGGTGCAGT 57.280 50.000 0.00 0.00 32.73 4.40
190 191 1.242665 TTGCTGCGATTGATGGTGCA 61.243 50.000 0.00 0.00 35.75 4.57
191 192 0.524816 CTTGCTGCGATTGATGGTGC 60.525 55.000 0.00 0.00 0.00 5.01
192 193 0.099968 CCTTGCTGCGATTGATGGTG 59.900 55.000 0.00 0.00 0.00 4.17
193 194 1.660560 GCCTTGCTGCGATTGATGGT 61.661 55.000 0.00 0.00 0.00 3.55
194 195 1.065273 GCCTTGCTGCGATTGATGG 59.935 57.895 0.00 0.00 0.00 3.51
195 196 1.065273 GGCCTTGCTGCGATTGATG 59.935 57.895 0.00 0.00 0.00 3.07
196 197 1.077212 AGGCCTTGCTGCGATTGAT 60.077 52.632 0.00 0.00 0.00 2.57
197 198 1.746615 GAGGCCTTGCTGCGATTGA 60.747 57.895 6.77 0.00 0.00 2.57
198 199 2.768492 GGAGGCCTTGCTGCGATTG 61.768 63.158 6.77 0.00 0.00 2.67
199 200 2.439156 GGAGGCCTTGCTGCGATT 60.439 61.111 6.77 0.00 0.00 3.34
200 201 4.845580 CGGAGGCCTTGCTGCGAT 62.846 66.667 6.77 0.00 36.54 4.58
204 205 3.437795 CAAGCGGAGGCCTTGCTG 61.438 66.667 28.03 19.39 39.30 4.41
207 208 3.437795 CTGCAAGCGGAGGCCTTG 61.438 66.667 6.77 3.69 41.24 3.61
208 209 3.958860 ACTGCAAGCGGAGGCCTT 61.959 61.111 6.77 0.00 41.24 4.35
209 210 4.711949 CACTGCAAGCGGAGGCCT 62.712 66.667 3.86 3.86 41.24 5.19
210 211 4.704833 TCACTGCAAGCGGAGGCC 62.705 66.667 8.05 0.00 41.24 5.19
211 212 3.426568 GTCACTGCAAGCGGAGGC 61.427 66.667 8.05 0.00 37.60 4.70
212 213 1.294659 GAAGTCACTGCAAGCGGAGG 61.295 60.000 8.05 0.00 37.60 4.30
213 214 1.294659 GGAAGTCACTGCAAGCGGAG 61.295 60.000 8.05 0.00 37.60 4.63
214 215 1.301716 GGAAGTCACTGCAAGCGGA 60.302 57.895 8.05 0.00 37.60 5.54
215 216 2.328099 GGGAAGTCACTGCAAGCGG 61.328 63.158 0.00 0.00 37.60 5.52
216 217 2.328099 GGGGAAGTCACTGCAAGCG 61.328 63.158 0.00 0.00 37.60 4.68
217 218 2.328099 CGGGGAAGTCACTGCAAGC 61.328 63.158 0.00 0.00 37.60 4.01
218 219 3.972227 CGGGGAAGTCACTGCAAG 58.028 61.111 0.00 0.00 42.29 4.01
222 223 2.266055 GGAGCGGGGAAGTCACTG 59.734 66.667 0.00 0.00 0.00 3.66
223 224 2.203788 TGGAGCGGGGAAGTCACT 60.204 61.111 0.00 0.00 0.00 3.41
224 225 2.266055 CTGGAGCGGGGAAGTCAC 59.734 66.667 0.00 0.00 0.00 3.67
225 226 3.706373 GCTGGAGCGGGGAAGTCA 61.706 66.667 0.00 0.00 0.00 3.41
245 246 4.731773 GCTCAAATAAGGGCGAGTTCATTG 60.732 45.833 0.00 0.00 0.00 2.82
257 258 6.750501 CACATTGATGTCTTGCTCAAATAAGG 59.249 38.462 0.00 0.00 39.39 2.69
258 259 6.750501 CCACATTGATGTCTTGCTCAAATAAG 59.249 38.462 0.00 0.00 39.39 1.73
260 261 5.125900 CCCACATTGATGTCTTGCTCAAATA 59.874 40.000 0.00 0.00 39.39 1.40
261 262 4.081862 CCCACATTGATGTCTTGCTCAAAT 60.082 41.667 0.00 0.00 39.39 2.32
264 265 2.040145 TCCCACATTGATGTCTTGCTCA 59.960 45.455 0.00 0.00 39.39 4.26
265 266 2.715046 TCCCACATTGATGTCTTGCTC 58.285 47.619 0.00 0.00 39.39 4.26
266 267 2.821969 GTTCCCACATTGATGTCTTGCT 59.178 45.455 0.00 0.00 39.39 3.91
270 272 1.628340 TCGGTTCCCACATTGATGTCT 59.372 47.619 0.00 0.00 39.39 3.41
281 283 3.236896 AGAACTAGAAACTCGGTTCCCA 58.763 45.455 0.00 0.00 35.92 4.37
290 292 6.183360 CCGGTGAAAACAAAGAACTAGAAACT 60.183 38.462 0.00 0.00 0.00 2.66
291 293 5.969435 CCGGTGAAAACAAAGAACTAGAAAC 59.031 40.000 0.00 0.00 0.00 2.78
304 307 0.820871 AGCAAAAGCCGGTGAAAACA 59.179 45.000 1.90 0.00 0.00 2.83
316 319 1.600413 GCAACAGGAACCGAGCAAAAG 60.600 52.381 0.00 0.00 0.00 2.27
322 325 4.766404 ATAAAAAGCAACAGGAACCGAG 57.234 40.909 0.00 0.00 0.00 4.63
325 328 5.470368 GGAGAATAAAAAGCAACAGGAACC 58.530 41.667 0.00 0.00 0.00 3.62
329 332 4.089361 AGGGGAGAATAAAAAGCAACAGG 58.911 43.478 0.00 0.00 0.00 4.00
331 334 6.493189 AAAAGGGGAGAATAAAAAGCAACA 57.507 33.333 0.00 0.00 0.00 3.33
520 543 7.077050 TGGGAAAAATCATGGATTTGAGTTT 57.923 32.000 5.07 0.00 43.47 2.66
521 544 6.684897 TGGGAAAAATCATGGATTTGAGTT 57.315 33.333 5.07 0.00 40.77 3.01
522 545 6.684897 TTGGGAAAAATCATGGATTTGAGT 57.315 33.333 5.07 0.00 40.77 3.41
523 546 8.570068 AATTTGGGAAAAATCATGGATTTGAG 57.430 30.769 5.07 0.00 40.77 3.02
528 551 7.460071 TCACAAATTTGGGAAAAATCATGGAT 58.540 30.769 20.74 0.00 37.73 3.41
593 623 4.926238 TGCGCATTTGGAAAATTTTACGAT 59.074 33.333 5.66 2.77 0.00 3.73
598 628 4.379652 AGTCTGCGCATTTGGAAAATTTT 58.620 34.783 12.24 2.28 0.00 1.82
601 631 3.665745 AAGTCTGCGCATTTGGAAAAT 57.334 38.095 12.24 0.00 0.00 1.82
652 682 8.241367 GGACAAGTTGACCATTTTATCGTTTAT 58.759 33.333 17.93 0.00 32.46 1.40
654 684 6.039941 TGGACAAGTTGACCATTTTATCGTTT 59.960 34.615 20.98 0.00 37.28 3.60
656 686 5.067273 TGGACAAGTTGACCATTTTATCGT 58.933 37.500 20.98 0.00 37.28 3.73
659 689 5.600484 TGGTTGGACAAGTTGACCATTTTAT 59.400 36.000 24.45 0.00 41.46 1.40
661 691 3.772025 TGGTTGGACAAGTTGACCATTTT 59.228 39.130 24.45 0.00 41.46 1.82
663 693 3.025322 TGGTTGGACAAGTTGACCATT 57.975 42.857 24.45 0.00 41.46 3.16
664 694 2.746279 TGGTTGGACAAGTTGACCAT 57.254 45.000 24.45 0.00 41.46 3.55
703 736 4.135153 CCTGGGGTCACTCGCTCG 62.135 72.222 0.00 0.00 0.00 5.03
704 737 1.617947 ATTCCTGGGGTCACTCGCTC 61.618 60.000 0.00 0.00 0.00 5.03
717 750 0.110238 CCAACACACGCGAATTCCTG 60.110 55.000 15.93 0.68 0.00 3.86
720 753 1.442017 GCCCAACACACGCGAATTC 60.442 57.895 15.93 0.00 0.00 2.17
721 754 2.642700 GCCCAACACACGCGAATT 59.357 55.556 15.93 0.00 0.00 2.17
749 782 1.014352 CGGCAAGTTACCCAGCATAC 58.986 55.000 0.00 0.00 0.00 2.39
754 787 1.175983 TTTGCCGGCAAGTTACCCAG 61.176 55.000 37.88 0.00 37.24 4.45
769 802 3.896863 CTTCTGCCGCCGGTTTTGC 62.897 63.158 4.45 1.07 0.00 3.68
771 804 2.112297 TCTTCTGCCGCCGGTTTT 59.888 55.556 4.45 0.00 0.00 2.43
788 827 4.115270 GGGACAAGTCTCCCGAGT 57.885 61.111 0.00 0.00 40.86 4.18
820 859 9.270640 TGGTCATTCGAATTTTGAATTTTGATT 57.729 25.926 8.21 0.00 33.91 2.57
821 860 8.830201 TGGTCATTCGAATTTTGAATTTTGAT 57.170 26.923 8.21 0.00 33.91 2.57
856 895 2.484287 ATATATGGTGCCGGGCTGCC 62.484 60.000 21.46 21.16 0.00 4.85
857 896 0.251916 TATATATGGTGCCGGGCTGC 59.748 55.000 21.46 12.76 0.00 5.25
858 897 4.415881 TTATATATATGGTGCCGGGCTG 57.584 45.455 21.46 0.00 0.00 4.85
859 898 4.384868 GGTTTATATATATGGTGCCGGGCT 60.385 45.833 21.46 1.61 0.00 5.19
860 899 3.881089 GGTTTATATATATGGTGCCGGGC 59.119 47.826 13.32 13.32 0.00 6.13
861 900 4.457466 GGGTTTATATATATGGTGCCGGG 58.543 47.826 2.18 0.00 0.00 5.73
862 901 4.165372 AGGGGTTTATATATATGGTGCCGG 59.835 45.833 5.44 0.00 0.00 6.13
872 911 9.954992 GTTAGGGATAGAGAGGGGTTTATATAT 57.045 37.037 0.00 0.00 0.00 0.86
879 918 2.090096 GGGTTAGGGATAGAGAGGGGTT 60.090 54.545 0.00 0.00 0.00 4.11
881 920 1.508185 TGGGTTAGGGATAGAGAGGGG 59.492 57.143 0.00 0.00 0.00 4.79
886 930 4.907875 TGGAGAATTGGGTTAGGGATAGAG 59.092 45.833 0.00 0.00 0.00 2.43
895 939 2.922955 TGGTGGATGGAGAATTGGGTTA 59.077 45.455 0.00 0.00 0.00 2.85
896 940 1.715931 TGGTGGATGGAGAATTGGGTT 59.284 47.619 0.00 0.00 0.00 4.11
897 941 1.381867 TGGTGGATGGAGAATTGGGT 58.618 50.000 0.00 0.00 0.00 4.51
898 942 2.176364 AGATGGTGGATGGAGAATTGGG 59.824 50.000 0.00 0.00 0.00 4.12
899 943 3.117776 TCAGATGGTGGATGGAGAATTGG 60.118 47.826 0.00 0.00 0.00 3.16
934 978 0.405585 TGGCAAGGAAGGAAGGAAGG 59.594 55.000 0.00 0.00 0.00 3.46
941 985 0.041090 GGGGATTTGGCAAGGAAGGA 59.959 55.000 0.00 0.00 0.00 3.36
944 988 2.187100 GATTGGGGATTTGGCAAGGAA 58.813 47.619 0.00 0.00 0.00 3.36
945 989 1.622173 GGATTGGGGATTTGGCAAGGA 60.622 52.381 0.00 0.00 0.00 3.36
947 991 1.570803 TGGATTGGGGATTTGGCAAG 58.429 50.000 0.00 0.00 0.00 4.01
948 992 1.627834 GTTGGATTGGGGATTTGGCAA 59.372 47.619 0.00 0.00 0.00 4.52
950 994 1.274712 TGTTGGATTGGGGATTTGGC 58.725 50.000 0.00 0.00 0.00 4.52
952 996 5.221702 ACTCTTTTGTTGGATTGGGGATTTG 60.222 40.000 0.00 0.00 0.00 2.32
953 997 4.907269 ACTCTTTTGTTGGATTGGGGATTT 59.093 37.500 0.00 0.00 0.00 2.17
955 999 4.132122 ACTCTTTTGTTGGATTGGGGAT 57.868 40.909 0.00 0.00 0.00 3.85
956 1000 3.611025 ACTCTTTTGTTGGATTGGGGA 57.389 42.857 0.00 0.00 0.00 4.81
957 1001 3.305335 CGAACTCTTTTGTTGGATTGGGG 60.305 47.826 0.00 0.00 0.00 4.96
958 1002 3.857010 GCGAACTCTTTTGTTGGATTGGG 60.857 47.826 0.00 0.00 0.00 4.12
959 1003 3.243367 TGCGAACTCTTTTGTTGGATTGG 60.243 43.478 0.00 0.00 0.00 3.16
960 1004 3.730715 GTGCGAACTCTTTTGTTGGATTG 59.269 43.478 0.00 0.00 0.00 2.67
961 1005 3.243401 GGTGCGAACTCTTTTGTTGGATT 60.243 43.478 0.00 0.00 0.00 3.01
962 1006 2.293399 GGTGCGAACTCTTTTGTTGGAT 59.707 45.455 0.00 0.00 0.00 3.41
963 1007 1.673920 GGTGCGAACTCTTTTGTTGGA 59.326 47.619 0.00 0.00 0.00 3.53
964 1008 1.596954 CGGTGCGAACTCTTTTGTTGG 60.597 52.381 0.00 0.00 0.00 3.77
965 1009 1.741993 CGGTGCGAACTCTTTTGTTG 58.258 50.000 0.00 0.00 0.00 3.33
966 1010 0.028902 GCGGTGCGAACTCTTTTGTT 59.971 50.000 0.00 0.00 0.00 2.83
967 1011 1.647084 GCGGTGCGAACTCTTTTGT 59.353 52.632 0.00 0.00 0.00 2.83
968 1012 1.082104 GGCGGTGCGAACTCTTTTG 60.082 57.895 0.00 0.00 0.00 2.44
969 1013 2.604174 CGGCGGTGCGAACTCTTTT 61.604 57.895 0.00 0.00 0.00 2.27
970 1014 3.041940 CGGCGGTGCGAACTCTTT 61.042 61.111 0.00 0.00 0.00 2.52
1148 1203 4.157120 GCATACCTCGTGCCGGGT 62.157 66.667 2.18 10.68 36.61 5.28
1217 1300 7.225784 TGCAGCAAATAAAAAGAGAATACCA 57.774 32.000 0.00 0.00 0.00 3.25
1218 1301 6.254373 GCTGCAGCAAATAAAAAGAGAATACC 59.746 38.462 33.36 0.00 41.59 2.73
1219 1302 7.008992 CAGCTGCAGCAAATAAAAAGAGAATAC 59.991 37.037 38.24 3.98 45.16 1.89
1220 1303 7.031372 CAGCTGCAGCAAATAAAAAGAGAATA 58.969 34.615 38.24 0.00 45.16 1.75
1221 1304 5.867716 CAGCTGCAGCAAATAAAAAGAGAAT 59.132 36.000 38.24 10.80 45.16 2.40
1222 1305 5.224888 CAGCTGCAGCAAATAAAAAGAGAA 58.775 37.500 38.24 0.00 45.16 2.87
1224 1307 3.367025 GCAGCTGCAGCAAATAAAAAGAG 59.633 43.478 38.24 14.23 45.16 2.85
1226 1309 2.091588 CGCAGCTGCAGCAAATAAAAAG 59.908 45.455 38.24 17.08 45.16 2.27
1232 1315 2.987547 ACCGCAGCTGCAGCAAAT 60.988 55.556 38.24 17.55 45.16 2.32
1273 1373 1.720694 CTCCTTCTCCTCGCTCGTCC 61.721 65.000 0.00 0.00 0.00 4.79
1276 1379 1.444119 CTCCTCCTTCTCCTCGCTCG 61.444 65.000 0.00 0.00 0.00 5.03
1280 1383 1.098712 CGTCCTCCTCCTTCTCCTCG 61.099 65.000 0.00 0.00 0.00 4.63
1281 1384 1.388837 GCGTCCTCCTCCTTCTCCTC 61.389 65.000 0.00 0.00 0.00 3.71
1282 1385 1.380650 GCGTCCTCCTCCTTCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
1287 1390 2.756283 CTCCGCGTCCTCCTCCTT 60.756 66.667 4.92 0.00 0.00 3.36
1509 1658 1.139095 CGGTAGAACCACGAGGAGC 59.861 63.158 5.68 0.00 38.47 4.70
1527 1679 2.866762 AGACAACACGAAGAAAGCAGTC 59.133 45.455 0.00 0.00 0.00 3.51
1570 1752 0.465705 GCATCGATCCAGACCCAGAA 59.534 55.000 0.00 0.00 0.00 3.02
1575 1757 0.879400 CAGCAGCATCGATCCAGACC 60.879 60.000 0.00 0.00 0.00 3.85
1576 1758 1.497223 GCAGCAGCATCGATCCAGAC 61.497 60.000 0.00 0.00 41.58 3.51
1596 1778 0.608856 AAGGCATCCATCACACGCAA 60.609 50.000 0.00 0.00 0.00 4.85
1707 1899 2.037641 TGCAGGCGATGTATGCTATCTT 59.962 45.455 0.00 0.00 40.62 2.40
1708 1900 1.620323 TGCAGGCGATGTATGCTATCT 59.380 47.619 0.00 0.00 40.62 1.98
1709 1901 1.728971 GTGCAGGCGATGTATGCTATC 59.271 52.381 0.00 0.00 40.62 2.08
1710 1902 1.345741 AGTGCAGGCGATGTATGCTAT 59.654 47.619 0.00 0.00 40.62 2.97
1711 1903 0.752658 AGTGCAGGCGATGTATGCTA 59.247 50.000 0.00 0.00 40.62 3.49
1712 1904 0.107508 AAGTGCAGGCGATGTATGCT 60.108 50.000 0.00 0.00 40.62 3.79
1713 1905 0.305922 GAAGTGCAGGCGATGTATGC 59.694 55.000 0.00 0.00 40.40 3.14
1714 1906 1.945387 AGAAGTGCAGGCGATGTATG 58.055 50.000 0.00 0.00 0.00 2.39
1815 2008 1.476891 TCAGTATCAAGTCCAGACGGC 59.523 52.381 0.00 0.00 36.20 5.68
1845 2069 0.958822 GAATTGGTCGGTTGCCTGTT 59.041 50.000 0.00 0.00 0.00 3.16
1907 2136 4.922692 CCGAGCATCTTCTTCTATTAGCAG 59.077 45.833 0.00 0.00 0.00 4.24
1958 2187 5.855395 GTGAGAAATGCTGAAATGTCACTTC 59.145 40.000 0.00 0.00 32.19 3.01
1964 2193 6.571150 GCCTTAAGTGAGAAATGCTGAAATGT 60.571 38.462 0.97 0.00 0.00 2.71
1989 2218 2.438434 GGTGGGATGCCGAACAGG 60.438 66.667 0.00 0.00 44.97 4.00
1997 2226 4.408821 TGTGGAGCGGTGGGATGC 62.409 66.667 0.00 0.00 0.00 3.91
1998 2227 2.436646 GTGTGGAGCGGTGGGATG 60.437 66.667 0.00 0.00 0.00 3.51
1999 2228 2.607750 AGTGTGGAGCGGTGGGAT 60.608 61.111 0.00 0.00 0.00 3.85
2000 2229 3.311110 GAGTGTGGAGCGGTGGGA 61.311 66.667 0.00 0.00 0.00 4.37
2001 2230 4.394712 GGAGTGTGGAGCGGTGGG 62.395 72.222 0.00 0.00 0.00 4.61
2002 2231 4.394712 GGGAGTGTGGAGCGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
2003 2232 4.742201 CGGGAGTGTGGAGCGGTG 62.742 72.222 0.00 0.00 0.00 4.94
2006 2235 4.803426 GAGCGGGAGTGTGGAGCG 62.803 72.222 0.00 0.00 0.00 5.03
2007 2236 4.459089 GGAGCGGGAGTGTGGAGC 62.459 72.222 0.00 0.00 0.00 4.70
2008 2237 4.135153 CGGAGCGGGAGTGTGGAG 62.135 72.222 0.00 0.00 0.00 3.86
2025 2254 3.254024 TTCAACTCCGCCAGCTCCC 62.254 63.158 0.00 0.00 0.00 4.30
2026 2255 1.743252 CTTCAACTCCGCCAGCTCC 60.743 63.158 0.00 0.00 0.00 4.70
2027 2256 0.603975 AACTTCAACTCCGCCAGCTC 60.604 55.000 0.00 0.00 0.00 4.09
2028 2257 0.685097 TAACTTCAACTCCGCCAGCT 59.315 50.000 0.00 0.00 0.00 4.24
2029 2258 1.519408 TTAACTTCAACTCCGCCAGC 58.481 50.000 0.00 0.00 0.00 4.85
2030 2259 4.561735 TTTTTAACTTCAACTCCGCCAG 57.438 40.909 0.00 0.00 0.00 4.85
2031 2260 5.523438 AATTTTTAACTTCAACTCCGCCA 57.477 34.783 0.00 0.00 0.00 5.69
2032 2261 5.566395 CGTAATTTTTAACTTCAACTCCGCC 59.434 40.000 0.00 0.00 0.00 6.13
2033 2262 5.566395 CCGTAATTTTTAACTTCAACTCCGC 59.434 40.000 0.00 0.00 0.00 5.54
2034 2263 6.890558 TCCGTAATTTTTAACTTCAACTCCG 58.109 36.000 0.00 0.00 0.00 4.63
2035 2264 6.800408 GCTCCGTAATTTTTAACTTCAACTCC 59.200 38.462 0.00 0.00 0.00 3.85
2036 2265 6.518736 CGCTCCGTAATTTTTAACTTCAACTC 59.481 38.462 0.00 0.00 0.00 3.01
2037 2266 6.368213 CGCTCCGTAATTTTTAACTTCAACT 58.632 36.000 0.00 0.00 0.00 3.16
2038 2267 5.566395 CCGCTCCGTAATTTTTAACTTCAAC 59.434 40.000 0.00 0.00 0.00 3.18
2039 2268 5.335035 CCCGCTCCGTAATTTTTAACTTCAA 60.335 40.000 0.00 0.00 0.00 2.69
2040 2269 4.154556 CCCGCTCCGTAATTTTTAACTTCA 59.845 41.667 0.00 0.00 0.00 3.02
2041 2270 4.437794 CCCCGCTCCGTAATTTTTAACTTC 60.438 45.833 0.00 0.00 0.00 3.01
2042 2271 3.441222 CCCCGCTCCGTAATTTTTAACTT 59.559 43.478 0.00 0.00 0.00 2.66
2043 2272 3.011818 CCCCGCTCCGTAATTTTTAACT 58.988 45.455 0.00 0.00 0.00 2.24
2044 2273 2.097954 CCCCCGCTCCGTAATTTTTAAC 59.902 50.000 0.00 0.00 0.00 2.01
2045 2274 2.026449 TCCCCCGCTCCGTAATTTTTAA 60.026 45.455 0.00 0.00 0.00 1.52
2046 2275 1.558756 TCCCCCGCTCCGTAATTTTTA 59.441 47.619 0.00 0.00 0.00 1.52
2047 2276 0.328926 TCCCCCGCTCCGTAATTTTT 59.671 50.000 0.00 0.00 0.00 1.94
2048 2277 0.328926 TTCCCCCGCTCCGTAATTTT 59.671 50.000 0.00 0.00 0.00 1.82
2049 2278 0.393402 GTTCCCCCGCTCCGTAATTT 60.393 55.000 0.00 0.00 0.00 1.82
2050 2279 1.222661 GTTCCCCCGCTCCGTAATT 59.777 57.895 0.00 0.00 0.00 1.40
2051 2280 1.968050 CTGTTCCCCCGCTCCGTAAT 61.968 60.000 0.00 0.00 0.00 1.89
2052 2281 2.604079 TGTTCCCCCGCTCCGTAA 60.604 61.111 0.00 0.00 0.00 3.18
2053 2282 3.072468 CTGTTCCCCCGCTCCGTA 61.072 66.667 0.00 0.00 0.00 4.02
2074 2303 2.131183 GAAATTCGAGGATCTGCGGAG 58.869 52.381 0.00 0.00 0.00 4.63
2075 2304 1.480545 TGAAATTCGAGGATCTGCGGA 59.519 47.619 0.00 0.00 0.00 5.54
2076 2305 1.594862 GTGAAATTCGAGGATCTGCGG 59.405 52.381 7.66 0.00 0.00 5.69
2077 2306 1.256376 CGTGAAATTCGAGGATCTGCG 59.744 52.381 0.00 0.00 0.00 5.18
2078 2307 1.594862 CCGTGAAATTCGAGGATCTGC 59.405 52.381 1.10 0.00 0.00 4.26
2079 2308 3.119291 CTCCGTGAAATTCGAGGATCTG 58.881 50.000 9.13 0.00 0.00 2.90
2080 2309 2.482142 GCTCCGTGAAATTCGAGGATCT 60.482 50.000 9.13 0.00 0.00 2.75
2081 2310 1.861575 GCTCCGTGAAATTCGAGGATC 59.138 52.381 9.13 3.02 0.00 3.36
2082 2311 1.207089 TGCTCCGTGAAATTCGAGGAT 59.793 47.619 9.13 0.00 0.00 3.24
2083 2312 0.606096 TGCTCCGTGAAATTCGAGGA 59.394 50.000 8.53 8.53 0.00 3.71
2084 2313 0.721718 GTGCTCCGTGAAATTCGAGG 59.278 55.000 0.95 0.95 0.00 4.63
2085 2314 0.366871 CGTGCTCCGTGAAATTCGAG 59.633 55.000 0.00 0.00 0.00 4.04
2086 2315 1.011968 CCGTGCTCCGTGAAATTCGA 61.012 55.000 0.00 0.00 33.66 3.71
2087 2316 1.419922 CCGTGCTCCGTGAAATTCG 59.580 57.895 0.00 0.00 33.66 3.34
2088 2317 1.644786 CCCCGTGCTCCGTGAAATTC 61.645 60.000 0.00 0.00 33.66 2.17
2089 2318 1.674322 CCCCGTGCTCCGTGAAATT 60.674 57.895 0.00 0.00 33.66 1.82
2090 2319 2.046314 CCCCGTGCTCCGTGAAAT 60.046 61.111 0.00 0.00 33.66 2.17
2091 2320 3.109592 AACCCCGTGCTCCGTGAAA 62.110 57.895 0.00 0.00 33.66 2.69
2092 2321 3.552384 AACCCCGTGCTCCGTGAA 61.552 61.111 0.00 0.00 33.66 3.18
2093 2322 4.308458 CAACCCCGTGCTCCGTGA 62.308 66.667 0.00 0.00 33.66 4.35
2111 2340 3.349022 TGTAAATTAAGGGCCTGTTCGG 58.651 45.455 6.92 0.00 0.00 4.30
2112 2341 5.576447 AATGTAAATTAAGGGCCTGTTCG 57.424 39.130 6.92 0.00 0.00 3.95
2113 2342 9.884636 ATAAAAATGTAAATTAAGGGCCTGTTC 57.115 29.630 6.92 0.00 0.00 3.18
2114 2343 9.665719 CATAAAAATGTAAATTAAGGGCCTGTT 57.334 29.630 6.92 0.00 0.00 3.16
2115 2344 9.041354 TCATAAAAATGTAAATTAAGGGCCTGT 57.959 29.630 6.92 0.00 0.00 4.00
2163 2400 4.101585 TGCACTATCTGTAGCTGGCTAAAT 59.898 41.667 3.73 2.19 0.00 1.40
2164 2401 3.450817 TGCACTATCTGTAGCTGGCTAAA 59.549 43.478 3.73 0.00 0.00 1.85
2165 2402 3.031013 TGCACTATCTGTAGCTGGCTAA 58.969 45.455 3.73 0.00 0.00 3.09
2166 2403 2.666317 TGCACTATCTGTAGCTGGCTA 58.334 47.619 0.00 0.00 0.00 3.93
2168 2405 2.411904 GATGCACTATCTGTAGCTGGC 58.588 52.381 0.00 0.00 32.83 4.85
2169 2406 2.294512 TCGATGCACTATCTGTAGCTGG 59.705 50.000 0.00 0.00 33.44 4.85
2170 2407 3.243201 TGTCGATGCACTATCTGTAGCTG 60.243 47.826 0.00 0.00 33.44 4.24
2173 2410 4.782156 CTCTGTCGATGCACTATCTGTAG 58.218 47.826 0.00 0.00 33.44 2.74
2174 2411 3.003793 GCTCTGTCGATGCACTATCTGTA 59.996 47.826 0.00 0.00 33.44 2.74
2175 2412 2.223688 GCTCTGTCGATGCACTATCTGT 60.224 50.000 0.00 0.00 33.44 3.41
2176 2413 2.034432 AGCTCTGTCGATGCACTATCTG 59.966 50.000 0.00 0.00 33.44 2.90
2178 2415 2.293122 AGAGCTCTGTCGATGCACTATC 59.707 50.000 17.42 0.00 0.00 2.08
2179 2416 2.293122 GAGAGCTCTGTCGATGCACTAT 59.707 50.000 23.91 0.00 0.00 2.12
2181 2418 0.455410 GAGAGCTCTGTCGATGCACT 59.545 55.000 23.91 0.00 0.00 4.40
2182 2419 0.527385 GGAGAGCTCTGTCGATGCAC 60.527 60.000 23.91 2.49 0.00 4.57
2183 2420 1.670949 GGGAGAGCTCTGTCGATGCA 61.671 60.000 23.91 0.00 0.00 3.96
2184 2421 1.067250 GGGAGAGCTCTGTCGATGC 59.933 63.158 23.91 4.15 0.00 3.91
2185 2422 1.358402 CGGGAGAGCTCTGTCGATG 59.642 63.158 23.91 0.60 0.00 3.84
2186 2423 2.485795 GCGGGAGAGCTCTGTCGAT 61.486 63.158 28.62 5.16 0.00 3.59
2187 2424 3.134792 GCGGGAGAGCTCTGTCGA 61.135 66.667 28.62 0.00 0.00 4.20
2188 2425 2.676016 GATGCGGGAGAGCTCTGTCG 62.676 65.000 23.91 23.50 38.13 4.35
2189 2426 1.067250 GATGCGGGAGAGCTCTGTC 59.933 63.158 23.91 12.97 38.13 3.51
2190 2427 1.260538 TTGATGCGGGAGAGCTCTGT 61.261 55.000 23.91 0.00 38.13 3.41
2194 2431 1.123077 TATGTTGATGCGGGAGAGCT 58.877 50.000 0.00 0.00 38.13 4.09
2195 2432 2.175878 ATATGTTGATGCGGGAGAGC 57.824 50.000 0.00 0.00 37.71 4.09
2196 2433 5.300752 ACTAAATATGTTGATGCGGGAGAG 58.699 41.667 0.00 0.00 0.00 3.20
2197 2434 5.070446 AGACTAAATATGTTGATGCGGGAGA 59.930 40.000 0.00 0.00 0.00 3.71
2198 2435 5.300752 AGACTAAATATGTTGATGCGGGAG 58.699 41.667 0.00 0.00 0.00 4.30
2199 2436 5.290493 AGACTAAATATGTTGATGCGGGA 57.710 39.130 0.00 0.00 0.00 5.14
2200 2437 5.120830 GCTAGACTAAATATGTTGATGCGGG 59.879 44.000 0.00 0.00 0.00 6.13
2201 2438 5.696270 TGCTAGACTAAATATGTTGATGCGG 59.304 40.000 0.00 0.00 0.00 5.69
2202 2439 6.128715 CCTGCTAGACTAAATATGTTGATGCG 60.129 42.308 0.00 0.00 0.00 4.73
2203 2440 6.348050 GCCTGCTAGACTAAATATGTTGATGC 60.348 42.308 0.00 0.00 0.00 3.91
2204 2441 6.148480 GGCCTGCTAGACTAAATATGTTGATG 59.852 42.308 0.00 0.00 0.00 3.07
2205 2442 6.234177 GGCCTGCTAGACTAAATATGTTGAT 58.766 40.000 0.00 0.00 0.00 2.57
2206 2443 5.611374 GGCCTGCTAGACTAAATATGTTGA 58.389 41.667 0.00 0.00 0.00 3.18
2207 2444 4.449068 CGGCCTGCTAGACTAAATATGTTG 59.551 45.833 0.00 0.00 0.00 3.33
2208 2445 4.632153 CGGCCTGCTAGACTAAATATGTT 58.368 43.478 0.00 0.00 0.00 2.71
2209 2446 3.555168 GCGGCCTGCTAGACTAAATATGT 60.555 47.826 11.61 0.00 41.73 2.29
2213 2450 0.106894 GGCGGCCTGCTAGACTAAAT 59.893 55.000 12.87 0.00 45.43 1.40
2257 2494 6.524101 ACAAGAACCTGTGTAAACATTGTT 57.476 33.333 0.00 0.00 0.00 2.83
2272 2509 5.902613 TCATCATCCATTGAACAAGAACC 57.097 39.130 0.00 0.00 38.03 3.62
2290 2527 5.180868 GCATCCTTTATGTCCTGTGATCATC 59.819 44.000 0.00 0.00 37.93 2.92
2291 2528 5.068636 GCATCCTTTATGTCCTGTGATCAT 58.931 41.667 0.00 0.00 37.93 2.45
2292 2529 4.080413 TGCATCCTTTATGTCCTGTGATCA 60.080 41.667 0.00 0.00 37.93 2.92
2329 2566 1.068954 GCTTTCTGCCTTTCTGAACCG 60.069 52.381 0.00 0.00 33.23 4.44
2361 2598 8.181904 TGTCAAGATGATATGTAGCAGATGTA 57.818 34.615 0.00 0.00 0.00 2.29
2411 2648 0.038709 GTCTCTGCTTGCTCGACTGT 60.039 55.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.