Multiple sequence alignment - TraesCS2D01G478100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G478100 chr2D 100.000 6588 0 0 1 6588 579589693 579583106 0.000000e+00 12166.0
1 TraesCS2D01G478100 chr2D 84.354 147 22 1 3670 3816 590162797 590162942 6.890000e-30 143.0
2 TraesCS2D01G478100 chr2A 94.857 3850 137 29 2661 6472 717211829 717208003 0.000000e+00 5956.0
3 TraesCS2D01G478100 chr2A 93.412 1867 91 14 527 2370 717213972 717212115 0.000000e+00 2737.0
4 TraesCS2D01G478100 chr2A 92.073 492 25 5 12 499 717214562 717214081 0.000000e+00 680.0
5 TraesCS2D01G478100 chr2A 95.437 263 11 1 2379 2640 717212075 717211813 1.020000e-112 418.0
6 TraesCS2D01G478100 chr2B 94.255 1880 80 14 2137 3989 697578693 697576815 0.000000e+00 2848.0
7 TraesCS2D01G478100 chr2B 94.727 1650 58 10 527 2152 697588279 697586635 0.000000e+00 2538.0
8 TraesCS2D01G478100 chr2B 92.223 1363 69 19 4660 6005 697575941 697574599 0.000000e+00 1895.0
9 TraesCS2D01G478100 chr2B 92.793 555 26 3 3979 4531 697576788 697576246 0.000000e+00 791.0
10 TraesCS2D01G478100 chr2B 90.928 474 24 8 6012 6473 697572225 697571759 2.610000e-173 619.0
11 TraesCS2D01G478100 chr2B 90.583 446 27 5 57 499 697588823 697588390 1.590000e-160 577.0
12 TraesCS2D01G478100 chr2B 85.034 147 21 1 3670 3816 714792379 714792524 1.480000e-31 148.0
13 TraesCS2D01G478100 chr6B 83.007 971 139 14 896 1850 458578296 458579256 0.000000e+00 856.0
14 TraesCS2D01G478100 chr6B 77.606 969 154 33 4708 5660 458582732 458583653 4.520000e-146 529.0
15 TraesCS2D01G478100 chr6B 83.709 577 73 12 2812 3373 458580728 458581298 5.850000e-145 525.0
16 TraesCS2D01G478100 chr6B 85.434 357 49 3 4172 4527 458581855 458582209 1.040000e-97 368.0
17 TraesCS2D01G478100 chr6B 84.211 209 28 4 3426 3629 458581300 458581508 1.450000e-46 198.0
18 TraesCS2D01G478100 chr6B 79.630 216 35 9 3689 3901 213237199 213237408 5.320000e-31 147.0
19 TraesCS2D01G478100 chr6D 82.672 958 136 15 907 1850 294086773 294087714 0.000000e+00 822.0
20 TraesCS2D01G478100 chr6D 78.221 978 145 35 4701 5660 294091370 294092297 1.240000e-156 564.0
21 TraesCS2D01G478100 chr6D 84.429 578 67 13 2812 3373 294089465 294090035 1.250000e-151 547.0
22 TraesCS2D01G478100 chr6D 84.932 365 52 3 4165 4528 294090587 294090949 3.750000e-97 366.0
23 TraesCS2D01G478100 chr6D 85.714 210 24 5 3426 3629 294090037 294090246 4.000000e-52 217.0
24 TraesCS2D01G478100 chr6D 79.167 216 35 10 3689 3901 121167670 121167878 2.480000e-29 141.0
25 TraesCS2D01G478100 chr6D 79.429 175 17 10 527 701 294085793 294085948 9.030000e-19 106.0
26 TraesCS2D01G478100 chr6A 83.207 923 125 16 799 1706 426637599 426636692 0.000000e+00 819.0
27 TraesCS2D01G478100 chr6A 84.083 578 69 13 2812 3373 426634489 426633919 2.700000e-148 536.0
28 TraesCS2D01G478100 chr6A 77.930 947 140 38 4701 5627 426632262 426631365 1.630000e-145 527.0
29 TraesCS2D01G478100 chr6A 85.205 365 51 3 4165 4528 426633376 426633014 8.070000e-99 372.0
30 TraesCS2D01G478100 chr6A 83.010 206 21 6 3426 3629 426633917 426633724 2.440000e-39 174.0
31 TraesCS2D01G478100 chr7D 97.436 117 3 0 6472 6588 154601113 154601229 4.030000e-47 200.0
32 TraesCS2D01G478100 chr7D 93.846 130 5 3 6462 6588 27601330 27601201 6.740000e-45 193.0
33 TraesCS2D01G478100 chr7D 95.690 116 5 0 6473 6588 562627764 562627649 3.140000e-43 187.0
34 TraesCS2D01G478100 chr7D 95.652 115 5 0 6474 6588 422128366 422128480 1.130000e-42 185.0
35 TraesCS2D01G478100 chr4D 96.522 115 4 0 6474 6588 449873795 449873681 2.420000e-44 191.0
36 TraesCS2D01G478100 chr1D 96.522 115 4 0 6474 6588 469464462 469464348 2.420000e-44 191.0
37 TraesCS2D01G478100 chr3A 93.023 129 7 2 6461 6588 11031336 11031463 3.140000e-43 187.0
38 TraesCS2D01G478100 chr5D 95.652 115 5 0 6474 6588 462463849 462463963 1.130000e-42 185.0
39 TraesCS2D01G478100 chr1B 95.652 115 5 0 6474 6588 33006419 33006533 1.130000e-42 185.0
40 TraesCS2D01G478100 chr5A 79.358 218 40 5 3632 3848 199229203 199228990 1.480000e-31 148.0
41 TraesCS2D01G478100 chr5B 77.064 218 44 6 3632 3848 161065870 161066082 3.230000e-23 121.0
42 TraesCS2D01G478100 chrUn 76.995 213 45 4 3654 3864 248129869 248130079 1.160000e-22 119.0
43 TraesCS2D01G478100 chrUn 91.667 48 4 0 3639 3686 228624773 228624820 4.260000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G478100 chr2D 579583106 579589693 6587 True 12166.00 12166 100.000000 1 6588 1 chr2D.!!$R1 6587
1 TraesCS2D01G478100 chr2A 717208003 717214562 6559 True 2447.75 5956 93.944750 12 6472 4 chr2A.!!$R1 6460
2 TraesCS2D01G478100 chr2B 697586635 697588823 2188 True 1557.50 2538 92.655000 57 2152 2 chr2B.!!$R2 2095
3 TraesCS2D01G478100 chr2B 697571759 697578693 6934 True 1538.25 2848 92.549750 2137 6473 4 chr2B.!!$R1 4336
4 TraesCS2D01G478100 chr6B 458578296 458583653 5357 False 495.20 856 82.793400 896 5660 5 chr6B.!!$F2 4764
5 TraesCS2D01G478100 chr6D 294085793 294092297 6504 False 437.00 822 82.566167 527 5660 6 chr6D.!!$F2 5133
6 TraesCS2D01G478100 chr6A 426631365 426637599 6234 True 485.60 819 82.687000 799 5627 5 chr6A.!!$R1 4828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 284 0.233332 GTTTGCGTGTGCTGTCTCTC 59.767 55.000 0.00 0.00 43.34 3.20 F
952 1729 0.954452 CAGTTGGTTCTTGGAGGTGC 59.046 55.000 0.00 0.00 0.00 5.01 F
1614 2402 1.134560 CTTCCTACTTTCGAGACCCCG 59.865 57.143 0.00 0.00 0.00 5.73 F
2454 4208 2.130272 TGGTGTGCACTGTTTACCAA 57.870 45.000 20.33 7.25 38.39 3.67 F
4037 6192 0.036875 ACCTTCCAGGCAAGCTGTAC 59.963 55.000 0.00 0.00 39.63 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 2285 1.798813 GTTTCTTCAATCGGCAGTCGT 59.201 47.619 0.00 0.0 40.32 4.34 R
2894 4955 1.909700 TTTGGCACTGAAGGCTTAGG 58.090 50.000 0.00 0.0 34.73 2.69 R
3250 5326 4.389772 GCGCATGCACAAGGAATC 57.610 55.556 19.57 0.0 42.15 2.52 R
4315 6539 1.476085 CTCACAAATAAATGCGCCCCA 59.524 47.619 4.18 0.0 0.00 4.96 R
5874 8810 0.317799 GCCACCATGTGCATTTGACA 59.682 50.000 0.00 0.0 31.34 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.351244 TGCATCGGCTTCGTCTCCT 61.351 57.895 0.00 0.00 41.91 3.69
47 48 1.961180 ATCGGCTTCGTCTCCTTGGG 61.961 60.000 0.00 0.00 35.06 4.12
48 49 2.436824 GGCTTCGTCTCCTTGGGC 60.437 66.667 0.00 0.00 0.00 5.36
49 50 2.436824 GCTTCGTCTCCTTGGGCC 60.437 66.667 0.00 0.00 0.00 5.80
141 144 2.032620 GGATTCTGACGCCCTCTCTTA 58.967 52.381 0.00 0.00 0.00 2.10
147 150 2.428890 CTGACGCCCTCTCTTAGTTCAT 59.571 50.000 0.00 0.00 0.00 2.57
281 284 0.233332 GTTTGCGTGTGCTGTCTCTC 59.767 55.000 0.00 0.00 43.34 3.20
312 316 0.966179 AATGCGGGGGTTTTCTTGAC 59.034 50.000 0.00 0.00 0.00 3.18
376 380 5.221244 TGTGGTGATGATAATACGACTGGAG 60.221 44.000 0.00 0.00 0.00 3.86
377 381 4.893524 TGGTGATGATAATACGACTGGAGT 59.106 41.667 0.00 0.00 0.00 3.85
378 382 5.009710 TGGTGATGATAATACGACTGGAGTC 59.990 44.000 0.00 0.00 41.47 3.36
379 383 5.241949 GGTGATGATAATACGACTGGAGTCT 59.758 44.000 5.30 0.00 42.66 3.24
380 384 6.146216 GTGATGATAATACGACTGGAGTCTG 58.854 44.000 5.30 2.01 42.66 3.51
381 385 5.241728 TGATGATAATACGACTGGAGTCTGG 59.758 44.000 5.30 0.00 42.66 3.86
382 386 4.788679 TGATAATACGACTGGAGTCTGGA 58.211 43.478 5.30 0.00 42.66 3.86
383 387 4.579340 TGATAATACGACTGGAGTCTGGAC 59.421 45.833 5.30 0.00 42.66 4.02
412 416 5.963004 TGCTTTTGATTATACGCGAAATGTC 59.037 36.000 15.93 5.84 0.00 3.06
442 446 6.603237 TCTGGATGATATTTTTAGTGCACG 57.397 37.500 12.01 0.00 0.00 5.34
447 451 8.773645 TGGATGATATTTTTAGTGCACGATTAG 58.226 33.333 12.01 0.00 0.00 1.73
455 459 5.767816 TTAGTGCACGATTAGCATCTCTA 57.232 39.130 12.01 0.00 44.79 2.43
499 508 5.909621 AACGGATACACTAGTACACACAT 57.090 39.130 0.00 0.00 31.96 3.21
500 509 5.909621 ACGGATACACTAGTACACACATT 57.090 39.130 0.00 0.00 31.96 2.71
501 510 5.888105 ACGGATACACTAGTACACACATTC 58.112 41.667 0.00 0.00 31.96 2.67
502 511 4.968181 CGGATACACTAGTACACACATTCG 59.032 45.833 0.00 0.00 31.96 3.34
504 513 5.163581 GGATACACTAGTACACACATTCGGT 60.164 44.000 0.00 0.00 31.96 4.69
505 514 5.647589 ATACACTAGTACACACATTCGGTG 58.352 41.667 0.00 0.00 42.39 4.94
507 516 6.375174 ATACACTAGTACACACATTCGGTGTA 59.625 38.462 0.00 0.00 46.94 2.90
519 528 7.441890 CACATTCGGTGTATACTAGATCTCT 57.558 40.000 0.00 0.00 42.75 3.10
520 529 8.549338 CACATTCGGTGTATACTAGATCTCTA 57.451 38.462 0.00 0.00 42.75 2.43
522 531 9.001542 ACATTCGGTGTATACTAGATCTCTAAC 57.998 37.037 0.00 0.00 39.91 2.34
523 532 7.649370 TTCGGTGTATACTAGATCTCTAACG 57.351 40.000 0.00 0.00 0.00 3.18
524 533 6.986250 TCGGTGTATACTAGATCTCTAACGA 58.014 40.000 0.00 0.00 0.00 3.85
525 534 7.609960 TCGGTGTATACTAGATCTCTAACGAT 58.390 38.462 0.00 0.00 0.00 3.73
572 669 5.009210 GCATTGGGTGTTAACAAGTCAGTAA 59.991 40.000 10.51 0.13 0.00 2.24
577 674 8.927675 TGGGTGTTAACAAGTCAGTAAATATT 57.072 30.769 10.51 0.00 0.00 1.28
580 677 8.715088 GGTGTTAACAAGTCAGTAAATATTCGT 58.285 33.333 10.51 0.00 0.00 3.85
666 763 5.825593 TTCAGAGAAGTTCCAGTTGGTAT 57.174 39.130 0.00 0.00 36.34 2.73
830 1605 2.638480 AGCAGTTACACAGCTTTCCA 57.362 45.000 0.00 0.00 37.73 3.53
910 1686 5.585047 GCTAGGCTGCTAGCTTAACTTTTTA 59.415 40.000 17.23 0.00 46.32 1.52
945 1721 9.474920 TTTATGCTTTTTATCAGTTGGTTCTTG 57.525 29.630 0.00 0.00 0.00 3.02
952 1729 0.954452 CAGTTGGTTCTTGGAGGTGC 59.046 55.000 0.00 0.00 0.00 5.01
964 1741 2.108168 TGGAGGTGCCACTATCTGTAC 58.892 52.381 0.00 0.00 43.33 2.90
1105 1884 4.801330 TCACCAGTGTTGACGAATCTAT 57.199 40.909 0.00 0.00 0.00 1.98
1356 2135 6.032956 TCGGATCACTGTAAAAAGAAGCTA 57.967 37.500 0.00 0.00 0.00 3.32
1497 2285 3.947196 ACACATTGCAGTTGTCTTCTTCA 59.053 39.130 1.68 0.00 0.00 3.02
1519 2307 2.159787 CGACTGCCGATTGAAGAAACAG 60.160 50.000 0.00 0.00 41.76 3.16
1520 2308 2.154462 ACTGCCGATTGAAGAAACAGG 58.846 47.619 0.00 0.00 0.00 4.00
1614 2402 1.134560 CTTCCTACTTTCGAGACCCCG 59.865 57.143 0.00 0.00 0.00 5.73
1680 2468 8.233190 CAGAGAGGTAATTTCTGTTTTAGCAAG 58.767 37.037 0.00 0.00 34.92 4.01
1696 2484 6.785488 TTAGCAAGTATGTCTCACACTTTG 57.215 37.500 0.00 0.00 30.20 2.77
1716 2504 9.844790 CACTTTGTATTGATTTATTTGCTGAGA 57.155 29.630 0.00 0.00 0.00 3.27
2305 3105 5.277825 TCTGTTTTTACTTGCACCATTTCG 58.722 37.500 0.00 0.00 0.00 3.46
2454 4208 2.130272 TGGTGTGCACTGTTTACCAA 57.870 45.000 20.33 7.25 38.39 3.67
2514 4268 3.270877 CCTACCTTTGGCATACTGACAC 58.729 50.000 0.00 0.00 33.32 3.67
2640 4440 6.845758 TCCTTCAAAGATTGCATCATCTTT 57.154 33.333 17.06 17.06 45.03 2.52
2641 4441 6.860080 TCCTTCAAAGATTGCATCATCTTTC 58.140 36.000 19.09 0.00 43.06 2.62
2642 4442 6.662234 TCCTTCAAAGATTGCATCATCTTTCT 59.338 34.615 19.09 2.41 43.06 2.52
2643 4443 7.177921 TCCTTCAAAGATTGCATCATCTTTCTT 59.822 33.333 19.09 1.80 43.06 2.52
2644 4444 7.817962 CCTTCAAAGATTGCATCATCTTTCTTT 59.182 33.333 19.09 8.67 43.06 2.52
2645 4445 8.752766 TTCAAAGATTGCATCATCTTTCTTTC 57.247 30.769 19.09 0.00 43.06 2.62
2646 4446 8.118976 TCAAAGATTGCATCATCTTTCTTTCT 57.881 30.769 19.09 0.58 43.06 2.52
2647 4447 8.582437 TCAAAGATTGCATCATCTTTCTTTCTT 58.418 29.630 19.09 0.00 43.06 2.52
2648 4448 9.204570 CAAAGATTGCATCATCTTTCTTTCTTT 57.795 29.630 19.09 0.09 43.06 2.52
2649 4449 9.774413 AAAGATTGCATCATCTTTCTTTCTTTT 57.226 25.926 17.06 0.00 41.69 2.27
2650 4450 8.758633 AGATTGCATCATCTTTCTTTCTTTTG 57.241 30.769 0.00 0.00 0.00 2.44
2651 4451 7.817962 AGATTGCATCATCTTTCTTTCTTTTGG 59.182 33.333 0.00 0.00 0.00 3.28
2652 4452 5.786311 TGCATCATCTTTCTTTCTTTTGGG 58.214 37.500 0.00 0.00 0.00 4.12
2653 4453 5.173664 GCATCATCTTTCTTTCTTTTGGGG 58.826 41.667 0.00 0.00 0.00 4.96
2654 4454 5.727434 CATCATCTTTCTTTCTTTTGGGGG 58.273 41.667 0.00 0.00 0.00 5.40
2671 4471 3.808466 GGGGGAGAAAAAGATTGCATC 57.192 47.619 0.00 0.00 0.00 3.91
2672 4472 3.099141 GGGGGAGAAAAAGATTGCATCA 58.901 45.455 0.00 0.00 0.00 3.07
2673 4473 3.708121 GGGGGAGAAAAAGATTGCATCAT 59.292 43.478 0.00 0.00 0.00 2.45
2674 4474 4.202192 GGGGGAGAAAAAGATTGCATCATC 60.202 45.833 0.00 0.00 0.00 2.92
2675 4475 4.648307 GGGGAGAAAAAGATTGCATCATCT 59.352 41.667 0.00 0.00 0.00 2.90
2676 4476 5.128335 GGGGAGAAAAAGATTGCATCATCTT 59.872 40.000 7.67 7.67 38.65 2.40
2684 4484 4.084287 AGATTGCATCATCTTGTTGTGGT 58.916 39.130 0.00 0.00 0.00 4.16
2894 4955 3.826729 AGTTCCTGCCATGGACTTTTTAC 59.173 43.478 18.40 3.89 35.58 2.01
3187 5263 5.008415 CCAGAATGCATATGTCAGTCTTTCC 59.992 44.000 20.09 2.87 36.84 3.13
3250 5326 1.576356 GAGATTGCCTAGCAGAACCG 58.424 55.000 0.00 0.00 40.61 4.44
3535 5611 1.593479 GCGGGGTATTAGTCGGCAC 60.593 63.158 0.00 0.00 0.00 5.01
3582 5662 0.548510 AAGCTCTTGGTATGGCCCTC 59.451 55.000 0.00 0.00 36.04 4.30
3864 5970 8.947115 GTTTGACTTAGGACAAACTTATATGCT 58.053 33.333 20.07 0.00 46.40 3.79
4037 6192 0.036875 ACCTTCCAGGCAAGCTGTAC 59.963 55.000 0.00 0.00 39.63 2.90
4100 6255 9.237846 GTTGAACCTGTTTCTTTCTATTTCAAG 57.762 33.333 0.00 0.00 34.97 3.02
4120 6302 7.384439 TCAAGTTCAATTAATACGGCAATGA 57.616 32.000 0.00 0.00 0.00 2.57
4639 7397 3.018856 TGAATGGCTACATTTGAGCTGG 58.981 45.455 0.00 0.00 46.89 4.85
5172 8082 9.154847 GCAAATAAAGCCATTTGAAGAACTTAT 57.845 29.630 16.18 0.00 44.96 1.73
5266 8184 6.315891 GTCGTACACTAGTGAATCTAAGGACT 59.684 42.308 29.30 4.71 0.00 3.85
5358 8284 4.642429 ACCTTATGTTGAACTGTGTCTCC 58.358 43.478 0.00 0.00 0.00 3.71
5370 8296 1.017387 GTGTCTCCGCAAATCCATCC 58.983 55.000 0.00 0.00 0.00 3.51
5371 8297 0.461870 TGTCTCCGCAAATCCATCCG 60.462 55.000 0.00 0.00 0.00 4.18
5377 8303 1.330521 CCGCAAATCCATCCGTAGTTG 59.669 52.381 0.00 0.00 0.00 3.16
5384 8310 3.034721 TCCATCCGTAGTTGTGTCAAC 57.965 47.619 4.69 4.69 0.00 3.18
5421 8347 7.771183 TGTTTGTTTAGTGAAATCTTCTTGCT 58.229 30.769 0.00 0.00 0.00 3.91
5439 8365 8.438676 TTCTTGCTTAGATTATTGCCTACTTC 57.561 34.615 0.00 0.00 31.54 3.01
5481 8407 5.221204 TGCATAATCTTCTTTTGTGCACACA 60.221 36.000 21.56 11.11 43.39 3.72
5539 8465 1.002134 CCACCCTGTCGAGGCATTT 60.002 57.895 0.00 0.00 38.17 2.32
5621 8547 5.136828 TCAACCTCTTTTTCTATGGTGCAA 58.863 37.500 0.00 0.00 0.00 4.08
5687 8613 8.164070 ACTTCCTCCATTTTGTTATAACAGTCT 58.836 33.333 17.36 4.57 40.50 3.24
5689 8615 8.335532 TCCTCCATTTTGTTATAACAGTCTTG 57.664 34.615 17.36 13.30 40.50 3.02
5764 8695 2.638363 CCCTACCCTTATTGGCCTACTC 59.362 54.545 3.32 0.00 0.00 2.59
5785 8716 5.102953 TCTATTGCTTTGGTAGATGCTGT 57.897 39.130 0.00 0.00 0.00 4.40
5789 8720 1.470098 GCTTTGGTAGATGCTGTGTGG 59.530 52.381 0.00 0.00 0.00 4.17
5799 8730 5.571784 AGATGCTGTGTGGTTTAATGATG 57.428 39.130 0.00 0.00 0.00 3.07
5800 8731 3.574284 TGCTGTGTGGTTTAATGATGC 57.426 42.857 0.00 0.00 0.00 3.91
5801 8732 3.156293 TGCTGTGTGGTTTAATGATGCT 58.844 40.909 0.00 0.00 0.00 3.79
5822 8758 3.610040 TGAGTGGCATGTCTCGTAATT 57.390 42.857 0.00 0.00 33.88 1.40
5824 8760 3.262420 GAGTGGCATGTCTCGTAATTGT 58.738 45.455 0.00 0.00 0.00 2.71
5921 8857 7.751768 TGATAGATATGCGGATATACAGAGG 57.248 40.000 9.63 0.00 0.00 3.69
5946 8882 8.557029 GGGTATATGTGTAATCAACTTTAGCAC 58.443 37.037 0.00 0.00 0.00 4.40
6005 8944 4.873827 TCAATATAACGACAGTTCCTTGGC 59.126 41.667 0.00 0.00 41.49 4.52
6011 8950 1.813862 CGACAGTTCCTTGGCCTTGAA 60.814 52.381 3.32 0.66 0.00 2.69
6016 11322 2.893489 AGTTCCTTGGCCTTGAACATTC 59.107 45.455 24.60 7.25 40.58 2.67
6068 11374 7.215789 CCCATATGATGTCTCTATTATGGCTC 58.784 42.308 3.65 0.00 33.71 4.70
6101 11407 8.899427 TTAAAGCAACCAAATCATCATGAAAA 57.101 26.923 0.00 0.00 0.00 2.29
6178 11487 8.919018 AATTTACCCTCCCCAACATATTTTTA 57.081 30.769 0.00 0.00 0.00 1.52
6179 11488 8.919018 ATTTACCCTCCCCAACATATTTTTAA 57.081 30.769 0.00 0.00 0.00 1.52
6181 11490 6.867519 ACCCTCCCCAACATATTTTTAAAG 57.132 37.500 0.00 0.00 0.00 1.85
6208 11517 5.966742 ATCCAGAAACTTCTAAACTTGGC 57.033 39.130 0.00 0.00 35.34 4.52
6216 11525 5.613358 ACTTCTAAACTTGGCGAATGAAG 57.387 39.130 0.00 0.00 36.65 3.02
6260 11570 9.748708 CAACTGAAATTTTTCATCTGGTAAAGA 57.251 29.630 6.21 0.00 45.26 2.52
6342 11652 4.696877 CCATTGAAGTTACATCAGCTGACA 59.303 41.667 20.97 6.95 0.00 3.58
6473 11791 2.749621 CCTTCATGCTTTGTCACCTACC 59.250 50.000 0.00 0.00 0.00 3.18
6474 11792 3.411446 CTTCATGCTTTGTCACCTACCA 58.589 45.455 0.00 0.00 0.00 3.25
6475 11793 2.778299 TCATGCTTTGTCACCTACCAC 58.222 47.619 0.00 0.00 0.00 4.16
6476 11794 2.371841 TCATGCTTTGTCACCTACCACT 59.628 45.455 0.00 0.00 0.00 4.00
6477 11795 3.580895 TCATGCTTTGTCACCTACCACTA 59.419 43.478 0.00 0.00 0.00 2.74
6478 11796 3.396260 TGCTTTGTCACCTACCACTAC 57.604 47.619 0.00 0.00 0.00 2.73
6479 11797 2.038033 TGCTTTGTCACCTACCACTACC 59.962 50.000 0.00 0.00 0.00 3.18
6480 11798 2.929592 GCTTTGTCACCTACCACTACCG 60.930 54.545 0.00 0.00 0.00 4.02
6481 11799 1.259609 TTGTCACCTACCACTACCGG 58.740 55.000 0.00 0.00 0.00 5.28
6482 11800 0.405198 TGTCACCTACCACTACCGGA 59.595 55.000 9.46 0.00 0.00 5.14
6483 11801 1.203038 TGTCACCTACCACTACCGGAA 60.203 52.381 9.46 0.00 0.00 4.30
6484 11802 2.105766 GTCACCTACCACTACCGGAAT 58.894 52.381 9.46 0.00 0.00 3.01
6485 11803 2.100418 GTCACCTACCACTACCGGAATC 59.900 54.545 9.46 0.00 0.00 2.52
6486 11804 1.066605 CACCTACCACTACCGGAATCG 59.933 57.143 9.46 0.00 0.00 3.34
6487 11805 0.031721 CCTACCACTACCGGAATCGC 59.968 60.000 9.46 0.00 34.56 4.58
6488 11806 0.742505 CTACCACTACCGGAATCGCA 59.257 55.000 9.46 0.00 34.56 5.10
6489 11807 0.457035 TACCACTACCGGAATCGCAC 59.543 55.000 9.46 0.00 34.56 5.34
6490 11808 1.520787 CCACTACCGGAATCGCACC 60.521 63.158 9.46 0.00 34.56 5.01
6491 11809 1.520787 CACTACCGGAATCGCACCC 60.521 63.158 9.46 0.00 34.56 4.61
6492 11810 1.684734 ACTACCGGAATCGCACCCT 60.685 57.895 9.46 0.00 34.56 4.34
6493 11811 0.396139 ACTACCGGAATCGCACCCTA 60.396 55.000 9.46 0.00 34.56 3.53
6494 11812 0.966920 CTACCGGAATCGCACCCTAT 59.033 55.000 9.46 0.00 34.56 2.57
6495 11813 0.677288 TACCGGAATCGCACCCTATG 59.323 55.000 9.46 0.00 34.56 2.23
6540 11858 4.436998 CTGACTGGCCGTCGGGAC 62.437 72.222 21.72 0.00 45.87 4.46
6548 11866 2.838225 CCGTCGGGACAGGCCTAT 60.838 66.667 3.98 0.00 36.66 2.57
6549 11867 2.417516 CGTCGGGACAGGCCTATG 59.582 66.667 3.98 0.00 36.66 2.23
6550 11868 2.109181 GTCGGGACAGGCCTATGC 59.891 66.667 3.98 0.00 36.66 3.14
6560 11878 2.280457 GCCTATGCCGACAGCTCC 60.280 66.667 0.00 0.00 44.23 4.70
6561 11879 2.423446 CCTATGCCGACAGCTCCC 59.577 66.667 0.00 0.00 44.23 4.30
6562 11880 2.028190 CTATGCCGACAGCTCCCG 59.972 66.667 0.00 0.00 44.23 5.14
6563 11881 2.758327 TATGCCGACAGCTCCCGT 60.758 61.111 3.93 0.00 44.23 5.28
6564 11882 2.298158 CTATGCCGACAGCTCCCGTT 62.298 60.000 3.93 0.00 44.23 4.44
6565 11883 2.572095 TATGCCGACAGCTCCCGTTG 62.572 60.000 3.93 0.00 44.23 4.10
6568 11886 4.680237 CGACAGCTCCCGTTGGCA 62.680 66.667 0.00 0.00 28.47 4.92
6569 11887 2.045926 GACAGCTCCCGTTGGCAT 60.046 61.111 0.00 0.00 28.47 4.40
6570 11888 1.220749 GACAGCTCCCGTTGGCATA 59.779 57.895 0.00 0.00 28.47 3.14
6571 11889 0.811616 GACAGCTCCCGTTGGCATAG 60.812 60.000 0.00 0.00 28.47 2.23
6572 11890 1.524621 CAGCTCCCGTTGGCATAGG 60.525 63.158 0.00 0.00 0.00 2.57
6573 11891 2.203209 GCTCCCGTTGGCATAGGG 60.203 66.667 18.55 18.55 46.40 3.53
6574 11892 2.203209 CTCCCGTTGGCATAGGGC 60.203 66.667 19.50 0.00 44.70 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.516195 GAAGCGACCGAGGCCTCC 62.516 72.222 27.20 12.47 0.00 4.30
4 5 4.516195 GGAAGCGACCGAGGCCTC 62.516 72.222 23.79 23.79 0.00 4.70
14 15 4.812476 CGATGCACGGGGAAGCGA 62.812 66.667 0.00 0.00 38.46 4.93
25 26 1.888436 AAGGAGACGAAGCCGATGCA 61.888 55.000 0.00 0.00 41.13 3.96
141 144 1.076332 GCGCCGACAAACTATGAACT 58.924 50.000 0.00 0.00 0.00 3.01
205 208 1.649267 GATTCGAAGCGGGGATTGC 59.351 57.895 3.35 0.00 0.00 3.56
281 284 4.303603 CGCATTCCGCATCGCCAG 62.304 66.667 0.00 0.00 42.60 4.85
376 380 0.514691 CAAAAGCAGAGCGTCCAGAC 59.485 55.000 0.00 0.00 0.00 3.51
377 381 0.392706 TCAAAAGCAGAGCGTCCAGA 59.607 50.000 0.00 0.00 0.00 3.86
378 382 1.446907 ATCAAAAGCAGAGCGTCCAG 58.553 50.000 0.00 0.00 0.00 3.86
379 383 1.896220 AATCAAAAGCAGAGCGTCCA 58.104 45.000 0.00 0.00 0.00 4.02
380 384 4.318121 CGTATAATCAAAAGCAGAGCGTCC 60.318 45.833 0.00 0.00 0.00 4.79
381 385 4.752224 CGTATAATCAAAAGCAGAGCGTC 58.248 43.478 0.00 0.00 0.00 5.19
382 386 3.001330 GCGTATAATCAAAAGCAGAGCGT 59.999 43.478 0.00 0.00 0.00 5.07
383 387 3.535860 GCGTATAATCAAAAGCAGAGCG 58.464 45.455 0.00 0.00 0.00 5.03
412 416 8.961092 CACTAAAAATATCATCCAGAAATTGCG 58.039 33.333 0.00 0.00 0.00 4.85
417 421 7.335673 TCGTGCACTAAAAATATCATCCAGAAA 59.664 33.333 16.19 0.00 0.00 2.52
442 446 7.594714 TCTTATCACCGTTAGAGATGCTAATC 58.405 38.462 0.00 0.00 40.94 1.75
447 451 5.440234 TCTCTTATCACCGTTAGAGATGC 57.560 43.478 0.00 0.00 38.49 3.91
455 459 6.530534 CGTTTACTGAATCTCTTATCACCGTT 59.469 38.462 0.00 0.00 0.00 4.44
499 508 7.436933 TCGTTAGAGATCTAGTATACACCGAA 58.563 38.462 5.50 0.00 0.00 4.30
500 509 6.986250 TCGTTAGAGATCTAGTATACACCGA 58.014 40.000 5.50 0.00 0.00 4.69
501 510 7.544915 TCATCGTTAGAGATCTAGTATACACCG 59.455 40.741 5.50 0.00 0.00 4.94
502 511 8.774890 TCATCGTTAGAGATCTAGTATACACC 57.225 38.462 5.50 0.00 0.00 4.16
504 513 9.999660 AGTTCATCGTTAGAGATCTAGTATACA 57.000 33.333 5.50 0.00 0.00 2.29
506 515 9.438228 CCAGTTCATCGTTAGAGATCTAGTATA 57.562 37.037 0.00 0.00 0.00 1.47
507 516 8.158132 TCCAGTTCATCGTTAGAGATCTAGTAT 58.842 37.037 0.00 0.00 0.00 2.12
508 517 7.506971 TCCAGTTCATCGTTAGAGATCTAGTA 58.493 38.462 0.00 0.00 0.00 1.82
510 519 6.869315 TCCAGTTCATCGTTAGAGATCTAG 57.131 41.667 0.00 0.00 0.00 2.43
511 520 7.825331 AATCCAGTTCATCGTTAGAGATCTA 57.175 36.000 0.00 0.00 0.00 1.98
512 521 6.723298 AATCCAGTTCATCGTTAGAGATCT 57.277 37.500 0.00 0.00 0.00 2.75
513 522 6.292596 GCAAATCCAGTTCATCGTTAGAGATC 60.293 42.308 0.00 0.00 0.00 2.75
514 523 5.525378 GCAAATCCAGTTCATCGTTAGAGAT 59.475 40.000 0.00 0.00 0.00 2.75
515 524 4.870426 GCAAATCCAGTTCATCGTTAGAGA 59.130 41.667 0.00 0.00 0.00 3.10
516 525 4.259970 CGCAAATCCAGTTCATCGTTAGAG 60.260 45.833 0.00 0.00 0.00 2.43
517 526 3.616821 CGCAAATCCAGTTCATCGTTAGA 59.383 43.478 0.00 0.00 0.00 2.10
518 527 3.370978 ACGCAAATCCAGTTCATCGTTAG 59.629 43.478 0.00 0.00 0.00 2.34
519 528 3.124466 CACGCAAATCCAGTTCATCGTTA 59.876 43.478 0.00 0.00 0.00 3.18
520 529 2.095768 CACGCAAATCCAGTTCATCGTT 60.096 45.455 0.00 0.00 0.00 3.85
522 531 1.791555 GCACGCAAATCCAGTTCATCG 60.792 52.381 0.00 0.00 0.00 3.84
523 532 1.199789 TGCACGCAAATCCAGTTCATC 59.800 47.619 0.00 0.00 0.00 2.92
524 533 1.246649 TGCACGCAAATCCAGTTCAT 58.753 45.000 0.00 0.00 0.00 2.57
525 534 1.068402 CATGCACGCAAATCCAGTTCA 60.068 47.619 0.00 0.00 0.00 3.18
615 712 0.807496 GCCATCTGCACAGTTTCCTC 59.193 55.000 0.00 0.00 40.77 3.71
945 1721 1.067212 CGTACAGATAGTGGCACCTCC 59.933 57.143 15.27 3.23 0.00 4.30
952 1729 3.717400 AGCACATCGTACAGATAGTGG 57.283 47.619 18.91 6.73 37.52 4.00
957 1734 9.144747 GAAATCAATATAGCACATCGTACAGAT 57.855 33.333 0.00 0.00 41.01 2.90
964 1741 7.425577 TGGAAGAAATCAATATAGCACATCG 57.574 36.000 0.00 0.00 0.00 3.84
1356 2135 9.626045 GGTTTTCGAGAATGATGTTTTATCTTT 57.374 29.630 0.00 0.00 0.00 2.52
1497 2285 1.798813 GTTTCTTCAATCGGCAGTCGT 59.201 47.619 0.00 0.00 40.32 4.34
1519 2307 4.724074 TGAGAACATTGATTTCCATGCC 57.276 40.909 0.00 0.00 0.00 4.40
1520 2308 5.105635 TCCTTGAGAACATTGATTTCCATGC 60.106 40.000 0.00 0.00 0.00 4.06
2250 3050 6.937436 ACAAAGAACAGAGAACGGTAAAAT 57.063 33.333 0.00 0.00 0.00 1.82
2305 3105 2.489938 TGGATGTTAAGAGGTGCACC 57.510 50.000 29.22 29.22 0.00 5.01
2454 4208 5.473504 CACAAGCCAAAGGTAGTAGACAAAT 59.526 40.000 0.00 0.00 0.00 2.32
2514 4268 2.820059 TCACAACAGTACAGCTCCTG 57.180 50.000 0.00 3.60 37.52 3.86
2651 4451 3.099141 TGATGCAATCTTTTTCTCCCCC 58.901 45.455 0.00 0.00 45.81 5.40
2652 4452 4.648307 AGATGATGCAATCTTTTTCTCCCC 59.352 41.667 0.00 0.00 45.81 4.81
2653 4453 5.848833 AGATGATGCAATCTTTTTCTCCC 57.151 39.130 0.00 0.00 45.81 4.30
2654 4454 6.628185 ACAAGATGATGCAATCTTTTTCTCC 58.372 36.000 10.34 0.00 42.92 3.71
2655 4455 7.597743 ACAACAAGATGATGCAATCTTTTTCTC 59.402 33.333 10.34 0.00 42.92 2.87
2656 4456 7.384115 CACAACAAGATGATGCAATCTTTTTCT 59.616 33.333 10.34 0.00 42.92 2.52
2657 4457 7.359765 CCACAACAAGATGATGCAATCTTTTTC 60.360 37.037 10.34 0.00 42.92 2.29
2658 4458 6.425721 CCACAACAAGATGATGCAATCTTTTT 59.574 34.615 10.34 8.37 42.92 1.94
2659 4459 5.929992 CCACAACAAGATGATGCAATCTTTT 59.070 36.000 10.34 2.96 42.92 2.27
2660 4460 5.011329 ACCACAACAAGATGATGCAATCTTT 59.989 36.000 10.34 1.86 42.92 2.52
2661 4461 4.525487 ACCACAACAAGATGATGCAATCTT 59.475 37.500 7.67 7.67 45.81 2.40
2662 4462 4.084287 ACCACAACAAGATGATGCAATCT 58.916 39.130 0.00 0.00 45.81 2.40
2663 4463 4.445452 ACCACAACAAGATGATGCAATC 57.555 40.909 0.00 0.00 45.83 2.67
2664 4464 4.562082 CAACCACAACAAGATGATGCAAT 58.438 39.130 0.00 0.00 0.00 3.56
2665 4465 3.799574 GCAACCACAACAAGATGATGCAA 60.800 43.478 0.00 0.00 0.00 4.08
2666 4466 2.288334 GCAACCACAACAAGATGATGCA 60.288 45.455 0.00 0.00 0.00 3.96
2667 4467 2.331194 GCAACCACAACAAGATGATGC 58.669 47.619 0.00 0.00 0.00 3.91
2668 4468 2.950433 GGCAACCACAACAAGATGATG 58.050 47.619 0.00 0.00 0.00 3.07
2684 4484 7.296628 ACTGAAAACAATATTAACAGGGCAA 57.703 32.000 0.00 0.00 0.00 4.52
2894 4955 1.909700 TTTGGCACTGAAGGCTTAGG 58.090 50.000 0.00 0.00 34.73 2.69
3180 5256 5.364157 TCTCCTATTCTAGCAAGGGAAAGAC 59.636 44.000 5.37 0.00 0.00 3.01
3187 5263 5.798125 TGTCATCTCCTATTCTAGCAAGG 57.202 43.478 0.00 0.00 0.00 3.61
3250 5326 4.389772 GCGCATGCACAAGGAATC 57.610 55.556 19.57 0.00 42.15 2.52
3535 5611 4.925646 GGGTACAAACGACTTACTTGTAGG 59.074 45.833 0.00 0.00 36.48 3.18
3582 5662 8.538409 AATAAAAGCTTTATCTTTGGTGCAAG 57.462 30.769 13.10 0.00 36.49 4.01
3864 5970 5.837829 ACTCCCTCCTTGCCAAATTATAAA 58.162 37.500 0.00 0.00 0.00 1.40
3967 6076 8.604035 ACCGCTTTAATTATATGCATTAGATCG 58.396 33.333 3.54 0.00 0.00 3.69
3996 6105 5.297776 GGTGCTGACTAATCATGCATACTTT 59.702 40.000 0.00 0.00 39.52 2.66
4037 6192 8.977267 AATCAAAGGAAAGATAGAAGGATCTG 57.023 34.615 0.00 0.00 36.28 2.90
4100 6255 7.376866 CAGTCATCATTGCCGTATTAATTGAAC 59.623 37.037 0.00 0.00 0.00 3.18
4120 6302 7.417116 GCAAAATTGGATCCTACATTCAGTCAT 60.417 37.037 14.23 0.00 0.00 3.06
4315 6539 1.476085 CTCACAAATAAATGCGCCCCA 59.524 47.619 4.18 0.00 0.00 4.96
4639 7397 6.935208 AGTACATAGAACCAAGGTTGAACTTC 59.065 38.462 9.61 0.00 38.60 3.01
4900 7808 9.696917 GAATAAAACATTCCAAGTCAATCAGTT 57.303 29.630 0.00 0.00 0.00 3.16
4939 7847 2.925578 TACCATGACGTACCAAGTCG 57.074 50.000 0.00 0.00 41.24 4.18
5103 8013 7.116819 CGGCTGAACAAAACAAAAGAATAAAC 58.883 34.615 0.00 0.00 0.00 2.01
5119 8029 1.357334 GAAAAACGCCGGCTGAACA 59.643 52.632 26.68 0.00 0.00 3.18
5172 8082 5.247564 GCATGAAGTATACCACCTACCCATA 59.752 44.000 0.00 0.00 0.00 2.74
5266 8184 5.826643 AGAAACAGTTTGGCCCATATCTTA 58.173 37.500 2.34 0.00 0.00 2.10
5358 8284 2.006888 ACAACTACGGATGGATTTGCG 58.993 47.619 0.00 0.00 36.43 4.85
5370 8296 2.287788 ACGGTAGGTTGACACAACTACG 60.288 50.000 13.05 13.40 37.32 3.51
5371 8297 3.375782 ACGGTAGGTTGACACAACTAC 57.624 47.619 13.05 12.25 36.07 2.73
5377 8303 2.140717 CAAGGAACGGTAGGTTGACAC 58.859 52.381 0.00 0.00 39.50 3.67
5384 8310 4.818005 ACTAAACAAACAAGGAACGGTAGG 59.182 41.667 0.00 0.00 0.00 3.18
5481 8407 3.454858 AGTCCATAGTCCTGTGGTCAAT 58.545 45.455 9.55 0.00 41.84 2.57
5539 8465 6.767524 AACTCACTTCCACAACAACATTTA 57.232 33.333 0.00 0.00 0.00 1.40
5764 8695 4.637534 ACACAGCATCTACCAAAGCAATAG 59.362 41.667 0.00 0.00 0.00 1.73
5785 8716 4.218200 CCACTCAAGCATCATTAAACCACA 59.782 41.667 0.00 0.00 0.00 4.17
5789 8720 4.439305 TGCCACTCAAGCATCATTAAAC 57.561 40.909 0.00 0.00 34.69 2.01
5799 8730 0.671781 ACGAGACATGCCACTCAAGC 60.672 55.000 13.05 0.00 33.86 4.01
5800 8731 2.654749 TACGAGACATGCCACTCAAG 57.345 50.000 13.05 3.59 33.86 3.02
5801 8732 3.610040 ATTACGAGACATGCCACTCAA 57.390 42.857 13.05 4.23 33.86 3.02
5870 8806 3.875727 CCACCATGTGCATTTGACAAAAA 59.124 39.130 4.41 0.00 31.34 1.94
5874 8810 0.317799 GCCACCATGTGCATTTGACA 59.682 50.000 0.00 0.00 31.34 3.58
5875 8811 0.604578 AGCCACCATGTGCATTTGAC 59.395 50.000 0.00 0.00 31.34 3.18
5876 8812 2.212812 TAGCCACCATGTGCATTTGA 57.787 45.000 0.00 0.00 31.34 2.69
5877 8813 3.119065 TCATTAGCCACCATGTGCATTTG 60.119 43.478 0.00 0.00 31.34 2.32
5878 8814 3.098377 TCATTAGCCACCATGTGCATTT 58.902 40.909 0.00 0.00 31.34 2.32
5879 8815 2.737544 TCATTAGCCACCATGTGCATT 58.262 42.857 0.00 0.00 31.34 3.56
5890 8826 5.876651 ATCCGCATATCTATCATTAGCCA 57.123 39.130 0.00 0.00 0.00 4.75
5921 8857 9.104965 TGTGCTAAAGTTGATTACACATATACC 57.895 33.333 0.00 0.00 32.06 2.73
5946 8882 2.149578 GCAGAGGGCATATGCTAGTTG 58.850 52.381 26.12 19.14 43.01 3.16
6068 11374 8.776376 ATGATTTGGTTGCTTTAAATTGGTAG 57.224 30.769 0.00 0.00 0.00 3.18
6101 11407 9.821240 ATCACCTCTATGTCTATCTACTGAATT 57.179 33.333 0.00 0.00 0.00 2.17
6153 11459 7.822749 AAAAATATGTTGGGGAGGGTAAATT 57.177 32.000 0.00 0.00 0.00 1.82
6155 11461 8.737601 TTTAAAAATATGTTGGGGAGGGTAAA 57.262 30.769 0.00 0.00 0.00 2.01
6158 11464 6.327781 ACTTTAAAAATATGTTGGGGAGGGT 58.672 36.000 0.00 0.00 0.00 4.34
6159 11465 6.867519 ACTTTAAAAATATGTTGGGGAGGG 57.132 37.500 0.00 0.00 0.00 4.30
6186 11495 4.455877 CGCCAAGTTTAGAAGTTTCTGGAT 59.544 41.667 4.67 0.00 38.19 3.41
6208 11517 6.925610 TTACCAGATGGAATTCTTCATTCG 57.074 37.500 5.72 0.00 42.27 3.34
6216 11525 5.415701 TCAGTTGCTTTACCAGATGGAATTC 59.584 40.000 5.72 0.00 38.94 2.17
6302 11612 1.226295 GGTAAATCGCGCCACTTGC 60.226 57.895 0.00 0.00 0.00 4.01
6342 11652 2.383338 AGATCCCTCCCCAACATTTGTT 59.617 45.455 0.00 0.00 39.12 2.83
6374 11692 4.954202 CCAGTACTCATAGTTACACCAGGA 59.046 45.833 0.00 0.00 0.00 3.86
6452 11770 2.749621 GGTAGGTGACAAAGCATGAAGG 59.250 50.000 0.00 0.00 0.00 3.46
6473 11791 1.520787 GGGTGCGATTCCGGTAGTG 60.521 63.158 0.00 0.00 36.06 2.74
6474 11792 0.396139 TAGGGTGCGATTCCGGTAGT 60.396 55.000 0.00 0.00 36.06 2.73
6475 11793 0.966920 ATAGGGTGCGATTCCGGTAG 59.033 55.000 0.00 0.00 36.06 3.18
6476 11794 0.677288 CATAGGGTGCGATTCCGGTA 59.323 55.000 0.00 0.00 36.06 4.02
6477 11795 1.445942 CATAGGGTGCGATTCCGGT 59.554 57.895 0.00 0.00 36.06 5.28
6478 11796 1.961277 GCATAGGGTGCGATTCCGG 60.961 63.158 0.00 0.00 45.23 5.14
6479 11797 3.642755 GCATAGGGTGCGATTCCG 58.357 61.111 0.00 0.00 45.23 4.30
6525 11843 4.436998 CTGTCCCGACGGCCAGTC 62.437 72.222 18.57 15.15 46.16 3.51
6531 11849 2.838225 ATAGGCCTGTCCCGACGG 60.838 66.667 17.99 6.99 37.44 4.79
6532 11850 2.417516 CATAGGCCTGTCCCGACG 59.582 66.667 17.99 0.00 34.51 5.12
6533 11851 2.109181 GCATAGGCCTGTCCCGAC 59.891 66.667 17.99 0.00 34.51 4.79
6543 11861 2.280457 GGAGCTGTCGGCATAGGC 60.280 66.667 6.39 0.00 44.79 3.93
6544 11862 2.423446 GGGAGCTGTCGGCATAGG 59.577 66.667 6.39 0.00 44.79 2.57
6545 11863 2.028190 CGGGAGCTGTCGGCATAG 59.972 66.667 6.39 0.00 44.79 2.23
6546 11864 2.355986 AACGGGAGCTGTCGGCATA 61.356 57.895 6.39 0.00 44.79 3.14
6547 11865 3.706373 AACGGGAGCTGTCGGCAT 61.706 61.111 6.39 0.00 44.79 4.40
6548 11866 4.680237 CAACGGGAGCTGTCGGCA 62.680 66.667 6.39 0.00 44.79 5.69
6551 11869 2.572095 TATGCCAACGGGAGCTGTCG 62.572 60.000 0.00 0.00 35.59 4.35
6552 11870 0.811616 CTATGCCAACGGGAGCTGTC 60.812 60.000 0.00 0.00 35.59 3.51
6553 11871 1.221840 CTATGCCAACGGGAGCTGT 59.778 57.895 0.00 0.00 35.59 4.40
6554 11872 1.524621 CCTATGCCAACGGGAGCTG 60.525 63.158 0.00 0.00 35.59 4.24
6555 11873 2.746375 CCCTATGCCAACGGGAGCT 61.746 63.158 0.00 0.00 40.55 4.09
6556 11874 2.203209 CCCTATGCCAACGGGAGC 60.203 66.667 0.00 0.00 40.55 4.70
6557 11875 2.203209 GCCCTATGCCAACGGGAG 60.203 66.667 5.90 0.00 40.55 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.