Multiple sequence alignment - TraesCS2D01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G477900 chr2D 100.000 3860 0 0 1 3860 579534462 579538321 0.000000e+00 7129.0
1 TraesCS2D01G477900 chr2D 93.777 466 22 5 3362 3824 579546204 579546665 0.000000e+00 693.0
2 TraesCS2D01G477900 chr2D 100.000 40 0 0 3819 3858 579546703 579546742 1.490000e-09 75.0
3 TraesCS2D01G477900 chr2B 90.552 1450 93 21 1401 2813 697511117 697512559 0.000000e+00 1879.0
4 TraesCS2D01G477900 chr2B 83.382 686 83 23 616 1293 697509854 697510516 1.190000e-169 606.0
5 TraesCS2D01G477900 chr2B 89.532 449 33 7 1 444 697509226 697509665 1.210000e-154 556.0
6 TraesCS2D01G477900 chr2B 86.024 508 66 2 2875 3380 111083484 111082980 1.220000e-149 540.0
7 TraesCS2D01G477900 chr2A 89.169 1505 113 21 1334 2814 717188375 717189853 0.000000e+00 1831.0
8 TraesCS2D01G477900 chr2A 93.200 500 28 4 835 1333 717187768 717188262 0.000000e+00 730.0
9 TraesCS2D01G477900 chr2A 89.666 329 24 7 485 811 717187350 717187670 9.980000e-111 411.0
10 TraesCS2D01G477900 chr2A 82.600 500 44 17 1 466 717186810 717187300 6.010000e-108 401.0
11 TraesCS2D01G477900 chr2A 89.474 285 26 4 3365 3648 377837598 377837317 1.320000e-94 357.0
12 TraesCS2D01G477900 chr6A 83.953 430 52 14 3374 3793 569916476 569916898 2.790000e-106 396.0
13 TraesCS2D01G477900 chr6A 88.050 318 29 7 3494 3807 569908662 569908974 6.090000e-98 368.0
14 TraesCS2D01G477900 chr6A 87.419 310 36 3 3374 3682 481829642 481829949 1.710000e-93 353.0
15 TraesCS2D01G477900 chr4D 84.500 400 54 8 3373 3771 351417732 351418124 4.680000e-104 388.0
16 TraesCS2D01G477900 chr4D 86.774 310 35 6 3374 3681 279255101 279254796 1.330000e-89 340.0
17 TraesCS2D01G477900 chr4D 86.792 159 15 5 3651 3807 351449829 351449983 5.130000e-39 172.0
18 TraesCS2D01G477900 chr6D 88.372 301 28 7 3373 3671 308507234 308507529 4.740000e-94 355.0
19 TraesCS2D01G477900 chr1D 89.399 283 26 4 3374 3655 447116478 447116199 1.710000e-93 353.0
20 TraesCS2D01G477900 chr5D 96.386 83 2 1 798 880 294637677 294637758 6.730000e-28 135.0
21 TraesCS2D01G477900 chr5D 72.954 281 62 11 2875 3149 481266234 481265962 6.870000e-13 86.1
22 TraesCS2D01G477900 chr7D 94.048 84 4 1 795 878 165657863 165657945 4.050000e-25 126.0
23 TraesCS2D01G477900 chr7D 89.362 94 6 2 787 879 465336126 465336036 8.760000e-22 115.0
24 TraesCS2D01G477900 chr1A 94.048 84 4 1 798 881 27362022 27361940 4.050000e-25 126.0
25 TraesCS2D01G477900 chr5A 93.976 83 4 1 798 880 387927467 387927548 1.460000e-24 124.0
26 TraesCS2D01G477900 chr6B 92.045 88 4 3 798 885 139885295 139885211 1.880000e-23 121.0
27 TraesCS2D01G477900 chr7B 89.362 94 5 3 787 879 489867053 489866964 3.150000e-21 113.0
28 TraesCS2D01G477900 chr4B 79.866 149 13 12 3632 3770 279810617 279810476 4.110000e-15 93.5
29 TraesCS2D01G477900 chr3B 79.730 148 13 12 3632 3770 611781455 611781316 1.480000e-14 91.6
30 TraesCS2D01G477900 chr1B 79.195 149 14 12 3632 3770 326960582 326960441 1.910000e-13 87.9
31 TraesCS2D01G477900 chr4A 78.205 156 16 12 3626 3770 550202281 550202429 2.470000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G477900 chr2D 579534462 579538321 3859 False 7129.000000 7129 100.00000 1 3860 1 chr2D.!!$F1 3859
1 TraesCS2D01G477900 chr2D 579546204 579546742 538 False 384.000000 693 96.88850 3362 3858 2 chr2D.!!$F2 496
2 TraesCS2D01G477900 chr2B 697509226 697512559 3333 False 1013.666667 1879 87.82200 1 2813 3 chr2B.!!$F1 2812
3 TraesCS2D01G477900 chr2B 111082980 111083484 504 True 540.000000 540 86.02400 2875 3380 1 chr2B.!!$R1 505
4 TraesCS2D01G477900 chr2A 717186810 717189853 3043 False 843.250000 1831 88.65875 1 2814 4 chr2A.!!$F1 2813

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 399 0.033504 ACGTACTCCTGTGCCACTTG 59.966 55.0 0.00 0.00 0.00 3.16 F
1913 2630 0.744874 CCTGCCAATGCTGATTCAGG 59.255 55.0 15.28 0.33 38.61 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 2916 0.037697 CGAACCCGATGTGGAACTCA 60.038 55.0 0.0 0.0 42.00 3.41 R
3117 3871 0.800683 CGCGATTGTCTTAGACGGCA 60.801 55.0 0.0 0.0 34.95 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 2.392613 CTTCGCCGCTGTTGCTTGTT 62.393 55.000 0.00 0.00 36.97 2.83
264 279 1.819288 TCTAGAAGGAGTTCGTGCCAG 59.181 52.381 0.00 0.00 37.79 4.85
265 280 0.895530 TAGAAGGAGTTCGTGCCAGG 59.104 55.000 0.00 0.00 37.79 4.45
281 297 4.035675 GTGCCAGGAATTATTTCTTCTCCG 59.964 45.833 0.00 0.00 32.16 4.63
287 303 5.819901 AGGAATTATTTCTTCTCCGCAGAAG 59.180 40.000 9.99 9.99 45.32 2.85
335 368 5.180117 CCTGAAATATGAGCCGGAATACTTG 59.820 44.000 5.05 0.00 0.00 3.16
361 394 5.505173 TTATTACTACGTACTCCTGTGCC 57.495 43.478 0.00 0.00 0.00 5.01
362 395 2.495155 TACTACGTACTCCTGTGCCA 57.505 50.000 0.00 0.00 0.00 4.92
363 396 0.886563 ACTACGTACTCCTGTGCCAC 59.113 55.000 0.00 0.00 0.00 5.01
364 397 1.174783 CTACGTACTCCTGTGCCACT 58.825 55.000 0.00 0.00 0.00 4.00
365 398 1.544691 CTACGTACTCCTGTGCCACTT 59.455 52.381 0.00 0.00 0.00 3.16
366 399 0.033504 ACGTACTCCTGTGCCACTTG 59.966 55.000 0.00 0.00 0.00 3.16
375 408 4.960938 TCCTGTGCCACTTGATATATCAC 58.039 43.478 15.10 4.30 36.36 3.06
455 488 5.814712 GCTGTGGGGATAGGAATAGGATAGA 60.815 48.000 0.00 0.00 0.00 1.98
466 499 6.553857 AGGAATAGGATAGACGGTCAATACT 58.446 40.000 11.27 5.88 0.00 2.12
467 500 7.696981 AGGAATAGGATAGACGGTCAATACTA 58.303 38.462 11.27 7.81 0.00 1.82
468 501 7.611079 AGGAATAGGATAGACGGTCAATACTAC 59.389 40.741 11.27 0.00 0.00 2.73
537 623 3.474570 AGATCGCTGGGCTGGTCC 61.475 66.667 0.00 0.00 0.00 4.46
652 739 2.021457 TGACTCCGCATCGATGTCTAA 58.979 47.619 25.47 9.07 33.18 2.10
687 774 3.402691 CTCGTCGATGCAGCTCGGT 62.403 63.158 9.67 0.00 39.13 4.69
691 778 3.250323 CGATGCAGCTCGGTCACG 61.250 66.667 0.00 0.00 42.74 4.35
799 886 3.975479 ACTATAGTACACCCTCTGCCT 57.025 47.619 2.75 0.00 0.00 4.75
801 888 4.621769 ACTATAGTACACCCTCTGCCTTT 58.378 43.478 2.75 0.00 0.00 3.11
802 889 3.914426 ATAGTACACCCTCTGCCTTTG 57.086 47.619 0.00 0.00 0.00 2.77
842 1041 5.292345 ACGTTTTGGCAGTTTAATTTGAACC 59.708 36.000 0.82 0.00 0.00 3.62
873 1072 9.886132 AAACGTCTTATATTAATGAACAGAGGT 57.114 29.630 0.00 3.81 31.12 3.85
981 1180 1.433121 TTTTCAAAAGGCAGGCCCAT 58.567 45.000 6.70 0.00 36.58 4.00
1167 1369 1.156645 GCTGCTACATCGCTCCCAAG 61.157 60.000 0.00 0.00 0.00 3.61
1170 1372 1.486310 TGCTACATCGCTCCCAAGATT 59.514 47.619 0.00 0.00 0.00 2.40
1199 1401 1.871039 GCCTGTCTTGTTGAAACGCTA 59.129 47.619 0.00 0.00 0.00 4.26
1284 1486 1.543358 TGGATACTGCAAAAATGCGCA 59.457 42.857 14.96 14.96 37.69 6.09
1285 1487 2.029560 TGGATACTGCAAAAATGCGCAA 60.030 40.909 17.11 0.00 37.76 4.85
1293 1495 1.994779 CAAAAATGCGCAATCTCCCAC 59.005 47.619 17.11 0.00 0.00 4.61
1317 1524 6.174720 TCCCAGGTTAGTAGCTCAATATTG 57.825 41.667 9.29 9.29 0.00 1.90
1329 1536 5.573337 GCTCAATATTGACCAAGAGCTTT 57.427 39.130 14.23 0.00 43.68 3.51
1361 1709 6.035975 CACACATTTGTTTCCTTTCCTTCAAC 59.964 38.462 0.00 0.00 31.66 3.18
1373 1721 6.262273 TCCTTTCCTTCAACTGAACATTACAC 59.738 38.462 0.00 0.00 0.00 2.90
1384 1735 8.785101 CAACTGAACATTACACGTATATTTTGC 58.215 33.333 0.00 0.00 0.00 3.68
1386 1737 8.388103 ACTGAACATTACACGTATATTTTGCTC 58.612 33.333 0.00 0.00 0.00 4.26
1390 1741 7.861630 ACATTACACGTATATTTTGCTCATCC 58.138 34.615 0.00 0.00 0.00 3.51
1396 1747 4.821805 CGTATATTTTGCTCATCCCACCTT 59.178 41.667 0.00 0.00 0.00 3.50
1403 1754 3.114606 TGCTCATCCCACCTTAATCAGA 58.885 45.455 0.00 0.00 0.00 3.27
1404 1755 3.718434 TGCTCATCCCACCTTAATCAGAT 59.282 43.478 0.00 0.00 0.00 2.90
1409 1760 6.359804 TCATCCCACCTTAATCAGATTTCTG 58.640 40.000 0.00 0.97 45.08 3.02
1468 2185 0.821301 TGTTGCGATCCTGTTGGCAA 60.821 50.000 0.00 0.00 42.54 4.52
1478 2195 2.846206 TCCTGTTGGCAATGTAGATCCT 59.154 45.455 1.92 0.00 0.00 3.24
1490 2207 5.904362 ATGTAGATCCTTGCCTTTGTTTC 57.096 39.130 0.00 0.00 0.00 2.78
1589 2306 1.468054 GCGGCATTGAAGCTAACCTTG 60.468 52.381 0.00 0.00 32.78 3.61
1607 2324 3.554960 CCTTGAGGGCGATTCGATCATTA 60.555 47.826 10.88 0.00 0.00 1.90
1642 2359 1.364626 GCAATCAGCAGTCCGTCCTG 61.365 60.000 0.00 0.00 44.79 3.86
1719 2436 0.894835 AGCACCGCCATTTTTAAGGG 59.105 50.000 0.00 0.00 34.88 3.95
1726 2443 2.428890 CGCCATTTTTAAGGGGCATACA 59.571 45.455 0.00 0.00 46.75 2.29
1765 2482 1.500474 TCAAGGGGAGGAGCATACAG 58.500 55.000 0.00 0.00 0.00 2.74
1778 2495 7.177568 GGAGGAGCATACAGAAGAACTATGATA 59.822 40.741 0.00 0.00 0.00 2.15
1795 2512 4.558226 TGATATCAGTGCACTTTGGAGT 57.442 40.909 18.94 4.91 36.25 3.85
1801 2518 3.067106 CAGTGCACTTTGGAGTATCGTT 58.933 45.455 18.94 0.00 33.90 3.85
1913 2630 0.744874 CCTGCCAATGCTGATTCAGG 59.255 55.000 15.28 0.33 38.61 3.86
2009 2726 1.533731 GATCCGCCTTCACGACAAAAA 59.466 47.619 0.00 0.00 34.06 1.94
2112 2839 5.185454 TCTTATGCTGGTCCAGTTAACATG 58.815 41.667 20.24 7.61 33.43 3.21
2118 2845 2.304761 TGGTCCAGTTAACATGTCTCCC 59.695 50.000 8.61 0.00 0.00 4.30
2126 2853 4.892934 AGTTAACATGTCTCCCTTGCAAAA 59.107 37.500 8.61 0.00 0.00 2.44
2153 2884 6.316140 GCTGACATGAACCATTACTGTCATTA 59.684 38.462 0.00 0.00 43.60 1.90
2157 2888 9.722056 GACATGAACCATTACTGTCATTATTTC 57.278 33.333 0.00 0.00 36.94 2.17
2203 2934 1.804748 GTTGAGTTCCACATCGGGTTC 59.195 52.381 0.00 0.00 34.36 3.62
2335 3066 1.376037 CAAGAAGGTCCACTCGGCC 60.376 63.158 0.00 0.00 0.00 6.13
2379 3110 0.394352 AATTTGGCCCTCTGCTACGG 60.394 55.000 0.00 0.00 40.92 4.02
2472 3203 6.320164 TGGATTTGGTCGTGATTAAATTAGGG 59.680 38.462 0.00 0.00 0.00 3.53
2658 3395 7.332182 TCTGTAGTAGATCGCACTGTCTATATG 59.668 40.741 11.89 0.00 30.35 1.78
2663 3405 6.003234 AGATCGCACTGTCTATATGTGTAC 57.997 41.667 0.00 0.00 34.52 2.90
2716 3458 3.334691 TCTTCGATGTGGCGATTTTCTT 58.665 40.909 0.00 0.00 40.35 2.52
2731 3473 6.088824 CGATTTTCTTTTCTCCTGTTGGATG 58.911 40.000 0.00 0.00 42.29 3.51
2757 3499 7.410485 GCTATTTTGCTAGCTAGTTTTCGATT 58.590 34.615 21.62 3.32 40.79 3.34
2760 3502 6.795098 TTTGCTAGCTAGTTTTCGATTGAA 57.205 33.333 21.62 0.00 0.00 2.69
2814 3566 6.048732 ACCATTTCCAAATTGTTATGACCC 57.951 37.500 0.00 0.00 0.00 4.46
2815 3567 5.045942 ACCATTTCCAAATTGTTATGACCCC 60.046 40.000 0.00 0.00 0.00 4.95
2816 3568 5.046014 CCATTTCCAAATTGTTATGACCCCA 60.046 40.000 0.00 0.00 0.00 4.96
2817 3569 6.352910 CCATTTCCAAATTGTTATGACCCCAT 60.353 38.462 0.00 0.00 36.81 4.00
2818 3570 5.930837 TTCCAAATTGTTATGACCCCATC 57.069 39.130 0.00 0.00 34.31 3.51
2819 3571 5.205517 TCCAAATTGTTATGACCCCATCT 57.794 39.130 0.00 0.00 34.31 2.90
2820 3572 5.588845 TCCAAATTGTTATGACCCCATCTT 58.411 37.500 0.00 0.00 34.31 2.40
2821 3573 6.022315 TCCAAATTGTTATGACCCCATCTTT 58.978 36.000 0.00 0.00 34.31 2.52
2822 3574 6.500049 TCCAAATTGTTATGACCCCATCTTTT 59.500 34.615 0.00 0.00 34.31 2.27
2823 3575 7.017056 TCCAAATTGTTATGACCCCATCTTTTT 59.983 33.333 0.00 0.00 34.31 1.94
2846 3598 5.743026 TTTTTCTTGAATACGCACACTCA 57.257 34.783 0.00 0.00 0.00 3.41
2847 3599 5.940192 TTTTCTTGAATACGCACACTCAT 57.060 34.783 0.00 0.00 0.00 2.90
2848 3600 4.926860 TTCTTGAATACGCACACTCATG 57.073 40.909 0.00 0.00 0.00 3.07
2849 3601 2.672874 TCTTGAATACGCACACTCATGC 59.327 45.455 0.00 0.00 42.48 4.06
2858 3610 2.540515 GCACACTCATGCGTACTATGT 58.459 47.619 6.80 0.00 35.50 2.29
2859 3611 3.702330 GCACACTCATGCGTACTATGTA 58.298 45.455 6.80 0.00 35.50 2.29
2860 3612 4.299155 GCACACTCATGCGTACTATGTAT 58.701 43.478 6.80 0.00 35.50 2.29
2861 3613 4.745125 GCACACTCATGCGTACTATGTATT 59.255 41.667 6.80 0.00 35.50 1.89
2862 3614 5.918576 GCACACTCATGCGTACTATGTATTA 59.081 40.000 6.80 0.00 35.50 0.98
2863 3615 6.419710 GCACACTCATGCGTACTATGTATTAA 59.580 38.462 6.80 0.00 35.50 1.40
2864 3616 7.042992 GCACACTCATGCGTACTATGTATTAAA 60.043 37.037 6.80 0.00 35.50 1.52
2865 3617 8.480066 CACACTCATGCGTACTATGTATTAAAG 58.520 37.037 6.80 0.65 0.00 1.85
2866 3618 8.410912 ACACTCATGCGTACTATGTATTAAAGA 58.589 33.333 6.80 0.00 0.00 2.52
2867 3619 9.244799 CACTCATGCGTACTATGTATTAAAGAA 57.755 33.333 6.80 0.00 0.00 2.52
2868 3620 9.464714 ACTCATGCGTACTATGTATTAAAGAAG 57.535 33.333 6.80 0.00 0.00 2.85
2869 3621 9.678941 CTCATGCGTACTATGTATTAAAGAAGA 57.321 33.333 6.80 0.00 0.00 2.87
2873 3625 9.459640 TGCGTACTATGTATTAAAGAAGATGAC 57.540 33.333 0.00 0.00 0.00 3.06
2899 3651 9.627395 CTACTATGTATTAAAGAAGATGACGGG 57.373 37.037 0.00 0.00 0.00 5.28
2903 3655 6.346096 TGTATTAAAGAAGATGACGGGGAAG 58.654 40.000 0.00 0.00 0.00 3.46
2904 3656 2.789409 AAAGAAGATGACGGGGAAGG 57.211 50.000 0.00 0.00 0.00 3.46
2907 3659 2.482494 AGAAGATGACGGGGAAGGAAT 58.518 47.619 0.00 0.00 0.00 3.01
2944 3696 6.753279 GGCGAGTACATGTTACAAGTTACATA 59.247 38.462 2.30 0.00 31.90 2.29
2968 3720 1.491754 ACCAACTCCACCGGTAAAACT 59.508 47.619 6.87 0.00 0.00 2.66
2988 3740 6.532988 AACTGGAAAACTACTCTAGCCTAG 57.467 41.667 0.00 0.00 0.00 3.02
2989 3741 5.581975 ACTGGAAAACTACTCTAGCCTAGT 58.418 41.667 0.00 0.00 0.00 2.57
2991 3743 6.153170 ACTGGAAAACTACTCTAGCCTAGTTC 59.847 42.308 10.61 0.00 33.01 3.01
2997 3749 1.064611 ACTCTAGCCTAGTTCCTCGCA 60.065 52.381 0.00 0.00 0.00 5.10
3003 3755 1.017387 CCTAGTTCCTCGCATTTGCC 58.983 55.000 0.00 0.00 37.91 4.52
3020 3772 2.592308 CCACCTTGCTAGCCCTCC 59.408 66.667 13.29 0.00 0.00 4.30
3021 3773 2.187946 CACCTTGCTAGCCCTCCG 59.812 66.667 13.29 0.00 0.00 4.63
3042 3794 1.698506 AGAGAGGCTCTACATTCCCG 58.301 55.000 18.75 0.00 39.28 5.14
3045 3797 1.757699 AGAGGCTCTACATTCCCGTTC 59.242 52.381 17.09 0.00 0.00 3.95
3052 3804 4.636206 GCTCTACATTCCCGTTCAAGATTT 59.364 41.667 0.00 0.00 0.00 2.17
3053 3805 5.123979 GCTCTACATTCCCGTTCAAGATTTT 59.876 40.000 0.00 0.00 0.00 1.82
3054 3806 6.494893 TCTACATTCCCGTTCAAGATTTTG 57.505 37.500 0.00 0.00 35.57 2.44
3060 3812 2.035832 CCCGTTCAAGATTTTGGCTTGT 59.964 45.455 0.00 0.00 42.49 3.16
3062 3814 4.119136 CCGTTCAAGATTTTGGCTTGTTT 58.881 39.130 0.00 0.00 42.49 2.83
3068 3820 3.667360 AGATTTTGGCTTGTTTCCATGC 58.333 40.909 0.00 0.00 40.15 4.06
3071 3823 2.504681 GGCTTGTTTCCATGCGCG 60.505 61.111 0.00 0.00 41.40 6.86
3091 3845 1.203994 GTCCCTCGTCTTCAATTCCGA 59.796 52.381 0.00 0.00 0.00 4.55
3098 3852 2.066262 GTCTTCAATTCCGAACGAGCA 58.934 47.619 0.00 0.00 0.00 4.26
3127 3881 1.226717 GAGAGGCGTGCCGTCTAAG 60.227 63.158 5.02 0.00 43.67 2.18
3132 3886 0.739813 GGCGTGCCGTCTAAGACAAT 60.740 55.000 0.00 0.00 32.09 2.71
3148 3902 0.452122 CAATCGCGTTCCGGTGTTTC 60.452 55.000 5.77 0.00 37.59 2.78
3158 3912 0.324943 CCGGTGTTTCCACATCTCCT 59.675 55.000 0.00 0.00 43.71 3.69
3159 3913 1.676014 CCGGTGTTTCCACATCTCCTC 60.676 57.143 0.00 0.00 43.71 3.71
3161 3915 1.340114 GGTGTTTCCACATCTCCTCCC 60.340 57.143 0.00 0.00 43.71 4.30
3162 3916 1.351017 GTGTTTCCACATCTCCTCCCA 59.649 52.381 0.00 0.00 41.44 4.37
3163 3917 1.351017 TGTTTCCACATCTCCTCCCAC 59.649 52.381 0.00 0.00 0.00 4.61
3164 3918 1.351017 GTTTCCACATCTCCTCCCACA 59.649 52.381 0.00 0.00 0.00 4.17
3165 3919 1.741028 TTCCACATCTCCTCCCACAA 58.259 50.000 0.00 0.00 0.00 3.33
3205 3959 1.135915 CTCACATCCTTCACTCCGGAG 59.864 57.143 30.11 30.11 31.82 4.63
3207 3961 0.904865 ACATCCTTCACTCCGGAGCA 60.905 55.000 31.56 15.71 31.82 4.26
3208 3962 0.179089 CATCCTTCACTCCGGAGCAG 60.179 60.000 31.56 23.24 31.82 4.24
3220 3974 1.607148 CCGGAGCAGATCGTACATGTA 59.393 52.381 0.08 0.08 0.00 2.29
3222 3976 2.667137 GGAGCAGATCGTACATGTAGC 58.333 52.381 5.62 5.11 0.00 3.58
3229 3983 0.244178 TCGTACATGTAGCGGTGCAA 59.756 50.000 20.20 0.00 0.00 4.08
3230 3984 0.368907 CGTACATGTAGCGGTGCAAC 59.631 55.000 9.98 2.63 0.00 4.17
3237 3991 0.958382 GTAGCGGTGCAACAATCCCA 60.958 55.000 0.98 0.00 39.98 4.37
3240 3994 1.580942 CGGTGCAACAATCCCACAG 59.419 57.895 0.98 0.00 39.98 3.66
3245 3999 1.142667 TGCAACAATCCCACAGACTCA 59.857 47.619 0.00 0.00 0.00 3.41
3249 4003 3.864789 ACAATCCCACAGACTCAAGTT 57.135 42.857 0.00 0.00 0.00 2.66
3252 4006 2.910688 TCCCACAGACTCAAGTTGTC 57.089 50.000 2.11 0.00 34.88 3.18
3254 4008 2.103094 TCCCACAGACTCAAGTTGTCAG 59.897 50.000 2.11 0.00 36.94 3.51
3256 4010 3.126831 CCACAGACTCAAGTTGTCAGTC 58.873 50.000 14.09 14.09 37.42 3.51
3271 4025 4.295119 GTCGGCGTCCACTGTGGT 62.295 66.667 25.15 0.00 39.03 4.16
3289 4043 0.759346 GTCTATCCAAGGCCCGACAT 59.241 55.000 0.00 0.00 0.00 3.06
3313 4067 0.744874 TAGACCAAATCTCCCTCGCG 59.255 55.000 0.00 0.00 39.04 5.87
3347 4101 0.324943 AAGGAGGTGGTCAATGGTCG 59.675 55.000 0.00 0.00 0.00 4.79
3353 4107 1.003839 TGGTCAATGGTCGCCTCAC 60.004 57.895 0.00 0.00 0.00 3.51
3355 4109 2.434185 TCAATGGTCGCCTCACGC 60.434 61.111 0.00 0.00 43.23 5.34
3422 4176 5.762218 AGTAAATCTCTGCTAATGATGCCAC 59.238 40.000 0.00 0.00 0.00 5.01
3450 4204 4.246458 CTCTGTTACTGTTGCTAACCCTC 58.754 47.826 0.00 0.00 0.00 4.30
3466 4220 5.880054 AACCCTCGTGTTAGATCAAAATG 57.120 39.130 0.00 0.00 0.00 2.32
3476 4230 9.993881 CGTGTTAGATCAAAATGTTTCAAAATC 57.006 29.630 0.00 0.00 0.00 2.17
3535 4291 9.796062 CTCAAATATCAAAACAAAAATGTTCGG 57.204 29.630 0.00 0.00 0.00 4.30
3541 4297 5.578727 TCAAAACAAAAATGTTCGGAAGGTG 59.421 36.000 0.00 0.00 0.00 4.00
3794 4550 1.229853 CCACTACCCCCACTCCCTT 60.230 63.158 0.00 0.00 0.00 3.95
3798 4554 2.486410 CTACCCCCACTCCCTTCCCA 62.486 65.000 0.00 0.00 0.00 4.37
3805 4561 0.615850 CACTCCCTTCCCAACTCTCC 59.384 60.000 0.00 0.00 0.00 3.71
3813 4569 2.571216 CCCAACTCTCCCACGTCGT 61.571 63.158 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 0.474184 CCCACTTGTGTCCCTGTCTT 59.526 55.000 0.00 0.00 0.00 3.01
199 202 2.875933 TGGAACCGCAAAAAGACTAGTG 59.124 45.455 0.00 0.00 0.00 2.74
281 297 6.648725 TTTTCTCTTAATACGAGCTTCTGC 57.351 37.500 0.00 0.00 40.05 4.26
347 380 0.033504 CAAGTGGCACAGGAGTACGT 59.966 55.000 21.41 0.00 41.80 3.57
354 387 3.742882 CGTGATATATCAAGTGGCACAGG 59.257 47.826 21.41 11.29 37.58 4.00
355 388 4.620982 TCGTGATATATCAAGTGGCACAG 58.379 43.478 22.70 12.04 37.58 3.66
356 389 4.664150 TCGTGATATATCAAGTGGCACA 57.336 40.909 22.70 0.00 38.75 4.57
357 390 4.389992 CCATCGTGATATATCAAGTGGCAC 59.610 45.833 22.70 10.29 38.75 5.01
359 392 4.569943 ACCATCGTGATATATCAAGTGGC 58.430 43.478 28.59 15.25 39.02 5.01
361 394 7.114953 GTGTGTACCATCGTGATATATCAAGTG 59.885 40.741 22.70 19.24 38.75 3.16
362 395 7.145985 GTGTGTACCATCGTGATATATCAAGT 58.854 38.462 22.70 14.83 38.75 3.16
363 396 6.305638 CGTGTGTACCATCGTGATATATCAAG 59.694 42.308 16.97 18.18 38.75 3.02
364 397 6.146898 CGTGTGTACCATCGTGATATATCAA 58.853 40.000 16.97 3.27 38.75 2.57
365 398 5.239963 ACGTGTGTACCATCGTGATATATCA 59.760 40.000 11.49 11.49 35.24 2.15
366 399 5.696822 ACGTGTGTACCATCGTGATATATC 58.303 41.667 5.73 5.73 35.24 1.63
375 408 3.363575 CCTGAAAAACGTGTGTACCATCG 60.364 47.826 0.00 0.00 0.00 3.84
397 430 6.015772 AGTCAGAGGAGACTAGTTTTCAGAAC 60.016 42.308 0.00 0.00 46.52 3.01
505 591 0.174389 GATCTGGAGACGAGCTTGCA 59.826 55.000 0.00 0.00 0.00 4.08
531 617 6.209788 ACTCTTTCTTCTAGTTGTAGGACCAG 59.790 42.308 0.00 0.00 0.00 4.00
652 739 2.358003 GCACAGCGCTTGTCTCCT 60.358 61.111 7.50 0.00 38.16 3.69
687 774 5.907866 AAAAGGAAAGGAAAAACTCGTGA 57.092 34.783 0.00 0.00 0.00 4.35
691 778 5.104693 TCCCCAAAAAGGAAAGGAAAAACTC 60.105 40.000 0.00 0.00 41.22 3.01
754 841 5.530915 ACTGGTCGAAATGAAGTGAATTTCA 59.469 36.000 8.98 0.00 41.90 2.69
794 881 9.438291 CGTCTTATATTAATGAAACAAAGGCAG 57.562 33.333 0.00 0.00 0.00 4.85
796 883 9.783256 AACGTCTTATATTAATGAAACAAAGGC 57.217 29.630 0.00 0.00 0.00 4.35
801 888 9.562583 GCCAAAACGTCTTATATTAATGAAACA 57.437 29.630 0.00 0.00 0.00 2.83
802 889 9.562583 TGCCAAAACGTCTTATATTAATGAAAC 57.437 29.630 0.00 0.00 0.00 2.78
842 1041 7.906010 TGTTCATTAATATAAGACGTTTTGGCG 59.094 33.333 0.83 0.00 37.94 5.69
930 1129 8.587608 AGGCAAACAAATTCAGAGAAATGATAA 58.412 29.630 0.00 0.00 0.00 1.75
939 1138 7.543947 AAAAAGAAGGCAAACAAATTCAGAG 57.456 32.000 0.00 0.00 0.00 3.35
1143 1345 2.187946 GCGATGTAGCAGCCCAGT 59.812 61.111 0.00 0.00 37.05 4.00
1260 1462 4.261155 GCGCATTTTTGCAGTATCCATCTA 60.261 41.667 0.30 0.00 34.41 1.98
1284 1486 2.225908 ACTAACCTGGGAGTGGGAGATT 60.226 50.000 0.00 0.00 0.00 2.40
1285 1487 1.366435 ACTAACCTGGGAGTGGGAGAT 59.634 52.381 0.00 0.00 0.00 2.75
1293 1495 6.042093 TCAATATTGAGCTACTAACCTGGGAG 59.958 42.308 14.23 0.00 32.50 4.30
1317 1524 6.503524 TGTGTGAATTAAAAAGCTCTTGGTC 58.496 36.000 0.00 0.00 0.00 4.02
1329 1536 9.103861 GGAAAGGAAACAAATGTGTGAATTAAA 57.896 29.630 0.00 0.00 38.27 1.52
1334 1541 5.930837 AGGAAAGGAAACAAATGTGTGAA 57.069 34.783 0.00 0.00 38.27 3.18
1361 1709 8.387354 TGAGCAAAATATACGTGTAATGTTCAG 58.613 33.333 13.85 2.61 37.25 3.02
1373 1721 4.389374 AGGTGGGATGAGCAAAATATACG 58.611 43.478 0.00 0.00 0.00 3.06
1384 1735 6.485984 CAGAAATCTGATTAAGGTGGGATGAG 59.514 42.308 4.37 0.00 46.59 2.90
1386 1737 6.630444 CAGAAATCTGATTAAGGTGGGATG 57.370 41.667 4.37 0.00 46.59 3.51
1403 1754 3.087031 CCTGCCACATTGAGTCAGAAAT 58.913 45.455 0.00 0.00 0.00 2.17
1404 1755 2.507484 CCTGCCACATTGAGTCAGAAA 58.493 47.619 0.00 0.00 0.00 2.52
1409 1760 1.589716 GCACCCTGCCACATTGAGTC 61.590 60.000 0.00 0.00 37.42 3.36
1410 1761 1.604593 GCACCCTGCCACATTGAGT 60.605 57.895 0.00 0.00 37.42 3.41
1468 2185 5.574188 AGAAACAAAGGCAAGGATCTACAT 58.426 37.500 0.00 0.00 0.00 2.29
1490 2207 2.094390 CCATCAGAACACCAATGCCAAG 60.094 50.000 0.00 0.00 0.00 3.61
1525 2242 9.599866 TTGTTATGACTCTGAATGGTTATGTAG 57.400 33.333 0.00 0.00 0.00 2.74
1531 2248 8.830580 CGATTATTGTTATGACTCTGAATGGTT 58.169 33.333 0.00 0.00 0.00 3.67
1589 2306 3.914312 TCTTAATGATCGAATCGCCCTC 58.086 45.455 0.00 0.00 0.00 4.30
1607 2324 4.377021 TGATTGCACAACTCGTTACTCTT 58.623 39.130 0.00 0.00 0.00 2.85
1669 2386 2.346803 TGAAGCAGCAAACGGAGATAC 58.653 47.619 0.00 0.00 0.00 2.24
1673 2390 2.712057 AAATGAAGCAGCAAACGGAG 57.288 45.000 0.00 0.00 0.00 4.63
1739 2456 0.251634 CTCCTCCCCTTGAAGCTGAC 59.748 60.000 0.00 0.00 0.00 3.51
1765 2482 8.333908 CAAAGTGCACTGATATCATAGTTCTTC 58.666 37.037 22.49 0.00 0.00 2.87
1778 2495 3.055819 ACGATACTCCAAAGTGCACTGAT 60.056 43.478 22.49 10.09 36.92 2.90
1816 2533 9.646522 ACCAATGCTCCAATAAAAGTAAGATAT 57.353 29.630 0.00 0.00 0.00 1.63
1822 2539 6.245408 AGTCACCAATGCTCCAATAAAAGTA 58.755 36.000 0.00 0.00 0.00 2.24
1913 2630 1.032014 TTGCTCCTGGAACTTGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
2030 2747 5.220662 CCATTAGAACAATGCTGACGGTTAG 60.221 44.000 0.00 0.00 0.00 2.34
2075 2798 5.710099 CCAGCATAAGAGTTTGGACCTTTTA 59.290 40.000 0.00 0.00 0.00 1.52
2126 2853 4.592942 ACAGTAATGGTTCATGTCAGCAT 58.407 39.130 6.54 6.54 33.74 3.79
2153 2884 3.181483 GGAATCGCCATCTTGCAAGAAAT 60.181 43.478 31.55 14.87 38.77 2.17
2157 2888 1.097232 TGGAATCGCCATCTTGCAAG 58.903 50.000 20.81 20.81 43.33 4.01
2182 2913 0.762418 ACCCGATGTGGAACTCAACA 59.238 50.000 0.00 0.00 42.00 3.33
2185 2916 0.037697 CGAACCCGATGTGGAACTCA 60.038 55.000 0.00 0.00 42.00 3.41
2223 2954 2.646175 GCAGCGGTGTACCCTCTCA 61.646 63.158 17.07 0.00 0.00 3.27
2335 3066 2.360350 ATGCCCAACAGCTGACCG 60.360 61.111 23.35 7.78 0.00 4.79
2344 3075 1.188863 AATTCAGAGCCATGCCCAAC 58.811 50.000 0.00 0.00 0.00 3.77
2379 3110 1.093159 CAGGAAGAACTGCATCTGGC 58.907 55.000 0.00 0.00 45.13 4.85
2472 3203 0.168128 GCCGTGGTTTATGTGCAGAC 59.832 55.000 0.00 0.00 0.00 3.51
2535 3266 4.526970 TGTCCAAGAAAAGGGATAGCATC 58.473 43.478 0.00 0.00 35.25 3.91
2581 3315 9.924650 GAACTATTCAGAGAGGTACTTACAAAA 57.075 33.333 0.00 0.00 41.55 2.44
2583 3317 8.880991 AGAACTATTCAGAGAGGTACTTACAA 57.119 34.615 0.00 0.00 41.55 2.41
2595 3329 6.463995 AGCTTACAGGAGAACTATTCAGAG 57.536 41.667 0.00 0.00 0.00 3.35
2598 3332 5.178797 GCAAGCTTACAGGAGAACTATTCA 58.821 41.667 0.00 0.00 0.00 2.57
2658 3395 3.121328 CGCGCTTATGCTTCTATGTACAC 60.121 47.826 5.56 0.00 36.97 2.90
2663 3405 1.143305 AGCGCGCTTATGCTTCTATG 58.857 50.000 31.32 0.00 38.57 2.23
2716 3458 4.591321 AATAGCCATCCAACAGGAGAAA 57.409 40.909 0.00 0.00 34.25 2.52
2757 3499 7.708752 GTCCCAACAAGAAAACATTAACATTCA 59.291 33.333 0.00 0.00 0.00 2.57
2760 3502 7.118496 TGTCCCAACAAGAAAACATTAACAT 57.882 32.000 0.00 0.00 30.70 2.71
2768 3510 1.754226 TGCCTGTCCCAACAAGAAAAC 59.246 47.619 0.00 0.00 34.24 2.43
2824 3576 5.743026 TGAGTGTGCGTATTCAAGAAAAA 57.257 34.783 0.00 0.00 0.00 1.94
2825 3577 5.688823 CATGAGTGTGCGTATTCAAGAAAA 58.311 37.500 0.00 0.00 0.00 2.29
2826 3578 4.378356 GCATGAGTGTGCGTATTCAAGAAA 60.378 41.667 0.00 0.00 35.10 2.52
2827 3579 3.125146 GCATGAGTGTGCGTATTCAAGAA 59.875 43.478 0.00 0.00 35.10 2.52
2828 3580 2.672874 GCATGAGTGTGCGTATTCAAGA 59.327 45.455 0.00 0.00 35.10 3.02
2829 3581 3.043635 GCATGAGTGTGCGTATTCAAG 57.956 47.619 0.00 0.00 35.10 3.02
2838 3590 2.540515 ACATAGTACGCATGAGTGTGC 58.459 47.619 12.80 2.91 40.58 4.57
2839 3591 7.924103 TTAATACATAGTACGCATGAGTGTG 57.076 36.000 12.80 8.17 39.22 3.82
2840 3592 8.410912 TCTTTAATACATAGTACGCATGAGTGT 58.589 33.333 12.80 3.70 42.14 3.55
2841 3593 8.797266 TCTTTAATACATAGTACGCATGAGTG 57.203 34.615 12.80 0.00 0.00 3.51
2842 3594 9.464714 CTTCTTTAATACATAGTACGCATGAGT 57.535 33.333 7.41 7.41 0.00 3.41
2843 3595 9.678941 TCTTCTTTAATACATAGTACGCATGAG 57.321 33.333 14.97 0.00 0.00 2.90
2847 3599 9.459640 GTCATCTTCTTTAATACATAGTACGCA 57.540 33.333 0.00 0.00 0.00 5.24
2848 3600 9.680315 AGTCATCTTCTTTAATACATAGTACGC 57.320 33.333 0.00 0.00 0.00 4.42
2873 3625 9.627395 CCCGTCATCTTCTTTAATACATAGTAG 57.373 37.037 0.00 0.00 0.00 2.57
2880 3632 5.758784 CCTTCCCCGTCATCTTCTTTAATAC 59.241 44.000 0.00 0.00 0.00 1.89
2893 3645 3.098445 AAGGATTCCTTCCCCGTCA 57.902 52.632 12.37 0.00 46.81 4.35
2904 3656 2.165301 CGCCGACGTGGAAGGATTC 61.165 63.158 0.00 0.00 42.00 2.52
2907 3659 3.744719 CTCGCCGACGTGGAAGGA 61.745 66.667 0.00 0.00 42.00 3.36
2910 3662 1.588824 ATGTACTCGCCGACGTGGAA 61.589 55.000 0.00 0.00 42.00 3.53
2918 3670 2.602878 ACTTGTAACATGTACTCGCCG 58.397 47.619 0.00 0.00 0.00 6.46
2920 3672 6.642683 ATGTAACTTGTAACATGTACTCGC 57.357 37.500 0.00 0.00 35.06 5.03
2961 3713 7.160049 AGGCTAGAGTAGTTTTCCAGTTTTAC 58.840 38.462 0.00 0.00 0.00 2.01
2968 3720 5.421374 GGAACTAGGCTAGAGTAGTTTTCCA 59.579 44.000 27.59 0.00 39.15 3.53
2988 3740 1.212751 GTGGGCAAATGCGAGGAAC 59.787 57.895 0.00 0.00 43.26 3.62
2989 3741 1.976474 GGTGGGCAAATGCGAGGAA 60.976 57.895 0.00 0.00 43.26 3.36
2991 3743 1.978617 AAGGTGGGCAAATGCGAGG 60.979 57.895 0.00 0.00 43.26 4.63
2997 3749 0.972471 GGCTAGCAAGGTGGGCAAAT 60.972 55.000 18.24 0.00 0.00 2.32
3003 3755 2.592308 GGAGGGCTAGCAAGGTGG 59.408 66.667 18.24 0.00 0.00 4.61
3020 3772 2.035321 GGGAATGTAGAGCCTCTCTTCG 59.965 54.545 0.00 0.00 41.50 3.79
3021 3773 2.035321 CGGGAATGTAGAGCCTCTCTTC 59.965 54.545 0.00 0.35 41.50 2.87
3042 3794 5.115480 TGGAAACAAGCCAAAATCTTGAAC 58.885 37.500 9.40 1.56 42.52 3.18
3060 3812 2.435938 GAGGGACGCGCATGGAAA 60.436 61.111 5.73 0.00 0.00 3.13
3071 3823 1.203994 TCGGAATTGAAGACGAGGGAC 59.796 52.381 0.00 0.00 0.00 4.46
3091 3845 2.915659 TCCTCACGGGTGCTCGTT 60.916 61.111 0.00 0.00 41.86 3.85
3098 3852 2.363147 GCCTCTCTCCTCACGGGT 60.363 66.667 0.00 0.00 36.25 5.28
3117 3871 0.800683 CGCGATTGTCTTAGACGGCA 60.801 55.000 0.00 0.00 34.95 5.69
3132 3886 3.442512 TGGAAACACCGGAACGCGA 62.443 57.895 15.93 0.00 45.08 5.87
3148 3902 2.162681 GTTTTGTGGGAGGAGATGTGG 58.837 52.381 0.00 0.00 0.00 4.17
3158 3912 2.967201 TCTTACTCCTCGTTTTGTGGGA 59.033 45.455 0.00 0.00 0.00 4.37
3159 3913 3.396260 TCTTACTCCTCGTTTTGTGGG 57.604 47.619 0.00 0.00 0.00 4.61
3161 3915 3.060895 GCGATCTTACTCCTCGTTTTGTG 59.939 47.826 0.00 0.00 34.96 3.33
3162 3916 3.251571 GCGATCTTACTCCTCGTTTTGT 58.748 45.455 0.00 0.00 34.96 2.83
3163 3917 2.603560 GGCGATCTTACTCCTCGTTTTG 59.396 50.000 0.00 0.00 34.96 2.44
3164 3918 2.418334 GGGCGATCTTACTCCTCGTTTT 60.418 50.000 0.00 0.00 34.96 2.43
3165 3919 1.136500 GGGCGATCTTACTCCTCGTTT 59.864 52.381 0.00 0.00 34.96 3.60
3205 3959 1.269102 ACCGCTACATGTACGATCTGC 60.269 52.381 21.55 13.45 0.00 4.26
3207 3961 1.269102 GCACCGCTACATGTACGATCT 60.269 52.381 21.55 7.59 0.00 2.75
3208 3962 1.129326 GCACCGCTACATGTACGATC 58.871 55.000 21.55 11.02 0.00 3.69
3220 3974 2.115052 TGGGATTGTTGCACCGCT 59.885 55.556 0.00 0.00 0.00 5.52
3222 3976 0.888736 TCTGTGGGATTGTTGCACCG 60.889 55.000 0.00 0.00 0.00 4.94
3229 3983 3.117888 ACAACTTGAGTCTGTGGGATTGT 60.118 43.478 0.00 0.00 0.00 2.71
3230 3984 3.480470 ACAACTTGAGTCTGTGGGATTG 58.520 45.455 0.00 0.00 0.00 2.67
3237 3991 2.223829 CCGACTGACAACTTGAGTCTGT 60.224 50.000 5.70 5.70 46.42 3.41
3240 3994 1.140816 GCCGACTGACAACTTGAGTC 58.859 55.000 0.00 0.00 36.55 3.36
3245 3999 1.300697 GGACGCCGACTGACAACTT 60.301 57.895 0.00 0.00 0.00 2.66
3249 4003 2.910479 AGTGGACGCCGACTGACA 60.910 61.111 0.00 0.00 0.00 3.58
3252 4006 2.734723 CACAGTGGACGCCGACTG 60.735 66.667 12.12 12.12 44.38 3.51
3254 4008 4.295119 ACCACAGTGGACGCCGAC 62.295 66.667 27.39 0.00 40.96 4.79
3256 4010 1.945354 ATAGACCACAGTGGACGCCG 61.945 60.000 27.39 0.00 40.96 6.46
3271 4025 1.968493 GTATGTCGGGCCTTGGATAGA 59.032 52.381 0.84 0.00 0.00 1.98
3313 4067 1.266989 CTCCTTTTGGGTTGCGTCTTC 59.733 52.381 0.00 0.00 40.87 2.87
3327 4081 1.271379 CGACCATTGACCACCTCCTTT 60.271 52.381 0.00 0.00 0.00 3.11
3355 4109 3.740128 ATGCCCCTTCTACGCGCAG 62.740 63.158 5.73 1.58 32.06 5.18
3358 4112 2.173669 CACATGCCCCTTCTACGCG 61.174 63.158 3.53 3.53 0.00 6.01
3422 4176 1.792949 GCAACAGTAACAGAGGTGACG 59.207 52.381 0.00 0.00 33.20 4.35
3450 4204 9.993881 GATTTTGAAACATTTTGATCTAACACG 57.006 29.630 0.00 0.00 0.00 4.49
3509 4265 9.796062 CCGAACATTTTTGTTTTGATATTTGAG 57.204 29.630 0.00 0.00 31.35 3.02
3528 4284 7.110155 ACTTAATTATGTCACCTTCCGAACAT 58.890 34.615 0.00 0.00 36.40 2.71
3794 4550 2.273179 CGACGTGGGAGAGTTGGGA 61.273 63.158 0.00 0.00 0.00 4.37
3798 4554 1.000496 GAAGAACGACGTGGGAGAGTT 60.000 52.381 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.