Multiple sequence alignment - TraesCS2D01G477600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G477600 chr2D 100.000 2387 0 0 1 2387 579512061 579509675 0.000000e+00 4409.0
1 TraesCS2D01G477600 chr2B 88.649 1436 130 14 189 1610 697379694 697378278 0.000000e+00 1718.0
2 TraesCS2D01G477600 chr2B 88.655 1428 137 8 189 1607 697399512 697398101 0.000000e+00 1716.0
3 TraesCS2D01G477600 chr2B 88.486 1433 132 14 189 1607 697342186 697340773 0.000000e+00 1701.0
4 TraesCS2D01G477600 chr2B 88.362 1435 136 10 189 1607 697295963 697294544 0.000000e+00 1696.0
5 TraesCS2D01G477600 chr2B 88.478 1432 122 19 189 1607 697143280 697141879 0.000000e+00 1690.0
6 TraesCS2D01G477600 chr2B 88.963 1341 125 8 275 1607 697015555 697014230 0.000000e+00 1635.0
7 TraesCS2D01G477600 chr2B 90.048 1246 104 7 368 1607 697229315 697228084 0.000000e+00 1596.0
8 TraesCS2D01G477600 chr2B 89.968 1246 106 6 368 1607 697158080 697156848 0.000000e+00 1591.0
9 TraesCS2D01G477600 chr2B 90.581 499 37 7 1897 2387 697358966 697358470 0.000000e+00 652.0
10 TraesCS2D01G477600 chr2B 90.581 499 37 7 1897 2387 697377831 697377335 0.000000e+00 652.0
11 TraesCS2D01G477600 chr2B 90.381 499 38 7 1897 2387 697340321 697339825 0.000000e+00 647.0
12 TraesCS2D01G477600 chr2B 90.303 495 42 5 1897 2387 697397744 697397252 0.000000e+00 643.0
13 TraesCS2D01G477600 chr2B 92.361 432 29 4 1957 2387 697156305 697155877 1.570000e-171 612.0
14 TraesCS2D01G477600 chr2B 92.130 432 30 4 1957 2387 697141384 697140956 7.300000e-170 606.0
15 TraesCS2D01G477600 chr2B 91.435 432 34 3 1957 2387 697010512 697010083 7.350000e-165 590.0
16 TraesCS2D01G477600 chr2B 92.468 385 26 3 2004 2387 697227251 697226869 4.490000e-152 547.0
17 TraesCS2D01G477600 chr2B 92.126 254 19 1 2134 2387 697289903 697289651 8.110000e-95 357.0
18 TraesCS2D01G477600 chr2B 83.957 187 21 7 189 372 697257533 697257353 1.130000e-38 171.0
19 TraesCS2D01G477600 chr2B 86.000 150 16 4 189 335 697185809 697185662 3.180000e-34 156.0
20 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697010643 697010608 7.120000e-06 62.1
21 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697156428 697156393 7.120000e-06 62.1
22 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697294125 697294090 7.120000e-06 62.1
23 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697340353 697340318 7.120000e-06 62.1
24 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697358998 697358963 7.120000e-06 62.1
25 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697377863 697377828 7.120000e-06 62.1
26 TraesCS2D01G477600 chr2B 97.222 36 1 0 1605 1640 697397776 697397741 7.120000e-06 62.1
27 TraesCS2D01G477600 chr2A 78.076 707 143 9 792 1490 773563499 773562797 1.010000e-118 436.0
28 TraesCS2D01G477600 chr4A 85.769 260 32 3 1642 1901 132995534 132995280 1.090000e-68 270.0
29 TraesCS2D01G477600 chr5D 84.270 267 35 3 1639 1900 247375814 247376078 1.100000e-63 254.0
30 TraesCS2D01G477600 chr5B 84.921 252 36 2 1646 1897 656935941 656935692 1.100000e-63 254.0
31 TraesCS2D01G477600 chr4B 83.835 266 41 2 1636 1900 429353826 429354090 3.940000e-63 252.0
32 TraesCS2D01G477600 chr4B 84.861 251 33 3 1639 1889 166765516 166765761 5.100000e-62 248.0
33 TraesCS2D01G477600 chrUn 85.081 248 32 3 1642 1889 216298423 216298181 5.100000e-62 248.0
34 TraesCS2D01G477600 chr4D 85.081 248 32 3 1642 1889 131326056 131325814 5.100000e-62 248.0
35 TraesCS2D01G477600 chr4D 83.206 262 42 2 1639 1900 503360799 503361058 3.070000e-59 239.0
36 TraesCS2D01G477600 chr3A 83.721 258 41 1 1642 1899 91026751 91026495 2.370000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G477600 chr2D 579509675 579512061 2386 True 4409.000000 4409 100.000000 1 2387 1 chr2D.!!$R1 2386
1 TraesCS2D01G477600 chr2B 697140956 697143280 2324 True 1148.000000 1690 90.304000 189 2387 2 chr2B.!!$R5 2198
2 TraesCS2D01G477600 chr2B 697226869 697229315 2446 True 1071.500000 1596 91.258000 368 2387 2 chr2B.!!$R7 2019
3 TraesCS2D01G477600 chr2B 697294090 697295963 1873 True 879.050000 1696 92.792000 189 1640 2 chr2B.!!$R8 1451
4 TraesCS2D01G477600 chr2B 697377335 697379694 2359 True 810.700000 1718 92.150667 189 2387 3 chr2B.!!$R11 2198
5 TraesCS2D01G477600 chr2B 697397252 697399512 2260 True 807.033333 1716 92.060000 189 2387 3 chr2B.!!$R12 2198
6 TraesCS2D01G477600 chr2B 697339825 697342186 2361 True 803.366667 1701 92.029667 189 2387 3 chr2B.!!$R9 2198
7 TraesCS2D01G477600 chr2B 697010083 697015555 5472 True 762.366667 1635 92.540000 275 2387 3 chr2B.!!$R4 2112
8 TraesCS2D01G477600 chr2B 697155877 697158080 2203 True 755.033333 1591 93.183667 368 2387 3 chr2B.!!$R6 2019
9 TraesCS2D01G477600 chr2B 697358470 697358998 528 True 357.050000 652 93.901500 1605 2387 2 chr2B.!!$R10 782
10 TraesCS2D01G477600 chr2A 773562797 773563499 702 True 436.000000 436 78.076000 792 1490 1 chr2A.!!$R1 698


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.398318 ACTTTGTCACTCTGGCCTCC 59.602 55.0 3.32 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1401 1.128188 AACAGAGTTTCGGCCTCCCT 61.128 55.0 0.0 0.0 0.0 4.2 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.954352 GGTCCCCTAATTCCTCTATGTTAT 57.046 41.667 0.00 0.00 0.00 1.89
25 26 8.445361 GGTCCCCTAATTCCTCTATGTTATAA 57.555 38.462 0.00 0.00 0.00 0.98
26 27 9.059023 GGTCCCCTAATTCCTCTATGTTATAAT 57.941 37.037 0.00 0.00 0.00 1.28
36 37 9.959721 TTCCTCTATGTTATAATTCTTATGCCC 57.040 33.333 0.00 0.00 0.00 5.36
37 38 8.548877 TCCTCTATGTTATAATTCTTATGCCCC 58.451 37.037 0.00 0.00 0.00 5.80
38 39 7.495934 CCTCTATGTTATAATTCTTATGCCCCG 59.504 40.741 0.00 0.00 0.00 5.73
39 40 8.141298 TCTATGTTATAATTCTTATGCCCCGA 57.859 34.615 0.00 0.00 0.00 5.14
40 41 8.598916 TCTATGTTATAATTCTTATGCCCCGAA 58.401 33.333 0.00 0.00 0.00 4.30
41 42 9.226606 CTATGTTATAATTCTTATGCCCCGAAA 57.773 33.333 0.00 0.00 0.00 3.46
42 43 7.883391 TGTTATAATTCTTATGCCCCGAAAA 57.117 32.000 0.00 0.00 0.00 2.29
43 44 8.472007 TGTTATAATTCTTATGCCCCGAAAAT 57.528 30.769 0.00 0.00 0.00 1.82
44 45 8.356657 TGTTATAATTCTTATGCCCCGAAAATG 58.643 33.333 0.00 0.00 0.00 2.32
45 46 4.670896 AATTCTTATGCCCCGAAAATGG 57.329 40.909 0.00 0.00 0.00 3.16
46 47 2.818751 TCTTATGCCCCGAAAATGGT 57.181 45.000 0.00 0.00 0.00 3.55
47 48 3.935818 TCTTATGCCCCGAAAATGGTA 57.064 42.857 0.00 0.00 0.00 3.25
48 49 3.547746 TCTTATGCCCCGAAAATGGTAC 58.452 45.455 0.00 0.00 0.00 3.34
49 50 3.201266 TCTTATGCCCCGAAAATGGTACT 59.799 43.478 0.00 0.00 0.00 2.73
50 51 2.525105 ATGCCCCGAAAATGGTACTT 57.475 45.000 0.00 0.00 0.00 2.24
51 52 2.296073 TGCCCCGAAAATGGTACTTT 57.704 45.000 0.00 0.00 0.00 2.66
52 53 1.889829 TGCCCCGAAAATGGTACTTTG 59.110 47.619 0.00 0.00 0.00 2.77
53 54 1.890489 GCCCCGAAAATGGTACTTTGT 59.110 47.619 0.00 0.00 0.00 2.83
54 55 2.094906 GCCCCGAAAATGGTACTTTGTC 60.095 50.000 0.00 0.00 0.00 3.18
55 56 3.150767 CCCCGAAAATGGTACTTTGTCA 58.849 45.455 0.00 0.00 0.00 3.58
56 57 3.057806 CCCCGAAAATGGTACTTTGTCAC 60.058 47.826 0.00 0.00 0.00 3.67
57 58 3.818773 CCCGAAAATGGTACTTTGTCACT 59.181 43.478 0.00 0.00 0.00 3.41
58 59 4.083484 CCCGAAAATGGTACTTTGTCACTC 60.083 45.833 0.00 0.00 0.00 3.51
59 60 4.755123 CCGAAAATGGTACTTTGTCACTCT 59.245 41.667 0.00 0.00 0.00 3.24
60 61 5.334105 CCGAAAATGGTACTTTGTCACTCTG 60.334 44.000 0.00 0.00 0.00 3.35
61 62 5.334105 CGAAAATGGTACTTTGTCACTCTGG 60.334 44.000 0.00 0.00 0.00 3.86
62 63 2.543777 TGGTACTTTGTCACTCTGGC 57.456 50.000 0.00 0.00 0.00 4.85
63 64 1.071699 TGGTACTTTGTCACTCTGGCC 59.928 52.381 0.00 0.00 0.00 5.36
64 65 1.348036 GGTACTTTGTCACTCTGGCCT 59.652 52.381 3.32 0.00 0.00 5.19
65 66 2.613223 GGTACTTTGTCACTCTGGCCTC 60.613 54.545 3.32 0.00 0.00 4.70
66 67 0.398318 ACTTTGTCACTCTGGCCTCC 59.602 55.000 3.32 0.00 0.00 4.30
67 68 0.689623 CTTTGTCACTCTGGCCTCCT 59.310 55.000 3.32 0.00 0.00 3.69
68 69 1.072965 CTTTGTCACTCTGGCCTCCTT 59.927 52.381 3.32 0.00 0.00 3.36
69 70 1.140312 TTGTCACTCTGGCCTCCTTT 58.860 50.000 3.32 0.00 0.00 3.11
70 71 0.687354 TGTCACTCTGGCCTCCTTTC 59.313 55.000 3.32 0.00 0.00 2.62
71 72 0.687354 GTCACTCTGGCCTCCTTTCA 59.313 55.000 3.32 0.00 0.00 2.69
72 73 1.072331 GTCACTCTGGCCTCCTTTCAA 59.928 52.381 3.32 0.00 0.00 2.69
73 74 1.774254 TCACTCTGGCCTCCTTTCAAA 59.226 47.619 3.32 0.00 0.00 2.69
74 75 2.376518 TCACTCTGGCCTCCTTTCAAAT 59.623 45.455 3.32 0.00 0.00 2.32
75 76 3.587061 TCACTCTGGCCTCCTTTCAAATA 59.413 43.478 3.32 0.00 0.00 1.40
76 77 4.228210 TCACTCTGGCCTCCTTTCAAATAT 59.772 41.667 3.32 0.00 0.00 1.28
77 78 4.952335 CACTCTGGCCTCCTTTCAAATATT 59.048 41.667 3.32 0.00 0.00 1.28
78 79 5.067023 CACTCTGGCCTCCTTTCAAATATTC 59.933 44.000 3.32 0.00 0.00 1.75
79 80 5.191727 TCTGGCCTCCTTTCAAATATTCA 57.808 39.130 3.32 0.00 0.00 2.57
80 81 5.769835 TCTGGCCTCCTTTCAAATATTCAT 58.230 37.500 3.32 0.00 0.00 2.57
81 82 5.829924 TCTGGCCTCCTTTCAAATATTCATC 59.170 40.000 3.32 0.00 0.00 2.92
82 83 5.517924 TGGCCTCCTTTCAAATATTCATCA 58.482 37.500 3.32 0.00 0.00 3.07
83 84 6.138263 TGGCCTCCTTTCAAATATTCATCAT 58.862 36.000 3.32 0.00 0.00 2.45
84 85 6.041182 TGGCCTCCTTTCAAATATTCATCATG 59.959 38.462 3.32 0.00 0.00 3.07
85 86 6.266103 GGCCTCCTTTCAAATATTCATCATGA 59.734 38.462 0.00 0.00 0.00 3.07
86 87 7.144000 GCCTCCTTTCAAATATTCATCATGAC 58.856 38.462 0.00 0.00 0.00 3.06
87 88 7.201848 GCCTCCTTTCAAATATTCATCATGACA 60.202 37.037 0.00 0.00 0.00 3.58
88 89 8.133627 CCTCCTTTCAAATATTCATCATGACAC 58.866 37.037 0.00 0.00 0.00 3.67
89 90 8.578448 TCCTTTCAAATATTCATCATGACACA 57.422 30.769 0.00 0.00 0.00 3.72
90 91 9.192642 TCCTTTCAAATATTCATCATGACACAT 57.807 29.630 0.00 0.00 0.00 3.21
91 92 9.811995 CCTTTCAAATATTCATCATGACACATT 57.188 29.630 0.00 0.00 0.00 2.71
95 96 9.575783 TCAAATATTCATCATGACACATTGTTG 57.424 29.630 0.00 0.00 0.00 3.33
96 97 7.997107 AATATTCATCATGACACATTGTTGC 57.003 32.000 0.00 0.00 0.00 4.17
97 98 4.850347 TTCATCATGACACATTGTTGCA 57.150 36.364 0.00 0.00 0.00 4.08
98 99 5.394224 TTCATCATGACACATTGTTGCAT 57.606 34.783 0.00 0.00 0.00 3.96
99 100 4.989044 TCATCATGACACATTGTTGCATC 58.011 39.130 0.00 0.00 0.00 3.91
100 101 4.703093 TCATCATGACACATTGTTGCATCT 59.297 37.500 0.00 0.00 0.00 2.90
101 102 5.184287 TCATCATGACACATTGTTGCATCTT 59.816 36.000 0.00 0.00 0.00 2.40
102 103 6.374894 TCATCATGACACATTGTTGCATCTTA 59.625 34.615 0.00 0.00 0.00 2.10
103 104 6.185852 TCATGACACATTGTTGCATCTTAG 57.814 37.500 0.00 0.00 0.00 2.18
104 105 5.124297 TCATGACACATTGTTGCATCTTAGG 59.876 40.000 0.00 0.00 0.00 2.69
105 106 4.397420 TGACACATTGTTGCATCTTAGGT 58.603 39.130 0.00 0.00 0.00 3.08
106 107 4.216042 TGACACATTGTTGCATCTTAGGTG 59.784 41.667 11.18 11.18 0.00 4.00
107 108 4.144297 ACACATTGTTGCATCTTAGGTGT 58.856 39.130 12.09 12.09 32.62 4.16
108 109 4.584325 ACACATTGTTGCATCTTAGGTGTT 59.416 37.500 12.09 2.35 33.59 3.32
109 110 5.156355 CACATTGTTGCATCTTAGGTGTTC 58.844 41.667 0.00 0.00 0.00 3.18
110 111 4.218417 ACATTGTTGCATCTTAGGTGTTCC 59.782 41.667 0.00 0.00 0.00 3.62
111 112 2.790433 TGTTGCATCTTAGGTGTTCCC 58.210 47.619 0.00 0.00 0.00 3.97
112 113 2.092323 GTTGCATCTTAGGTGTTCCCC 58.908 52.381 0.00 0.00 0.00 4.81
113 114 1.367346 TGCATCTTAGGTGTTCCCCA 58.633 50.000 0.00 0.00 0.00 4.96
114 115 1.707989 TGCATCTTAGGTGTTCCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
115 116 2.311542 TGCATCTTAGGTGTTCCCCAAT 59.688 45.455 0.00 0.00 0.00 3.16
116 117 2.689983 GCATCTTAGGTGTTCCCCAATG 59.310 50.000 0.00 0.00 0.00 2.82
117 118 3.877735 GCATCTTAGGTGTTCCCCAATGT 60.878 47.826 0.00 0.00 0.00 2.71
118 119 4.627741 GCATCTTAGGTGTTCCCCAATGTA 60.628 45.833 0.00 0.00 0.00 2.29
119 120 5.694995 CATCTTAGGTGTTCCCCAATGTAT 58.305 41.667 0.00 0.00 0.00 2.29
120 121 5.110814 TCTTAGGTGTTCCCCAATGTATG 57.889 43.478 0.00 0.00 0.00 2.39
121 122 4.538490 TCTTAGGTGTTCCCCAATGTATGT 59.462 41.667 0.00 0.00 0.00 2.29
122 123 3.085952 AGGTGTTCCCCAATGTATGTG 57.914 47.619 0.00 0.00 0.00 3.21
123 124 2.378547 AGGTGTTCCCCAATGTATGTGT 59.621 45.455 0.00 0.00 0.00 3.72
124 125 2.491693 GGTGTTCCCCAATGTATGTGTG 59.508 50.000 0.00 0.00 0.00 3.82
125 126 3.153919 GTGTTCCCCAATGTATGTGTGT 58.846 45.455 0.00 0.00 0.00 3.72
126 127 4.328536 GTGTTCCCCAATGTATGTGTGTA 58.671 43.478 0.00 0.00 0.00 2.90
127 128 4.155280 GTGTTCCCCAATGTATGTGTGTAC 59.845 45.833 0.00 0.00 0.00 2.90
128 129 4.042311 TGTTCCCCAATGTATGTGTGTACT 59.958 41.667 0.00 0.00 0.00 2.73
129 130 4.481368 TCCCCAATGTATGTGTGTACTC 57.519 45.455 0.00 0.00 0.00 2.59
130 131 3.841255 TCCCCAATGTATGTGTGTACTCA 59.159 43.478 0.00 0.00 0.00 3.41
131 132 4.473196 TCCCCAATGTATGTGTGTACTCAT 59.527 41.667 0.24 5.12 34.79 2.90
132 133 5.663556 TCCCCAATGTATGTGTGTACTCATA 59.336 40.000 0.24 0.00 32.93 2.15
133 134 5.758296 CCCCAATGTATGTGTGTACTCATAC 59.242 44.000 21.41 21.41 45.88 2.39
143 144 7.222000 TGTGTGTACTCATACATAAGACACA 57.778 36.000 0.24 0.00 43.21 3.72
144 145 7.662897 TGTGTGTACTCATACATAAGACACAA 58.337 34.615 6.52 0.00 45.06 3.33
145 146 8.145122 TGTGTGTACTCATACATAAGACACAAA 58.855 33.333 6.52 0.00 45.06 2.83
146 147 8.984764 GTGTGTACTCATACATAAGACACAAAA 58.015 33.333 6.52 0.00 45.06 2.44
147 148 9.203421 TGTGTACTCATACATAAGACACAAAAG 57.797 33.333 2.65 0.00 43.21 2.27
148 149 9.419297 GTGTACTCATACATAAGACACAAAAGA 57.581 33.333 0.00 0.00 43.21 2.52
308 314 4.793201 ACTATCTGGCCCTTTTGATTACC 58.207 43.478 0.00 0.00 0.00 2.85
315 321 2.099405 CCCTTTTGATTACCGCCACAT 58.901 47.619 0.00 0.00 0.00 3.21
316 322 2.159254 CCCTTTTGATTACCGCCACATG 60.159 50.000 0.00 0.00 0.00 3.21
340 346 6.893554 TGTTATGGCGGTGGAGTATATACTAT 59.106 38.462 15.42 5.70 36.50 2.12
344 350 6.907961 TGGCGGTGGAGTATATACTATCTAT 58.092 40.000 15.42 0.00 36.50 1.98
345 351 8.037723 TGGCGGTGGAGTATATACTATCTATA 57.962 38.462 15.42 0.00 36.50 1.31
346 352 7.935755 TGGCGGTGGAGTATATACTATCTATAC 59.064 40.741 15.42 8.25 36.50 1.47
347 353 7.935755 GGCGGTGGAGTATATACTATCTATACA 59.064 40.741 15.42 0.00 36.50 2.29
348 354 8.991026 GCGGTGGAGTATATACTATCTATACAG 58.009 40.741 15.42 9.72 36.50 2.74
360 366 7.147143 ACTATCTATACAGCCATAGTCAACG 57.853 40.000 0.00 0.00 27.73 4.10
432 438 2.915349 CTACTACCACCGTCTCTAGCA 58.085 52.381 0.00 0.00 0.00 3.49
451 457 7.691213 TCTAGCAGTAGAGTGTATTAGCCTAT 58.309 38.462 0.00 0.00 31.23 2.57
456 462 8.091449 GCAGTAGAGTGTATTAGCCTATTTCAT 58.909 37.037 0.00 0.00 0.00 2.57
663 669 6.861055 GTGTAACTGTCACACCCAATAAAATG 59.139 38.462 2.67 0.00 40.33 2.32
669 675 7.068839 ACTGTCACACCCAATAAAATGTTGTAA 59.931 33.333 0.00 0.00 0.00 2.41
705 712 6.552725 TCAAAATGCCTATATTTGGGTATGCA 59.447 34.615 0.00 0.00 35.34 3.96
707 714 8.530311 CAAAATGCCTATATTTGGGTATGCATA 58.470 33.333 1.16 1.16 37.22 3.14
720 727 7.888250 TGGGTATGCATACAATTAATGTTCA 57.112 32.000 32.19 14.07 43.63 3.18
721 728 8.476064 TGGGTATGCATACAATTAATGTTCAT 57.524 30.769 32.19 0.00 43.63 2.57
820 828 7.532546 TCATAAATGTCGTTTTCAATTCACGTC 59.467 33.333 0.00 0.00 35.40 4.34
876 884 7.691993 ATAGTGATGTCTATTTAACCACCCT 57.308 36.000 0.00 0.00 0.00 4.34
884 892 6.386927 TGTCTATTTAACCACCCTCATCTCAT 59.613 38.462 0.00 0.00 0.00 2.90
907 915 4.157849 TGTTGTGGAACCACTCACATTA 57.842 40.909 21.98 0.34 46.30 1.90
918 926 2.736721 CACTCACATTACCAGTTCACCG 59.263 50.000 0.00 0.00 0.00 4.94
945 958 2.601763 CCACATAAACCGACTCGCTAAC 59.398 50.000 0.00 0.00 0.00 2.34
980 993 9.717942 CCTCATTAACCAACCAAAATTTTCATA 57.282 29.630 0.00 0.00 0.00 2.15
1020 1033 2.638480 TGAGGACAACCAGTTTCCTG 57.362 50.000 14.81 0.00 40.02 3.86
1034 1047 1.495584 TTCCTGCTCGTCGTTGTTGC 61.496 55.000 0.00 0.00 0.00 4.17
1037 1050 2.127609 GCTCGTCGTTGTTGCTGC 60.128 61.111 0.00 0.00 0.00 5.25
1044 1057 1.135972 GTCGTTGTTGCTGCGATCATT 60.136 47.619 0.00 0.00 37.00 2.57
1053 1066 2.624364 TGCTGCGATCATTTATGCCATT 59.376 40.909 0.00 0.00 0.00 3.16
1067 1080 1.563879 TGCCATTAGTGTACCAGCCAT 59.436 47.619 0.00 0.00 0.00 4.40
1091 1104 2.817258 GTTGTGGTGAATCGATGGGAAA 59.183 45.455 0.00 0.00 0.00 3.13
1171 1184 1.751927 CACATCCAGGAGCTTGGCC 60.752 63.158 0.00 0.00 38.16 5.36
1239 1252 0.916086 TCAACAAGGTGGTGAGTGGT 59.084 50.000 0.00 0.00 39.52 4.16
1396 1409 0.542333 GGTGAACTAAGAGGGAGGCC 59.458 60.000 0.00 0.00 0.00 5.19
1403 1416 1.137282 CTAAGAGGGAGGCCGAAACTC 59.863 57.143 0.00 4.29 0.00 3.01
1414 1427 2.488153 GGCCGAAACTCTGTTAGCAATT 59.512 45.455 0.00 0.00 0.00 2.32
1424 1437 7.744087 ACTCTGTTAGCAATTATTGTGTTCA 57.256 32.000 6.81 1.91 0.00 3.18
1445 1458 9.625747 TGTTCATGGAATTATGTTAGCTCATTA 57.374 29.630 0.00 0.00 0.00 1.90
1493 1506 3.738282 TCGCATTGCCATGTGTTTTTAAC 59.262 39.130 10.76 0.00 41.12 2.01
1494 1507 3.492383 CGCATTGCCATGTGTTTTTAACA 59.508 39.130 2.41 0.00 36.32 2.41
1495 1508 4.152045 CGCATTGCCATGTGTTTTTAACAT 59.848 37.500 2.41 0.00 44.35 2.71
1536 1549 7.818997 ACATCTGCAACTTGATTATGATGAT 57.181 32.000 10.97 0.00 35.45 2.45
1648 5258 7.579761 AAAACTATTACTAGTAGTCCCTCCG 57.420 40.000 5.96 0.00 37.20 4.63
1649 5259 5.903198 ACTATTACTAGTAGTCCCTCCGT 57.097 43.478 5.96 0.00 36.40 4.69
1650 5260 6.259346 ACTATTACTAGTAGTCCCTCCGTT 57.741 41.667 5.96 0.00 36.40 4.44
1651 5261 6.295249 ACTATTACTAGTAGTCCCTCCGTTC 58.705 44.000 5.96 0.00 36.40 3.95
1652 5262 2.433662 ACTAGTAGTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
1653 5263 1.637553 ACTAGTAGTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
1654 5264 2.244252 ACTAGTAGTCCCTCCGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
1655 5265 3.461085 ACTAGTAGTCCCTCCGTTCCATA 59.539 47.826 0.00 0.00 0.00 2.74
1656 5266 3.393426 AGTAGTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
1657 5267 3.924922 AGTAGTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
1658 5268 3.641906 AGTAGTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
1659 5269 2.478292 AGTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
1660 5270 3.649843 AGTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
1661 5271 3.641906 AGTCCCTCCGTTCCATAATGTAG 59.358 47.826 0.00 0.00 0.00 2.74
1662 5272 3.387050 GTCCCTCCGTTCCATAATGTAGT 59.613 47.826 0.00 0.00 0.00 2.73
1663 5273 3.386726 TCCCTCCGTTCCATAATGTAGTG 59.613 47.826 0.00 0.00 0.00 2.74
1664 5274 3.131396 CCTCCGTTCCATAATGTAGTGC 58.869 50.000 0.00 0.00 0.00 4.40
1665 5275 3.431626 CCTCCGTTCCATAATGTAGTGCA 60.432 47.826 0.00 0.00 0.00 4.57
1666 5276 4.380531 CTCCGTTCCATAATGTAGTGCAT 58.619 43.478 0.00 0.00 40.03 3.96
1667 5277 5.510690 CCTCCGTTCCATAATGTAGTGCATA 60.511 44.000 0.00 0.00 36.67 3.14
1668 5278 5.294356 TCCGTTCCATAATGTAGTGCATAC 58.706 41.667 0.00 0.00 36.67 2.39
1698 5308 7.469537 TTTTTAAGAAGTCAAACCTCACCAA 57.530 32.000 0.00 0.00 0.00 3.67
1699 5309 7.469537 TTTTAAGAAGTCAAACCTCACCAAA 57.530 32.000 0.00 0.00 0.00 3.28
1700 5310 7.654022 TTTAAGAAGTCAAACCTCACCAAAT 57.346 32.000 0.00 0.00 0.00 2.32
1701 5311 7.654022 TTAAGAAGTCAAACCTCACCAAATT 57.346 32.000 0.00 0.00 0.00 1.82
1702 5312 6.544928 AAGAAGTCAAACCTCACCAAATTT 57.455 33.333 0.00 0.00 0.00 1.82
1703 5313 5.906073 AGAAGTCAAACCTCACCAAATTTG 58.094 37.500 11.40 11.40 34.11 2.32
1704 5314 5.656416 AGAAGTCAAACCTCACCAAATTTGA 59.344 36.000 19.86 0.00 38.42 2.69
1706 5316 4.664150 TCAAACCTCACCAAATTTGACC 57.336 40.909 19.86 0.00 36.42 4.02
1707 5317 3.067461 TCAAACCTCACCAAATTTGACCG 59.933 43.478 19.86 5.60 36.42 4.79
1708 5318 2.649531 ACCTCACCAAATTTGACCGA 57.350 45.000 19.86 11.03 0.00 4.69
1709 5319 2.504367 ACCTCACCAAATTTGACCGAG 58.496 47.619 19.86 18.46 0.00 4.63
1710 5320 2.158667 ACCTCACCAAATTTGACCGAGT 60.159 45.455 19.86 5.52 0.00 4.18
1711 5321 2.884639 CCTCACCAAATTTGACCGAGTT 59.115 45.455 19.86 0.00 0.00 3.01
1712 5322 3.317993 CCTCACCAAATTTGACCGAGTTT 59.682 43.478 19.86 0.00 0.00 2.66
1713 5323 4.290155 CTCACCAAATTTGACCGAGTTTG 58.710 43.478 19.86 1.99 0.00 2.93
1714 5324 3.697045 TCACCAAATTTGACCGAGTTTGT 59.303 39.130 19.86 2.63 31.42 2.83
1715 5325 4.882427 TCACCAAATTTGACCGAGTTTGTA 59.118 37.500 19.86 0.00 31.42 2.41
1716 5326 5.008217 TCACCAAATTTGACCGAGTTTGTAG 59.992 40.000 19.86 0.57 31.42 2.74
1717 5327 5.008217 CACCAAATTTGACCGAGTTTGTAGA 59.992 40.000 19.86 0.00 31.42 2.59
1718 5328 5.768164 ACCAAATTTGACCGAGTTTGTAGAT 59.232 36.000 19.86 0.00 31.42 1.98
1719 5329 6.938030 ACCAAATTTGACCGAGTTTGTAGATA 59.062 34.615 19.86 0.00 31.42 1.98
1720 5330 7.446013 ACCAAATTTGACCGAGTTTGTAGATAA 59.554 33.333 19.86 0.00 31.42 1.75
1721 5331 8.293867 CCAAATTTGACCGAGTTTGTAGATAAA 58.706 33.333 19.86 0.00 31.42 1.40
1722 5332 9.672086 CAAATTTGACCGAGTTTGTAGATAAAA 57.328 29.630 13.08 0.00 0.00 1.52
1836 5446 8.635765 AATAGGTTTCTTCATAAACTTGCTCA 57.364 30.769 0.00 0.00 38.98 4.26
1837 5447 6.959639 AGGTTTCTTCATAAACTTGCTCAA 57.040 33.333 0.00 0.00 38.98 3.02
1838 5448 7.346751 AGGTTTCTTCATAAACTTGCTCAAA 57.653 32.000 0.00 0.00 38.98 2.69
1839 5449 7.428826 AGGTTTCTTCATAAACTTGCTCAAAG 58.571 34.615 0.00 0.00 38.98 2.77
1840 5450 6.144563 GGTTTCTTCATAAACTTGCTCAAAGC 59.855 38.462 0.00 0.00 39.76 3.51
1841 5451 6.639632 TTCTTCATAAACTTGCTCAAAGCT 57.360 33.333 0.11 0.00 42.97 3.74
1842 5452 6.639632 TCTTCATAAACTTGCTCAAAGCTT 57.360 33.333 0.00 0.00 42.97 3.74
1843 5453 6.441274 TCTTCATAAACTTGCTCAAAGCTTG 58.559 36.000 0.00 0.00 42.97 4.01
1844 5454 5.772825 TCATAAACTTGCTCAAAGCTTGT 57.227 34.783 0.00 0.00 42.97 3.16
1845 5455 6.875948 TCATAAACTTGCTCAAAGCTTGTA 57.124 33.333 0.00 0.00 42.97 2.41
1846 5456 7.270757 TCATAAACTTGCTCAAAGCTTGTAA 57.729 32.000 0.00 0.00 42.97 2.41
1847 5457 7.711846 TCATAAACTTGCTCAAAGCTTGTAAA 58.288 30.769 0.00 0.00 42.97 2.01
1848 5458 8.359642 TCATAAACTTGCTCAAAGCTTGTAAAT 58.640 29.630 0.00 0.00 42.97 1.40
1849 5459 8.981647 CATAAACTTGCTCAAAGCTTGTAAATT 58.018 29.630 0.00 0.00 42.97 1.82
1850 5460 7.848223 AAACTTGCTCAAAGCTTGTAAATTT 57.152 28.000 0.00 0.00 42.97 1.82
1851 5461 7.848223 AACTTGCTCAAAGCTTGTAAATTTT 57.152 28.000 0.00 0.00 42.97 1.82
1852 5462 7.237920 ACTTGCTCAAAGCTTGTAAATTTTG 57.762 32.000 0.00 0.00 42.97 2.44
1853 5463 7.041107 ACTTGCTCAAAGCTTGTAAATTTTGA 58.959 30.769 0.00 0.00 42.97 2.69
1854 5464 7.548780 ACTTGCTCAAAGCTTGTAAATTTTGAA 59.451 29.630 0.00 0.00 42.97 2.69
1855 5465 8.436046 TTGCTCAAAGCTTGTAAATTTTGAAT 57.564 26.923 0.00 0.00 42.97 2.57
1856 5466 8.436046 TGCTCAAAGCTTGTAAATTTTGAATT 57.564 26.923 0.00 0.00 42.97 2.17
1857 5467 8.891720 TGCTCAAAGCTTGTAAATTTTGAATTT 58.108 25.926 0.00 4.32 42.97 1.82
1858 5468 9.720667 GCTCAAAGCTTGTAAATTTTGAATTTT 57.279 25.926 0.00 0.00 38.19 1.82
1887 5497 9.772973 AAAAATCTATACGCACTACATTATGGA 57.227 29.630 0.00 0.00 0.00 3.41
1888 5498 9.772973 AAAATCTATACGCACTACATTATGGAA 57.227 29.630 0.00 0.00 0.00 3.53
1889 5499 9.944376 AAATCTATACGCACTACATTATGGAAT 57.056 29.630 0.00 0.00 0.00 3.01
1890 5500 8.932945 ATCTATACGCACTACATTATGGAATG 57.067 34.615 0.00 0.00 46.77 2.67
1891 5501 7.320399 TCTATACGCACTACATTATGGAATGG 58.680 38.462 0.00 0.00 45.83 3.16
1892 5502 4.415881 ACGCACTACATTATGGAATGGA 57.584 40.909 0.00 0.00 45.83 3.41
1893 5503 4.776349 ACGCACTACATTATGGAATGGAA 58.224 39.130 0.00 0.00 45.83 3.53
1894 5504 4.816385 ACGCACTACATTATGGAATGGAAG 59.184 41.667 0.00 2.71 45.83 3.46
1895 5505 4.214119 CGCACTACATTATGGAATGGAAGG 59.786 45.833 0.00 0.00 45.83 3.46
1896 5506 5.376625 GCACTACATTATGGAATGGAAGGA 58.623 41.667 0.00 0.00 45.83 3.36
1897 5507 5.471456 GCACTACATTATGGAATGGAAGGAG 59.529 44.000 0.00 0.00 45.83 3.69
1898 5508 6.595682 CACTACATTATGGAATGGAAGGAGT 58.404 40.000 0.00 0.00 45.83 3.85
1899 5509 7.689313 GCACTACATTATGGAATGGAAGGAGTA 60.689 40.741 0.00 0.00 45.83 2.59
1950 5560 2.443394 CCTCTCCCGCATAAGGCCA 61.443 63.158 5.01 0.00 40.31 5.36
1951 5561 1.526887 CTCTCCCGCATAAGGCCAA 59.473 57.895 5.01 0.00 40.31 4.52
1952 5562 0.533755 CTCTCCCGCATAAGGCCAAG 60.534 60.000 5.01 0.00 40.31 3.61
1954 5564 0.107214 CTCCCGCATAAGGCCAAGAA 60.107 55.000 5.01 0.00 40.31 2.52
1964 5636 8.774586 CCGCATAAGGCCAAGAATTATATATAC 58.225 37.037 5.01 0.00 40.31 1.47
2098 5770 5.501156 AGTTTCACCCTCTATTAAGCAAGG 58.499 41.667 0.00 0.00 0.00 3.61
2202 5874 5.678583 GATCATCAGGGTGATCTTTCTCAA 58.321 41.667 13.90 0.00 46.97 3.02
2208 5880 5.726308 TCAGGGTGATCTTTCTCAATTCCTA 59.274 40.000 0.00 0.00 0.00 2.94
2211 5883 5.586643 GGGTGATCTTTCTCAATTCCTACAC 59.413 44.000 0.00 0.00 0.00 2.90
2213 5885 6.655003 GGTGATCTTTCTCAATTCCTACACAA 59.345 38.462 0.00 0.00 0.00 3.33
2215 5887 7.173218 GTGATCTTTCTCAATTCCTACACAACA 59.827 37.037 0.00 0.00 0.00 3.33
2220 5892 7.724305 TTCTCAATTCCTACACAACAGTTAC 57.276 36.000 0.00 0.00 0.00 2.50
2295 5967 6.978343 TCATTAATAGGTTCCTCACAAACG 57.022 37.500 0.00 0.00 0.00 3.60
2306 5978 6.238703 GGTTCCTCACAAACGTTATTACCAAA 60.239 38.462 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.959721 GGGCATAAGAATTATAACATAGAGGAA 57.040 33.333 0.00 0.00 39.78 3.36
11 12 8.548877 GGGGCATAAGAATTATAACATAGAGGA 58.451 37.037 0.00 0.00 39.78 3.71
12 13 7.495934 CGGGGCATAAGAATTATAACATAGAGG 59.504 40.741 0.00 0.00 39.78 3.69
13 14 8.258007 TCGGGGCATAAGAATTATAACATAGAG 58.742 37.037 0.00 0.00 39.78 2.43
14 15 8.141298 TCGGGGCATAAGAATTATAACATAGA 57.859 34.615 0.00 0.00 39.78 1.98
15 16 8.786826 TTCGGGGCATAAGAATTATAACATAG 57.213 34.615 0.00 0.00 39.78 2.23
16 17 9.575868 TTTTCGGGGCATAAGAATTATAACATA 57.424 29.630 0.00 0.00 39.78 2.29
17 18 8.472007 TTTTCGGGGCATAAGAATTATAACAT 57.528 30.769 0.00 0.00 39.78 2.71
18 19 7.883391 TTTTCGGGGCATAAGAATTATAACA 57.117 32.000 0.00 0.00 39.78 2.41
19 20 7.812669 CCATTTTCGGGGCATAAGAATTATAAC 59.187 37.037 0.00 0.00 39.78 1.89
20 21 7.507616 ACCATTTTCGGGGCATAAGAATTATAA 59.492 33.333 0.00 0.00 39.78 0.98
21 22 7.007723 ACCATTTTCGGGGCATAAGAATTATA 58.992 34.615 0.00 0.00 39.78 0.98
22 23 5.838521 ACCATTTTCGGGGCATAAGAATTAT 59.161 36.000 0.00 0.00 43.29 1.28
23 24 5.205056 ACCATTTTCGGGGCATAAGAATTA 58.795 37.500 0.00 0.00 33.48 1.40
24 25 4.030216 ACCATTTTCGGGGCATAAGAATT 58.970 39.130 0.00 0.00 0.00 2.17
25 26 3.642141 ACCATTTTCGGGGCATAAGAAT 58.358 40.909 0.00 0.00 0.00 2.40
26 27 3.094484 ACCATTTTCGGGGCATAAGAA 57.906 42.857 0.00 0.00 0.00 2.52
27 28 2.818751 ACCATTTTCGGGGCATAAGA 57.181 45.000 0.00 0.00 0.00 2.10
28 29 3.551846 AGTACCATTTTCGGGGCATAAG 58.448 45.455 0.00 0.00 0.00 1.73
29 30 3.655615 AGTACCATTTTCGGGGCATAA 57.344 42.857 0.00 0.00 0.00 1.90
30 31 3.655615 AAGTACCATTTTCGGGGCATA 57.344 42.857 0.00 0.00 0.00 3.14
31 32 2.495669 CAAAGTACCATTTTCGGGGCAT 59.504 45.455 0.00 0.00 0.00 4.40
32 33 1.889829 CAAAGTACCATTTTCGGGGCA 59.110 47.619 0.00 0.00 0.00 5.36
33 34 1.890489 ACAAAGTACCATTTTCGGGGC 59.110 47.619 0.00 0.00 0.00 5.80
34 35 3.057806 GTGACAAAGTACCATTTTCGGGG 60.058 47.826 0.00 0.00 0.00 5.73
35 36 3.818773 AGTGACAAAGTACCATTTTCGGG 59.181 43.478 0.00 0.00 0.00 5.14
36 37 4.755123 AGAGTGACAAAGTACCATTTTCGG 59.245 41.667 0.00 0.00 0.00 4.30
37 38 5.334105 CCAGAGTGACAAAGTACCATTTTCG 60.334 44.000 0.00 0.00 0.00 3.46
38 39 5.562890 GCCAGAGTGACAAAGTACCATTTTC 60.563 44.000 0.00 0.00 0.00 2.29
39 40 4.278419 GCCAGAGTGACAAAGTACCATTTT 59.722 41.667 0.00 0.00 0.00 1.82
40 41 3.821033 GCCAGAGTGACAAAGTACCATTT 59.179 43.478 0.00 0.00 0.00 2.32
41 42 3.412386 GCCAGAGTGACAAAGTACCATT 58.588 45.455 0.00 0.00 0.00 3.16
42 43 2.290323 GGCCAGAGTGACAAAGTACCAT 60.290 50.000 0.00 0.00 0.00 3.55
43 44 1.071699 GGCCAGAGTGACAAAGTACCA 59.928 52.381 0.00 0.00 0.00 3.25
44 45 1.348036 AGGCCAGAGTGACAAAGTACC 59.652 52.381 5.01 0.00 0.00 3.34
45 46 2.613223 GGAGGCCAGAGTGACAAAGTAC 60.613 54.545 5.01 0.00 0.00 2.73
46 47 1.623811 GGAGGCCAGAGTGACAAAGTA 59.376 52.381 5.01 0.00 0.00 2.24
47 48 0.398318 GGAGGCCAGAGTGACAAAGT 59.602 55.000 5.01 0.00 0.00 2.66
48 49 0.689623 AGGAGGCCAGAGTGACAAAG 59.310 55.000 5.01 0.00 0.00 2.77
49 50 1.140312 AAGGAGGCCAGAGTGACAAA 58.860 50.000 5.01 0.00 0.00 2.83
50 51 1.072331 GAAAGGAGGCCAGAGTGACAA 59.928 52.381 5.01 0.00 0.00 3.18
51 52 0.687354 GAAAGGAGGCCAGAGTGACA 59.313 55.000 5.01 0.00 0.00 3.58
52 53 0.687354 TGAAAGGAGGCCAGAGTGAC 59.313 55.000 5.01 0.00 0.00 3.67
53 54 1.434188 TTGAAAGGAGGCCAGAGTGA 58.566 50.000 5.01 0.00 0.00 3.41
54 55 2.276732 TTTGAAAGGAGGCCAGAGTG 57.723 50.000 5.01 0.00 0.00 3.51
55 56 4.870021 ATATTTGAAAGGAGGCCAGAGT 57.130 40.909 5.01 0.00 0.00 3.24
56 57 5.195940 TGAATATTTGAAAGGAGGCCAGAG 58.804 41.667 5.01 0.00 0.00 3.35
57 58 5.191727 TGAATATTTGAAAGGAGGCCAGA 57.808 39.130 5.01 0.00 0.00 3.86
58 59 5.595542 TGATGAATATTTGAAAGGAGGCCAG 59.404 40.000 5.01 0.00 0.00 4.85
59 60 5.517924 TGATGAATATTTGAAAGGAGGCCA 58.482 37.500 5.01 0.00 0.00 5.36
60 61 6.266103 TCATGATGAATATTTGAAAGGAGGCC 59.734 38.462 0.00 0.00 0.00 5.19
61 62 7.144000 GTCATGATGAATATTTGAAAGGAGGC 58.856 38.462 0.00 0.00 0.00 4.70
62 63 8.133627 GTGTCATGATGAATATTTGAAAGGAGG 58.866 37.037 0.00 0.00 0.00 4.30
63 64 8.680001 TGTGTCATGATGAATATTTGAAAGGAG 58.320 33.333 0.00 0.00 0.00 3.69
64 65 8.578448 TGTGTCATGATGAATATTTGAAAGGA 57.422 30.769 0.00 0.00 0.00 3.36
65 66 9.811995 AATGTGTCATGATGAATATTTGAAAGG 57.188 29.630 0.00 0.00 0.00 3.11
69 70 9.575783 CAACAATGTGTCATGATGAATATTTGA 57.424 29.630 0.00 0.00 0.00 2.69
70 71 8.325282 GCAACAATGTGTCATGATGAATATTTG 58.675 33.333 0.00 2.66 0.00 2.32
71 72 8.035984 TGCAACAATGTGTCATGATGAATATTT 58.964 29.630 0.00 0.00 0.00 1.40
72 73 7.548967 TGCAACAATGTGTCATGATGAATATT 58.451 30.769 0.00 0.00 0.00 1.28
73 74 7.102847 TGCAACAATGTGTCATGATGAATAT 57.897 32.000 0.00 0.00 0.00 1.28
74 75 6.512342 TGCAACAATGTGTCATGATGAATA 57.488 33.333 0.00 0.00 0.00 1.75
75 76 5.394224 TGCAACAATGTGTCATGATGAAT 57.606 34.783 0.00 0.00 0.00 2.57
76 77 4.850347 TGCAACAATGTGTCATGATGAA 57.150 36.364 0.00 0.00 0.00 2.57
77 78 4.703093 AGATGCAACAATGTGTCATGATGA 59.297 37.500 0.00 0.00 0.00 2.92
78 79 4.993905 AGATGCAACAATGTGTCATGATG 58.006 39.130 0.00 0.00 0.00 3.07
79 80 5.654603 AAGATGCAACAATGTGTCATGAT 57.345 34.783 0.00 0.00 0.00 2.45
80 81 5.124297 CCTAAGATGCAACAATGTGTCATGA 59.876 40.000 5.55 0.00 0.00 3.07
81 82 5.106038 ACCTAAGATGCAACAATGTGTCATG 60.106 40.000 5.55 0.00 0.00 3.07
82 83 5.012239 ACCTAAGATGCAACAATGTGTCAT 58.988 37.500 0.00 1.19 0.00 3.06
83 84 4.216042 CACCTAAGATGCAACAATGTGTCA 59.784 41.667 0.00 0.00 0.00 3.58
84 85 4.216257 ACACCTAAGATGCAACAATGTGTC 59.784 41.667 0.00 0.00 29.06 3.67
85 86 4.144297 ACACCTAAGATGCAACAATGTGT 58.856 39.130 0.00 0.00 0.00 3.72
86 87 4.771590 ACACCTAAGATGCAACAATGTG 57.228 40.909 0.00 0.00 0.00 3.21
87 88 4.218417 GGAACACCTAAGATGCAACAATGT 59.782 41.667 0.00 0.00 0.00 2.71
88 89 4.380867 GGGAACACCTAAGATGCAACAATG 60.381 45.833 0.00 0.00 35.85 2.82
89 90 3.763897 GGGAACACCTAAGATGCAACAAT 59.236 43.478 0.00 0.00 35.85 2.71
90 91 3.153919 GGGAACACCTAAGATGCAACAA 58.846 45.455 0.00 0.00 35.85 2.83
91 92 2.554344 GGGGAACACCTAAGATGCAACA 60.554 50.000 0.00 0.00 40.03 3.33
92 93 2.092323 GGGGAACACCTAAGATGCAAC 58.908 52.381 0.00 0.00 40.03 4.17
93 94 1.707989 TGGGGAACACCTAAGATGCAA 59.292 47.619 0.00 0.00 40.03 4.08
94 95 1.367346 TGGGGAACACCTAAGATGCA 58.633 50.000 0.00 0.00 40.03 3.96
95 96 2.507407 TTGGGGAACACCTAAGATGC 57.493 50.000 0.00 0.00 34.38 3.91
96 97 3.968265 ACATTGGGGAACACCTAAGATG 58.032 45.455 0.00 0.00 43.54 2.90
97 98 5.193728 ACATACATTGGGGAACACCTAAGAT 59.806 40.000 0.00 0.00 43.54 2.40
98 99 4.538490 ACATACATTGGGGAACACCTAAGA 59.462 41.667 0.00 0.00 43.54 2.10
99 100 4.640201 CACATACATTGGGGAACACCTAAG 59.360 45.833 0.00 0.00 43.54 2.18
100 101 4.043561 ACACATACATTGGGGAACACCTAA 59.956 41.667 0.00 0.00 44.49 2.69
101 102 3.589735 ACACATACATTGGGGAACACCTA 59.410 43.478 0.00 0.00 40.03 3.08
102 103 2.378547 ACACATACATTGGGGAACACCT 59.621 45.455 0.00 0.00 40.03 4.00
103 104 2.491693 CACACATACATTGGGGAACACC 59.508 50.000 0.00 0.00 39.11 4.16
104 105 3.153919 ACACACATACATTGGGGAACAC 58.846 45.455 0.00 0.00 30.69 3.32
105 106 3.517296 ACACACATACATTGGGGAACA 57.483 42.857 0.00 0.00 30.69 3.18
106 107 4.585879 AGTACACACATACATTGGGGAAC 58.414 43.478 0.00 0.00 30.69 3.62
107 108 4.287326 TGAGTACACACATACATTGGGGAA 59.713 41.667 0.00 0.00 30.69 3.97
108 109 3.841255 TGAGTACACACATACATTGGGGA 59.159 43.478 0.00 0.00 30.69 4.81
109 110 4.214986 TGAGTACACACATACATTGGGG 57.785 45.455 0.00 0.00 30.69 4.96
110 111 6.844696 GTATGAGTACACACATACATTGGG 57.155 41.667 18.94 0.00 44.40 4.12
116 117 9.234384 GTGTCTTATGTATGAGTACACACATAC 57.766 37.037 17.73 17.73 43.24 2.39
117 118 8.962679 TGTGTCTTATGTATGAGTACACACATA 58.037 33.333 13.00 0.00 41.52 2.29
118 119 7.836842 TGTGTCTTATGTATGAGTACACACAT 58.163 34.615 13.00 0.00 44.72 3.21
119 120 7.222000 TGTGTCTTATGTATGAGTACACACA 57.778 36.000 13.00 0.00 43.21 3.72
120 121 8.528917 TTTGTGTCTTATGTATGAGTACACAC 57.471 34.615 14.96 9.21 43.70 3.82
121 122 9.203421 CTTTTGTGTCTTATGTATGAGTACACA 57.797 33.333 13.00 13.00 43.21 3.72
122 123 9.419297 TCTTTTGTGTCTTATGTATGAGTACAC 57.581 33.333 0.00 0.00 43.21 2.90
292 298 0.968393 GGCGGTAATCAAAAGGGCCA 60.968 55.000 6.18 0.00 38.88 5.36
294 300 0.172578 GTGGCGGTAATCAAAAGGGC 59.827 55.000 0.00 0.00 0.00 5.19
315 321 5.081728 AGTATATACTCCACCGCCATAACA 58.918 41.667 9.71 0.00 0.00 2.41
316 322 5.656213 AGTATATACTCCACCGCCATAAC 57.344 43.478 9.71 0.00 0.00 1.89
340 346 4.037565 CACCGTTGACTATGGCTGTATAGA 59.962 45.833 9.21 0.00 36.26 1.98
344 350 1.206132 CCACCGTTGACTATGGCTGTA 59.794 52.381 0.00 0.00 36.26 2.74
345 351 0.036388 CCACCGTTGACTATGGCTGT 60.036 55.000 0.00 0.00 36.26 4.40
346 352 0.036388 ACCACCGTTGACTATGGCTG 60.036 55.000 0.00 0.00 36.26 4.85
347 353 1.563924 TACCACCGTTGACTATGGCT 58.436 50.000 0.00 0.00 36.26 4.75
348 354 2.614829 ATACCACCGTTGACTATGGC 57.385 50.000 0.00 0.00 36.26 4.40
386 392 4.752101 ACTTGTCATGTAAGAGTTGTCAGC 59.248 41.667 15.87 0.00 0.00 4.26
423 429 6.072893 GGCTAATACACTCTACTGCTAGAGAC 60.073 46.154 15.03 0.00 46.56 3.36
451 457 8.937207 AATGGGGAAATTCATGAAAAATGAAA 57.063 26.923 13.09 0.00 40.84 2.69
456 462 8.848182 CAAAGAAATGGGGAAATTCATGAAAAA 58.152 29.630 13.09 0.00 0.00 1.94
461 467 5.876460 GGTCAAAGAAATGGGGAAATTCATG 59.124 40.000 0.00 0.00 0.00 3.07
463 469 4.285775 GGGTCAAAGAAATGGGGAAATTCA 59.714 41.667 0.00 0.00 0.00 2.57
466 472 3.868062 TGGGTCAAAGAAATGGGGAAAT 58.132 40.909 0.00 0.00 0.00 2.17
548 554 5.316327 CCCAAAAAGGCATCTAGAAGAAC 57.684 43.478 0.00 0.00 35.39 3.01
626 632 7.750458 GTGTGACAGTTACACCAATATTCAATG 59.250 37.037 16.12 0.00 41.90 2.82
627 633 7.816640 GTGTGACAGTTACACCAATATTCAAT 58.183 34.615 16.12 0.00 41.90 2.57
663 669 8.598075 GGCATTTTGAATGAGATTGATTACAAC 58.402 33.333 4.92 0.00 38.90 3.32
727 734 8.514136 TCCGAACATGAATTTAAAACAACATC 57.486 30.769 0.00 0.00 0.00 3.06
785 793 9.952188 TGAAAACGACATTTATGACAACATTTA 57.048 25.926 0.00 0.00 37.87 1.40
810 818 5.027206 GATGCATATCCAGACGTGAATTG 57.973 43.478 0.00 0.00 0.00 2.32
842 850 8.894768 AAATAGACATCACTATAAGAGGCAAC 57.105 34.615 0.00 0.00 33.42 4.17
876 884 4.278170 GTGGTTCCACAACAAATGAGATGA 59.722 41.667 16.01 0.00 36.97 2.92
884 892 2.796557 TGTGAGTGGTTCCACAACAAA 58.203 42.857 21.71 13.93 39.97 2.83
907 915 3.637273 GGGCTCCGGTGAACTGGT 61.637 66.667 7.92 0.00 43.01 4.00
918 926 0.746923 GTCGGTTTATGTGGGGCTCC 60.747 60.000 0.00 0.00 0.00 4.70
945 958 4.021456 GGTTGGTTAATGAGGTTTTGGAGG 60.021 45.833 0.00 0.00 0.00 4.30
980 993 4.334203 TCATGGCGTATAAACTTTGCGATT 59.666 37.500 0.00 0.00 0.00 3.34
1020 1033 2.127609 GCAGCAACAACGACGAGC 60.128 61.111 0.00 0.00 0.00 5.03
1034 1047 5.049198 ACACTAATGGCATAAATGATCGCAG 60.049 40.000 0.00 0.00 0.00 5.18
1037 1050 6.426633 TGGTACACTAATGGCATAAATGATCG 59.573 38.462 0.00 0.00 0.00 3.69
1044 1057 3.201045 TGGCTGGTACACTAATGGCATAA 59.799 43.478 0.00 0.00 0.00 1.90
1053 1066 3.196901 CACAACCTATGGCTGGTACACTA 59.803 47.826 0.00 0.00 36.69 2.74
1067 1080 2.093181 CCCATCGATTCACCACAACCTA 60.093 50.000 0.00 0.00 0.00 3.08
1091 1104 2.360801 CCTGTCGTTTTCCACAATTGGT 59.639 45.455 10.83 0.00 44.35 3.67
1104 1117 2.355108 CCATCCATTCACTCCTGTCGTT 60.355 50.000 0.00 0.00 0.00 3.85
1134 1147 8.081633 TGGATGTGTTTGTCATTTATGTTCTTC 58.918 33.333 0.00 0.00 0.00 2.87
1171 1184 1.178534 AATTCCAACACCGCCCAGTG 61.179 55.000 0.00 0.00 43.65 3.66
1210 1223 2.223572 CCACCTTGTTGAACTTGAGCAC 60.224 50.000 0.00 0.00 0.00 4.40
1340 1353 3.018149 AGTTGGCGTTTCTTGGTTAACA 58.982 40.909 8.10 0.00 0.00 2.41
1344 1357 2.357952 GAGAAGTTGGCGTTTCTTGGTT 59.642 45.455 0.52 0.00 33.97 3.67
1388 1401 1.128188 AACAGAGTTTCGGCCTCCCT 61.128 55.000 0.00 0.00 0.00 4.20
1396 1409 7.298122 ACACAATAATTGCTAACAGAGTTTCG 58.702 34.615 0.00 0.00 0.00 3.46
1403 1416 7.537715 TCCATGAACACAATAATTGCTAACAG 58.462 34.615 0.00 0.00 0.00 3.16
1414 1427 9.407380 AGCTAACATAATTCCATGAACACAATA 57.593 29.630 0.00 0.00 0.00 1.90
1494 1507 9.797642 TGCAGATGTATGATCCTTAATTAACAT 57.202 29.630 0.00 0.00 0.00 2.71
1495 1508 9.625747 TTGCAGATGTATGATCCTTAATTAACA 57.374 29.630 0.00 0.00 0.00 2.41
1496 1509 9.884465 GTTGCAGATGTATGATCCTTAATTAAC 57.116 33.333 0.00 0.00 0.00 2.01
1497 1510 9.851686 AGTTGCAGATGTATGATCCTTAATTAA 57.148 29.630 0.00 0.00 0.00 1.40
1498 1511 9.851686 AAGTTGCAGATGTATGATCCTTAATTA 57.148 29.630 0.00 0.00 0.00 1.40
1499 1512 8.627403 CAAGTTGCAGATGTATGATCCTTAATT 58.373 33.333 0.00 0.00 0.00 1.40
1500 1513 7.994911 TCAAGTTGCAGATGTATGATCCTTAAT 59.005 33.333 0.00 0.00 0.00 1.40
1501 1514 7.337938 TCAAGTTGCAGATGTATGATCCTTAA 58.662 34.615 0.00 0.00 0.00 1.85
1502 1515 6.888105 TCAAGTTGCAGATGTATGATCCTTA 58.112 36.000 0.00 0.00 0.00 2.69
1503 1516 5.748402 TCAAGTTGCAGATGTATGATCCTT 58.252 37.500 0.00 0.00 0.00 3.36
1504 1517 5.363562 TCAAGTTGCAGATGTATGATCCT 57.636 39.130 0.00 0.00 0.00 3.24
1511 1524 8.913487 ATCATCATAATCAAGTTGCAGATGTA 57.087 30.769 15.63 8.49 34.71 2.29
1536 1549 9.802039 ACAATTATGTGTTCCCTTTTACTTCTA 57.198 29.630 0.00 0.00 38.69 2.10
1576 1597 9.067986 CAACTAAGGTAACAAATCTTCCTTCTT 57.932 33.333 0.00 0.00 39.00 2.52
1598 1619 6.055588 TCAAAGAGCTAGCAACTTTACAACT 58.944 36.000 27.08 11.62 33.44 3.16
1640 5250 3.387050 ACTACATTATGGAACGGAGGGAC 59.613 47.826 0.00 0.00 0.00 4.46
1642 5252 3.728845 CACTACATTATGGAACGGAGGG 58.271 50.000 0.00 0.00 0.00 4.30
1643 5253 3.131396 GCACTACATTATGGAACGGAGG 58.869 50.000 0.00 0.00 0.00 4.30
1644 5254 3.792401 TGCACTACATTATGGAACGGAG 58.208 45.455 0.00 0.00 0.00 4.63
1646 5256 5.053811 TGTATGCACTACATTATGGAACGG 58.946 41.667 0.00 0.00 40.38 4.44
1647 5257 5.983118 TCTGTATGCACTACATTATGGAACG 59.017 40.000 8.72 0.00 39.58 3.95
1648 5258 7.969536 ATCTGTATGCACTACATTATGGAAC 57.030 36.000 8.72 0.00 39.58 3.62
1649 5259 8.978874 AAATCTGTATGCACTACATTATGGAA 57.021 30.769 8.72 0.00 39.58 3.53
1650 5260 8.978874 AAAATCTGTATGCACTACATTATGGA 57.021 30.769 8.72 0.00 39.58 3.41
1674 5284 7.469537 TTGGTGAGGTTTGACTTCTTAAAAA 57.530 32.000 0.00 0.00 0.00 1.94
1675 5285 7.469537 TTTGGTGAGGTTTGACTTCTTAAAA 57.530 32.000 0.00 0.00 0.00 1.52
1676 5286 7.654022 ATTTGGTGAGGTTTGACTTCTTAAA 57.346 32.000 0.00 0.00 0.00 1.52
1677 5287 7.654022 AATTTGGTGAGGTTTGACTTCTTAA 57.346 32.000 0.00 0.00 0.00 1.85
1678 5288 7.340743 TCAAATTTGGTGAGGTTTGACTTCTTA 59.659 33.333 17.90 0.00 36.11 2.10
1679 5289 6.154363 TCAAATTTGGTGAGGTTTGACTTCTT 59.846 34.615 17.90 0.00 36.11 2.52
1680 5290 5.656416 TCAAATTTGGTGAGGTTTGACTTCT 59.344 36.000 17.90 0.00 36.11 2.85
1681 5291 5.901552 TCAAATTTGGTGAGGTTTGACTTC 58.098 37.500 17.90 0.00 36.11 3.01
1682 5292 5.930837 TCAAATTTGGTGAGGTTTGACTT 57.069 34.783 17.90 0.00 36.11 3.01
1685 5295 3.067461 CGGTCAAATTTGGTGAGGTTTGA 59.933 43.478 17.90 0.00 38.01 2.69
1686 5296 3.067461 TCGGTCAAATTTGGTGAGGTTTG 59.933 43.478 17.90 0.00 33.91 2.93
1687 5297 3.292460 TCGGTCAAATTTGGTGAGGTTT 58.708 40.909 17.90 0.00 0.00 3.27
1688 5298 2.884639 CTCGGTCAAATTTGGTGAGGTT 59.115 45.455 17.90 0.00 0.00 3.50
1689 5299 2.158667 ACTCGGTCAAATTTGGTGAGGT 60.159 45.455 25.23 15.34 0.00 3.85
1690 5300 2.504367 ACTCGGTCAAATTTGGTGAGG 58.496 47.619 25.23 14.90 0.00 3.86
1691 5301 4.202010 ACAAACTCGGTCAAATTTGGTGAG 60.202 41.667 22.46 22.46 36.55 3.51
1692 5302 3.697045 ACAAACTCGGTCAAATTTGGTGA 59.303 39.130 17.90 11.82 36.55 4.02
1693 5303 4.040445 ACAAACTCGGTCAAATTTGGTG 57.960 40.909 17.90 8.34 36.55 4.17
1694 5304 5.127491 TCTACAAACTCGGTCAAATTTGGT 58.873 37.500 17.90 4.88 36.55 3.67
1695 5305 5.682943 TCTACAAACTCGGTCAAATTTGG 57.317 39.130 17.90 4.24 36.55 3.28
1696 5306 9.672086 TTTTATCTACAAACTCGGTCAAATTTG 57.328 29.630 12.15 12.15 37.91 2.32
1810 5420 9.077885 TGAGCAAGTTTATGAAGAAACCTATTT 57.922 29.630 0.00 0.00 39.66 1.40
1811 5421 8.635765 TGAGCAAGTTTATGAAGAAACCTATT 57.364 30.769 0.00 0.00 39.66 1.73
1812 5422 8.635765 TTGAGCAAGTTTATGAAGAAACCTAT 57.364 30.769 0.00 0.00 39.66 2.57
1813 5423 8.458573 TTTGAGCAAGTTTATGAAGAAACCTA 57.541 30.769 0.00 0.00 39.66 3.08
1814 5424 6.959639 TTGAGCAAGTTTATGAAGAAACCT 57.040 33.333 0.00 0.00 39.66 3.50
1815 5425 6.144563 GCTTTGAGCAAGTTTATGAAGAAACC 59.855 38.462 0.00 0.00 41.89 3.27
1816 5426 6.920210 AGCTTTGAGCAAGTTTATGAAGAAAC 59.080 34.615 2.47 0.00 45.56 2.78
1817 5427 7.042797 AGCTTTGAGCAAGTTTATGAAGAAA 57.957 32.000 2.47 0.00 45.56 2.52
1818 5428 6.639632 AGCTTTGAGCAAGTTTATGAAGAA 57.360 33.333 2.47 0.00 45.56 2.52
1819 5429 6.039717 ACAAGCTTTGAGCAAGTTTATGAAGA 59.960 34.615 0.00 0.00 45.56 2.87
1820 5430 6.211515 ACAAGCTTTGAGCAAGTTTATGAAG 58.788 36.000 0.00 0.00 45.56 3.02
1821 5431 6.147864 ACAAGCTTTGAGCAAGTTTATGAA 57.852 33.333 0.00 0.00 45.56 2.57
1822 5432 5.772825 ACAAGCTTTGAGCAAGTTTATGA 57.227 34.783 0.00 0.00 45.56 2.15
1823 5433 7.928908 TTTACAAGCTTTGAGCAAGTTTATG 57.071 32.000 0.00 0.00 45.56 1.90
1824 5434 9.546428 AAATTTACAAGCTTTGAGCAAGTTTAT 57.454 25.926 0.00 0.00 45.56 1.40
1825 5435 8.940768 AAATTTACAAGCTTTGAGCAAGTTTA 57.059 26.923 0.00 0.00 45.56 2.01
1826 5436 7.848223 AAATTTACAAGCTTTGAGCAAGTTT 57.152 28.000 0.00 0.00 45.56 2.66
1827 5437 7.548780 TCAAAATTTACAAGCTTTGAGCAAGTT 59.451 29.630 0.00 0.00 45.56 2.66
1828 5438 7.041107 TCAAAATTTACAAGCTTTGAGCAAGT 58.959 30.769 0.00 3.06 45.56 3.16
1829 5439 7.467557 TCAAAATTTACAAGCTTTGAGCAAG 57.532 32.000 0.00 0.00 45.56 4.01
1830 5440 7.840342 TTCAAAATTTACAAGCTTTGAGCAA 57.160 28.000 0.00 0.00 45.56 3.91
1831 5441 8.436046 AATTCAAAATTTACAAGCTTTGAGCA 57.564 26.923 0.00 0.00 45.56 4.26
1832 5442 9.720667 AAAATTCAAAATTTACAAGCTTTGAGC 57.279 25.926 0.00 0.00 42.84 4.26
1861 5471 9.772973 TCCATAATGTAGTGCGTATAGATTTTT 57.227 29.630 0.00 0.00 0.00 1.94
1862 5472 9.772973 TTCCATAATGTAGTGCGTATAGATTTT 57.227 29.630 0.00 0.00 0.00 1.82
1863 5473 9.944376 ATTCCATAATGTAGTGCGTATAGATTT 57.056 29.630 0.00 0.00 0.00 2.17
1864 5474 9.371136 CATTCCATAATGTAGTGCGTATAGATT 57.629 33.333 0.00 0.00 38.15 2.40
1865 5475 7.981789 CCATTCCATAATGTAGTGCGTATAGAT 59.018 37.037 0.00 0.00 40.84 1.98
1866 5476 7.177744 TCCATTCCATAATGTAGTGCGTATAGA 59.822 37.037 0.00 0.00 40.84 1.98
1867 5477 7.320399 TCCATTCCATAATGTAGTGCGTATAG 58.680 38.462 0.00 0.00 40.84 1.31
1868 5478 7.234661 TCCATTCCATAATGTAGTGCGTATA 57.765 36.000 0.00 0.00 40.84 1.47
1869 5479 6.109156 TCCATTCCATAATGTAGTGCGTAT 57.891 37.500 0.00 0.00 40.84 3.06
1870 5480 5.538849 TCCATTCCATAATGTAGTGCGTA 57.461 39.130 0.00 0.00 40.84 4.42
1871 5481 4.415881 TCCATTCCATAATGTAGTGCGT 57.584 40.909 0.00 0.00 40.84 5.24
1872 5482 4.214119 CCTTCCATTCCATAATGTAGTGCG 59.786 45.833 0.00 0.00 40.84 5.34
1873 5483 5.376625 TCCTTCCATTCCATAATGTAGTGC 58.623 41.667 0.00 0.00 40.84 4.40
1874 5484 6.595682 ACTCCTTCCATTCCATAATGTAGTG 58.404 40.000 0.00 0.00 40.84 2.74
1875 5485 6.831664 ACTCCTTCCATTCCATAATGTAGT 57.168 37.500 0.00 0.00 40.84 2.73
1876 5486 8.432805 AGTTACTCCTTCCATTCCATAATGTAG 58.567 37.037 0.00 0.00 40.84 2.74
1877 5487 8.331931 AGTTACTCCTTCCATTCCATAATGTA 57.668 34.615 0.00 0.00 40.84 2.29
1878 5488 7.213178 AGTTACTCCTTCCATTCCATAATGT 57.787 36.000 0.00 0.00 40.84 2.71
1879 5489 8.525290 AAAGTTACTCCTTCCATTCCATAATG 57.475 34.615 0.00 0.00 41.90 1.90
1880 5490 9.547279 AAAAAGTTACTCCTTCCATTCCATAAT 57.453 29.630 0.00 0.00 0.00 1.28
1881 5491 8.950007 AAAAAGTTACTCCTTCCATTCCATAA 57.050 30.769 0.00 0.00 0.00 1.90
2006 5678 3.410631 TGGCTAAGTGGTCAATTTCGA 57.589 42.857 0.00 0.00 0.00 3.71
2011 5683 2.311542 TGGGAATGGCTAAGTGGTCAAT 59.688 45.455 0.00 0.00 0.00 2.57
2014 5686 2.507407 TTGGGAATGGCTAAGTGGTC 57.493 50.000 0.00 0.00 0.00 4.02
2149 5821 4.422073 TCGCTTGATGAAATATGGTCCT 57.578 40.909 0.00 0.00 0.00 3.85
2153 5825 9.285770 CATATTCATTCGCTTGATGAAATATGG 57.714 33.333 9.36 0.00 37.77 2.74
2272 5944 6.469410 ACGTTTGTGAGGAACCTATTAATGA 58.531 36.000 0.00 0.00 0.00 2.57
2274 5946 9.457436 AATAACGTTTGTGAGGAACCTATTAAT 57.543 29.630 5.91 0.00 0.00 1.40



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.