Multiple sequence alignment - TraesCS2D01G477400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G477400 chr2D 100.000 4049 0 0 1 4049 579392849 579388801 0.000000e+00 7478.0
1 TraesCS2D01G477400 chr2D 82.106 1738 283 18 1333 3052 579187707 579185980 0.000000e+00 1461.0
2 TraesCS2D01G477400 chr2D 93.529 170 10 1 240 408 14970119 14969950 6.720000e-63 252.0
3 TraesCS2D01G477400 chr2B 92.052 3372 224 25 715 4049 696675910 696672546 0.000000e+00 4702.0
4 TraesCS2D01G477400 chr2B 82.075 1735 289 14 1333 3052 696289764 696288037 0.000000e+00 1461.0
5 TraesCS2D01G477400 chr2B 89.496 238 12 7 2 239 696676247 696676023 5.120000e-74 289.0
6 TraesCS2D01G477400 chr2B 90.816 98 8 1 613 709 291611493 291611590 3.280000e-26 130.0
7 TraesCS2D01G477400 chr2B 100.000 28 0 0 573 600 696675947 696675920 7.000000e-03 52.8
8 TraesCS2D01G477400 chr2A 92.591 3145 190 28 941 4049 717142745 717139608 0.000000e+00 4477.0
9 TraesCS2D01G477400 chr2A 81.808 1737 284 18 1333 3052 716897679 716895958 0.000000e+00 1428.0
10 TraesCS2D01G477400 chr2A 89.005 191 19 1 721 909 717142934 717142744 6.770000e-58 235.0
11 TraesCS2D01G477400 chr2A 91.818 110 6 2 5 111 717143863 717143754 2.520000e-32 150.0
12 TraesCS2D01G477400 chr6B 82.946 774 118 10 3284 4046 67128057 67128827 0.000000e+00 686.0
13 TraesCS2D01G477400 chr6B 82.794 773 123 9 3284 4047 67320579 67321350 0.000000e+00 682.0
14 TraesCS2D01G477400 chr6B 82.876 765 114 13 3292 4046 67408272 67409029 0.000000e+00 671.0
15 TraesCS2D01G477400 chr6B 82.315 769 127 7 3283 4044 66988840 66989606 0.000000e+00 658.0
16 TraesCS2D01G477400 chr6B 83.721 344 50 4 3687 4026 67227553 67227894 1.820000e-83 320.0
17 TraesCS2D01G477400 chr6B 90.000 100 9 1 614 712 518389432 518389531 1.180000e-25 128.0
18 TraesCS2D01G477400 chr6D 97.647 170 4 0 237 406 470634022 470634191 3.960000e-75 292.0
19 TraesCS2D01G477400 chr7D 96.855 159 5 0 245 403 69438760 69438602 2.400000e-67 267.0
20 TraesCS2D01G477400 chr7D 94.578 166 8 1 245 409 184494127 184493962 5.190000e-64 255.0
21 TraesCS2D01G477400 chr7D 93.023 172 10 2 242 411 462354123 462354294 2.420000e-62 250.0
22 TraesCS2D01G477400 chr7D 88.182 110 9 4 603 709 258225571 258225679 1.180000e-25 128.0
23 TraesCS2D01G477400 chr7D 89.216 102 9 2 609 709 518639221 518639121 4.250000e-25 126.0
24 TraesCS2D01G477400 chr7D 89.109 101 10 1 610 709 190163115 190163215 1.530000e-24 124.0
25 TraesCS2D01G477400 chr7D 88.462 104 10 2 607 709 237270704 237270806 1.530000e-24 124.0
26 TraesCS2D01G477400 chr5D 95.652 161 7 0 245 405 120391653 120391813 4.010000e-65 259.0
27 TraesCS2D01G477400 chr5D 93.976 166 9 1 245 409 151671548 151671713 2.420000e-62 250.0
28 TraesCS2D01G477400 chr5D 87.387 111 11 3 610 718 228447063 228446954 1.530000e-24 124.0
29 TraesCS2D01G477400 chr3B 94.578 166 8 1 245 409 79116951 79117116 5.190000e-64 255.0
30 TraesCS2D01G477400 chr4D 94.512 164 9 0 242 405 58643754 58643917 1.870000e-63 254.0
31 TraesCS2D01G477400 chr4D 87.619 105 11 2 606 709 509117811 509117708 1.980000e-23 121.0
32 TraesCS2D01G477400 chr3D 87.037 108 12 2 608 713 613409884 613409991 1.980000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G477400 chr2D 579388801 579392849 4048 True 7478.000000 7478 100.000000 1 4049 1 chr2D.!!$R3 4048
1 TraesCS2D01G477400 chr2D 579185980 579187707 1727 True 1461.000000 1461 82.106000 1333 3052 1 chr2D.!!$R2 1719
2 TraesCS2D01G477400 chr2B 696672546 696676247 3701 True 1681.266667 4702 93.849333 2 4049 3 chr2B.!!$R2 4047
3 TraesCS2D01G477400 chr2B 696288037 696289764 1727 True 1461.000000 1461 82.075000 1333 3052 1 chr2B.!!$R1 1719
4 TraesCS2D01G477400 chr2A 717139608 717143863 4255 True 1620.666667 4477 91.138000 5 4049 3 chr2A.!!$R2 4044
5 TraesCS2D01G477400 chr2A 716895958 716897679 1721 True 1428.000000 1428 81.808000 1333 3052 1 chr2A.!!$R1 1719
6 TraesCS2D01G477400 chr6B 67128057 67128827 770 False 686.000000 686 82.946000 3284 4046 1 chr6B.!!$F2 762
7 TraesCS2D01G477400 chr6B 67320579 67321350 771 False 682.000000 682 82.794000 3284 4047 1 chr6B.!!$F4 763
8 TraesCS2D01G477400 chr6B 67408272 67409029 757 False 671.000000 671 82.876000 3292 4046 1 chr6B.!!$F5 754
9 TraesCS2D01G477400 chr6B 66988840 66989606 766 False 658.000000 658 82.315000 3283 4044 1 chr6B.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 990 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.0 0.00 0.0 0.00 4.37 F
630 992 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.0 0.00 0.0 0.00 3.28 F
1087 1474 0.687427 TGAGGAGGATGACGGCATGA 60.687 55.0 9.52 0.0 34.11 3.07 F
2625 3019 0.108138 GTCTGCGACAGGCTTATGGT 60.108 55.0 4.51 0.0 44.05 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1926 0.654683 GATGCTCCACAATCGACAGC 59.345 55.000 0.0 0.0 0.00 4.40 R
1756 2149 1.202110 GCCGATGAAATGTGCTGTCAG 60.202 52.381 0.0 0.0 0.00 3.51 R
2694 3088 1.506493 CACTCGGCTGATTCATAGGC 58.494 55.000 0.0 0.0 37.37 3.93 R
3900 4339 0.029681 ATCAGGCCCCTACACCAGAT 60.030 55.000 0.0 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 112 3.958860 AGGTCAGCACCCTGTGGC 61.959 66.667 0.00 0.00 45.12 5.01
156 160 0.179215 CGTTAGCTGGCGCTCTTTTG 60.179 55.000 7.64 0.00 45.15 2.44
158 162 0.874390 TTAGCTGGCGCTCTTTTGTG 59.126 50.000 7.64 0.00 45.15 3.33
159 163 1.577328 TAGCTGGCGCTCTTTTGTGC 61.577 55.000 7.64 0.43 45.15 4.57
160 164 3.033184 CTGGCGCTCTTTTGTGCA 58.967 55.556 7.64 0.00 44.39 4.57
218 222 2.936498 GCGGTGCATCAGTAGTGTTATT 59.064 45.455 0.00 0.00 0.00 1.40
219 223 4.116961 GCGGTGCATCAGTAGTGTTATTA 58.883 43.478 0.00 0.00 0.00 0.98
220 224 4.750098 GCGGTGCATCAGTAGTGTTATTAT 59.250 41.667 0.00 0.00 0.00 1.28
235 239 4.871557 TGTTATTATACAGACAACGGTGCC 59.128 41.667 0.00 0.00 0.00 5.01
243 247 2.159627 CAGACAACGGTGCCATTCTTAC 59.840 50.000 0.00 0.00 0.00 2.34
244 248 2.038557 AGACAACGGTGCCATTCTTACT 59.961 45.455 0.00 0.00 0.00 2.24
245 249 3.259876 AGACAACGGTGCCATTCTTACTA 59.740 43.478 0.00 0.00 0.00 1.82
246 250 3.332034 ACAACGGTGCCATTCTTACTAC 58.668 45.455 0.00 0.00 0.00 2.73
247 251 3.007614 ACAACGGTGCCATTCTTACTACT 59.992 43.478 0.00 0.00 0.00 2.57
248 252 3.521947 ACGGTGCCATTCTTACTACTC 57.478 47.619 0.00 0.00 0.00 2.59
249 253 2.167900 ACGGTGCCATTCTTACTACTCC 59.832 50.000 0.00 0.00 0.00 3.85
250 254 2.483188 CGGTGCCATTCTTACTACTCCC 60.483 54.545 0.00 0.00 0.00 4.30
251 255 2.772515 GGTGCCATTCTTACTACTCCCT 59.227 50.000 0.00 0.00 0.00 4.20
252 256 3.181464 GGTGCCATTCTTACTACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
253 257 3.039011 TGCCATTCTTACTACTCCCTCC 58.961 50.000 0.00 0.00 0.00 4.30
254 258 2.036089 GCCATTCTTACTACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
255 259 3.297736 CCATTCTTACTACTCCCTCCGT 58.702 50.000 0.00 0.00 0.00 4.69
256 260 3.705072 CCATTCTTACTACTCCCTCCGTT 59.295 47.826 0.00 0.00 0.00 4.44
257 261 4.202131 CCATTCTTACTACTCCCTCCGTTC 60.202 50.000 0.00 0.00 0.00 3.95
258 262 3.010200 TCTTACTACTCCCTCCGTTCC 57.990 52.381 0.00 0.00 0.00 3.62
259 263 2.579860 TCTTACTACTCCCTCCGTTCCT 59.420 50.000 0.00 0.00 0.00 3.36
260 264 3.782523 TCTTACTACTCCCTCCGTTCCTA 59.217 47.826 0.00 0.00 0.00 2.94
261 265 4.228210 TCTTACTACTCCCTCCGTTCCTAA 59.772 45.833 0.00 0.00 0.00 2.69
262 266 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
263 267 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
264 268 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
265 269 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
266 270 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
267 271 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
268 272 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
269 273 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
270 274 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
271 275 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
272 276 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
273 277 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
274 278 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
275 279 8.202137 CCTCCGTTCCTAAATATAAGTCTTTGA 58.798 37.037 0.00 0.00 0.00 2.69
276 280 9.595823 CTCCGTTCCTAAATATAAGTCTTTGAA 57.404 33.333 0.00 0.00 0.00 2.69
277 281 9.595823 TCCGTTCCTAAATATAAGTCTTTGAAG 57.404 33.333 0.00 0.00 0.00 3.02
278 282 9.595823 CCGTTCCTAAATATAAGTCTTTGAAGA 57.404 33.333 0.00 0.00 0.00 2.87
290 294 9.829507 ATAAGTCTTTGAAGAGATTCCACTATG 57.170 33.333 0.00 0.00 35.32 2.23
291 295 6.648192 AGTCTTTGAAGAGATTCCACTATGG 58.352 40.000 0.00 0.00 35.61 2.74
292 296 6.441924 AGTCTTTGAAGAGATTCCACTATGGA 59.558 38.462 0.00 0.00 39.33 3.41
293 297 6.536941 GTCTTTGAAGAGATTCCACTATGGAC 59.463 42.308 0.00 0.00 40.22 4.02
294 298 8.326861 GTCTTTGAAGAGATTCCACTATGGACC 61.327 44.444 0.00 0.00 40.22 4.46
302 306 2.036387 TCCACTATGGACCACATACGG 58.964 52.381 0.00 0.00 42.67 4.02
303 307 2.036387 CCACTATGGACCACATACGGA 58.964 52.381 0.00 0.00 40.96 4.69
304 308 2.035961 CCACTATGGACCACATACGGAG 59.964 54.545 0.00 0.00 40.96 4.63
305 309 1.687123 ACTATGGACCACATACGGAGC 59.313 52.381 0.00 0.00 41.03 4.70
306 310 1.686587 CTATGGACCACATACGGAGCA 59.313 52.381 0.00 0.00 41.03 4.26
307 311 0.908910 ATGGACCACATACGGAGCAA 59.091 50.000 0.00 0.00 38.26 3.91
308 312 0.687920 TGGACCACATACGGAGCAAA 59.312 50.000 0.00 0.00 0.00 3.68
309 313 1.072489 TGGACCACATACGGAGCAAAA 59.928 47.619 0.00 0.00 0.00 2.44
310 314 2.290641 TGGACCACATACGGAGCAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
311 315 2.097466 GGACCACATACGGAGCAAAATG 59.903 50.000 0.00 0.00 0.00 2.32
312 316 3.006940 GACCACATACGGAGCAAAATGA 58.993 45.455 0.00 0.00 0.00 2.57
313 317 3.009723 ACCACATACGGAGCAAAATGAG 58.990 45.455 0.00 0.00 0.00 2.90
314 318 3.009723 CCACATACGGAGCAAAATGAGT 58.990 45.455 0.00 0.00 0.00 3.41
315 319 3.181507 CCACATACGGAGCAAAATGAGTG 60.182 47.826 0.00 0.00 0.00 3.51
316 320 2.420022 ACATACGGAGCAAAATGAGTGC 59.580 45.455 0.00 0.00 42.55 4.40
317 321 2.177394 TACGGAGCAAAATGAGTGCA 57.823 45.000 0.00 0.00 44.74 4.57
318 322 1.538047 ACGGAGCAAAATGAGTGCAT 58.462 45.000 0.00 0.00 44.74 3.96
319 323 1.470098 ACGGAGCAAAATGAGTGCATC 59.530 47.619 0.00 0.00 44.74 3.91
320 324 1.741706 CGGAGCAAAATGAGTGCATCT 59.258 47.619 0.00 0.00 44.74 2.90
321 325 2.938451 CGGAGCAAAATGAGTGCATCTA 59.062 45.455 0.00 0.00 44.74 1.98
322 326 3.562973 CGGAGCAAAATGAGTGCATCTAT 59.437 43.478 0.00 0.00 44.74 1.98
323 327 4.751600 CGGAGCAAAATGAGTGCATCTATA 59.248 41.667 0.00 0.00 44.74 1.31
324 328 5.333645 CGGAGCAAAATGAGTGCATCTATAC 60.334 44.000 0.00 0.00 44.74 1.47
325 329 5.762218 GGAGCAAAATGAGTGCATCTATACT 59.238 40.000 0.00 0.00 44.74 2.12
326 330 6.073331 GGAGCAAAATGAGTGCATCTATACTC 60.073 42.308 0.00 0.00 44.74 2.59
327 331 6.590068 AGCAAAATGAGTGCATCTATACTCT 58.410 36.000 0.00 0.00 44.74 3.24
328 332 7.730084 AGCAAAATGAGTGCATCTATACTCTA 58.270 34.615 0.00 0.00 44.74 2.43
329 333 8.206867 AGCAAAATGAGTGCATCTATACTCTAA 58.793 33.333 0.00 0.00 44.74 2.10
330 334 8.830580 GCAAAATGAGTGCATCTATACTCTAAA 58.169 33.333 0.00 0.00 42.86 1.85
333 337 8.545229 AATGAGTGCATCTATACTCTAAATGC 57.455 34.615 0.00 0.00 42.86 3.56
338 342 7.008021 TGCATCTATACTCTAAATGCATCCA 57.992 36.000 0.00 0.00 45.55 3.41
339 343 7.452562 TGCATCTATACTCTAAATGCATCCAA 58.547 34.615 0.00 0.00 45.55 3.53
340 344 7.938490 TGCATCTATACTCTAAATGCATCCAAA 59.062 33.333 0.00 0.00 45.55 3.28
341 345 8.954350 GCATCTATACTCTAAATGCATCCAAAT 58.046 33.333 0.00 0.00 41.75 2.32
347 351 7.516198 ACTCTAAATGCATCCAAATACATCC 57.484 36.000 0.00 0.00 0.00 3.51
348 352 6.205464 ACTCTAAATGCATCCAAATACATCCG 59.795 38.462 0.00 0.00 0.00 4.18
349 353 6.061441 TCTAAATGCATCCAAATACATCCGT 58.939 36.000 0.00 0.00 0.00 4.69
350 354 7.220740 TCTAAATGCATCCAAATACATCCGTA 58.779 34.615 0.00 0.00 0.00 4.02
351 355 6.899393 AAATGCATCCAAATACATCCGTAT 57.101 33.333 0.00 0.00 40.15 3.06
352 356 5.885230 ATGCATCCAAATACATCCGTATG 57.115 39.130 0.00 0.00 38.37 2.39
354 358 4.514816 TGCATCCAAATACATCCGTATGTG 59.485 41.667 3.56 0.00 45.99 3.21
355 359 4.754618 GCATCCAAATACATCCGTATGTGA 59.245 41.667 3.56 0.00 43.51 3.58
356 360 5.412594 GCATCCAAATACATCCGTATGTGAT 59.587 40.000 3.56 0.00 43.51 3.06
357 361 6.072508 GCATCCAAATACATCCGTATGTGATT 60.073 38.462 3.56 0.00 43.51 2.57
358 362 7.521529 CATCCAAATACATCCGTATGTGATTC 58.478 38.462 3.56 0.00 43.51 2.52
359 363 6.587273 TCCAAATACATCCGTATGTGATTCA 58.413 36.000 3.56 0.00 43.51 2.57
360 364 7.223584 TCCAAATACATCCGTATGTGATTCAT 58.776 34.615 3.56 0.00 43.51 2.57
361 365 8.371699 TCCAAATACATCCGTATGTGATTCATA 58.628 33.333 3.56 0.00 43.51 2.15
362 366 8.659491 CCAAATACATCCGTATGTGATTCATAG 58.341 37.037 3.56 0.00 43.51 2.23
363 367 9.208022 CAAATACATCCGTATGTGATTCATAGT 57.792 33.333 3.56 0.00 43.51 2.12
364 368 8.763049 AATACATCCGTATGTGATTCATAGTG 57.237 34.615 3.56 0.00 45.99 2.74
365 369 6.405278 ACATCCGTATGTGATTCATAGTGA 57.595 37.500 0.00 0.00 44.79 3.41
366 370 6.816136 ACATCCGTATGTGATTCATAGTGAA 58.184 36.000 0.00 0.00 44.79 3.18
367 371 7.272244 ACATCCGTATGTGATTCATAGTGAAA 58.728 34.615 0.00 0.00 44.79 2.69
368 372 7.933577 ACATCCGTATGTGATTCATAGTGAAAT 59.066 33.333 0.00 0.00 44.79 2.17
369 373 7.946655 TCCGTATGTGATTCATAGTGAAATC 57.053 36.000 0.00 0.00 40.12 2.17
370 374 7.726216 TCCGTATGTGATTCATAGTGAAATCT 58.274 34.615 0.00 0.00 40.12 2.40
371 375 7.867909 TCCGTATGTGATTCATAGTGAAATCTC 59.132 37.037 0.00 0.00 40.12 2.75
372 376 7.869937 CCGTATGTGATTCATAGTGAAATCTCT 59.130 37.037 0.00 0.00 40.12 3.10
373 377 9.899226 CGTATGTGATTCATAGTGAAATCTCTA 57.101 33.333 0.00 0.00 40.12 2.43
377 381 9.942850 TGTGATTCATAGTGAAATCTCTACAAA 57.057 29.630 0.00 0.00 40.12 2.83
399 403 9.379791 ACAAAGACTTATATTTAGAAACGGAGG 57.620 33.333 0.00 0.00 0.00 4.30
400 404 8.827677 CAAAGACTTATATTTAGAAACGGAGGG 58.172 37.037 0.00 0.00 0.00 4.30
401 405 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
402 406 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
403 407 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
404 408 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
405 409 8.858094 ACTTATATTTAGAAACGGAGGGAGTAG 58.142 37.037 0.00 0.00 0.00 2.57
406 410 9.075678 CTTATATTTAGAAACGGAGGGAGTAGA 57.924 37.037 0.00 0.00 0.00 2.59
407 411 9.597681 TTATATTTAGAAACGGAGGGAGTAGAT 57.402 33.333 0.00 0.00 0.00 1.98
408 412 6.809976 ATTTAGAAACGGAGGGAGTAGATT 57.190 37.500 0.00 0.00 0.00 2.40
460 821 1.374125 TCAGCGTCGGATTGTGGTG 60.374 57.895 0.00 0.00 0.00 4.17
462 823 0.740868 CAGCGTCGGATTGTGGTGAT 60.741 55.000 0.00 0.00 31.80 3.06
481 843 4.685628 GTGATGTTAGGTTGCACATTTTGG 59.314 41.667 0.00 0.00 33.62 3.28
487 849 2.691011 AGGTTGCACATTTTGGTACGTT 59.309 40.909 0.00 0.00 0.00 3.99
492 854 2.412325 GCACATTTTGGTACGTTCTCGG 60.412 50.000 0.00 0.00 41.85 4.63
524 886 3.216800 AGGTTTGAACTTAAACGGGGAC 58.783 45.455 0.00 0.00 40.56 4.46
525 887 3.117776 AGGTTTGAACTTAAACGGGGACT 60.118 43.478 0.00 0.00 40.56 3.85
527 889 4.498513 GGTTTGAACTTAAACGGGGACTTG 60.499 45.833 0.00 0.00 40.56 3.16
528 890 3.842007 TGAACTTAAACGGGGACTTGA 57.158 42.857 0.00 0.00 0.00 3.02
534 896 6.610075 ACTTAAACGGGGACTTGAAGTATA 57.390 37.500 0.00 0.00 0.00 1.47
535 897 7.191593 ACTTAAACGGGGACTTGAAGTATAT 57.808 36.000 0.00 0.00 0.00 0.86
538 900 5.803237 AACGGGGACTTGAAGTATATAGG 57.197 43.478 0.00 0.00 0.00 2.57
539 901 5.070823 ACGGGGACTTGAAGTATATAGGA 57.929 43.478 0.00 0.00 0.00 2.94
540 902 5.078256 ACGGGGACTTGAAGTATATAGGAG 58.922 45.833 0.00 0.00 0.00 3.69
542 904 5.047943 CGGGGACTTGAAGTATATAGGAGTG 60.048 48.000 0.00 0.00 0.00 3.51
543 905 5.246429 GGGGACTTGAAGTATATAGGAGTGG 59.754 48.000 0.00 0.00 0.00 4.00
544 906 5.839606 GGGACTTGAAGTATATAGGAGTGGT 59.160 44.000 0.00 0.00 0.00 4.16
545 907 7.008941 GGGACTTGAAGTATATAGGAGTGGTA 58.991 42.308 0.00 0.00 0.00 3.25
546 908 7.674772 GGGACTTGAAGTATATAGGAGTGGTAT 59.325 40.741 0.00 0.00 0.00 2.73
547 909 9.750783 GGACTTGAAGTATATAGGAGTGGTATA 57.249 37.037 0.00 0.00 0.00 1.47
565 927 4.922103 GGTATAATGTAGCGAGCAGGTAAC 59.078 45.833 0.00 0.00 34.24 2.50
566 928 1.922570 AATGTAGCGAGCAGGTAACG 58.077 50.000 0.00 0.00 46.39 3.18
571 933 0.450983 AGCGAGCAGGTAACGAGTAC 59.549 55.000 0.00 0.00 46.39 2.73
602 964 9.462606 AATTTATTTTGGTCCTTCAGTAGTAGG 57.537 33.333 0.00 0.00 33.87 3.18
605 967 4.399483 TTGGTCCTTCAGTAGTAGGAGT 57.601 45.455 0.00 0.00 41.36 3.85
606 968 5.525454 TTGGTCCTTCAGTAGTAGGAGTA 57.475 43.478 0.00 0.00 41.36 2.59
607 969 5.113446 TGGTCCTTCAGTAGTAGGAGTAG 57.887 47.826 0.00 0.00 41.36 2.57
608 970 4.539293 TGGTCCTTCAGTAGTAGGAGTAGT 59.461 45.833 0.00 0.00 41.36 2.73
609 971 5.728253 TGGTCCTTCAGTAGTAGGAGTAGTA 59.272 44.000 0.00 0.00 41.36 1.82
610 972 6.216251 TGGTCCTTCAGTAGTAGGAGTAGTAA 59.784 42.308 0.00 0.00 41.36 2.24
611 973 7.092083 TGGTCCTTCAGTAGTAGGAGTAGTAAT 60.092 40.741 0.00 0.00 41.36 1.89
612 974 7.229106 GGTCCTTCAGTAGTAGGAGTAGTAATG 59.771 44.444 0.00 0.00 41.36 1.90
613 975 7.774625 GTCCTTCAGTAGTAGGAGTAGTAATGT 59.225 40.741 0.00 0.00 41.36 2.71
614 976 8.996655 TCCTTCAGTAGTAGGAGTAGTAATGTA 58.003 37.037 0.00 0.00 36.52 2.29
615 977 9.054922 CCTTCAGTAGTAGGAGTAGTAATGTAC 57.945 40.741 0.00 0.00 34.44 2.90
616 978 9.835389 CTTCAGTAGTAGGAGTAGTAATGTACT 57.165 37.037 0.00 0.00 42.68 2.73
617 979 9.829507 TTCAGTAGTAGGAGTAGTAATGTACTC 57.170 37.037 2.93 2.93 45.70 2.59
624 986 4.459330 GAGTAGTAATGTACTCCCTCCGT 58.541 47.826 0.00 0.00 42.16 4.69
625 987 4.459330 AGTAGTAATGTACTCCCTCCGTC 58.541 47.826 0.00 0.00 40.14 4.79
626 988 2.664015 AGTAATGTACTCCCTCCGTCC 58.336 52.381 0.00 0.00 32.47 4.79
627 989 1.685517 GTAATGTACTCCCTCCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
628 990 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
629 991 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
630 992 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
631 993 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
632 994 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
633 995 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
634 996 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
635 997 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
636 998 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
637 999 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
638 1000 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
639 1001 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
640 1002 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
641 1003 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
642 1004 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
643 1005 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
644 1006 4.700213 CCGTCCCAAAATAAGTGTCTCAAT 59.300 41.667 0.00 0.00 0.00 2.57
645 1007 5.391950 CCGTCCCAAAATAAGTGTCTCAATG 60.392 44.000 0.00 0.00 0.00 2.82
646 1008 5.181245 CGTCCCAAAATAAGTGTCTCAATGT 59.819 40.000 0.00 0.00 0.00 2.71
647 1009 6.612306 GTCCCAAAATAAGTGTCTCAATGTC 58.388 40.000 0.00 0.00 0.00 3.06
648 1010 5.411361 TCCCAAAATAAGTGTCTCAATGTCG 59.589 40.000 0.00 0.00 0.00 4.35
649 1011 5.088739 CCAAAATAAGTGTCTCAATGTCGC 58.911 41.667 0.00 0.00 0.00 5.19
650 1012 5.334802 CCAAAATAAGTGTCTCAATGTCGCA 60.335 40.000 0.00 0.00 0.00 5.10
651 1013 6.317088 CAAAATAAGTGTCTCAATGTCGCAT 58.683 36.000 0.00 0.00 0.00 4.73
652 1014 6.500684 AAATAAGTGTCTCAATGTCGCATT 57.499 33.333 0.09 0.09 0.00 3.56
653 1015 7.609760 AAATAAGTGTCTCAATGTCGCATTA 57.390 32.000 5.03 0.00 0.00 1.90
654 1016 7.609760 AATAAGTGTCTCAATGTCGCATTAA 57.390 32.000 5.03 0.00 0.00 1.40
655 1017 4.928661 AGTGTCTCAATGTCGCATTAAC 57.071 40.909 5.03 5.41 0.00 2.01
656 1018 4.569943 AGTGTCTCAATGTCGCATTAACT 58.430 39.130 5.03 3.13 0.00 2.24
657 1019 4.997395 AGTGTCTCAATGTCGCATTAACTT 59.003 37.500 5.03 0.00 0.00 2.66
658 1020 5.470098 AGTGTCTCAATGTCGCATTAACTTT 59.530 36.000 5.03 0.00 0.00 2.66
659 1021 6.649141 AGTGTCTCAATGTCGCATTAACTTTA 59.351 34.615 5.03 0.00 0.00 1.85
660 1022 6.955963 GTGTCTCAATGTCGCATTAACTTTAG 59.044 38.462 5.03 0.00 0.00 1.85
661 1023 6.649141 TGTCTCAATGTCGCATTAACTTTAGT 59.351 34.615 5.03 0.00 0.00 2.24
662 1024 6.955963 GTCTCAATGTCGCATTAACTTTAGTG 59.044 38.462 5.03 0.00 0.00 2.74
663 1025 5.627172 TCAATGTCGCATTAACTTTAGTGC 58.373 37.500 6.44 6.44 41.32 4.40
664 1026 5.180304 TCAATGTCGCATTAACTTTAGTGCA 59.820 36.000 14.56 0.00 43.87 4.57
665 1027 5.621197 ATGTCGCATTAACTTTAGTGCAA 57.379 34.783 14.56 0.00 43.87 4.08
666 1028 5.425577 TGTCGCATTAACTTTAGTGCAAA 57.574 34.783 14.56 2.19 43.87 3.68
683 1045 5.278604 GTGCAAAGTTGTACTAAAGTTGGG 58.721 41.667 5.17 0.00 40.10 4.12
684 1046 5.066764 GTGCAAAGTTGTACTAAAGTTGGGA 59.933 40.000 5.17 0.00 40.10 4.37
685 1047 5.066764 TGCAAAGTTGTACTAAAGTTGGGAC 59.933 40.000 0.00 0.00 0.00 4.46
686 1048 5.066764 GCAAAGTTGTACTAAAGTTGGGACA 59.933 40.000 0.00 0.00 0.00 4.02
687 1049 6.492254 CAAAGTTGTACTAAAGTTGGGACAC 58.508 40.000 0.00 0.00 39.29 3.67
688 1050 5.625568 AGTTGTACTAAAGTTGGGACACT 57.374 39.130 0.00 0.00 39.29 3.55
689 1051 5.997843 AGTTGTACTAAAGTTGGGACACTT 58.002 37.500 0.00 0.00 39.29 3.16
690 1052 7.128234 AGTTGTACTAAAGTTGGGACACTTA 57.872 36.000 0.00 0.00 39.29 2.24
691 1053 7.742767 AGTTGTACTAAAGTTGGGACACTTAT 58.257 34.615 0.00 0.00 39.29 1.73
692 1054 8.215736 AGTTGTACTAAAGTTGGGACACTTATT 58.784 33.333 0.00 0.00 39.29 1.40
693 1055 8.843262 GTTGTACTAAAGTTGGGACACTTATTT 58.157 33.333 0.00 0.00 39.29 1.40
695 1057 9.715121 TGTACTAAAGTTGGGACACTTATTTAG 57.285 33.333 0.00 0.00 39.29 1.85
696 1058 9.159364 GTACTAAAGTTGGGACACTTATTTAGG 57.841 37.037 0.00 0.00 39.29 2.69
697 1059 7.981142 ACTAAAGTTGGGACACTTATTTAGGA 58.019 34.615 0.00 0.00 39.29 2.94
698 1060 7.881751 ACTAAAGTTGGGACACTTATTTAGGAC 59.118 37.037 0.00 0.00 39.29 3.85
699 1061 5.836024 AGTTGGGACACTTATTTAGGACA 57.164 39.130 0.00 0.00 39.29 4.02
700 1062 5.805728 AGTTGGGACACTTATTTAGGACAG 58.194 41.667 0.00 0.00 39.29 3.51
701 1063 5.546499 AGTTGGGACACTTATTTAGGACAGA 59.454 40.000 0.00 0.00 39.29 3.41
702 1064 5.677319 TGGGACACTTATTTAGGACAGAG 57.323 43.478 0.00 0.00 0.00 3.35
703 1065 4.469945 TGGGACACTTATTTAGGACAGAGG 59.530 45.833 0.00 0.00 0.00 3.69
704 1066 4.141688 GGGACACTTATTTAGGACAGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
705 1067 4.715297 GGACACTTATTTAGGACAGAGGGA 59.285 45.833 0.00 0.00 0.00 4.20
706 1068 5.163395 GGACACTTATTTAGGACAGAGGGAG 60.163 48.000 0.00 0.00 0.00 4.30
707 1069 5.342866 ACACTTATTTAGGACAGAGGGAGT 58.657 41.667 0.00 0.00 0.00 3.85
708 1070 6.500336 ACACTTATTTAGGACAGAGGGAGTA 58.500 40.000 0.00 0.00 0.00 2.59
709 1071 6.608002 ACACTTATTTAGGACAGAGGGAGTAG 59.392 42.308 0.00 0.00 0.00 2.57
710 1072 6.608002 CACTTATTTAGGACAGAGGGAGTAGT 59.392 42.308 0.00 0.00 0.00 2.73
711 1073 7.778853 CACTTATTTAGGACAGAGGGAGTAGTA 59.221 40.741 0.00 0.00 0.00 1.82
712 1074 8.000127 ACTTATTTAGGACAGAGGGAGTAGTAG 59.000 40.741 0.00 0.00 0.00 2.57
713 1075 4.792513 TTAGGACAGAGGGAGTAGTAGG 57.207 50.000 0.00 0.00 0.00 3.18
757 1119 7.965045 TGGGTTTTAAATCGAAAAGTTTGTTG 58.035 30.769 0.00 0.00 0.00 3.33
758 1120 7.064728 TGGGTTTTAAATCGAAAAGTTTGTTGG 59.935 33.333 0.00 0.00 0.00 3.77
762 1124 7.513190 TTAAATCGAAAAGTTTGTTGGTGTG 57.487 32.000 0.00 0.00 0.00 3.82
793 1157 3.062042 CAGTTTTCTTGGGCTGAAATGC 58.938 45.455 0.00 0.00 34.04 3.56
827 1192 6.194967 TCTTGTACTGAACTGAGATGGGATA 58.805 40.000 0.00 0.00 0.00 2.59
889 1254 1.079612 CAGCACGAGCAGGATGACA 60.080 57.895 7.77 0.00 45.49 3.58
911 1276 2.856222 CAAGAAAGTGGAGGCAGAACT 58.144 47.619 0.00 0.00 0.00 3.01
927 1292 0.976641 AACTTGATGGAGCTGACGGA 59.023 50.000 0.00 0.00 0.00 4.69
1055 1433 3.526931 TCTTACTGTGCAGGCAGATAC 57.473 47.619 11.03 0.00 39.62 2.24
1067 1445 1.506493 GCAGATACGGAGCATTCTGG 58.494 55.000 0.00 0.00 36.85 3.86
1081 1468 1.186200 TTCTGGTGAGGAGGATGACG 58.814 55.000 0.00 0.00 0.00 4.35
1087 1474 0.687427 TGAGGAGGATGACGGCATGA 60.687 55.000 9.52 0.00 34.11 3.07
1105 1495 3.507162 TGAAAGTGGAGGCAGAATTCA 57.493 42.857 8.44 0.00 0.00 2.57
1120 1510 0.749454 ATTCATTGGAGCTGACGGGC 60.749 55.000 0.00 0.00 0.00 6.13
1130 1520 1.244019 GCTGACGGGCCACTCAAAAT 61.244 55.000 4.39 0.00 0.00 1.82
1151 1541 2.106338 TCAAGCACCAGATTCAGTCCAA 59.894 45.455 0.00 0.00 0.00 3.53
1236 1626 1.163554 GCCACTTTCTCTTCAGCTGG 58.836 55.000 15.13 0.00 0.00 4.85
1326 1716 2.677508 GGAGGACTCCTGCTTCACT 58.322 57.895 11.09 0.00 46.16 3.41
1390 1780 1.133699 GGGTGGCAGATCATCAATCCA 60.134 52.381 0.00 0.00 34.67 3.41
1393 1783 4.569228 GGGTGGCAGATCATCAATCCATAT 60.569 45.833 0.00 0.00 34.67 1.78
1396 1786 5.123502 GTGGCAGATCATCAATCCATATCAC 59.876 44.000 0.00 0.00 34.67 3.06
1407 1797 6.470278 TCAATCCATATCACCATCAGATGTC 58.530 40.000 9.64 0.00 0.00 3.06
1416 1806 2.291153 ACCATCAGATGTCCCAAACCTG 60.291 50.000 9.64 0.00 0.00 4.00
1417 1807 2.025981 CCATCAGATGTCCCAAACCTGA 60.026 50.000 9.64 0.00 38.12 3.86
1418 1808 3.561960 CCATCAGATGTCCCAAACCTGAA 60.562 47.826 9.64 0.00 37.41 3.02
1464 1857 4.480115 TGAATACTGGGGACGATATGAGT 58.520 43.478 0.00 0.00 0.00 3.41
1533 1926 5.405935 TGATCATACTCCATGGTTATCCG 57.594 43.478 12.58 0.00 35.16 4.18
1534 1927 3.678056 TCATACTCCATGGTTATCCGC 57.322 47.619 12.58 0.00 35.16 5.54
1666 2059 6.072286 TCAGAAGGAAAAGATGAATGTCAAGC 60.072 38.462 0.00 0.00 0.00 4.01
1667 2060 4.691860 AGGAAAAGATGAATGTCAAGCG 57.308 40.909 0.00 0.00 0.00 4.68
1756 2149 2.159462 CCGACGGTAAAGTACCTCTGTC 60.159 54.545 5.48 2.79 46.81 3.51
1791 2184 1.722011 TCGGCGAAGACTGGAAAATC 58.278 50.000 7.35 0.00 0.00 2.17
1793 2186 0.727398 GGCGAAGACTGGAAAATCCG 59.273 55.000 0.00 0.00 40.17 4.18
1800 2193 3.012518 AGACTGGAAAATCCGCAGAATG 58.987 45.455 0.00 0.00 40.17 2.67
1871 2264 1.486310 CATACACTGCAAGGAGGCCTA 59.514 52.381 4.42 0.00 39.30 3.93
1947 2340 7.934665 AGAGATTGGAATCTTGATCAGAAGATG 59.065 37.037 10.07 0.00 45.39 2.90
2015 2408 2.467826 GGCTCAAGGCGATGCTCAC 61.468 63.158 0.00 0.00 42.94 3.51
2023 2416 1.880340 GCGATGCTCACGGAGAAGG 60.880 63.158 5.24 0.00 0.00 3.46
2100 2493 4.654091 AAACAGTGTTGTTGATGAAGGG 57.346 40.909 9.79 0.00 46.54 3.95
2622 3016 1.141881 CCGTCTGCGACAGGCTTAT 59.858 57.895 9.24 0.00 44.05 1.73
2625 3019 0.108138 GTCTGCGACAGGCTTATGGT 60.108 55.000 4.51 0.00 44.05 3.55
2694 3088 5.465724 GGAACTGTTTGGTGAGTACTACAAG 59.534 44.000 0.00 0.00 0.00 3.16
2715 3109 1.414181 CCTATGAATCAGCCGAGTGGT 59.586 52.381 0.00 0.00 37.67 4.16
2727 3121 1.278637 GAGTGGTGCCGTTGTTTCG 59.721 57.895 0.00 0.00 0.00 3.46
2730 3124 2.251371 GGTGCCGTTGTTTCGAGC 59.749 61.111 0.00 0.00 0.00 5.03
2773 3179 2.940158 TGGAAGATTGGGATGAGCATG 58.060 47.619 0.00 0.00 0.00 4.06
2804 3210 3.872182 CAGATGTCTTCAGAGCTTGATGG 59.128 47.826 0.00 0.00 35.27 3.51
2905 3311 3.864686 CGCTTGCGGCTATTGCGT 61.865 61.111 7.16 0.00 41.45 5.24
2949 3355 1.690893 TCTGCAGTTCACTCTGAAGCT 59.309 47.619 14.67 0.00 40.06 3.74
2955 3361 3.252701 CAGTTCACTCTGAAGCTGCATTT 59.747 43.478 0.00 0.00 37.00 2.32
3055 3461 4.800023 AGATTGGATGAGATGAAATGGCA 58.200 39.130 0.00 0.00 0.00 4.92
3077 3483 5.698545 GCAAAGATTCTATAAGCCACTCGAT 59.301 40.000 0.00 0.00 0.00 3.59
3144 3550 5.904941 AGAACTTTTGCATGTTCATGTGAA 58.095 33.333 21.48 6.73 43.38 3.18
3158 3564 6.436218 TGTTCATGTGAAGTTAGTAGCCTAGA 59.564 38.462 0.00 0.00 34.27 2.43
3165 3571 5.955959 TGAAGTTAGTAGCCTAGATCCACAA 59.044 40.000 0.00 0.00 0.00 3.33
3199 3606 8.345565 GTTCAGTTCATGTTTGACTAGATGTTT 58.654 33.333 0.00 0.00 0.00 2.83
3248 3655 0.603439 GCCACAAAACCCCATTGCAG 60.603 55.000 0.00 0.00 0.00 4.41
3249 3656 1.047002 CCACAAAACCCCATTGCAGA 58.953 50.000 0.00 0.00 0.00 4.26
3253 3660 0.681175 AAAACCCCATTGCAGAGCAC 59.319 50.000 0.00 0.00 38.71 4.40
3413 3820 1.144057 GAGTGACGCCCCGATGAAT 59.856 57.895 0.00 0.00 0.00 2.57
3449 3856 2.147150 GACTTTGTCCCAGAGAAGCAC 58.853 52.381 0.00 0.00 0.00 4.40
3475 3882 2.425143 TTCAGATCCTGCCATTCACC 57.575 50.000 0.00 0.00 0.00 4.02
3476 3883 0.178767 TCAGATCCTGCCATTCACCG 59.821 55.000 0.00 0.00 0.00 4.94
3493 3900 1.953138 CGGCGATCATCTCCAGCAC 60.953 63.158 0.00 0.00 0.00 4.40
3642 4050 3.573110 TCAATGTTGATGTGGATGCACAA 59.427 39.130 24.45 7.67 38.69 3.33
3704 4140 2.871182 TAGTGCTAATCCTGCAGTCG 57.129 50.000 13.81 0.00 42.36 4.18
3711 4147 3.738281 GCTAATCCTGCAGTCGTATGTGT 60.738 47.826 13.81 0.00 0.00 3.72
3714 4150 3.226346 TCCTGCAGTCGTATGTGTTAC 57.774 47.619 13.81 0.00 0.00 2.50
3746 4185 1.549203 ATAACCTTTGCACTGCCCAG 58.451 50.000 0.00 0.00 0.00 4.45
3776 4215 1.390565 AGCCTCATGATCTTTGCAGC 58.609 50.000 0.00 0.00 0.00 5.25
3900 4339 6.604396 TGACGATACCATTTCTTAGGTAGTCA 59.396 38.462 8.67 8.67 43.15 3.41
3905 4344 6.240549 ACCATTTCTTAGGTAGTCATCTGG 57.759 41.667 0.00 0.00 36.07 3.86
3996 4438 7.119846 CACTGTAAGAGTAAAATGAAGGAAGGG 59.880 40.741 0.00 0.00 37.43 3.95
4006 4448 9.408648 GTAAAATGAAGGAAGGGAAGATGAATA 57.591 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.676822 TCCTCGGCGAGCTCAACT 60.677 61.111 30.55 0.00 0.00 3.16
22 23 3.452786 CCTCCTCGGCGAGCTCAA 61.453 66.667 30.55 14.22 0.00 3.02
23 24 4.426313 TCCTCCTCGGCGAGCTCA 62.426 66.667 30.55 15.30 0.00 4.26
74 78 1.586564 CTGAACCGATCGCCGACTC 60.587 63.158 10.32 1.62 41.76 3.36
108 112 1.163554 GAGAAGAGCAAAGCCACAGG 58.836 55.000 0.00 0.00 0.00 4.00
144 148 3.033184 CTGCACAAAAGAGCGCCA 58.967 55.556 2.29 0.00 0.00 5.69
176 180 4.479619 GCAAGGTGTTGTTGATCAGAATC 58.520 43.478 0.00 0.00 35.92 2.52
218 222 3.196901 AGAATGGCACCGTTGTCTGTATA 59.803 43.478 0.00 0.00 0.00 1.47
219 223 2.027192 AGAATGGCACCGTTGTCTGTAT 60.027 45.455 0.00 0.00 0.00 2.29
220 224 1.346395 AGAATGGCACCGTTGTCTGTA 59.654 47.619 0.00 0.00 0.00 2.74
235 239 4.202131 GGAACGGAGGGAGTAGTAAGAATG 60.202 50.000 0.00 0.00 0.00 2.67
243 247 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
244 248 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
245 249 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
246 250 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
247 251 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
248 252 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
249 253 8.202137 TCAAAGACTTATATTTAGGAACGGAGG 58.798 37.037 0.00 0.00 0.00 4.30
250 254 9.595823 TTCAAAGACTTATATTTAGGAACGGAG 57.404 33.333 0.00 0.00 0.00 4.63
251 255 9.595823 CTTCAAAGACTTATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
252 256 9.595823 TCTTCAAAGACTTATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
264 268 9.829507 CATAGTGGAATCTCTTCAAAGACTTAT 57.170 33.333 0.00 0.00 32.70 1.73
265 269 8.260818 CCATAGTGGAATCTCTTCAAAGACTTA 58.739 37.037 0.00 0.00 40.96 2.24
266 270 7.038017 TCCATAGTGGAATCTCTTCAAAGACTT 60.038 37.037 0.00 0.00 45.00 3.01
267 271 6.441924 TCCATAGTGGAATCTCTTCAAAGACT 59.558 38.462 0.00 0.00 45.00 3.24
268 272 6.644347 TCCATAGTGGAATCTCTTCAAAGAC 58.356 40.000 0.00 0.00 45.00 3.01
269 273 6.874278 TCCATAGTGGAATCTCTTCAAAGA 57.126 37.500 0.00 0.00 45.00 2.52
282 286 2.036387 CCGTATGTGGTCCATAGTGGA 58.964 52.381 0.00 0.00 45.98 4.02
283 287 2.035961 CTCCGTATGTGGTCCATAGTGG 59.964 54.545 0.00 0.00 36.71 4.00
284 288 2.545952 GCTCCGTATGTGGTCCATAGTG 60.546 54.545 0.00 0.00 36.71 2.74
285 289 1.687123 GCTCCGTATGTGGTCCATAGT 59.313 52.381 0.00 0.00 36.71 2.12
286 290 1.686587 TGCTCCGTATGTGGTCCATAG 59.313 52.381 0.00 0.00 36.71 2.23
287 291 1.783071 TGCTCCGTATGTGGTCCATA 58.217 50.000 0.00 0.00 34.86 2.74
288 292 0.908910 TTGCTCCGTATGTGGTCCAT 59.091 50.000 0.00 0.00 37.58 3.41
289 293 0.687920 TTTGCTCCGTATGTGGTCCA 59.312 50.000 0.00 0.00 0.00 4.02
290 294 1.816074 TTTTGCTCCGTATGTGGTCC 58.184 50.000 0.00 0.00 0.00 4.46
291 295 3.006940 TCATTTTGCTCCGTATGTGGTC 58.993 45.455 0.00 0.00 0.00 4.02
292 296 3.009723 CTCATTTTGCTCCGTATGTGGT 58.990 45.455 0.00 0.00 0.00 4.16
293 297 3.009723 ACTCATTTTGCTCCGTATGTGG 58.990 45.455 0.00 0.00 0.00 4.17
294 298 3.728864 GCACTCATTTTGCTCCGTATGTG 60.729 47.826 0.00 0.00 37.00 3.21
295 299 2.420022 GCACTCATTTTGCTCCGTATGT 59.580 45.455 0.00 0.00 37.00 2.29
296 300 2.419673 TGCACTCATTTTGCTCCGTATG 59.580 45.455 0.00 0.00 40.86 2.39
297 301 2.710377 TGCACTCATTTTGCTCCGTAT 58.290 42.857 0.00 0.00 40.86 3.06
298 302 2.177394 TGCACTCATTTTGCTCCGTA 57.823 45.000 0.00 0.00 40.86 4.02
299 303 1.470098 GATGCACTCATTTTGCTCCGT 59.530 47.619 0.00 0.00 40.86 4.69
300 304 1.741706 AGATGCACTCATTTTGCTCCG 59.258 47.619 0.00 0.00 40.86 4.63
301 305 5.762218 AGTATAGATGCACTCATTTTGCTCC 59.238 40.000 0.00 0.00 40.86 4.70
302 306 6.705381 AGAGTATAGATGCACTCATTTTGCTC 59.295 38.462 0.00 0.00 42.99 4.26
303 307 6.590068 AGAGTATAGATGCACTCATTTTGCT 58.410 36.000 0.00 0.00 42.99 3.91
304 308 6.857777 AGAGTATAGATGCACTCATTTTGC 57.142 37.500 0.00 0.00 42.99 3.68
307 311 8.997323 GCATTTAGAGTATAGATGCACTCATTT 58.003 33.333 13.72 0.00 42.99 2.32
308 312 8.152898 TGCATTTAGAGTATAGATGCACTCATT 58.847 33.333 16.53 0.00 45.62 2.57
309 313 7.674120 TGCATTTAGAGTATAGATGCACTCAT 58.326 34.615 16.53 0.00 45.62 2.90
310 314 7.054491 TGCATTTAGAGTATAGATGCACTCA 57.946 36.000 16.53 0.00 45.62 3.41
315 319 7.912056 TTGGATGCATTTAGAGTATAGATGC 57.088 36.000 12.15 12.15 42.48 3.91
321 325 9.236006 GGATGTATTTGGATGCATTTAGAGTAT 57.764 33.333 0.00 0.00 38.49 2.12
322 326 7.387673 CGGATGTATTTGGATGCATTTAGAGTA 59.612 37.037 0.00 0.00 38.49 2.59
323 327 6.205464 CGGATGTATTTGGATGCATTTAGAGT 59.795 38.462 0.00 0.00 38.49 3.24
324 328 6.205464 ACGGATGTATTTGGATGCATTTAGAG 59.795 38.462 0.00 0.00 38.49 2.43
325 329 6.061441 ACGGATGTATTTGGATGCATTTAGA 58.939 36.000 0.00 0.00 38.49 2.10
326 330 6.317789 ACGGATGTATTTGGATGCATTTAG 57.682 37.500 0.00 0.00 38.49 1.85
327 331 7.446931 ACATACGGATGTATTTGGATGCATTTA 59.553 33.333 12.79 0.00 44.77 1.40
328 332 6.265196 ACATACGGATGTATTTGGATGCATTT 59.735 34.615 12.79 0.00 44.77 2.32
329 333 5.769662 ACATACGGATGTATTTGGATGCATT 59.230 36.000 12.79 0.00 44.77 3.56
330 334 5.181811 CACATACGGATGTATTTGGATGCAT 59.818 40.000 14.23 0.00 44.82 3.96
331 335 4.514816 CACATACGGATGTATTTGGATGCA 59.485 41.667 14.23 0.00 44.82 3.96
332 336 4.754618 TCACATACGGATGTATTTGGATGC 59.245 41.667 14.23 0.00 44.82 3.91
333 337 7.173047 TGAATCACATACGGATGTATTTGGATG 59.827 37.037 14.23 0.00 44.82 3.51
334 338 7.223584 TGAATCACATACGGATGTATTTGGAT 58.776 34.615 14.23 8.81 44.82 3.41
335 339 6.587273 TGAATCACATACGGATGTATTTGGA 58.413 36.000 14.23 6.57 44.82 3.53
336 340 6.859420 TGAATCACATACGGATGTATTTGG 57.141 37.500 14.23 0.19 44.82 3.28
337 341 9.208022 ACTATGAATCACATACGGATGTATTTG 57.792 33.333 14.23 0.70 44.82 2.32
338 342 9.208022 CACTATGAATCACATACGGATGTATTT 57.792 33.333 14.23 9.96 44.82 1.40
339 343 8.585018 TCACTATGAATCACATACGGATGTATT 58.415 33.333 14.23 13.10 44.82 1.89
340 344 8.122472 TCACTATGAATCACATACGGATGTAT 57.878 34.615 14.23 5.54 44.82 2.29
341 345 7.519032 TCACTATGAATCACATACGGATGTA 57.481 36.000 14.23 2.61 44.82 2.29
342 346 6.816136 TTCACTATGAATCACATACGGATGT 58.184 36.000 7.68 7.68 37.89 3.06
343 347 7.713764 TTTCACTATGAATCACATACGGATG 57.286 36.000 5.94 5.94 36.11 3.51
344 348 8.370940 AGATTTCACTATGAATCACATACGGAT 58.629 33.333 0.00 0.00 36.11 4.18
345 349 7.726216 AGATTTCACTATGAATCACATACGGA 58.274 34.615 0.00 0.00 36.11 4.69
346 350 7.869937 AGAGATTTCACTATGAATCACATACGG 59.130 37.037 0.00 0.00 36.11 4.02
347 351 8.809159 AGAGATTTCACTATGAATCACATACG 57.191 34.615 0.00 0.00 36.11 3.06
351 355 9.942850 TTTGTAGAGATTTCACTATGAATCACA 57.057 29.630 0.00 0.00 36.11 3.58
373 377 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
374 378 8.827677 CCCTCCGTTTCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
375 379 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
376 380 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
377 381 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
378 382 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
379 383 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
380 384 9.075678 TCTACTCCCTCCGTTTCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
381 385 9.597681 ATCTACTCCCTCCGTTTCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
382 386 9.597681 AATCTACTCCCTCCGTTTCTAAATATA 57.402 33.333 0.00 0.00 0.00 0.86
383 387 8.493787 AATCTACTCCCTCCGTTTCTAAATAT 57.506 34.615 0.00 0.00 0.00 1.28
384 388 7.783596 AGAATCTACTCCCTCCGTTTCTAAATA 59.216 37.037 0.00 0.00 0.00 1.40
385 389 6.612049 AGAATCTACTCCCTCCGTTTCTAAAT 59.388 38.462 0.00 0.00 0.00 1.40
386 390 5.956563 AGAATCTACTCCCTCCGTTTCTAAA 59.043 40.000 0.00 0.00 0.00 1.85
387 391 5.516984 AGAATCTACTCCCTCCGTTTCTAA 58.483 41.667 0.00 0.00 0.00 2.10
388 392 5.126699 AGAATCTACTCCCTCCGTTTCTA 57.873 43.478 0.00 0.00 0.00 2.10
389 393 3.983821 AGAATCTACTCCCTCCGTTTCT 58.016 45.455 0.00 0.00 0.00 2.52
390 394 4.888823 ACTAGAATCTACTCCCTCCGTTTC 59.111 45.833 0.00 0.00 0.00 2.78
391 395 4.869451 ACTAGAATCTACTCCCTCCGTTT 58.131 43.478 0.00 0.00 0.00 3.60
392 396 4.523168 ACTAGAATCTACTCCCTCCGTT 57.477 45.455 0.00 0.00 0.00 4.44
393 397 4.523168 AACTAGAATCTACTCCCTCCGT 57.477 45.455 0.00 0.00 0.00 4.69
394 398 5.374921 TGTAACTAGAATCTACTCCCTCCG 58.625 45.833 0.00 0.00 0.00 4.63
395 399 7.842887 AATGTAACTAGAATCTACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
396 400 8.697292 ACAAATGTAACTAGAATCTACTCCCTC 58.303 37.037 0.00 0.00 0.00 4.30
397 401 8.478877 CACAAATGTAACTAGAATCTACTCCCT 58.521 37.037 0.00 0.00 0.00 4.20
398 402 8.258708 ACACAAATGTAACTAGAATCTACTCCC 58.741 37.037 0.00 0.00 37.26 4.30
399 403 9.654663 AACACAAATGTAACTAGAATCTACTCC 57.345 33.333 0.00 0.00 38.45 3.85
404 408 9.778741 TCTCAAACACAAATGTAACTAGAATCT 57.221 29.630 0.00 0.00 38.45 2.40
408 412 8.836413 CCTTTCTCAAACACAAATGTAACTAGA 58.164 33.333 0.00 0.00 38.45 2.43
428 782 0.035458 CGCTGACCAGAACCCTTTCT 59.965 55.000 0.47 0.00 43.35 2.52
429 783 0.250338 ACGCTGACCAGAACCCTTTC 60.250 55.000 0.47 0.00 0.00 2.62
460 821 4.881920 ACCAAAATGTGCAACCTAACATC 58.118 39.130 0.00 0.00 35.99 3.06
462 823 4.261238 CGTACCAAAATGTGCAACCTAACA 60.261 41.667 0.00 0.00 34.36 2.41
481 843 2.287373 AGATCATCGACCGAGAACGTAC 59.713 50.000 0.00 0.00 37.88 3.67
487 849 2.932855 ACCTAGATCATCGACCGAGA 57.067 50.000 0.00 0.00 0.00 4.04
492 854 8.381387 GTTTAAGTTCAAACCTAGATCATCGAC 58.619 37.037 0.00 0.00 33.21 4.20
534 896 5.125739 GCTCGCTACATTATACCACTCCTAT 59.874 44.000 0.00 0.00 0.00 2.57
535 897 4.458295 GCTCGCTACATTATACCACTCCTA 59.542 45.833 0.00 0.00 0.00 2.94
538 900 4.230657 CTGCTCGCTACATTATACCACTC 58.769 47.826 0.00 0.00 0.00 3.51
539 901 3.005897 CCTGCTCGCTACATTATACCACT 59.994 47.826 0.00 0.00 0.00 4.00
540 902 3.243771 ACCTGCTCGCTACATTATACCAC 60.244 47.826 0.00 0.00 0.00 4.16
542 904 3.662247 ACCTGCTCGCTACATTATACC 57.338 47.619 0.00 0.00 0.00 2.73
543 905 4.615961 CGTTACCTGCTCGCTACATTATAC 59.384 45.833 0.00 0.00 0.00 1.47
544 906 4.516321 TCGTTACCTGCTCGCTACATTATA 59.484 41.667 0.00 0.00 0.00 0.98
545 907 3.317149 TCGTTACCTGCTCGCTACATTAT 59.683 43.478 0.00 0.00 0.00 1.28
546 908 2.684374 TCGTTACCTGCTCGCTACATTA 59.316 45.455 0.00 0.00 0.00 1.90
547 909 1.475280 TCGTTACCTGCTCGCTACATT 59.525 47.619 0.00 0.00 0.00 2.71
548 910 1.065701 CTCGTTACCTGCTCGCTACAT 59.934 52.381 0.00 0.00 0.00 2.29
565 927 9.326413 AGGACCAAAATAAATTCATAGTACTCG 57.674 33.333 0.00 0.00 0.00 4.18
602 964 4.459330 ACGGAGGGAGTACATTACTACTC 58.541 47.826 0.00 8.16 39.66 2.59
605 967 3.435601 GGGACGGAGGGAGTACATTACTA 60.436 52.174 0.00 0.00 39.59 1.82
606 968 2.664015 GGACGGAGGGAGTACATTACT 58.336 52.381 0.00 0.00 42.86 2.24
607 969 1.685517 GGGACGGAGGGAGTACATTAC 59.314 57.143 0.00 0.00 0.00 1.89
608 970 1.288633 TGGGACGGAGGGAGTACATTA 59.711 52.381 0.00 0.00 0.00 1.90
609 971 0.042131 TGGGACGGAGGGAGTACATT 59.958 55.000 0.00 0.00 0.00 2.71
610 972 0.042131 TTGGGACGGAGGGAGTACAT 59.958 55.000 0.00 0.00 0.00 2.29
611 973 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
612 974 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
613 975 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
614 976 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
615 977 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
616 978 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
617 979 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
618 980 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
619 981 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
620 982 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
621 983 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
622 984 5.181245 ACATTGAGACACTTATTTTGGGACG 59.819 40.000 0.00 0.00 0.00 4.79
623 985 6.575162 ACATTGAGACACTTATTTTGGGAC 57.425 37.500 0.00 0.00 0.00 4.46
624 986 5.411361 CGACATTGAGACACTTATTTTGGGA 59.589 40.000 0.00 0.00 0.00 4.37
625 987 5.631026 CGACATTGAGACACTTATTTTGGG 58.369 41.667 0.00 0.00 0.00 4.12
626 988 5.088739 GCGACATTGAGACACTTATTTTGG 58.911 41.667 0.00 0.00 0.00 3.28
627 989 5.688823 TGCGACATTGAGACACTTATTTTG 58.311 37.500 0.00 0.00 0.00 2.44
628 990 5.940192 TGCGACATTGAGACACTTATTTT 57.060 34.783 0.00 0.00 0.00 1.82
629 991 6.500684 AATGCGACATTGAGACACTTATTT 57.499 33.333 4.59 0.00 0.00 1.40
630 992 7.334421 AGTTAATGCGACATTGAGACACTTATT 59.666 33.333 13.17 0.00 0.00 1.40
631 993 6.818644 AGTTAATGCGACATTGAGACACTTAT 59.181 34.615 13.17 0.00 0.00 1.73
632 994 6.163476 AGTTAATGCGACATTGAGACACTTA 58.837 36.000 13.17 0.00 0.00 2.24
633 995 4.997395 AGTTAATGCGACATTGAGACACTT 59.003 37.500 13.17 0.00 0.00 3.16
634 996 4.569943 AGTTAATGCGACATTGAGACACT 58.430 39.130 13.17 6.44 0.00 3.55
635 997 4.928661 AGTTAATGCGACATTGAGACAC 57.071 40.909 13.17 4.86 0.00 3.67
636 998 5.940192 AAAGTTAATGCGACATTGAGACA 57.060 34.783 13.17 0.00 0.00 3.41
637 999 6.955963 CACTAAAGTTAATGCGACATTGAGAC 59.044 38.462 13.17 9.70 0.00 3.36
638 1000 6.402118 GCACTAAAGTTAATGCGACATTGAGA 60.402 38.462 13.17 0.47 0.00 3.27
639 1001 5.734498 GCACTAAAGTTAATGCGACATTGAG 59.266 40.000 13.17 5.65 0.00 3.02
640 1002 5.180304 TGCACTAAAGTTAATGCGACATTGA 59.820 36.000 13.17 4.65 41.07 2.57
641 1003 5.389778 TGCACTAAAGTTAATGCGACATTG 58.610 37.500 13.17 0.84 41.07 2.82
642 1004 5.621197 TGCACTAAAGTTAATGCGACATT 57.379 34.783 9.46 9.46 41.07 2.71
643 1005 5.621197 TTGCACTAAAGTTAATGCGACAT 57.379 34.783 0.64 0.00 41.07 3.06
644 1006 5.425577 TTTGCACTAAAGTTAATGCGACA 57.574 34.783 0.64 0.00 41.07 4.35
645 1007 5.975138 CTTTGCACTAAAGTTAATGCGAC 57.025 39.130 0.64 0.00 40.71 5.19
656 1018 8.185505 CCAACTTTAGTACAACTTTGCACTAAA 58.814 33.333 19.50 19.50 46.64 1.85
657 1019 7.201750 CCCAACTTTAGTACAACTTTGCACTAA 60.202 37.037 9.74 9.74 42.33 2.24
658 1020 6.261381 CCCAACTTTAGTACAACTTTGCACTA 59.739 38.462 0.00 0.00 36.29 2.74
659 1021 5.067283 CCCAACTTTAGTACAACTTTGCACT 59.933 40.000 0.00 0.65 38.32 4.40
660 1022 5.066764 TCCCAACTTTAGTACAACTTTGCAC 59.933 40.000 0.00 0.00 0.00 4.57
661 1023 5.066764 GTCCCAACTTTAGTACAACTTTGCA 59.933 40.000 0.00 0.00 0.00 4.08
662 1024 5.066764 TGTCCCAACTTTAGTACAACTTTGC 59.933 40.000 0.00 0.00 0.00 3.68
663 1025 6.317893 AGTGTCCCAACTTTAGTACAACTTTG 59.682 38.462 0.00 0.00 0.00 2.77
664 1026 6.420638 AGTGTCCCAACTTTAGTACAACTTT 58.579 36.000 0.00 0.00 0.00 2.66
665 1027 5.997843 AGTGTCCCAACTTTAGTACAACTT 58.002 37.500 0.00 0.00 0.00 2.66
666 1028 5.625568 AGTGTCCCAACTTTAGTACAACT 57.374 39.130 0.00 0.00 0.00 3.16
667 1029 7.974482 ATAAGTGTCCCAACTTTAGTACAAC 57.026 36.000 0.00 0.00 40.77 3.32
668 1030 8.983702 AAATAAGTGTCCCAACTTTAGTACAA 57.016 30.769 0.00 0.00 40.77 2.41
669 1031 9.715121 CTAAATAAGTGTCCCAACTTTAGTACA 57.285 33.333 0.00 0.00 40.77 2.90
670 1032 9.159364 CCTAAATAAGTGTCCCAACTTTAGTAC 57.841 37.037 0.00 0.00 40.77 2.73
671 1033 9.103582 TCCTAAATAAGTGTCCCAACTTTAGTA 57.896 33.333 0.00 0.00 40.77 1.82
672 1034 7.881751 GTCCTAAATAAGTGTCCCAACTTTAGT 59.118 37.037 0.00 0.00 40.77 2.24
673 1035 7.881232 TGTCCTAAATAAGTGTCCCAACTTTAG 59.119 37.037 0.00 0.00 40.77 1.85
674 1036 7.747690 TGTCCTAAATAAGTGTCCCAACTTTA 58.252 34.615 0.00 0.00 40.77 1.85
675 1037 6.607019 TGTCCTAAATAAGTGTCCCAACTTT 58.393 36.000 0.00 0.00 40.77 2.66
676 1038 6.043938 TCTGTCCTAAATAAGTGTCCCAACTT 59.956 38.462 0.00 0.00 42.89 2.66
677 1039 5.546499 TCTGTCCTAAATAAGTGTCCCAACT 59.454 40.000 0.00 0.00 0.00 3.16
678 1040 5.801380 TCTGTCCTAAATAAGTGTCCCAAC 58.199 41.667 0.00 0.00 0.00 3.77
679 1041 5.045869 CCTCTGTCCTAAATAAGTGTCCCAA 60.046 44.000 0.00 0.00 0.00 4.12
680 1042 4.469945 CCTCTGTCCTAAATAAGTGTCCCA 59.530 45.833 0.00 0.00 0.00 4.37
681 1043 4.141688 CCCTCTGTCCTAAATAAGTGTCCC 60.142 50.000 0.00 0.00 0.00 4.46
682 1044 4.715297 TCCCTCTGTCCTAAATAAGTGTCC 59.285 45.833 0.00 0.00 0.00 4.02
683 1045 5.422650 ACTCCCTCTGTCCTAAATAAGTGTC 59.577 44.000 0.00 0.00 0.00 3.67
684 1046 5.342866 ACTCCCTCTGTCCTAAATAAGTGT 58.657 41.667 0.00 0.00 0.00 3.55
685 1047 5.941555 ACTCCCTCTGTCCTAAATAAGTG 57.058 43.478 0.00 0.00 0.00 3.16
686 1048 6.743788 ACTACTCCCTCTGTCCTAAATAAGT 58.256 40.000 0.00 0.00 0.00 2.24
687 1049 7.449086 CCTACTACTCCCTCTGTCCTAAATAAG 59.551 44.444 0.00 0.00 0.00 1.73
688 1050 7.091628 ACCTACTACTCCCTCTGTCCTAAATAA 60.092 40.741 0.00 0.00 0.00 1.40
689 1051 6.392245 ACCTACTACTCCCTCTGTCCTAAATA 59.608 42.308 0.00 0.00 0.00 1.40
690 1052 5.196165 ACCTACTACTCCCTCTGTCCTAAAT 59.804 44.000 0.00 0.00 0.00 1.40
691 1053 4.543337 ACCTACTACTCCCTCTGTCCTAAA 59.457 45.833 0.00 0.00 0.00 1.85
692 1054 4.117632 ACCTACTACTCCCTCTGTCCTAA 58.882 47.826 0.00 0.00 0.00 2.69
693 1055 3.745489 ACCTACTACTCCCTCTGTCCTA 58.255 50.000 0.00 0.00 0.00 2.94
694 1056 2.575713 ACCTACTACTCCCTCTGTCCT 58.424 52.381 0.00 0.00 0.00 3.85
695 1057 3.385314 AACCTACTACTCCCTCTGTCC 57.615 52.381 0.00 0.00 0.00 4.02
696 1058 5.741962 AAAAACCTACTACTCCCTCTGTC 57.258 43.478 0.00 0.00 0.00 3.51
737 1099 7.412020 GCACACCAACAAACTTTTCGATTTAAA 60.412 33.333 0.00 0.00 0.00 1.52
757 1119 1.519408 AACTGTTGTATCCGCACACC 58.481 50.000 0.00 0.00 0.00 4.16
758 1120 3.250040 AGAAAACTGTTGTATCCGCACAC 59.750 43.478 0.00 0.00 0.00 3.82
762 1124 3.365969 CCCAAGAAAACTGTTGTATCCGC 60.366 47.826 0.00 0.00 0.00 5.54
793 1157 5.629849 CAGTTCAGTACAAGAGAAGTAACCG 59.370 44.000 0.00 0.00 0.00 4.44
827 1192 8.686334 CCATGGCTACACAGTAAAGAAAATAAT 58.314 33.333 0.00 0.00 0.00 1.28
889 1254 0.767375 TCTGCCTCCACTTTCTTGCT 59.233 50.000 0.00 0.00 0.00 3.91
911 1276 1.194218 TGATCCGTCAGCTCCATCAA 58.806 50.000 0.00 0.00 0.00 2.57
927 1292 1.539388 TGGCGCTCGTTTTTGAATGAT 59.461 42.857 7.64 0.00 0.00 2.45
998 1363 5.376625 TCAGTACAAGAAGAAGCCACATTT 58.623 37.500 0.00 0.00 0.00 2.32
1055 1433 0.179089 CTCCTCACCAGAATGCTCCG 60.179 60.000 0.00 0.00 31.97 4.63
1067 1445 0.531532 CATGCCGTCATCCTCCTCAC 60.532 60.000 0.00 0.00 0.00 3.51
1081 1468 0.322816 TCTGCCTCCACTTTCATGCC 60.323 55.000 0.00 0.00 0.00 4.40
1087 1474 3.512724 CCAATGAATTCTGCCTCCACTTT 59.487 43.478 7.05 0.00 0.00 2.66
1105 1495 3.329889 TGGCCCGTCAGCTCCAAT 61.330 61.111 0.00 0.00 0.00 3.16
1120 1510 2.886523 TCTGGTGCTTGATTTTGAGTGG 59.113 45.455 0.00 0.00 0.00 4.00
1130 1520 1.699083 TGGACTGAATCTGGTGCTTGA 59.301 47.619 0.00 0.00 0.00 3.02
1151 1541 1.280421 GCTCAAACTCATCCCAGACCT 59.720 52.381 0.00 0.00 0.00 3.85
1236 1626 1.846541 GCAGACAGCTATCTCCGTTC 58.153 55.000 0.00 0.00 41.15 3.95
1309 1699 1.261480 TCAGTGAAGCAGGAGTCCTC 58.739 55.000 9.36 4.58 0.00 3.71
1326 1716 0.538584 CACTGGAGCTGCTACCATCA 59.461 55.000 9.87 0.00 35.54 3.07
1390 1780 5.380043 GTTTGGGACATCTGATGGTGATAT 58.620 41.667 20.83 0.00 39.30 1.63
1393 1783 2.290896 GGTTTGGGACATCTGATGGTGA 60.291 50.000 20.83 0.36 39.30 4.02
1396 1786 2.025981 TCAGGTTTGGGACATCTGATGG 60.026 50.000 20.83 4.37 39.30 3.51
1407 1797 4.207165 TCTGTTTCTTCTTCAGGTTTGGG 58.793 43.478 0.00 0.00 0.00 4.12
1416 1806 6.463360 AGATGAGGTCTTCTGTTTCTTCTTC 58.537 40.000 0.00 0.00 31.47 2.87
1417 1807 6.432403 AGATGAGGTCTTCTGTTTCTTCTT 57.568 37.500 0.00 0.00 31.47 2.52
1418 1808 7.398618 TCATAGATGAGGTCTTCTGTTTCTTCT 59.601 37.037 5.80 0.00 38.42 2.85
1464 1857 1.108727 CCTGACCAAACTTGCTGGCA 61.109 55.000 0.00 0.00 37.48 4.92
1533 1926 0.654683 GATGCTCCACAATCGACAGC 59.345 55.000 0.00 0.00 0.00 4.40
1534 1927 2.014335 TGATGCTCCACAATCGACAG 57.986 50.000 0.00 0.00 0.00 3.51
1666 2059 3.422655 GGAAGGTAAGCGCAATTTTACG 58.577 45.455 11.47 0.00 31.98 3.18
1667 2060 3.422655 CGGAAGGTAAGCGCAATTTTAC 58.577 45.455 11.47 9.53 0.00 2.01
1756 2149 1.202110 GCCGATGAAATGTGCTGTCAG 60.202 52.381 0.00 0.00 0.00 3.51
1791 2184 5.679906 CCGAACTTTATTATCATTCTGCGG 58.320 41.667 0.00 0.00 0.00 5.69
1793 2186 6.060028 TGCCGAACTTTATTATCATTCTGC 57.940 37.500 0.00 0.00 32.22 4.26
1800 2193 7.803189 CACCAATACATGCCGAACTTTATTATC 59.197 37.037 0.00 0.00 0.00 1.75
1947 2340 1.534595 CCAACTGAAGTCAAGCTCAGC 59.465 52.381 0.00 0.00 33.85 4.26
2100 2493 7.041508 CCAATAAGGAGAAGTATGTCTGATTGC 60.042 40.741 0.00 0.00 41.22 3.56
2622 3016 4.383861 CTCGCTGAGCCTGCACCA 62.384 66.667 0.00 0.00 0.00 4.17
2676 3070 4.004196 AGGCTTGTAGTACTCACCAAAC 57.996 45.455 0.00 0.00 0.00 2.93
2679 3073 4.606210 TCATAGGCTTGTAGTACTCACCA 58.394 43.478 0.00 0.00 0.00 4.17
2685 3079 4.991687 GGCTGATTCATAGGCTTGTAGTAC 59.008 45.833 0.00 0.00 37.70 2.73
2694 3088 1.506493 CACTCGGCTGATTCATAGGC 58.494 55.000 0.00 0.00 37.37 3.93
2715 3109 1.522806 ACTGCTCGAAACAACGGCA 60.523 52.632 0.00 0.00 37.65 5.69
2727 3121 5.526479 TGAATCTTTATCATCTGCACTGCTC 59.474 40.000 1.98 0.00 0.00 4.26
2730 3124 7.012989 TCCAATGAATCTTTATCATCTGCACTG 59.987 37.037 0.00 0.00 36.53 3.66
2773 3179 5.676079 GCTCTGAAGACATCTGACTACTGAC 60.676 48.000 0.00 0.00 33.08 3.51
2804 3210 2.909292 TAGGCCCTCCCCAAGGTAGC 62.909 65.000 0.00 0.00 44.56 3.58
2905 3311 3.716195 CATGGCCAGGACGTCCCA 61.716 66.667 30.82 21.17 37.41 4.37
2934 3340 2.855209 ATGCAGCTTCAGAGTGAACT 57.145 45.000 0.00 0.00 32.21 3.01
3055 3461 5.698545 GCATCGAGTGGCTTATAGAATCTTT 59.301 40.000 0.00 0.00 0.00 2.52
3077 3483 5.335976 CGCTACTGGATCTATGATAGTTGCA 60.336 44.000 13.11 4.94 39.11 4.08
3144 3550 7.233757 CCTAATTGTGGATCTAGGCTACTAACT 59.766 40.741 0.00 0.00 0.00 2.24
3158 3564 4.307032 ACTGAACAGCCTAATTGTGGAT 57.693 40.909 1.46 0.00 0.00 3.41
3165 3571 5.769662 TCAAACATGAACTGAACAGCCTAAT 59.230 36.000 0.00 0.00 0.00 1.73
3227 3634 1.767654 GCAATGGGGTTTTGTGGCCT 61.768 55.000 3.32 0.00 0.00 5.19
3413 3820 5.234752 ACAAAGTCAACACTATCGCATACA 58.765 37.500 0.00 0.00 30.14 2.29
3449 3856 2.333069 TGGCAGGATCTGAATAGGGAG 58.667 52.381 0.00 0.00 32.44 4.30
3475 3882 1.953138 GTGCTGGAGATGATCGCCG 60.953 63.158 10.62 6.69 39.36 6.46
3476 3883 1.953138 CGTGCTGGAGATGATCGCC 60.953 63.158 8.37 8.37 36.83 5.54
3680 4116 4.446371 ACTGCAGGATTAGCACTATCAAC 58.554 43.478 19.93 0.00 37.02 3.18
3684 4120 2.695666 ACGACTGCAGGATTAGCACTAT 59.304 45.455 19.93 0.00 37.02 2.12
3704 4140 5.744666 AACACACCAACTGTAACACATAC 57.255 39.130 0.00 0.00 34.92 2.39
3711 4147 7.468906 GCAAAGGTTATAACACACCAACTGTAA 60.469 37.037 17.16 0.00 35.25 2.41
3714 4150 5.219633 GCAAAGGTTATAACACACCAACTG 58.780 41.667 17.16 4.25 35.25 3.16
3746 4185 1.026718 CATGAGGCTTTGGGACGACC 61.027 60.000 0.00 0.00 40.81 4.79
3776 4215 0.943359 GCTTCGGATCATCTCCTGCG 60.943 60.000 0.00 0.00 42.47 5.18
3900 4339 0.029681 ATCAGGCCCCTACACCAGAT 60.030 55.000 0.00 0.00 0.00 2.90
3905 4344 7.364497 GGTTATATACTAATCAGGCCCCTACAC 60.364 44.444 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.