Multiple sequence alignment - TraesCS2D01G477100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G477100 chr2D 100.000 7923 0 0 1 7923 579198019 579190097 0.000000e+00 14632.0
1 TraesCS2D01G477100 chr2D 93.182 44 3 0 7235 7278 290737586 290737629 1.850000e-06 65.8
2 TraesCS2D01G477100 chr2A 95.796 3687 110 22 2769 6438 716905152 716901494 0.000000e+00 5908.0
3 TraesCS2D01G477100 chr2A 92.330 2047 103 22 733 2763 716907655 716905647 0.000000e+00 2861.0
4 TraesCS2D01G477100 chr2A 89.933 745 36 10 7200 7923 716900727 716900001 0.000000e+00 924.0
5 TraesCS2D01G477100 chr2A 91.811 635 26 13 6581 7200 716901416 716900793 0.000000e+00 861.0
6 TraesCS2D01G477100 chr2A 94.130 477 25 3 3 477 424165485 424165960 0.000000e+00 723.0
7 TraesCS2D01G477100 chr2A 94.130 477 25 3 3 477 455681031 455680556 0.000000e+00 723.0
8 TraesCS2D01G477100 chr2A 91.489 47 4 0 7235 7281 315039431 315039385 1.850000e-06 65.8
9 TraesCS2D01G477100 chr2B 96.008 2981 86 18 3479 6439 696359660 696356693 0.000000e+00 4815.0
10 TraesCS2D01G477100 chr2B 91.654 1294 59 19 752 2032 696362991 696361734 0.000000e+00 1746.0
11 TraesCS2D01G477100 chr2B 95.634 733 23 3 2031 2763 696361652 696360929 0.000000e+00 1168.0
12 TraesCS2D01G477100 chr2B 94.168 703 27 6 2769 3462 696360429 696359732 0.000000e+00 1059.0
13 TraesCS2D01G477100 chr2B 96.206 369 7 4 6581 6946 696356593 696356229 1.470000e-166 597.0
14 TraesCS2D01G477100 chr2B 90.491 326 25 3 7604 7923 696355500 696355175 7.350000e-115 425.0
15 TraesCS2D01G477100 chr2B 96.124 258 7 2 6944 7200 696356099 696355844 1.230000e-112 418.0
16 TraesCS2D01G477100 chr2B 86.873 259 18 4 7200 7443 696355758 696355501 7.830000e-70 276.0
17 TraesCS2D01G477100 chr2B 84.298 121 11 2 535 647 696363511 696363391 2.340000e-20 111.0
18 TraesCS2D01G477100 chr2B 92.188 64 1 4 3909 3972 679652294 679652353 3.940000e-13 87.9
19 TraesCS2D01G477100 chr2B 93.182 44 3 0 7235 7278 340592685 340592728 1.850000e-06 65.8
20 TraesCS2D01G477100 chr4D 94.215 484 23 3 3 482 397076504 397076022 0.000000e+00 734.0
21 TraesCS2D01G477100 chr4A 94.340 477 24 3 3 477 548654895 548655370 0.000000e+00 728.0
22 TraesCS2D01G477100 chr4A 94.828 58 0 3 3913 3969 625489583 625489528 3.940000e-13 87.9
23 TraesCS2D01G477100 chr7A 94.118 476 26 2 3 477 265505912 265505438 0.000000e+00 723.0
24 TraesCS2D01G477100 chr7A 92.708 96 2 3 6427 6520 686783202 686783294 4.990000e-27 134.0
25 TraesCS2D01G477100 chr7A 88.785 107 10 1 6429 6533 467851915 467851809 6.450000e-26 130.0
26 TraesCS2D01G477100 chr7A 98.113 53 1 0 3920 3972 215930419 215930471 8.470000e-15 93.5
27 TraesCS2D01G477100 chr7A 79.231 130 19 8 7348 7474 637564121 637564245 5.090000e-12 84.2
28 TraesCS2D01G477100 chr7A 84.286 70 8 3 7240 7309 92881518 92881452 1.850000e-06 65.8
29 TraesCS2D01G477100 chr7A 84.286 70 8 3 7240 7309 92883220 92883154 1.850000e-06 65.8
30 TraesCS2D01G477100 chr7A 84.286 70 8 3 7240 7309 92885101 92885035 1.850000e-06 65.8
31 TraesCS2D01G477100 chr6B 94.130 477 25 3 3 477 84825770 84826245 0.000000e+00 723.0
32 TraesCS2D01G477100 chr6B 87.273 165 16 5 3566 3725 92578373 92578537 4.880000e-42 183.0
33 TraesCS2D01G477100 chr6B 79.798 99 19 1 2766 2864 293512430 293512333 3.970000e-08 71.3
34 TraesCS2D01G477100 chr1A 94.130 477 25 3 3 477 479866853 479867328 0.000000e+00 723.0
35 TraesCS2D01G477100 chr1A 95.082 61 2 1 3917 3976 454493547 454493607 2.350000e-15 95.3
36 TraesCS2D01G477100 chr1A 89.062 64 5 2 646 708 516785946 516785884 2.370000e-10 78.7
37 TraesCS2D01G477100 chr6A 93.568 482 29 2 3 483 121928263 121928743 0.000000e+00 717.0
38 TraesCS2D01G477100 chr6A 91.089 101 5 4 6431 6527 83436850 83436950 4.990000e-27 134.0
39 TraesCS2D01G477100 chr6A 88.889 63 7 0 646 708 396052907 396052969 2.370000e-10 78.7
40 TraesCS2D01G477100 chr3A 93.568 482 29 2 3 483 13156790 13156310 0.000000e+00 717.0
41 TraesCS2D01G477100 chr7B 87.898 157 15 4 3572 3725 665242213 665242058 1.760000e-41 182.0
42 TraesCS2D01G477100 chr3B 90.441 136 10 3 3572 3705 76128966 76128832 8.170000e-40 176.0
43 TraesCS2D01G477100 chr5D 92.784 97 2 4 6434 6526 431293826 431293731 1.390000e-27 135.0
44 TraesCS2D01G477100 chr5D 93.478 92 3 2 6432 6521 109535629 109535539 4.990000e-27 134.0
45 TraesCS2D01G477100 chr5D 93.478 92 3 2 6432 6521 112843015 112842925 4.990000e-27 134.0
46 TraesCS2D01G477100 chr5D 92.473 93 5 1 6438 6528 294640319 294640227 1.790000e-26 132.0
47 TraesCS2D01G477100 chr1D 92.632 95 4 2 6438 6529 337065189 337065283 4.990000e-27 134.0
48 TraesCS2D01G477100 chr1D 90.164 61 4 2 649 708 334113574 334113515 2.370000e-10 78.7
49 TraesCS2D01G477100 chr1D 90.164 61 4 2 649 708 334163401 334163342 2.370000e-10 78.7
50 TraesCS2D01G477100 chr5A 90.196 102 6 3 6435 6534 505609683 505609584 6.450000e-26 130.0
51 TraesCS2D01G477100 chr5A 92.063 63 4 1 646 708 148050786 148050847 3.940000e-13 87.9
52 TraesCS2D01G477100 chr5A 91.667 60 4 1 649 708 414776102 414776044 1.830000e-11 82.4
53 TraesCS2D01G477100 chr5A 82.955 88 14 1 2760 2847 623663396 623663310 2.370000e-10 78.7
54 TraesCS2D01G477100 chr6D 80.303 132 24 2 7344 7474 462221585 462221455 1.820000e-16 99.0
55 TraesCS2D01G477100 chr6D 91.667 60 4 1 649 708 467802360 467802302 1.830000e-11 82.4
56 TraesCS2D01G477100 chr6D 100.000 28 0 0 7239 7266 42547736 42547709 1.400000e-02 52.8
57 TraesCS2D01G477100 chrUn 98.077 52 1 0 3918 3969 271622063 271622114 3.040000e-14 91.6
58 TraesCS2D01G477100 chrUn 98.077 52 1 0 3918 3969 271630186 271630237 3.040000e-14 91.6
59 TraesCS2D01G477100 chrUn 90.164 61 4 2 649 708 87837733 87837674 2.370000e-10 78.7
60 TraesCS2D01G477100 chrUn 90.164 61 4 2 649 708 124823457 124823398 2.370000e-10 78.7
61 TraesCS2D01G477100 chr7D 96.429 56 1 1 3921 3976 616168671 616168617 3.040000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G477100 chr2D 579190097 579198019 7922 True 14632.000000 14632 100.0000 1 7923 1 chr2D.!!$R1 7922
1 TraesCS2D01G477100 chr2A 716900001 716907655 7654 True 2638.500000 5908 92.4675 733 7923 4 chr2A.!!$R3 7190
2 TraesCS2D01G477100 chr2B 696355175 696363511 8336 True 1179.444444 4815 92.3840 535 7923 9 chr2B.!!$R1 7388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 487 0.032130 GAACGCACAGAGTGAGGTCA 59.968 55.000 12.91 0.0 46.43 4.02 F
487 488 0.249489 AACGCACAGAGTGAGGTCAC 60.249 55.000 1.60 1.6 46.77 3.67 F
919 1227 0.254638 TCTCCCCTCCCCTCTTCCTA 60.255 60.000 0.00 0.0 0.00 2.94 F
1271 1581 0.321564 TCATTTCCGCCTGGTGTGAG 60.322 55.000 6.49 0.0 36.30 3.51 F
1273 1583 0.606401 ATTTCCGCCTGGTGTGAGTG 60.606 55.000 6.49 0.0 36.30 3.51 F
2765 3174 0.971386 CTTGCCCAATTTGCTGAGGT 59.029 50.000 0.00 0.0 0.00 3.85 F
3727 4695 0.247460 TCATCAACCAGACCTCGCTG 59.753 55.000 0.00 0.0 35.66 5.18 F
5178 6157 0.839277 TATATGCCACTGCCACTGCT 59.161 50.000 0.00 0.0 38.71 4.24 F
5184 6163 1.538047 CCACTGCCACTGCTATGTTT 58.462 50.000 0.00 0.0 38.71 2.83 F
5299 6279 2.310538 ACAGCCACTTTTCTCTTTGGG 58.689 47.619 0.00 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1400 1710 0.037232 CAACTGAAGGAGGGACCGAC 60.037 60.000 0.00 0.0 44.74 4.79 R
1409 1725 1.070134 CGACCAACTCCAACTGAAGGA 59.930 52.381 0.00 0.0 0.00 3.36 R
1888 2206 1.200020 CTAACCAAGCAGAAAAGGGCG 59.800 52.381 0.00 0.0 34.54 6.13 R
2296 2705 1.429930 TGCTCCACCACCTCTACAAA 58.570 50.000 0.00 0.0 0.00 2.83 R
2998 3902 3.631686 CGTGGCAAATGATCAAATCCCTA 59.368 43.478 0.00 0.0 0.00 3.53 R
4522 5496 2.095461 GCTTCCTCAAAATCTGACCCC 58.905 52.381 0.00 0.0 0.00 4.95 R
5299 6279 0.248843 CTGAGGTCACAGAGAAGCCC 59.751 60.000 0.00 0.0 39.94 5.19 R
6576 7566 1.284198 ACGGGCAGTACTCTTCTAGGA 59.716 52.381 0.00 0.0 0.00 2.94 R
6577 7567 1.765230 ACGGGCAGTACTCTTCTAGG 58.235 55.000 0.00 0.0 0.00 3.02 R
7296 8564 0.712380 ACAGGGCCCCATCAATCTTT 59.288 50.000 21.43 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.524511 GGCCGAAAAATTGAATGGTTAAC 57.475 39.130 0.00 0.00 0.00 2.01
23 24 4.390603 GGCCGAAAAATTGAATGGTTAACC 59.609 41.667 18.27 18.27 0.00 2.85
24 25 4.090786 GCCGAAAAATTGAATGGTTAACCG 59.909 41.667 19.65 2.93 39.43 4.44
25 26 5.462405 CCGAAAAATTGAATGGTTAACCGA 58.538 37.500 19.65 9.43 39.43 4.69
26 27 5.921408 CCGAAAAATTGAATGGTTAACCGAA 59.079 36.000 19.65 9.90 39.43 4.30
27 28 6.588373 CCGAAAAATTGAATGGTTAACCGAAT 59.412 34.615 19.65 11.61 39.43 3.34
28 29 7.755822 CCGAAAAATTGAATGGTTAACCGAATA 59.244 33.333 19.65 2.32 39.43 1.75
29 30 9.130312 CGAAAAATTGAATGGTTAACCGAATAA 57.870 29.630 19.65 12.34 39.43 1.40
32 33 8.766000 AAATTGAATGGTTAACCGAATAAACC 57.234 30.769 19.65 0.00 42.49 3.27
33 34 5.548706 TGAATGGTTAACCGAATAAACCG 57.451 39.130 19.65 0.00 44.62 4.44
34 35 5.243981 TGAATGGTTAACCGAATAAACCGA 58.756 37.500 19.65 0.00 44.62 4.69
35 36 5.704515 TGAATGGTTAACCGAATAAACCGAA 59.295 36.000 19.65 0.00 44.62 4.30
36 37 5.806366 ATGGTTAACCGAATAAACCGAAG 57.194 39.130 19.65 0.00 44.62 3.79
37 38 4.640364 TGGTTAACCGAATAAACCGAAGT 58.360 39.130 19.65 0.00 44.62 3.01
38 39 5.788450 TGGTTAACCGAATAAACCGAAGTA 58.212 37.500 19.65 0.00 44.62 2.24
39 40 6.226787 TGGTTAACCGAATAAACCGAAGTAA 58.773 36.000 19.65 0.00 44.62 2.24
40 41 6.708054 TGGTTAACCGAATAAACCGAAGTAAA 59.292 34.615 19.65 0.00 44.62 2.01
41 42 7.227512 TGGTTAACCGAATAAACCGAAGTAAAA 59.772 33.333 19.65 0.00 44.62 1.52
42 43 8.073167 GGTTAACCGAATAAACCGAAGTAAAAA 58.927 33.333 9.34 0.00 33.85 1.94
43 44 9.611284 GTTAACCGAATAAACCGAAGTAAAAAT 57.389 29.630 0.00 0.00 0.00 1.82
79 80 9.739276 TTTCTTGAGATGAACAACCATATAAGT 57.261 29.630 0.00 0.00 0.00 2.24
80 81 9.739276 TTCTTGAGATGAACAACCATATAAGTT 57.261 29.630 0.00 0.00 0.00 2.66
102 103 8.225603 AGTTGTCATTTTTCTTGTACATGAGT 57.774 30.769 10.92 0.00 0.00 3.41
103 104 8.345565 AGTTGTCATTTTTCTTGTACATGAGTC 58.654 33.333 10.92 0.13 0.00 3.36
104 105 7.800155 TGTCATTTTTCTTGTACATGAGTCA 57.200 32.000 10.92 0.00 0.00 3.41
105 106 8.219546 TGTCATTTTTCTTGTACATGAGTCAA 57.780 30.769 10.92 6.66 0.00 3.18
106 107 8.681806 TGTCATTTTTCTTGTACATGAGTCAAA 58.318 29.630 10.92 11.42 0.00 2.69
107 108 9.683069 GTCATTTTTCTTGTACATGAGTCAAAT 57.317 29.630 10.92 12.77 0.00 2.32
110 111 9.696917 ATTTTTCTTGTACATGAGTCAAATTCC 57.303 29.630 10.92 0.00 0.00 3.01
111 112 6.817765 TTCTTGTACATGAGTCAAATTCCC 57.182 37.500 10.92 0.00 0.00 3.97
112 113 6.126863 TCTTGTACATGAGTCAAATTCCCT 57.873 37.500 7.33 0.00 0.00 4.20
113 114 7.252612 TCTTGTACATGAGTCAAATTCCCTA 57.747 36.000 7.33 0.00 0.00 3.53
114 115 7.103641 TCTTGTACATGAGTCAAATTCCCTAC 58.896 38.462 7.33 0.00 0.00 3.18
115 116 6.620877 TGTACATGAGTCAAATTCCCTACT 57.379 37.500 0.00 0.00 0.00 2.57
116 117 7.727578 TGTACATGAGTCAAATTCCCTACTA 57.272 36.000 0.00 0.00 0.00 1.82
117 118 8.141298 TGTACATGAGTCAAATTCCCTACTAA 57.859 34.615 0.00 0.00 0.00 2.24
118 119 8.258007 TGTACATGAGTCAAATTCCCTACTAAG 58.742 37.037 0.00 0.00 0.00 2.18
119 120 6.116126 ACATGAGTCAAATTCCCTACTAAGC 58.884 40.000 0.00 0.00 0.00 3.09
120 121 5.755409 TGAGTCAAATTCCCTACTAAGCA 57.245 39.130 0.00 0.00 0.00 3.91
121 122 5.488341 TGAGTCAAATTCCCTACTAAGCAC 58.512 41.667 0.00 0.00 0.00 4.40
122 123 5.012664 TGAGTCAAATTCCCTACTAAGCACA 59.987 40.000 0.00 0.00 0.00 4.57
123 124 6.067217 AGTCAAATTCCCTACTAAGCACAT 57.933 37.500 0.00 0.00 0.00 3.21
124 125 7.093068 TGAGTCAAATTCCCTACTAAGCACATA 60.093 37.037 0.00 0.00 0.00 2.29
125 126 7.048512 AGTCAAATTCCCTACTAAGCACATAC 58.951 38.462 0.00 0.00 0.00 2.39
126 127 7.048512 GTCAAATTCCCTACTAAGCACATACT 58.951 38.462 0.00 0.00 0.00 2.12
127 128 7.553044 GTCAAATTCCCTACTAAGCACATACTT 59.447 37.037 0.00 0.00 0.00 2.24
128 129 7.552687 TCAAATTCCCTACTAAGCACATACTTG 59.447 37.037 0.00 0.00 0.00 3.16
129 130 6.561519 ATTCCCTACTAAGCACATACTTGT 57.438 37.500 0.00 0.00 36.15 3.16
130 131 6.368779 TTCCCTACTAAGCACATACTTGTT 57.631 37.500 0.00 0.00 32.34 2.83
131 132 6.368779 TCCCTACTAAGCACATACTTGTTT 57.631 37.500 0.00 0.00 32.34 2.83
132 133 6.403878 TCCCTACTAAGCACATACTTGTTTC 58.596 40.000 0.00 0.00 32.34 2.78
133 134 6.212791 TCCCTACTAAGCACATACTTGTTTCT 59.787 38.462 0.00 0.00 32.34 2.52
134 135 6.879458 CCCTACTAAGCACATACTTGTTTCTT 59.121 38.462 0.00 0.00 32.34 2.52
135 136 7.148407 CCCTACTAAGCACATACTTGTTTCTTG 60.148 40.741 0.00 0.00 32.34 3.02
136 137 7.387948 CCTACTAAGCACATACTTGTTTCTTGT 59.612 37.037 0.00 0.00 32.34 3.16
137 138 9.419297 CTACTAAGCACATACTTGTTTCTTGTA 57.581 33.333 0.00 0.00 32.34 2.41
138 139 8.671384 ACTAAGCACATACTTGTTTCTTGTAA 57.329 30.769 0.00 0.00 32.34 2.41
139 140 8.557029 ACTAAGCACATACTTGTTTCTTGTAAC 58.443 33.333 0.00 0.00 32.34 2.50
140 141 6.935741 AGCACATACTTGTTTCTTGTAACA 57.064 33.333 0.00 0.00 36.30 2.41
141 142 7.510549 AGCACATACTTGTTTCTTGTAACAT 57.489 32.000 0.00 0.00 37.81 2.71
142 143 8.615878 AGCACATACTTGTTTCTTGTAACATA 57.384 30.769 0.00 0.00 37.81 2.29
143 144 8.721478 AGCACATACTTGTTTCTTGTAACATAG 58.279 33.333 0.00 0.00 37.81 2.23
144 145 8.504005 GCACATACTTGTTTCTTGTAACATAGT 58.496 33.333 0.00 0.00 37.81 2.12
146 147 9.772973 ACATACTTGTTTCTTGTAACATAGTCA 57.227 29.630 0.00 0.00 37.81 3.41
174 175 7.995463 TTTCTTTTTAAAATGCTAAGCACGT 57.005 28.000 0.55 0.00 43.04 4.49
175 176 7.617533 TTCTTTTTAAAATGCTAAGCACGTC 57.382 32.000 0.55 0.00 43.04 4.34
176 177 6.146898 TCTTTTTAAAATGCTAAGCACGTCC 58.853 36.000 0.55 0.00 43.04 4.79
177 178 5.440234 TTTTAAAATGCTAAGCACGTCCA 57.560 34.783 0.00 0.00 43.04 4.02
178 179 5.637006 TTTAAAATGCTAAGCACGTCCAT 57.363 34.783 0.00 0.00 43.04 3.41
179 180 6.745159 TTTAAAATGCTAAGCACGTCCATA 57.255 33.333 0.00 0.00 43.04 2.74
180 181 6.745159 TTAAAATGCTAAGCACGTCCATAA 57.255 33.333 0.00 0.00 43.04 1.90
181 182 4.616181 AAATGCTAAGCACGTCCATAAC 57.384 40.909 0.00 0.00 43.04 1.89
182 183 2.018542 TGCTAAGCACGTCCATAACC 57.981 50.000 0.00 0.00 31.71 2.85
183 184 1.276705 TGCTAAGCACGTCCATAACCA 59.723 47.619 0.00 0.00 31.71 3.67
184 185 2.093181 TGCTAAGCACGTCCATAACCAT 60.093 45.455 0.00 0.00 31.71 3.55
185 186 2.544267 GCTAAGCACGTCCATAACCATC 59.456 50.000 0.00 0.00 0.00 3.51
186 187 2.779755 AAGCACGTCCATAACCATCA 57.220 45.000 0.00 0.00 0.00 3.07
187 188 2.779755 AGCACGTCCATAACCATCAA 57.220 45.000 0.00 0.00 0.00 2.57
188 189 3.281727 AGCACGTCCATAACCATCAAT 57.718 42.857 0.00 0.00 0.00 2.57
189 190 4.415881 AGCACGTCCATAACCATCAATA 57.584 40.909 0.00 0.00 0.00 1.90
190 191 4.380531 AGCACGTCCATAACCATCAATAG 58.619 43.478 0.00 0.00 0.00 1.73
191 192 4.100963 AGCACGTCCATAACCATCAATAGA 59.899 41.667 0.00 0.00 0.00 1.98
192 193 4.997395 GCACGTCCATAACCATCAATAGAT 59.003 41.667 0.00 0.00 33.87 1.98
207 208 6.642707 TCAATAGATGAATCAATGCATGCA 57.357 33.333 25.04 25.04 34.30 3.96
208 209 7.227049 TCAATAGATGAATCAATGCATGCAT 57.773 32.000 27.46 27.46 34.83 3.96
209 210 8.343168 TCAATAGATGAATCAATGCATGCATA 57.657 30.769 32.36 19.13 33.20 3.14
210 211 8.966868 TCAATAGATGAATCAATGCATGCATAT 58.033 29.630 32.36 20.78 33.20 1.78
213 214 7.696992 AGATGAATCAATGCATGCATATACA 57.303 32.000 32.36 24.67 35.31 2.29
214 215 7.535997 AGATGAATCAATGCATGCATATACAC 58.464 34.615 32.36 22.19 35.31 2.90
215 216 6.887626 TGAATCAATGCATGCATATACACT 57.112 33.333 32.36 13.94 35.31 3.55
216 217 7.279750 TGAATCAATGCATGCATATACACTT 57.720 32.000 32.36 18.88 35.31 3.16
217 218 8.393671 TGAATCAATGCATGCATATACACTTA 57.606 30.769 32.36 12.86 35.31 2.24
218 219 8.291740 TGAATCAATGCATGCATATACACTTAC 58.708 33.333 32.36 17.00 35.31 2.34
219 220 7.748691 ATCAATGCATGCATATACACTTACA 57.251 32.000 32.36 7.32 35.31 2.41
220 221 7.748691 TCAATGCATGCATATACACTTACAT 57.251 32.000 32.36 10.34 35.31 2.29
221 222 8.845413 TCAATGCATGCATATACACTTACATA 57.155 30.769 32.36 0.00 35.31 2.29
222 223 9.452287 TCAATGCATGCATATACACTTACATAT 57.548 29.630 32.36 9.67 35.31 1.78
275 276 9.410556 AGTATGTGTTTTGAGTCATAAATTTGC 57.589 29.630 0.00 0.00 0.00 3.68
276 277 9.190858 GTATGTGTTTTGAGTCATAAATTTGCA 57.809 29.630 0.00 0.00 0.00 4.08
277 278 8.659925 ATGTGTTTTGAGTCATAAATTTGCAA 57.340 26.923 0.00 0.00 0.00 4.08
278 279 8.484641 TGTGTTTTGAGTCATAAATTTGCAAA 57.515 26.923 15.44 15.44 0.00 3.68
279 280 9.107177 TGTGTTTTGAGTCATAAATTTGCAAAT 57.893 25.926 18.99 18.99 0.00 2.32
280 281 9.934190 GTGTTTTGAGTCATAAATTTGCAAATT 57.066 25.926 27.73 27.73 40.15 1.82
306 307 5.908240 ATTACGTCATTTTCAAATTCGCG 57.092 34.783 0.00 0.00 31.15 5.87
307 308 3.262135 ACGTCATTTTCAAATTCGCGT 57.738 38.095 5.77 0.00 31.15 6.01
308 309 3.223157 ACGTCATTTTCAAATTCGCGTC 58.777 40.909 5.77 0.00 31.15 5.19
309 310 3.222361 CGTCATTTTCAAATTCGCGTCA 58.778 40.909 5.77 0.00 0.00 4.35
310 311 3.661728 CGTCATTTTCAAATTCGCGTCAA 59.338 39.130 5.77 0.00 0.00 3.18
311 312 4.429812 CGTCATTTTCAAATTCGCGTCAAC 60.430 41.667 5.77 0.00 0.00 3.18
312 313 4.675114 GTCATTTTCAAATTCGCGTCAACT 59.325 37.500 5.77 0.00 0.00 3.16
313 314 5.173131 GTCATTTTCAAATTCGCGTCAACTT 59.827 36.000 5.77 0.00 0.00 2.66
314 315 5.746245 TCATTTTCAAATTCGCGTCAACTTT 59.254 32.000 5.77 0.00 0.00 2.66
315 316 5.368552 TTTTCAAATTCGCGTCAACTTTG 57.631 34.783 5.77 10.10 0.00 2.77
316 317 2.993545 TCAAATTCGCGTCAACTTTGG 58.006 42.857 5.77 0.00 0.00 3.28
317 318 2.356382 TCAAATTCGCGTCAACTTTGGT 59.644 40.909 5.77 0.00 0.00 3.67
318 319 3.112580 CAAATTCGCGTCAACTTTGGTT 58.887 40.909 5.77 0.00 35.86 3.67
319 320 4.035324 TCAAATTCGCGTCAACTTTGGTTA 59.965 37.500 5.77 0.00 33.88 2.85
320 321 4.759516 AATTCGCGTCAACTTTGGTTAT 57.240 36.364 5.77 0.00 33.88 1.89
321 322 4.759516 ATTCGCGTCAACTTTGGTTATT 57.240 36.364 5.77 0.00 33.88 1.40
322 323 5.866335 ATTCGCGTCAACTTTGGTTATTA 57.134 34.783 5.77 0.00 33.88 0.98
323 324 5.866335 TTCGCGTCAACTTTGGTTATTAT 57.134 34.783 5.77 0.00 33.88 1.28
324 325 5.211266 TCGCGTCAACTTTGGTTATTATG 57.789 39.130 5.77 0.00 33.88 1.90
325 326 4.093703 TCGCGTCAACTTTGGTTATTATGG 59.906 41.667 5.77 0.00 33.88 2.74
326 327 4.142773 CGCGTCAACTTTGGTTATTATGGT 60.143 41.667 0.00 0.00 33.88 3.55
327 328 5.063691 CGCGTCAACTTTGGTTATTATGGTA 59.936 40.000 0.00 0.00 33.88 3.25
328 329 6.238266 CGCGTCAACTTTGGTTATTATGGTAT 60.238 38.462 0.00 0.00 33.88 2.73
329 330 7.042590 CGCGTCAACTTTGGTTATTATGGTATA 60.043 37.037 0.00 0.00 33.88 1.47
330 331 8.780249 GCGTCAACTTTGGTTATTATGGTATAT 58.220 33.333 0.00 0.00 33.88 0.86
346 347 5.643379 GGTATATACCGAAACCATACCGA 57.357 43.478 16.11 0.00 36.50 4.69
347 348 6.024552 GGTATATACCGAAACCATACCGAA 57.975 41.667 16.11 0.00 36.50 4.30
348 349 6.454795 GGTATATACCGAAACCATACCGAAA 58.545 40.000 16.11 0.00 36.50 3.46
349 350 7.099120 GGTATATACCGAAACCATACCGAAAT 58.901 38.462 16.11 0.00 36.50 2.17
350 351 8.250332 GGTATATACCGAAACCATACCGAAATA 58.750 37.037 16.11 0.00 36.50 1.40
351 352 9.638239 GTATATACCGAAACCATACCGAAATAA 57.362 33.333 1.02 0.00 0.00 1.40
353 354 9.729281 ATATACCGAAACCATACCGAAATAATT 57.271 29.630 0.00 0.00 0.00 1.40
354 355 6.762702 ACCGAAACCATACCGAAATAATTT 57.237 33.333 0.00 0.00 0.00 1.82
355 356 6.557110 ACCGAAACCATACCGAAATAATTTG 58.443 36.000 0.00 0.00 0.00 2.32
356 357 5.974751 CCGAAACCATACCGAAATAATTTGG 59.025 40.000 0.00 0.00 44.62 3.28
357 358 5.457473 CGAAACCATACCGAAATAATTTGGC 59.543 40.000 0.00 0.00 43.08 4.52
358 359 5.923733 AACCATACCGAAATAATTTGGCA 57.076 34.783 0.00 0.00 43.08 4.92
359 360 6.478512 AACCATACCGAAATAATTTGGCAT 57.521 33.333 0.00 0.00 43.08 4.40
360 361 7.589958 AACCATACCGAAATAATTTGGCATA 57.410 32.000 0.00 0.00 43.08 3.14
361 362 7.775053 ACCATACCGAAATAATTTGGCATAT 57.225 32.000 0.00 0.00 43.08 1.78
362 363 8.871629 ACCATACCGAAATAATTTGGCATATA 57.128 30.769 0.00 0.00 43.08 0.86
363 364 8.736244 ACCATACCGAAATAATTTGGCATATAC 58.264 33.333 0.00 0.00 43.08 1.47
364 365 8.188139 CCATACCGAAATAATTTGGCATATACC 58.812 37.037 0.00 0.00 43.08 2.73
365 366 6.249035 ACCGAAATAATTTGGCATATACCG 57.751 37.500 0.00 0.00 43.08 4.02
366 367 5.998981 ACCGAAATAATTTGGCATATACCGA 59.001 36.000 0.00 0.00 43.08 4.69
367 368 6.487331 ACCGAAATAATTTGGCATATACCGAA 59.513 34.615 0.00 0.00 43.08 4.30
368 369 7.013464 ACCGAAATAATTTGGCATATACCGAAA 59.987 33.333 0.00 0.00 43.08 3.46
369 370 7.325097 CCGAAATAATTTGGCATATACCGAAAC 59.675 37.037 0.00 0.00 36.66 2.78
370 371 7.325097 CGAAATAATTTGGCATATACCGAAACC 59.675 37.037 0.00 0.00 36.66 3.27
371 372 4.561735 AATTTGGCATATACCGAAACCG 57.438 40.909 0.00 0.00 36.66 4.44
372 373 2.983907 TTGGCATATACCGAAACCGA 57.016 45.000 0.00 0.00 0.00 4.69
373 374 2.983907 TGGCATATACCGAAACCGAA 57.016 45.000 0.00 0.00 0.00 4.30
374 375 2.553086 TGGCATATACCGAAACCGAAC 58.447 47.619 0.00 0.00 0.00 3.95
375 376 1.869132 GGCATATACCGAAACCGAACC 59.131 52.381 0.00 0.00 0.00 3.62
376 377 2.553086 GCATATACCGAAACCGAACCA 58.447 47.619 0.00 0.00 0.00 3.67
377 378 3.135994 GCATATACCGAAACCGAACCAT 58.864 45.455 0.00 0.00 0.00 3.55
378 379 4.309099 GCATATACCGAAACCGAACCATA 58.691 43.478 0.00 0.00 0.00 2.74
379 380 4.933400 GCATATACCGAAACCGAACCATAT 59.067 41.667 0.00 0.00 0.00 1.78
380 381 5.410439 GCATATACCGAAACCGAACCATATT 59.590 40.000 0.00 0.00 0.00 1.28
381 382 6.072893 GCATATACCGAAACCGAACCATATTT 60.073 38.462 0.00 0.00 0.00 1.40
382 383 7.520937 GCATATACCGAAACCGAACCATATTTT 60.521 37.037 0.00 0.00 0.00 1.82
383 384 8.991026 CATATACCGAAACCGAACCATATTTTA 58.009 33.333 0.00 0.00 0.00 1.52
384 385 7.862512 ATACCGAAACCGAACCATATTTTAA 57.137 32.000 0.00 0.00 0.00 1.52
385 386 6.762702 ACCGAAACCGAACCATATTTTAAT 57.237 33.333 0.00 0.00 0.00 1.40
386 387 7.160547 ACCGAAACCGAACCATATTTTAATT 57.839 32.000 0.00 0.00 0.00 1.40
387 388 7.604549 ACCGAAACCGAACCATATTTTAATTT 58.395 30.769 0.00 0.00 0.00 1.82
388 389 7.756272 ACCGAAACCGAACCATATTTTAATTTC 59.244 33.333 0.00 0.00 0.00 2.17
389 390 7.755822 CCGAAACCGAACCATATTTTAATTTCA 59.244 33.333 0.00 0.00 0.00 2.69
390 391 9.296400 CGAAACCGAACCATATTTTAATTTCAT 57.704 29.630 0.00 0.00 0.00 2.57
394 395 8.347035 ACCGAACCATATTTTAATTTCATACCG 58.653 33.333 0.00 0.00 0.00 4.02
395 396 8.347035 CCGAACCATATTTTAATTTCATACCGT 58.653 33.333 0.00 0.00 0.00 4.83
449 450 5.963176 AAAAACCGTATAAACCGAACCAT 57.037 34.783 0.00 0.00 0.00 3.55
450 451 4.950434 AAACCGTATAAACCGAACCATG 57.050 40.909 0.00 0.00 0.00 3.66
451 452 3.615224 ACCGTATAAACCGAACCATGT 57.385 42.857 0.00 0.00 0.00 3.21
452 453 4.734398 ACCGTATAAACCGAACCATGTA 57.266 40.909 0.00 0.00 0.00 2.29
453 454 5.083533 ACCGTATAAACCGAACCATGTAA 57.916 39.130 0.00 0.00 0.00 2.41
454 455 5.486526 ACCGTATAAACCGAACCATGTAAA 58.513 37.500 0.00 0.00 0.00 2.01
455 456 5.936956 ACCGTATAAACCGAACCATGTAAAA 59.063 36.000 0.00 0.00 0.00 1.52
456 457 6.128309 ACCGTATAAACCGAACCATGTAAAAC 60.128 38.462 0.00 0.00 0.00 2.43
457 458 6.250089 CGTATAAACCGAACCATGTAAAACC 58.750 40.000 0.00 0.00 0.00 3.27
458 459 6.128336 CGTATAAACCGAACCATGTAAAACCA 60.128 38.462 0.00 0.00 0.00 3.67
459 460 6.651975 ATAAACCGAACCATGTAAAACCAA 57.348 33.333 0.00 0.00 0.00 3.67
460 461 5.340439 AAACCGAACCATGTAAAACCAAA 57.660 34.783 0.00 0.00 0.00 3.28
461 462 5.340439 AACCGAACCATGTAAAACCAAAA 57.660 34.783 0.00 0.00 0.00 2.44
462 463 5.340439 ACCGAACCATGTAAAACCAAAAA 57.660 34.783 0.00 0.00 0.00 1.94
479 480 1.375551 AAAAACCGAACGCACAGAGT 58.624 45.000 0.00 0.00 0.00 3.24
480 481 0.655733 AAAACCGAACGCACAGAGTG 59.344 50.000 0.00 0.00 36.51 3.51
481 482 0.179094 AAACCGAACGCACAGAGTGA 60.179 50.000 0.58 0.00 35.23 3.41
482 483 0.597637 AACCGAACGCACAGAGTGAG 60.598 55.000 0.58 0.00 39.17 3.51
483 484 1.734477 CCGAACGCACAGAGTGAGG 60.734 63.158 0.58 0.00 37.65 3.86
484 485 1.007271 CGAACGCACAGAGTGAGGT 60.007 57.895 0.58 0.00 35.69 3.85
485 486 1.004277 CGAACGCACAGAGTGAGGTC 61.004 60.000 8.58 8.58 44.39 3.85
486 487 0.032130 GAACGCACAGAGTGAGGTCA 59.968 55.000 12.91 0.00 46.43 4.02
487 488 0.249489 AACGCACAGAGTGAGGTCAC 60.249 55.000 1.60 1.60 46.77 3.67
488 489 4.724307 GAACGCACAGAGTGAGGTCACA 62.724 54.545 12.91 0.00 46.43 3.58
497 498 2.604046 GTGAGGTCACACACACTCTT 57.396 50.000 5.21 0.00 45.75 2.85
498 499 2.474816 GTGAGGTCACACACACTCTTC 58.525 52.381 5.21 0.00 45.75 2.87
499 500 2.107366 TGAGGTCACACACACTCTTCA 58.893 47.619 0.00 0.00 0.00 3.02
500 501 2.499693 TGAGGTCACACACACTCTTCAA 59.500 45.455 0.00 0.00 0.00 2.69
501 502 3.055458 TGAGGTCACACACACTCTTCAAA 60.055 43.478 0.00 0.00 0.00 2.69
502 503 4.130118 GAGGTCACACACACTCTTCAAAT 58.870 43.478 0.00 0.00 0.00 2.32
503 504 3.879295 AGGTCACACACACTCTTCAAATG 59.121 43.478 0.00 0.00 0.00 2.32
504 505 3.627577 GGTCACACACACTCTTCAAATGT 59.372 43.478 0.00 0.00 0.00 2.71
505 506 4.096382 GGTCACACACACTCTTCAAATGTT 59.904 41.667 0.00 0.00 0.00 2.71
506 507 5.393027 GGTCACACACACTCTTCAAATGTTT 60.393 40.000 0.00 0.00 0.00 2.83
507 508 6.092748 GTCACACACACTCTTCAAATGTTTT 58.907 36.000 0.00 0.00 0.00 2.43
508 509 6.586082 GTCACACACACTCTTCAAATGTTTTT 59.414 34.615 0.00 0.00 0.00 1.94
525 526 1.083489 TTTTTCATCCCGTAGCAGCG 58.917 50.000 0.00 0.00 0.00 5.18
526 527 1.366111 TTTTCATCCCGTAGCAGCGC 61.366 55.000 0.00 0.00 0.00 5.92
527 528 2.514510 TTTCATCCCGTAGCAGCGCA 62.515 55.000 11.47 0.00 0.00 6.09
528 529 3.264897 CATCCCGTAGCAGCGCAC 61.265 66.667 11.47 0.00 0.00 5.34
529 530 4.873129 ATCCCGTAGCAGCGCACG 62.873 66.667 11.47 11.01 34.67 5.34
533 534 4.485834 CGTAGCAGCGCACGGGTA 62.486 66.667 11.47 5.82 32.64 3.69
538 539 1.738830 GCAGCGCACGGGTACTTAA 60.739 57.895 11.47 0.00 0.00 1.85
544 545 2.415893 GCGCACGGGTACTTAACTAAGA 60.416 50.000 0.30 0.00 37.08 2.10
575 584 2.987149 CCACTATAAGCGAGTTATGGCG 59.013 50.000 0.00 0.00 33.81 5.69
588 597 5.007234 CGAGTTATGGCGGAAACATTGAATA 59.993 40.000 0.00 0.00 0.00 1.75
618 627 7.224753 GTCCTTCGTTATCTTAAATCTGATGCA 59.775 37.037 0.00 0.00 0.00 3.96
643 652 2.684001 TGCTCCAATAACGTCGGATT 57.316 45.000 0.00 0.00 0.00 3.01
647 656 3.246936 GCTCCAATAACGTCGGATTTACC 59.753 47.826 0.00 0.00 0.00 2.85
648 657 4.690122 CTCCAATAACGTCGGATTTACCT 58.310 43.478 0.00 0.00 36.31 3.08
649 658 5.737063 GCTCCAATAACGTCGGATTTACCTA 60.737 44.000 0.00 0.00 36.31 3.08
650 659 6.409524 TCCAATAACGTCGGATTTACCTAT 57.590 37.500 0.00 0.00 36.31 2.57
652 661 7.274447 TCCAATAACGTCGGATTTACCTATTT 58.726 34.615 0.00 0.00 36.31 1.40
653 662 7.769970 TCCAATAACGTCGGATTTACCTATTTT 59.230 33.333 0.00 0.00 36.31 1.82
654 663 9.044150 CCAATAACGTCGGATTTACCTATTTTA 57.956 33.333 0.00 0.00 36.31 1.52
668 936 5.757850 CCTATTTTAGGGTGCAGATTCAC 57.242 43.478 0.00 0.00 42.42 3.18
669 937 5.440610 CCTATTTTAGGGTGCAGATTCACT 58.559 41.667 0.00 0.00 42.42 3.41
682 950 4.614535 GCAGATTCACTCATTTTGCTTCGT 60.615 41.667 0.00 0.00 0.00 3.85
685 953 6.685828 CAGATTCACTCATTTTGCTTCGTATG 59.314 38.462 0.00 0.00 0.00 2.39
688 956 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
689 957 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
690 958 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
691 959 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
692 960 4.565166 TCATTTTGCTTCGTATGTAGTCCG 59.435 41.667 0.00 0.00 0.00 4.79
694 962 4.700268 TTTGCTTCGTATGTAGTCCGTA 57.300 40.909 0.00 0.00 0.00 4.02
695 963 4.906065 TTGCTTCGTATGTAGTCCGTAT 57.094 40.909 0.00 0.00 0.00 3.06
696 964 4.906065 TGCTTCGTATGTAGTCCGTATT 57.094 40.909 0.00 0.00 0.00 1.89
697 965 5.252969 TGCTTCGTATGTAGTCCGTATTT 57.747 39.130 0.00 0.00 0.00 1.40
702 970 8.758715 GCTTCGTATGTAGTCCGTATTTAAAAT 58.241 33.333 0.00 0.00 0.00 1.82
793 1100 1.000145 GAAAGAGAATCCCGTGACGC 59.000 55.000 0.00 0.00 33.66 5.19
854 1161 4.910585 CGGCGGGTGGCAGATACC 62.911 72.222 0.00 0.00 46.16 2.73
915 1223 2.370633 GCTCTCCCCTCCCCTCTT 59.629 66.667 0.00 0.00 0.00 2.85
919 1227 0.254638 TCTCCCCTCCCCTCTTCCTA 60.255 60.000 0.00 0.00 0.00 2.94
1070 1379 2.844839 CTCCCCGTCCTCCATCCC 60.845 72.222 0.00 0.00 0.00 3.85
1271 1581 0.321564 TCATTTCCGCCTGGTGTGAG 60.322 55.000 6.49 0.00 36.30 3.51
1273 1583 0.606401 ATTTCCGCCTGGTGTGAGTG 60.606 55.000 6.49 0.00 36.30 3.51
1276 1586 2.357517 CGCCTGGTGTGAGTGACC 60.358 66.667 0.00 0.00 0.00 4.02
1348 1658 2.504244 GTCGAGTCGAAGGCCACG 60.504 66.667 18.42 11.10 37.72 4.94
1387 1697 1.766461 CCCCGTAAGCCATCCTCCT 60.766 63.158 0.00 0.00 0.00 3.69
1417 1733 1.977544 CGTCGGTCCCTCCTTCAGT 60.978 63.158 0.00 0.00 0.00 3.41
1418 1734 1.533469 CGTCGGTCCCTCCTTCAGTT 61.533 60.000 0.00 0.00 0.00 3.16
1443 1760 5.006746 GGAGTTGGTCGATTTTATAGCTGTG 59.993 44.000 0.00 0.00 0.00 3.66
1468 1785 2.106074 TGATGTGACGCGGGCATTC 61.106 57.895 12.47 10.08 0.00 2.67
1470 1787 3.620419 ATGTGACGCGGGCATTCCA 62.620 57.895 12.47 3.28 34.36 3.53
1577 1894 4.479993 CTTCCCAGGCTGGCGGAG 62.480 72.222 28.51 20.10 35.79 4.63
1667 1984 9.032420 GGTAGTATTATTTCTGAACTTCTTCCG 57.968 37.037 0.00 0.00 0.00 4.30
1854 2172 4.468510 TGATGTATTCCGTGGTCTAGGTTT 59.531 41.667 0.00 0.00 0.00 3.27
1862 2180 3.628487 CCGTGGTCTAGGTTTGTTTTCAA 59.372 43.478 0.00 0.00 38.10 2.69
1863 2181 4.277423 CCGTGGTCTAGGTTTGTTTTCAAT 59.723 41.667 0.00 0.00 39.70 2.57
1864 2182 5.221165 CCGTGGTCTAGGTTTGTTTTCAATT 60.221 40.000 0.00 0.00 39.70 2.32
1865 2183 6.270064 CGTGGTCTAGGTTTGTTTTCAATTT 58.730 36.000 0.00 0.00 39.70 1.82
1866 2184 6.754675 CGTGGTCTAGGTTTGTTTTCAATTTT 59.245 34.615 0.00 0.00 39.70 1.82
1867 2185 7.043656 CGTGGTCTAGGTTTGTTTTCAATTTTC 60.044 37.037 0.00 0.00 39.70 2.29
1868 2186 7.762159 GTGGTCTAGGTTTGTTTTCAATTTTCA 59.238 33.333 0.00 0.00 39.70 2.69
1874 2192 8.432110 AGGTTTGTTTTCAATTTTCATACCAC 57.568 30.769 0.00 0.00 39.70 4.16
1888 2206 9.744468 ATTTTCATACCACTACACTTGTTTTTC 57.256 29.630 0.00 0.00 0.00 2.29
1982 2308 2.839486 TCCGCAAGTCTGATGAGTTT 57.161 45.000 0.00 0.00 33.89 2.66
1985 2311 3.006430 TCCGCAAGTCTGATGAGTTTACA 59.994 43.478 0.00 0.00 33.89 2.41
1986 2312 3.935203 CCGCAAGTCTGATGAGTTTACAT 59.065 43.478 0.00 0.00 33.89 2.29
2013 2339 7.280876 TCTCTGTTCATGCTTGGAATATGTAAC 59.719 37.037 0.00 0.00 0.00 2.50
2014 2340 6.883756 TCTGTTCATGCTTGGAATATGTAACA 59.116 34.615 0.00 0.36 0.00 2.41
2015 2341 7.066163 TCTGTTCATGCTTGGAATATGTAACAG 59.934 37.037 14.95 14.95 38.89 3.16
2073 2482 7.254932 GGTCAGTAAGCAGAATAAATCATCCAC 60.255 40.741 0.00 0.00 0.00 4.02
2086 2495 9.592196 AATAAATCATCCACATAATAGCAGGTT 57.408 29.630 0.00 0.00 0.00 3.50
2166 2575 1.153568 AGGACATGTCGATGCCACG 60.154 57.895 19.33 0.00 32.14 4.94
2179 2588 5.462398 GTCGATGCCACGAGTATCTTTTATT 59.538 40.000 2.72 0.00 42.88 1.40
2246 2655 3.454812 AGACGCCTCTTGGTTATATTGGT 59.545 43.478 0.00 0.00 35.27 3.67
2491 2900 8.397906 TGACTTTCACTGTTTCTTTAACATCAG 58.602 33.333 0.00 0.00 45.31 2.90
2527 2936 4.661247 ACTTACCAGGACTCTAGAGTGT 57.339 45.455 29.84 21.62 42.66 3.55
2537 2946 4.951094 GGACTCTAGAGTGTATCACCTGTT 59.049 45.833 29.84 0.00 42.66 3.16
2584 2993 9.783256 GTCAGTAACTTTGTTTGTTAATGTCTT 57.217 29.630 11.80 0.00 42.71 3.01
2763 3172 3.604875 ATTCTTGCCCAATTTGCTGAG 57.395 42.857 0.00 0.00 0.00 3.35
2764 3173 1.259609 TCTTGCCCAATTTGCTGAGG 58.740 50.000 0.00 0.00 0.00 3.86
2765 3174 0.971386 CTTGCCCAATTTGCTGAGGT 59.029 50.000 0.00 0.00 0.00 3.85
2766 3175 1.345415 CTTGCCCAATTTGCTGAGGTT 59.655 47.619 0.00 0.00 0.00 3.50
2767 3176 1.422531 TGCCCAATTTGCTGAGGTTT 58.577 45.000 0.00 0.00 0.00 3.27
2951 3855 6.043012 GGATATAGAGATGGGCTCAATGCTAT 59.957 42.308 0.00 0.19 46.45 2.97
2994 3898 1.308998 AACGTGCTTTCCAACTCTGG 58.691 50.000 0.00 0.00 45.08 3.86
3726 4694 0.247736 GTCATCAACCAGACCTCGCT 59.752 55.000 0.00 0.00 0.00 4.93
3727 4695 0.247460 TCATCAACCAGACCTCGCTG 59.753 55.000 0.00 0.00 35.66 5.18
3743 4713 4.747108 CCTCGCTGTAGAAACAAGGATATG 59.253 45.833 0.00 0.00 34.49 1.78
4017 4991 6.936335 TCTTGTATTGAGAGATGTGCAGAAAA 59.064 34.615 0.00 0.00 0.00 2.29
4044 5018 9.539825 AAGAGAGATGTGCAGTTATAACTTATG 57.460 33.333 15.60 7.14 37.08 1.90
4481 5455 5.067936 CAGAACCATGGTAGAGTTCTACGAT 59.932 44.000 20.12 10.95 46.41 3.73
4791 5769 6.737254 TTTGTCGGAGGATATTCAAACTTC 57.263 37.500 0.00 0.00 0.00 3.01
4792 5770 4.766375 TGTCGGAGGATATTCAAACTTCC 58.234 43.478 0.00 0.00 0.00 3.46
4869 5847 8.032451 CGGTTGATTACCTGTTTAAAATTGGAT 58.968 33.333 8.72 0.00 45.40 3.41
5069 6048 5.186992 ACATATTAGCTTTTGGGGTTTGACC 59.813 40.000 0.00 0.00 37.60 4.02
5073 6052 1.890489 GCTTTTGGGGTTTGACCGTAT 59.110 47.619 0.00 0.00 39.83 3.06
5075 6054 2.660670 TTTGGGGTTTGACCGTATGT 57.339 45.000 0.00 0.00 39.83 2.29
5076 6055 3.784511 TTTGGGGTTTGACCGTATGTA 57.215 42.857 0.00 0.00 39.83 2.29
5178 6157 0.839277 TATATGCCACTGCCACTGCT 59.161 50.000 0.00 0.00 38.71 4.24
5184 6163 1.538047 CCACTGCCACTGCTATGTTT 58.462 50.000 0.00 0.00 38.71 2.83
5223 6203 2.542550 TGTGTGGGGCTAAGCTACTAA 58.457 47.619 0.00 0.00 0.00 2.24
5234 6214 2.717639 AGCTACTAAGGCCCACATTG 57.282 50.000 0.00 0.00 0.00 2.82
5256 6236 7.461182 TTGGGGCCATAGAAATAAATTATCG 57.539 36.000 4.39 0.00 0.00 2.92
5299 6279 2.310538 ACAGCCACTTTTCTCTTTGGG 58.689 47.619 0.00 0.00 0.00 4.12
5352 6332 5.406780 CACTTACTCCAGTTCACAGATTGTC 59.593 44.000 0.00 0.00 0.00 3.18
5355 6335 3.259374 ACTCCAGTTCACAGATTGTCGAT 59.741 43.478 0.00 0.00 0.00 3.59
5374 6354 6.910433 TGTCGATGTTTTGACTCTTTAAAAGC 59.090 34.615 0.00 0.00 37.20 3.51
5376 6356 7.644157 GTCGATGTTTTGACTCTTTAAAAGCTT 59.356 33.333 0.00 0.00 33.98 3.74
5532 6520 5.043248 CGATGACCAAAACTTCTGCTTTTT 58.957 37.500 0.00 0.00 0.00 1.94
5829 6817 4.836125 ACTGTGTTGGCTGATGTTAAAG 57.164 40.909 0.00 0.00 0.00 1.85
5838 6826 6.000246 TGGCTGATGTTAAAGGTGATATGA 58.000 37.500 0.00 0.00 0.00 2.15
6320 7309 4.785301 AGGTACTGCATAGCATTTGTGAT 58.215 39.130 0.00 0.00 38.13 3.06
6443 7433 8.910351 ATTGTTTCTTGCTAGATATTACTCCC 57.090 34.615 0.00 0.00 0.00 4.30
6444 7434 7.676683 TGTTTCTTGCTAGATATTACTCCCT 57.323 36.000 0.00 0.00 0.00 4.20
6445 7435 7.727181 TGTTTCTTGCTAGATATTACTCCCTC 58.273 38.462 0.00 0.00 0.00 4.30
6446 7436 6.919775 TTCTTGCTAGATATTACTCCCTCC 57.080 41.667 0.00 0.00 0.00 4.30
6447 7437 5.010933 TCTTGCTAGATATTACTCCCTCCG 58.989 45.833 0.00 0.00 0.00 4.63
6448 7438 4.383931 TGCTAGATATTACTCCCTCCGT 57.616 45.455 0.00 0.00 0.00 4.69
6449 7439 4.333690 TGCTAGATATTACTCCCTCCGTC 58.666 47.826 0.00 0.00 0.00 4.79
6450 7440 3.695556 GCTAGATATTACTCCCTCCGTCC 59.304 52.174 0.00 0.00 0.00 4.79
6451 7441 3.172471 AGATATTACTCCCTCCGTCCC 57.828 52.381 0.00 0.00 0.00 4.46
6452 7442 2.449730 AGATATTACTCCCTCCGTCCCA 59.550 50.000 0.00 0.00 0.00 4.37
6453 7443 3.077695 AGATATTACTCCCTCCGTCCCAT 59.922 47.826 0.00 0.00 0.00 4.00
6454 7444 4.294168 AGATATTACTCCCTCCGTCCCATA 59.706 45.833 0.00 0.00 0.00 2.74
6455 7445 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
6456 7446 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
6457 7447 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
6458 7448 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6459 7449 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6460 7450 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6461 7451 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
6462 7452 3.773119 TCCCTCCGTCCCATAATATAAGC 59.227 47.826 0.00 0.00 0.00 3.09
6463 7453 3.430374 CCCTCCGTCCCATAATATAAGCG 60.430 52.174 0.00 0.00 0.00 4.68
6464 7454 3.194968 CCTCCGTCCCATAATATAAGCGT 59.805 47.826 0.00 0.00 0.00 5.07
6465 7455 4.322499 CCTCCGTCCCATAATATAAGCGTT 60.322 45.833 0.00 0.00 0.00 4.84
6466 7456 5.217978 TCCGTCCCATAATATAAGCGTTT 57.782 39.130 0.00 0.00 0.00 3.60
6467 7457 5.613329 TCCGTCCCATAATATAAGCGTTTT 58.387 37.500 0.00 0.00 0.00 2.43
6468 7458 6.056884 TCCGTCCCATAATATAAGCGTTTTT 58.943 36.000 0.00 0.00 0.00 1.94
6510 7500 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
6511 7501 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
6512 7502 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
6513 7503 5.710984 ACGCTCTTATATTATGGGACGAAG 58.289 41.667 0.00 0.00 0.00 3.79
6514 7504 5.103000 CGCTCTTATATTATGGGACGAAGG 58.897 45.833 0.00 0.00 0.00 3.46
6515 7505 5.420409 GCTCTTATATTATGGGACGAAGGG 58.580 45.833 0.00 0.00 0.00 3.95
6516 7506 5.187186 GCTCTTATATTATGGGACGAAGGGA 59.813 44.000 0.00 0.00 0.00 4.20
6517 7507 6.628398 GCTCTTATATTATGGGACGAAGGGAG 60.628 46.154 0.00 0.00 0.00 4.30
6518 7508 6.320518 TCTTATATTATGGGACGAAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
6519 7509 7.472741 TCTTATATTATGGGACGAAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
6535 7525 7.014422 CGAAGGGAGTAGAATATAACCTGAAGT 59.986 40.741 0.00 0.00 0.00 3.01
6560 7550 9.169468 GTTAAACACACACATGAACATTTAGAG 57.831 33.333 0.00 0.00 0.00 2.43
6561 7551 7.566760 AAACACACACATGAACATTTAGAGA 57.433 32.000 0.00 0.00 0.00 3.10
6562 7552 7.750229 AACACACACATGAACATTTAGAGAT 57.250 32.000 0.00 0.00 0.00 2.75
6563 7553 8.846943 AACACACACATGAACATTTAGAGATA 57.153 30.769 0.00 0.00 0.00 1.98
6793 7842 4.130118 CTCATCTGGGCATAACTAACACC 58.870 47.826 0.00 0.00 0.00 4.16
6805 7854 6.037830 GCATAACTAACACCGTAAACATGGAT 59.962 38.462 0.00 0.00 0.00 3.41
6806 7855 5.873179 AACTAACACCGTAAACATGGATG 57.127 39.130 0.00 0.00 0.00 3.51
6807 7856 3.687698 ACTAACACCGTAAACATGGATGC 59.312 43.478 0.00 0.00 0.00 3.91
6808 7857 2.489938 ACACCGTAAACATGGATGCT 57.510 45.000 0.00 0.00 0.00 3.79
6937 7986 3.723554 GTGAAGTCACCCGAGCTAG 57.276 57.895 0.00 0.00 40.85 3.42
6998 8179 3.492102 TTAAGCTTCACAGGAGTTGCT 57.508 42.857 0.00 0.00 0.00 3.91
7001 8182 2.225467 AGCTTCACAGGAGTTGCTTTC 58.775 47.619 0.00 0.00 0.00 2.62
7002 8183 1.069636 GCTTCACAGGAGTTGCTTTCG 60.070 52.381 0.00 0.00 0.00 3.46
7050 8232 4.702831 TCATTGTGCTGCCGATAATAAGA 58.297 39.130 0.00 0.00 0.00 2.10
7085 8267 2.624316 TAGACGACCGAATCACACAC 57.376 50.000 0.00 0.00 0.00 3.82
7086 8268 0.671796 AGACGACCGAATCACACACA 59.328 50.000 0.00 0.00 0.00 3.72
7128 8310 3.524095 ACAGGGACCAAATCAATGTGA 57.476 42.857 0.00 0.00 0.00 3.58
7290 8558 2.623765 CCATTTGATGATCACCCCACCA 60.624 50.000 0.00 0.00 0.00 4.17
7296 8564 0.178906 TGATCACCCCACCACTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
7305 8573 3.308688 CCCCACCACTCTCAAAGATTGAT 60.309 47.826 0.00 0.00 39.30 2.57
7381 8679 0.036010 ACCAACTCCCAGAATCTGCG 60.036 55.000 4.40 0.00 0.00 5.18
7403 8701 1.555075 AGCGAGGAAATTACAGCTCCA 59.445 47.619 0.00 0.00 0.00 3.86
7419 8717 5.769662 ACAGCTCCATCATTTTGAACTACAA 59.230 36.000 0.00 0.00 36.65 2.41
7432 8730 7.859325 TTTGAACTACAACTTCACTAGCTTT 57.141 32.000 0.00 0.00 38.29 3.51
7456 8754 2.267324 GGAGGTGTGGAGCAGAGC 59.733 66.667 0.00 0.00 0.00 4.09
7462 8760 2.203082 TGTGGAGCAGAGCGACACT 61.203 57.895 15.90 0.00 39.43 3.55
7463 8761 1.735920 GTGGAGCAGAGCGACACTG 60.736 63.158 10.37 0.00 37.20 3.66
7464 8762 1.903404 TGGAGCAGAGCGACACTGA 60.903 57.895 8.07 0.00 37.54 3.41
7465 8763 1.290324 GGAGCAGAGCGACACTGAA 59.710 57.895 8.07 0.00 37.54 3.02
7466 8764 1.011451 GGAGCAGAGCGACACTGAAC 61.011 60.000 8.07 2.39 37.54 3.18
7467 8765 0.319040 GAGCAGAGCGACACTGAACA 60.319 55.000 8.07 0.00 37.54 3.18
7481 8779 4.288626 ACACTGAACAGGGCCTAAATCTTA 59.711 41.667 5.28 0.00 34.48 2.10
7506 8804 8.677148 AATAGTGTGGCAAATAATCTAATCGT 57.323 30.769 0.00 0.00 0.00 3.73
7513 8811 6.706270 TGGCAAATAATCTAATCGTCTTCTCC 59.294 38.462 0.00 0.00 0.00 3.71
7515 8813 6.128795 GCAAATAATCTAATCGTCTTCTCCGG 60.129 42.308 0.00 0.00 0.00 5.14
7529 8827 4.159135 TCTTCTCCGGTGATACCTAAACAC 59.841 45.833 7.11 0.00 35.66 3.32
7564 8862 1.288752 GTTCATGGGCCAAACACCG 59.711 57.895 11.89 0.00 0.00 4.94
7566 8864 4.067913 CATGGGCCAAACACCGCC 62.068 66.667 11.89 0.00 44.92 6.13
7584 8882 2.223386 CGCCGACCTTTCAGAAAACAAA 60.223 45.455 0.00 0.00 0.00 2.83
7585 8883 3.732471 CGCCGACCTTTCAGAAAACAAAA 60.732 43.478 0.00 0.00 0.00 2.44
7586 8884 3.550275 GCCGACCTTTCAGAAAACAAAAC 59.450 43.478 0.00 0.00 0.00 2.43
7587 8885 4.739195 CCGACCTTTCAGAAAACAAAACA 58.261 39.130 0.00 0.00 0.00 2.83
7588 8886 5.164954 CCGACCTTTCAGAAAACAAAACAA 58.835 37.500 0.00 0.00 0.00 2.83
7647 8946 1.813513 AATCAAACTGAGGCGTCCAG 58.186 50.000 3.56 4.26 37.64 3.86
7670 8969 8.859090 CCAGAAAATCATGCCCATAACTATTAA 58.141 33.333 0.00 0.00 0.00 1.40
7800 9104 3.225104 TCTCTGCAAGACTTTGGCAAAT 58.775 40.909 13.89 3.91 38.67 2.32
7804 9108 2.557924 TGCAAGACTTTGGCAAATCGAT 59.442 40.909 13.89 0.00 34.79 3.59
7813 9117 2.627945 TGGCAAATCGATACTGTCACC 58.372 47.619 9.90 3.97 0.00 4.02
7869 9173 5.360714 AGGTTTTTGAAAGCTCATTCAGTCA 59.639 36.000 1.35 0.00 40.21 3.41
7908 9212 6.469410 TGGAAAACCTTGAGTGATAACGTAT 58.531 36.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.390603 GGTTAACCATTCAATTTTTCGGCC 59.609 41.667 20.12 0.00 35.64 6.13
1 2 4.090786 CGGTTAACCATTCAATTTTTCGGC 59.909 41.667 24.14 0.00 35.14 5.54
2 3 5.462405 TCGGTTAACCATTCAATTTTTCGG 58.538 37.500 24.14 3.00 35.14 4.30
3 4 6.994868 TTCGGTTAACCATTCAATTTTTCG 57.005 33.333 24.14 5.67 35.14 3.46
6 7 9.210329 GGTTTATTCGGTTAACCATTCAATTTT 57.790 29.630 24.14 1.35 40.77 1.82
7 8 7.542824 CGGTTTATTCGGTTAACCATTCAATTT 59.457 33.333 24.14 2.83 41.06 1.82
8 9 7.030768 CGGTTTATTCGGTTAACCATTCAATT 58.969 34.615 24.14 4.29 41.06 2.32
9 10 6.374894 TCGGTTTATTCGGTTAACCATTCAAT 59.625 34.615 24.14 16.48 41.06 2.57
10 11 5.704515 TCGGTTTATTCGGTTAACCATTCAA 59.295 36.000 24.14 10.94 41.06 2.69
11 12 5.243981 TCGGTTTATTCGGTTAACCATTCA 58.756 37.500 24.14 5.07 41.06 2.57
12 13 5.799681 TCGGTTTATTCGGTTAACCATTC 57.200 39.130 24.14 6.87 41.06 2.67
13 14 5.706833 ACTTCGGTTTATTCGGTTAACCATT 59.293 36.000 24.14 10.36 41.06 3.16
14 15 5.247862 ACTTCGGTTTATTCGGTTAACCAT 58.752 37.500 24.14 13.32 41.06 3.55
15 16 4.640364 ACTTCGGTTTATTCGGTTAACCA 58.360 39.130 24.14 6.28 41.06 3.67
16 17 6.720012 TTACTTCGGTTTATTCGGTTAACC 57.280 37.500 15.13 15.13 38.33 2.85
17 18 9.611284 ATTTTTACTTCGGTTTATTCGGTTAAC 57.389 29.630 0.00 0.00 0.00 2.01
53 54 9.739276 ACTTATATGGTTGTTCATCTCAAGAAA 57.261 29.630 0.00 0.00 0.00 2.52
54 55 9.739276 AACTTATATGGTTGTTCATCTCAAGAA 57.261 29.630 0.00 0.00 0.00 2.52
55 56 9.166173 CAACTTATATGGTTGTTCATCTCAAGA 57.834 33.333 12.37 0.00 39.14 3.02
76 77 8.686334 ACTCATGTACAAGAAAAATGACAACTT 58.314 29.630 0.00 0.00 0.00 2.66
77 78 8.225603 ACTCATGTACAAGAAAAATGACAACT 57.774 30.769 0.00 0.00 0.00 3.16
78 79 8.128582 TGACTCATGTACAAGAAAAATGACAAC 58.871 33.333 0.00 0.00 0.00 3.32
79 80 8.219546 TGACTCATGTACAAGAAAAATGACAA 57.780 30.769 0.00 0.00 0.00 3.18
80 81 7.800155 TGACTCATGTACAAGAAAAATGACA 57.200 32.000 0.00 0.00 0.00 3.58
81 82 9.683069 ATTTGACTCATGTACAAGAAAAATGAC 57.317 29.630 0.00 0.00 0.00 3.06
84 85 9.696917 GGAATTTGACTCATGTACAAGAAAAAT 57.303 29.630 0.00 5.15 0.00 1.82
85 86 8.141268 GGGAATTTGACTCATGTACAAGAAAAA 58.859 33.333 0.00 2.98 0.00 1.94
86 87 7.505585 AGGGAATTTGACTCATGTACAAGAAAA 59.494 33.333 0.00 0.00 0.00 2.29
87 88 7.004086 AGGGAATTTGACTCATGTACAAGAAA 58.996 34.615 0.00 0.00 0.00 2.52
88 89 6.542821 AGGGAATTTGACTCATGTACAAGAA 58.457 36.000 0.00 0.00 0.00 2.52
89 90 6.126863 AGGGAATTTGACTCATGTACAAGA 57.873 37.500 0.00 0.00 0.00 3.02
90 91 7.106239 AGTAGGGAATTTGACTCATGTACAAG 58.894 38.462 0.00 0.00 0.00 3.16
91 92 7.016153 AGTAGGGAATTTGACTCATGTACAA 57.984 36.000 0.00 0.00 0.00 2.41
92 93 6.620877 AGTAGGGAATTTGACTCATGTACA 57.379 37.500 0.00 0.00 0.00 2.90
93 94 7.224949 GCTTAGTAGGGAATTTGACTCATGTAC 59.775 40.741 0.00 0.00 0.00 2.90
94 95 7.093068 TGCTTAGTAGGGAATTTGACTCATGTA 60.093 37.037 0.00 0.00 0.00 2.29
95 96 6.116126 GCTTAGTAGGGAATTTGACTCATGT 58.884 40.000 0.00 0.00 0.00 3.21
96 97 6.037610 GTGCTTAGTAGGGAATTTGACTCATG 59.962 42.308 0.00 0.00 0.00 3.07
97 98 6.116126 GTGCTTAGTAGGGAATTTGACTCAT 58.884 40.000 0.00 0.00 0.00 2.90
98 99 5.012664 TGTGCTTAGTAGGGAATTTGACTCA 59.987 40.000 0.00 0.00 0.00 3.41
99 100 5.488341 TGTGCTTAGTAGGGAATTTGACTC 58.512 41.667 0.00 0.00 0.00 3.36
100 101 5.499004 TGTGCTTAGTAGGGAATTTGACT 57.501 39.130 0.00 0.00 0.00 3.41
101 102 7.048512 AGTATGTGCTTAGTAGGGAATTTGAC 58.951 38.462 0.00 0.00 0.00 3.18
102 103 7.195374 AGTATGTGCTTAGTAGGGAATTTGA 57.805 36.000 0.00 0.00 0.00 2.69
103 104 7.336931 ACAAGTATGTGCTTAGTAGGGAATTTG 59.663 37.037 0.00 0.00 38.69 2.32
104 105 7.402862 ACAAGTATGTGCTTAGTAGGGAATTT 58.597 34.615 0.00 0.00 38.69 1.82
105 106 6.958767 ACAAGTATGTGCTTAGTAGGGAATT 58.041 36.000 0.00 0.00 38.69 2.17
106 107 6.561519 ACAAGTATGTGCTTAGTAGGGAAT 57.438 37.500 0.00 0.00 38.69 3.01
107 108 6.368779 AACAAGTATGTGCTTAGTAGGGAA 57.631 37.500 0.00 0.00 40.46 3.97
108 109 6.212791 AGAAACAAGTATGTGCTTAGTAGGGA 59.787 38.462 0.00 0.00 40.46 4.20
109 110 6.407202 AGAAACAAGTATGTGCTTAGTAGGG 58.593 40.000 0.00 0.00 40.46 3.53
110 111 7.387948 ACAAGAAACAAGTATGTGCTTAGTAGG 59.612 37.037 0.00 0.00 40.46 3.18
111 112 8.311650 ACAAGAAACAAGTATGTGCTTAGTAG 57.688 34.615 0.00 0.00 40.46 2.57
112 113 9.767228 TTACAAGAAACAAGTATGTGCTTAGTA 57.233 29.630 0.00 0.00 40.46 1.82
113 114 8.557029 GTTACAAGAAACAAGTATGTGCTTAGT 58.443 33.333 0.00 0.00 40.46 2.24
114 115 8.556194 TGTTACAAGAAACAAGTATGTGCTTAG 58.444 33.333 0.00 0.00 40.46 2.18
115 116 8.439993 TGTTACAAGAAACAAGTATGTGCTTA 57.560 30.769 0.00 0.00 40.46 3.09
116 117 7.328277 TGTTACAAGAAACAAGTATGTGCTT 57.672 32.000 0.00 0.00 40.46 3.91
117 118 6.935741 TGTTACAAGAAACAAGTATGTGCT 57.064 33.333 0.00 0.00 40.46 4.40
118 119 8.504005 ACTATGTTACAAGAAACAAGTATGTGC 58.496 33.333 0.00 0.00 42.33 4.57
120 121 9.772973 TGACTATGTTACAAGAAACAAGTATGT 57.227 29.630 0.00 0.00 42.33 2.29
148 149 8.874816 ACGTGCTTAGCATTTTAAAAAGAAAAA 58.125 25.926 11.03 0.00 41.91 1.94
149 150 8.413899 ACGTGCTTAGCATTTTAAAAAGAAAA 57.586 26.923 11.03 0.00 41.91 2.29
150 151 7.168469 GGACGTGCTTAGCATTTTAAAAAGAAA 59.832 33.333 11.03 0.00 41.91 2.52
151 152 6.639279 GGACGTGCTTAGCATTTTAAAAAGAA 59.361 34.615 11.03 0.00 41.91 2.52
152 153 6.146898 GGACGTGCTTAGCATTTTAAAAAGA 58.853 36.000 11.03 0.00 41.91 2.52
153 154 5.918011 TGGACGTGCTTAGCATTTTAAAAAG 59.082 36.000 11.03 1.41 41.91 2.27
154 155 5.833082 TGGACGTGCTTAGCATTTTAAAAA 58.167 33.333 11.03 0.00 41.91 1.94
155 156 5.440234 TGGACGTGCTTAGCATTTTAAAA 57.560 34.783 11.03 2.51 41.91 1.52
156 157 5.637006 ATGGACGTGCTTAGCATTTTAAA 57.363 34.783 11.03 0.00 41.91 1.52
157 158 6.403855 GGTTATGGACGTGCTTAGCATTTTAA 60.404 38.462 11.03 0.00 41.91 1.52
158 159 5.065474 GGTTATGGACGTGCTTAGCATTTTA 59.935 40.000 11.03 0.00 41.91 1.52
159 160 4.142469 GGTTATGGACGTGCTTAGCATTTT 60.142 41.667 11.03 0.00 41.91 1.82
160 161 3.377172 GGTTATGGACGTGCTTAGCATTT 59.623 43.478 11.03 0.00 41.91 2.32
161 162 2.943033 GGTTATGGACGTGCTTAGCATT 59.057 45.455 11.03 0.00 41.91 3.56
162 163 2.093181 TGGTTATGGACGTGCTTAGCAT 60.093 45.455 11.03 0.00 41.91 3.79
163 164 1.276705 TGGTTATGGACGTGCTTAGCA 59.723 47.619 15.89 1.39 35.60 3.49
164 165 2.018542 TGGTTATGGACGTGCTTAGC 57.981 50.000 8.99 8.40 0.00 3.09
165 166 3.792401 TGATGGTTATGGACGTGCTTAG 58.208 45.455 8.99 0.00 0.00 2.18
166 167 3.897141 TGATGGTTATGGACGTGCTTA 57.103 42.857 8.99 3.27 0.00 3.09
167 168 2.779755 TGATGGTTATGGACGTGCTT 57.220 45.000 8.99 4.42 0.00 3.91
168 169 2.779755 TTGATGGTTATGGACGTGCT 57.220 45.000 8.99 0.00 0.00 4.40
169 170 4.377021 TCTATTGATGGTTATGGACGTGC 58.623 43.478 0.00 0.00 0.00 5.34
170 171 6.471976 CATCTATTGATGGTTATGGACGTG 57.528 41.667 9.04 0.00 44.63 4.49
182 183 7.761249 ATGCATGCATTGATTCATCTATTGATG 59.239 33.333 27.46 10.49 41.31 3.07
183 184 7.227049 TGCATGCATTGATTCATCTATTGAT 57.773 32.000 18.46 0.00 33.34 2.57
184 185 6.642707 TGCATGCATTGATTCATCTATTGA 57.357 33.333 18.46 0.00 0.00 2.57
187 188 9.403583 TGTATATGCATGCATTGATTCATCTAT 57.596 29.630 36.23 21.35 37.82 1.98
188 189 8.671028 GTGTATATGCATGCATTGATTCATCTA 58.329 33.333 36.23 16.04 37.82 1.98
189 190 7.393515 AGTGTATATGCATGCATTGATTCATCT 59.606 33.333 36.23 21.51 37.82 2.90
190 191 7.535997 AGTGTATATGCATGCATTGATTCATC 58.464 34.615 36.23 20.09 37.82 2.92
191 192 7.462571 AGTGTATATGCATGCATTGATTCAT 57.537 32.000 36.23 24.03 37.82 2.57
192 193 6.887626 AGTGTATATGCATGCATTGATTCA 57.112 33.333 36.23 24.15 37.82 2.57
193 194 8.291740 TGTAAGTGTATATGCATGCATTGATTC 58.708 33.333 36.23 22.07 37.82 2.52
194 195 8.168790 TGTAAGTGTATATGCATGCATTGATT 57.831 30.769 36.23 22.67 37.82 2.57
195 196 7.748691 TGTAAGTGTATATGCATGCATTGAT 57.251 32.000 36.23 26.07 37.82 2.57
196 197 7.748691 ATGTAAGTGTATATGCATGCATTGA 57.251 32.000 36.23 21.29 37.82 2.57
249 250 9.410556 GCAAATTTATGACTCAAAACACATACT 57.589 29.630 0.00 0.00 0.00 2.12
250 251 9.190858 TGCAAATTTATGACTCAAAACACATAC 57.809 29.630 0.00 0.00 0.00 2.39
251 252 9.755804 TTGCAAATTTATGACTCAAAACACATA 57.244 25.926 0.00 0.00 0.00 2.29
252 253 8.659925 TTGCAAATTTATGACTCAAAACACAT 57.340 26.923 0.00 0.00 0.00 3.21
253 254 8.484641 TTTGCAAATTTATGACTCAAAACACA 57.515 26.923 8.05 0.00 0.00 3.72
254 255 9.934190 AATTTGCAAATTTATGACTCAAAACAC 57.066 25.926 27.73 0.00 35.16 3.32
280 281 9.149556 CGCGAATTTGAAAATGACGTAATAATA 57.850 29.630 0.00 0.00 34.20 0.98
281 282 7.694784 ACGCGAATTTGAAAATGACGTAATAAT 59.305 29.630 15.93 0.00 33.31 1.28
282 283 7.016466 ACGCGAATTTGAAAATGACGTAATAA 58.984 30.769 15.93 0.00 33.31 1.40
283 284 6.535811 ACGCGAATTTGAAAATGACGTAATA 58.464 32.000 15.93 0.00 33.31 0.98
284 285 5.387279 ACGCGAATTTGAAAATGACGTAAT 58.613 33.333 15.93 0.00 33.31 1.89
285 286 4.774586 ACGCGAATTTGAAAATGACGTAA 58.225 34.783 15.93 0.00 33.31 3.18
286 287 4.084485 TGACGCGAATTTGAAAATGACGTA 60.084 37.500 15.93 0.00 34.40 3.57
287 288 3.223157 GACGCGAATTTGAAAATGACGT 58.777 40.909 15.93 9.40 35.85 4.34
288 289 3.222361 TGACGCGAATTTGAAAATGACG 58.778 40.909 15.93 9.63 34.53 4.35
289 290 4.675114 AGTTGACGCGAATTTGAAAATGAC 59.325 37.500 15.93 0.00 0.00 3.06
290 291 4.854399 AGTTGACGCGAATTTGAAAATGA 58.146 34.783 15.93 0.00 0.00 2.57
291 292 5.559694 AAGTTGACGCGAATTTGAAAATG 57.440 34.783 15.93 0.00 0.00 2.32
292 293 5.051106 CCAAAGTTGACGCGAATTTGAAAAT 60.051 36.000 15.93 0.00 33.69 1.82
293 294 4.266502 CCAAAGTTGACGCGAATTTGAAAA 59.733 37.500 15.93 0.00 33.69 2.29
294 295 3.794028 CCAAAGTTGACGCGAATTTGAAA 59.206 39.130 15.93 0.00 33.69 2.69
295 296 3.181495 ACCAAAGTTGACGCGAATTTGAA 60.181 39.130 15.93 0.00 33.69 2.69
296 297 2.356382 ACCAAAGTTGACGCGAATTTGA 59.644 40.909 15.93 0.00 33.69 2.69
297 298 2.726633 ACCAAAGTTGACGCGAATTTG 58.273 42.857 15.93 12.71 0.00 2.32
298 299 3.430333 AACCAAAGTTGACGCGAATTT 57.570 38.095 15.93 0.00 33.97 1.82
299 300 4.759516 ATAACCAAAGTTGACGCGAATT 57.240 36.364 15.93 0.00 36.68 2.17
300 301 4.759516 AATAACCAAAGTTGACGCGAAT 57.240 36.364 15.93 0.00 36.68 3.34
301 302 5.391097 CCATAATAACCAAAGTTGACGCGAA 60.391 40.000 15.93 0.00 36.68 4.70
302 303 4.093703 CCATAATAACCAAAGTTGACGCGA 59.906 41.667 15.93 0.00 36.68 5.87
303 304 4.142773 ACCATAATAACCAAAGTTGACGCG 60.143 41.667 3.53 3.53 36.68 6.01
304 305 5.305139 ACCATAATAACCAAAGTTGACGC 57.695 39.130 0.00 0.00 36.68 5.19
313 314 9.723601 GGTTTCGGTATATACCATAATAACCAA 57.276 33.333 27.58 6.30 46.80 3.67
314 315 8.878211 TGGTTTCGGTATATACCATAATAACCA 58.122 33.333 28.04 28.04 46.80 3.67
315 316 9.895138 ATGGTTTCGGTATATACCATAATAACC 57.105 33.333 27.58 26.28 46.65 2.85
321 322 6.889177 TCGGTATGGTTTCGGTATATACCATA 59.111 38.462 27.58 17.66 46.65 2.74
323 324 5.076182 TCGGTATGGTTTCGGTATATACCA 58.924 41.667 27.58 13.16 46.80 3.25
324 325 5.643379 TCGGTATGGTTTCGGTATATACC 57.357 43.478 20.39 20.39 42.98 2.73
325 326 9.638239 TTATTTCGGTATGGTTTCGGTATATAC 57.362 33.333 4.14 4.14 0.00 1.47
327 328 9.729281 AATTATTTCGGTATGGTTTCGGTATAT 57.271 29.630 0.00 0.00 0.00 0.86
328 329 9.558396 AAATTATTTCGGTATGGTTTCGGTATA 57.442 29.630 0.00 0.00 0.00 1.47
329 330 8.347035 CAAATTATTTCGGTATGGTTTCGGTAT 58.653 33.333 0.00 0.00 0.00 2.73
330 331 7.201714 CCAAATTATTTCGGTATGGTTTCGGTA 60.202 37.037 0.00 0.00 0.00 4.02
331 332 6.404954 CCAAATTATTTCGGTATGGTTTCGGT 60.405 38.462 0.00 0.00 0.00 4.69
332 333 5.974751 CCAAATTATTTCGGTATGGTTTCGG 59.025 40.000 0.00 0.00 0.00 4.30
333 334 5.457473 GCCAAATTATTTCGGTATGGTTTCG 59.543 40.000 7.57 0.00 0.00 3.46
334 335 6.334202 TGCCAAATTATTTCGGTATGGTTTC 58.666 36.000 7.57 0.00 0.00 2.78
335 336 6.287589 TGCCAAATTATTTCGGTATGGTTT 57.712 33.333 7.57 0.00 0.00 3.27
336 337 5.923733 TGCCAAATTATTTCGGTATGGTT 57.076 34.783 7.57 0.00 0.00 3.67
337 338 7.775053 ATATGCCAAATTATTTCGGTATGGT 57.225 32.000 14.56 6.00 0.00 3.55
338 339 8.188139 GGTATATGCCAAATTATTTCGGTATGG 58.812 37.037 4.76 4.23 0.00 2.74
339 340 7.908082 CGGTATATGCCAAATTATTTCGGTATG 59.092 37.037 10.70 0.00 0.00 2.39
340 341 7.825270 TCGGTATATGCCAAATTATTTCGGTAT 59.175 33.333 10.70 11.67 0.00 2.73
341 342 7.160049 TCGGTATATGCCAAATTATTTCGGTA 58.840 34.615 10.70 4.57 0.00 4.02
342 343 5.998981 TCGGTATATGCCAAATTATTTCGGT 59.001 36.000 10.70 0.00 0.00 4.69
343 344 6.489127 TCGGTATATGCCAAATTATTTCGG 57.511 37.500 10.70 0.00 0.00 4.30
344 345 7.325097 GGTTTCGGTATATGCCAAATTATTTCG 59.675 37.037 10.70 0.00 0.00 3.46
345 346 7.325097 CGGTTTCGGTATATGCCAAATTATTTC 59.675 37.037 10.70 0.00 0.00 2.17
346 347 7.013464 TCGGTTTCGGTATATGCCAAATTATTT 59.987 33.333 10.70 0.00 36.95 1.40
347 348 6.487331 TCGGTTTCGGTATATGCCAAATTATT 59.513 34.615 10.70 0.00 36.95 1.40
348 349 5.998981 TCGGTTTCGGTATATGCCAAATTAT 59.001 36.000 10.70 0.00 36.95 1.28
349 350 5.366460 TCGGTTTCGGTATATGCCAAATTA 58.634 37.500 10.70 0.00 36.95 1.40
350 351 4.200874 TCGGTTTCGGTATATGCCAAATT 58.799 39.130 10.70 0.00 36.95 1.82
351 352 3.811083 TCGGTTTCGGTATATGCCAAAT 58.189 40.909 10.70 0.00 36.95 2.32
352 353 3.263489 TCGGTTTCGGTATATGCCAAA 57.737 42.857 10.70 6.94 36.95 3.28
353 354 2.937799 GTTCGGTTTCGGTATATGCCAA 59.062 45.455 10.70 1.12 36.95 4.52
354 355 2.553086 GTTCGGTTTCGGTATATGCCA 58.447 47.619 10.70 0.00 36.95 4.92
355 356 1.869132 GGTTCGGTTTCGGTATATGCC 59.131 52.381 0.00 0.00 36.95 4.40
356 357 2.553086 TGGTTCGGTTTCGGTATATGC 58.447 47.619 0.00 0.00 36.95 3.14
357 358 7.429636 AAATATGGTTCGGTTTCGGTATATG 57.570 36.000 0.00 0.00 36.95 1.78
358 359 9.558396 TTAAAATATGGTTCGGTTTCGGTATAT 57.442 29.630 0.00 0.00 36.95 0.86
359 360 8.954950 TTAAAATATGGTTCGGTTTCGGTATA 57.045 30.769 0.00 0.00 36.95 1.47
360 361 7.862512 TTAAAATATGGTTCGGTTTCGGTAT 57.137 32.000 0.00 0.00 36.95 2.73
361 362 7.862512 ATTAAAATATGGTTCGGTTTCGGTA 57.137 32.000 0.00 0.00 36.95 4.02
362 363 6.762702 ATTAAAATATGGTTCGGTTTCGGT 57.237 33.333 0.00 0.00 36.95 4.69
363 364 7.755822 TGAAATTAAAATATGGTTCGGTTTCGG 59.244 33.333 0.00 0.00 36.95 4.30
364 365 8.676454 TGAAATTAAAATATGGTTCGGTTTCG 57.324 30.769 0.00 0.00 37.82 3.46
368 369 8.347035 CGGTATGAAATTAAAATATGGTTCGGT 58.653 33.333 0.00 0.00 0.00 4.69
369 370 8.347035 ACGGTATGAAATTAAAATATGGTTCGG 58.653 33.333 0.00 0.00 0.00 4.30
427 428 5.241285 ACATGGTTCGGTTTATACGGTTTTT 59.759 36.000 0.00 0.00 0.00 1.94
428 429 4.761227 ACATGGTTCGGTTTATACGGTTTT 59.239 37.500 0.00 0.00 0.00 2.43
429 430 4.325972 ACATGGTTCGGTTTATACGGTTT 58.674 39.130 0.00 0.00 0.00 3.27
430 431 3.941573 ACATGGTTCGGTTTATACGGTT 58.058 40.909 0.00 0.00 0.00 4.44
431 432 3.615224 ACATGGTTCGGTTTATACGGT 57.385 42.857 0.00 0.00 0.00 4.83
432 433 6.250089 GTTTTACATGGTTCGGTTTATACGG 58.750 40.000 0.00 0.00 0.00 4.02
433 434 6.128336 TGGTTTTACATGGTTCGGTTTATACG 60.128 38.462 0.00 0.00 0.00 3.06
434 435 7.143514 TGGTTTTACATGGTTCGGTTTATAC 57.856 36.000 0.00 0.00 0.00 1.47
435 436 7.756395 TTGGTTTTACATGGTTCGGTTTATA 57.244 32.000 0.00 0.00 0.00 0.98
436 437 6.651975 TTGGTTTTACATGGTTCGGTTTAT 57.348 33.333 0.00 0.00 0.00 1.40
437 438 6.461110 TTTGGTTTTACATGGTTCGGTTTA 57.539 33.333 0.00 0.00 0.00 2.01
438 439 5.340439 TTTGGTTTTACATGGTTCGGTTT 57.660 34.783 0.00 0.00 0.00 3.27
439 440 5.340439 TTTTGGTTTTACATGGTTCGGTT 57.660 34.783 0.00 0.00 0.00 4.44
440 441 5.340439 TTTTTGGTTTTACATGGTTCGGT 57.660 34.783 0.00 0.00 0.00 4.69
460 461 1.063469 CACTCTGTGCGTTCGGTTTTT 59.937 47.619 0.00 0.00 0.00 1.94
461 462 0.655733 CACTCTGTGCGTTCGGTTTT 59.344 50.000 0.00 0.00 0.00 2.43
462 463 0.179094 TCACTCTGTGCGTTCGGTTT 60.179 50.000 0.00 0.00 32.98 3.27
463 464 0.597637 CTCACTCTGTGCGTTCGGTT 60.598 55.000 0.00 0.00 32.98 4.44
464 465 1.007271 CTCACTCTGTGCGTTCGGT 60.007 57.895 0.00 0.00 32.98 4.69
465 466 1.734477 CCTCACTCTGTGCGTTCGG 60.734 63.158 0.00 0.00 32.98 4.30
466 467 1.004277 GACCTCACTCTGTGCGTTCG 61.004 60.000 0.00 0.00 32.98 3.95
467 468 0.032130 TGACCTCACTCTGTGCGTTC 59.968 55.000 0.00 0.00 32.98 3.95
468 469 0.249489 GTGACCTCACTCTGTGCGTT 60.249 55.000 0.00 0.00 43.25 4.84
469 470 1.364171 GTGACCTCACTCTGTGCGT 59.636 57.895 0.00 0.00 43.25 5.24
470 471 0.941463 GTGTGACCTCACTCTGTGCG 60.941 60.000 6.97 0.00 46.55 5.34
471 472 0.104855 TGTGTGACCTCACTCTGTGC 59.895 55.000 6.97 0.00 46.55 4.57
472 473 1.136891 TGTGTGTGACCTCACTCTGTG 59.863 52.381 6.97 0.00 46.55 3.66
473 474 1.137086 GTGTGTGTGACCTCACTCTGT 59.863 52.381 6.97 0.00 46.55 3.41
474 475 1.410517 AGTGTGTGTGACCTCACTCTG 59.589 52.381 6.97 0.00 46.55 3.35
475 476 1.781786 AGTGTGTGTGACCTCACTCT 58.218 50.000 6.97 7.74 46.55 3.24
476 477 2.141535 GAGTGTGTGTGACCTCACTC 57.858 55.000 15.25 15.25 46.55 3.51
477 478 1.781786 AGAGTGTGTGTGACCTCACT 58.218 50.000 6.97 7.98 46.55 3.41
478 479 2.159099 TGAAGAGTGTGTGTGACCTCAC 60.159 50.000 0.00 0.00 46.59 3.51
479 480 2.107366 TGAAGAGTGTGTGTGACCTCA 58.893 47.619 0.00 0.00 0.00 3.86
480 481 2.890808 TGAAGAGTGTGTGTGACCTC 57.109 50.000 0.00 0.00 0.00 3.85
481 482 3.627395 TTTGAAGAGTGTGTGTGACCT 57.373 42.857 0.00 0.00 0.00 3.85
482 483 3.627577 ACATTTGAAGAGTGTGTGTGACC 59.372 43.478 0.00 0.00 0.00 4.02
483 484 4.882671 ACATTTGAAGAGTGTGTGTGAC 57.117 40.909 0.00 0.00 0.00 3.67
484 485 5.895636 AAACATTTGAAGAGTGTGTGTGA 57.104 34.783 0.00 0.00 0.00 3.58
485 486 6.949578 AAAAACATTTGAAGAGTGTGTGTG 57.050 33.333 0.00 0.00 0.00 3.82
506 507 1.083489 CGCTGCTACGGGATGAAAAA 58.917 50.000 0.00 0.00 0.00 1.94
507 508 1.366111 GCGCTGCTACGGGATGAAAA 61.366 55.000 0.00 0.00 0.00 2.29
508 509 1.813753 GCGCTGCTACGGGATGAAA 60.814 57.895 0.00 0.00 0.00 2.69
509 510 2.202878 GCGCTGCTACGGGATGAA 60.203 61.111 0.00 0.00 0.00 2.57
510 511 3.457263 TGCGCTGCTACGGGATGA 61.457 61.111 9.73 0.00 0.00 2.92
511 512 3.264897 GTGCGCTGCTACGGGATG 61.265 66.667 9.73 0.00 0.00 3.51
512 513 4.873129 CGTGCGCTGCTACGGGAT 62.873 66.667 9.73 0.00 36.71 3.85
516 517 4.485834 TACCCGTGCGCTGCTACG 62.486 66.667 9.73 10.30 39.83 3.51
517 518 2.830704 AAGTACCCGTGCGCTGCTAC 62.831 60.000 9.73 0.00 0.00 3.58
518 519 1.314534 TAAGTACCCGTGCGCTGCTA 61.315 55.000 9.73 0.00 0.00 3.49
519 520 2.162338 TTAAGTACCCGTGCGCTGCT 62.162 55.000 9.73 0.00 0.00 4.24
520 521 1.738830 TTAAGTACCCGTGCGCTGC 60.739 57.895 9.73 0.00 0.00 5.25
521 522 0.389426 AGTTAAGTACCCGTGCGCTG 60.389 55.000 9.73 0.08 0.00 5.18
522 523 1.176527 TAGTTAAGTACCCGTGCGCT 58.823 50.000 9.73 0.00 0.00 5.92
523 524 1.922545 CTTAGTTAAGTACCCGTGCGC 59.077 52.381 0.00 0.00 0.00 6.09
524 525 3.492421 TCTTAGTTAAGTACCCGTGCG 57.508 47.619 0.00 0.00 34.93 5.34
525 526 6.732531 AAAATCTTAGTTAAGTACCCGTGC 57.267 37.500 0.00 0.00 34.93 5.34
544 545 8.788325 AACTCGCTTATAGTGGACTTAAAAAT 57.212 30.769 0.00 0.00 0.00 1.82
560 561 2.273557 GTTTCCGCCATAACTCGCTTA 58.726 47.619 0.00 0.00 0.00 3.09
561 562 1.084289 GTTTCCGCCATAACTCGCTT 58.916 50.000 0.00 0.00 0.00 4.68
562 563 0.036765 TGTTTCCGCCATAACTCGCT 60.037 50.000 0.00 0.00 0.00 4.93
563 564 1.014352 ATGTTTCCGCCATAACTCGC 58.986 50.000 0.00 0.00 0.00 5.03
564 565 2.675844 TCAATGTTTCCGCCATAACTCG 59.324 45.455 0.00 0.00 0.00 4.18
565 566 4.695217 TTCAATGTTTCCGCCATAACTC 57.305 40.909 0.00 0.00 0.00 3.01
575 584 5.277345 CGAAGGACCGATATTCAATGTTTCC 60.277 44.000 0.00 0.00 0.00 3.13
588 597 6.924060 CAGATTTAAGATAACGAAGGACCGAT 59.076 38.462 0.00 0.00 0.00 4.18
618 627 3.807622 CCGACGTTATTGGAGCAATGTAT 59.192 43.478 0.00 0.00 35.54 2.29
621 630 2.276201 TCCGACGTTATTGGAGCAATG 58.724 47.619 0.00 0.00 35.72 2.82
633 642 6.051074 CCCTAAAATAGGTAAATCCGACGTT 58.949 40.000 0.00 0.00 44.73 3.99
634 643 5.129320 ACCCTAAAATAGGTAAATCCGACGT 59.871 40.000 0.00 0.00 44.73 4.34
643 652 6.826741 GTGAATCTGCACCCTAAAATAGGTAA 59.173 38.462 2.93 0.00 44.73 2.85
647 656 6.115446 TGAGTGAATCTGCACCCTAAAATAG 58.885 40.000 0.00 0.00 39.59 1.73
648 657 6.061022 TGAGTGAATCTGCACCCTAAAATA 57.939 37.500 0.00 0.00 39.59 1.40
649 658 4.922206 TGAGTGAATCTGCACCCTAAAAT 58.078 39.130 0.00 0.00 39.59 1.82
650 659 4.365514 TGAGTGAATCTGCACCCTAAAA 57.634 40.909 0.00 0.00 39.59 1.52
652 661 4.574674 AATGAGTGAATCTGCACCCTAA 57.425 40.909 0.00 0.00 39.59 2.69
653 662 4.574674 AAATGAGTGAATCTGCACCCTA 57.425 40.909 0.00 0.00 39.59 3.53
654 663 3.446442 AAATGAGTGAATCTGCACCCT 57.554 42.857 0.00 0.00 39.59 4.34
655 664 3.841643 CAAAATGAGTGAATCTGCACCC 58.158 45.455 0.00 0.00 39.59 4.61
656 665 3.057033 AGCAAAATGAGTGAATCTGCACC 60.057 43.478 0.00 0.00 39.59 5.01
657 666 4.170292 AGCAAAATGAGTGAATCTGCAC 57.830 40.909 0.00 0.00 39.05 4.57
659 668 3.850273 CGAAGCAAAATGAGTGAATCTGC 59.150 43.478 0.00 0.00 0.00 4.26
660 669 5.039480 ACGAAGCAAAATGAGTGAATCTG 57.961 39.130 0.00 0.00 0.00 2.90
668 936 5.276395 CGGACTACATACGAAGCAAAATGAG 60.276 44.000 0.00 0.00 0.00 2.90
669 937 4.565166 CGGACTACATACGAAGCAAAATGA 59.435 41.667 0.00 0.00 0.00 2.57
793 1100 1.704007 GGAGGAGATGGGAAGGCAGG 61.704 65.000 0.00 0.00 0.00 4.85
854 1161 2.096614 GGTTGTTGGTGTCGTATTCGTG 60.097 50.000 0.00 0.00 38.33 4.35
915 1223 1.000041 GAGGAGGGAGGGAGGTAGGA 61.000 65.000 0.00 0.00 0.00 2.94
919 1227 2.947785 ACGAGGAGGGAGGGAGGT 60.948 66.667 0.00 0.00 0.00 3.85
1214 1524 0.037590 CAACAGATTGGGGGTTCCGA 59.962 55.000 0.00 0.00 38.76 4.55
1290 1600 3.775654 GCACCCTAGGCTGCGAGT 61.776 66.667 13.27 0.00 0.00 4.18
1300 1610 2.041922 ATGAGGAGGCGCACCCTA 60.042 61.111 18.09 8.93 46.60 3.53
1397 1707 3.459063 GAAGGAGGGACCGACGGG 61.459 72.222 20.00 0.00 44.74 5.28
1400 1710 0.037232 CAACTGAAGGAGGGACCGAC 60.037 60.000 0.00 0.00 44.74 4.79
1409 1725 1.070134 CGACCAACTCCAACTGAAGGA 59.930 52.381 0.00 0.00 0.00 3.36
1417 1733 5.584649 CAGCTATAAAATCGACCAACTCCAA 59.415 40.000 0.00 0.00 0.00 3.53
1418 1734 5.116180 CAGCTATAAAATCGACCAACTCCA 58.884 41.667 0.00 0.00 0.00 3.86
1443 1760 1.148157 CCGCGTCACATCACATCTCC 61.148 60.000 4.92 0.00 0.00 3.71
1672 1989 9.123902 CCAATAACTGATGGTTTCTATTGATGA 57.876 33.333 0.00 0.00 35.24 2.92
1854 2172 8.908903 AGTGTAGTGGTATGAAAATTGAAAACA 58.091 29.630 0.00 0.00 0.00 2.83
1862 2180 9.744468 GAAAAACAAGTGTAGTGGTATGAAAAT 57.256 29.630 0.00 0.00 0.00 1.82
1863 2181 7.911205 CGAAAAACAAGTGTAGTGGTATGAAAA 59.089 33.333 0.00 0.00 0.00 2.29
1864 2182 7.411274 CGAAAAACAAGTGTAGTGGTATGAAA 58.589 34.615 0.00 0.00 0.00 2.69
1865 2183 6.512091 GCGAAAAACAAGTGTAGTGGTATGAA 60.512 38.462 0.00 0.00 0.00 2.57
1866 2184 5.049954 GCGAAAAACAAGTGTAGTGGTATGA 60.050 40.000 0.00 0.00 0.00 2.15
1867 2185 5.144359 GCGAAAAACAAGTGTAGTGGTATG 58.856 41.667 0.00 0.00 0.00 2.39
1868 2186 4.214758 GGCGAAAAACAAGTGTAGTGGTAT 59.785 41.667 0.00 0.00 0.00 2.73
1874 2192 3.982576 AAGGGCGAAAAACAAGTGTAG 57.017 42.857 0.00 0.00 0.00 2.74
1888 2206 1.200020 CTAACCAAGCAGAAAAGGGCG 59.800 52.381 0.00 0.00 34.54 6.13
1941 2260 1.280710 TGCCCGTGGATCAACTAACAT 59.719 47.619 0.00 0.00 0.00 2.71
1982 2308 5.164620 TCCAAGCATGAACAGAGAATGTA 57.835 39.130 0.00 0.00 43.00 2.29
1985 2311 6.832384 ACATATTCCAAGCATGAACAGAGAAT 59.168 34.615 0.00 0.00 0.00 2.40
1986 2312 6.182627 ACATATTCCAAGCATGAACAGAGAA 58.817 36.000 0.00 0.00 0.00 2.87
2013 2339 6.132791 TCTTCTAGCGGAATAGTGTTACTG 57.867 41.667 0.00 0.00 33.01 2.74
2014 2340 6.963083 ATCTTCTAGCGGAATAGTGTTACT 57.037 37.500 0.00 0.00 33.01 2.24
2015 2341 9.771915 GTATATCTTCTAGCGGAATAGTGTTAC 57.228 37.037 0.00 0.00 33.01 2.50
2088 2497 9.929180 GTCTTAAACTGCATACATGAGGATATA 57.071 33.333 0.00 0.00 0.00 0.86
2089 2498 8.432013 TGTCTTAAACTGCATACATGAGGATAT 58.568 33.333 0.00 0.00 0.00 1.63
2179 2588 4.335315 CAGAATCAAGCGTATTAAGGGCAA 59.665 41.667 0.00 0.00 0.00 4.52
2246 2655 7.811117 AACTTACAGCCAGTGTGTTAAATAA 57.189 32.000 0.00 0.00 40.69 1.40
2296 2705 1.429930 TGCTCCACCACCTCTACAAA 58.570 50.000 0.00 0.00 0.00 2.83
2527 2936 5.014123 AGGTCAGGAAATTGAACAGGTGATA 59.986 40.000 0.00 0.00 37.25 2.15
2537 2946 6.778821 TGACAGAATAAGGTCAGGAAATTGA 58.221 36.000 0.00 0.00 39.00 2.57
2763 3172 8.654215 CAACGAATACTAGAGTTCCTAAAAACC 58.346 37.037 0.00 0.00 0.00 3.27
2764 3173 8.167345 GCAACGAATACTAGAGTTCCTAAAAAC 58.833 37.037 0.00 0.00 0.00 2.43
2765 3174 7.332678 GGCAACGAATACTAGAGTTCCTAAAAA 59.667 37.037 0.00 0.00 0.00 1.94
2766 3175 6.815142 GGCAACGAATACTAGAGTTCCTAAAA 59.185 38.462 0.00 0.00 0.00 1.52
2767 3176 6.335777 GGCAACGAATACTAGAGTTCCTAAA 58.664 40.000 0.00 0.00 0.00 1.85
2994 3898 5.360714 TGGCAAATGATCAAATCCCTACTTC 59.639 40.000 0.00 0.00 0.00 3.01
2998 3902 3.631686 CGTGGCAAATGATCAAATCCCTA 59.368 43.478 0.00 0.00 0.00 3.53
3444 4357 8.469200 TCATGTATCCAGAAAAAGCATAAAAGG 58.531 33.333 0.00 0.00 0.00 3.11
3724 4692 5.755813 CATGCATATCCTTGTTTCTACAGC 58.244 41.667 0.00 0.00 35.28 4.40
3726 4694 5.192176 TGCATGCATATCCTTGTTTCTACA 58.808 37.500 18.46 0.00 0.00 2.74
3727 4695 5.756195 TGCATGCATATCCTTGTTTCTAC 57.244 39.130 18.46 0.00 0.00 2.59
3743 4713 2.794910 GCATGTGATTGAGAATGCATGC 59.205 45.455 11.82 11.82 43.84 4.06
4073 5047 5.068591 AGCAATTCCGATATGGGGTTAAAAC 59.931 40.000 3.67 0.00 38.76 2.43
4522 5496 2.095461 GCTTCCTCAAAATCTGACCCC 58.905 52.381 0.00 0.00 0.00 4.95
4536 5510 5.184892 AGATAAGGTTGACAATGCTTCCT 57.815 39.130 0.00 0.00 0.00 3.36
4791 5769 9.035890 AGATCTCTTTTTACCCCTTAAATTTGG 57.964 33.333 0.00 0.00 29.47 3.28
4834 5812 2.164338 GGTAATCAACCGGCCTTTTGA 58.836 47.619 15.95 15.95 38.88 2.69
5073 6052 8.942338 AACGTAAATCTAAAGCTCATGATACA 57.058 30.769 0.00 0.00 0.00 2.29
5075 6054 9.764363 ATGAACGTAAATCTAAAGCTCATGATA 57.236 29.630 0.00 0.00 0.00 2.15
5076 6055 8.668510 ATGAACGTAAATCTAAAGCTCATGAT 57.331 30.769 0.00 0.00 0.00 2.45
5096 6075 7.088589 AGTTACCATTGCAATGACTATGAAC 57.911 36.000 35.47 25.58 38.70 3.18
5158 6137 1.422781 AGCAGTGGCAGTGGCATATAT 59.577 47.619 23.48 7.11 44.61 0.86
5211 6191 1.485066 TGTGGGCCTTAGTAGCTTAGC 59.515 52.381 4.53 0.00 0.00 3.09
5234 6214 8.570068 TTACGATAATTTATTTCTATGGCCCC 57.430 34.615 0.00 0.00 0.00 5.80
5283 6263 0.969149 GCCCCCAAAGAGAAAAGTGG 59.031 55.000 0.00 0.00 0.00 4.00
5286 6266 2.822561 GAGAAGCCCCCAAAGAGAAAAG 59.177 50.000 0.00 0.00 0.00 2.27
5293 6273 0.401738 TCACAGAGAAGCCCCCAAAG 59.598 55.000 0.00 0.00 0.00 2.77
5299 6279 0.248843 CTGAGGTCACAGAGAAGCCC 59.751 60.000 0.00 0.00 39.94 5.19
5352 6332 7.914537 AAGCTTTTAAAGAGTCAAAACATCG 57.085 32.000 9.10 0.00 0.00 3.84
5355 6335 8.303876 AGACAAAGCTTTTAAAGAGTCAAAACA 58.696 29.630 20.67 0.00 0.00 2.83
5462 6450 9.653287 TCTGGTCACTGTTTTTCTGTATATAAG 57.347 33.333 0.00 0.00 0.00 1.73
5474 6462 3.016736 CCACAACTCTGGTCACTGTTTT 58.983 45.455 0.00 0.00 0.00 2.43
5498 6486 3.520290 TTGGTCATCGACATGGTCTAC 57.480 47.619 0.00 0.00 33.68 2.59
5532 6520 2.773458 GAACTCCCTCCAGTTCCCA 58.227 57.895 2.46 0.00 44.56 4.37
5718 6706 1.401761 TTGCACACAGGCAGTTCAAT 58.598 45.000 0.00 0.00 45.88 2.57
5829 6817 5.099042 ACCTGGTAACACTTCATATCACC 57.901 43.478 0.00 0.00 46.17 4.02
5838 6826 9.582648 ACATTCTAAAAATACCTGGTAACACTT 57.417 29.630 11.17 5.09 46.17 3.16
5894 6882 7.286087 GGAAGGAAAAAGTGGGTACTCTTTTTA 59.714 37.037 22.75 0.00 44.48 1.52
5910 6898 7.178451 GTCCAATTCTATCTTGGGAAGGAAAAA 59.822 37.037 2.48 0.00 42.83 1.94
6150 7138 4.458989 CCTATATGAGCTCACAGGAGAGAC 59.541 50.000 26.16 0.00 44.26 3.36
6338 7327 7.352738 AGTACTACCCAACTACTAGCTTACAT 58.647 38.462 0.00 0.00 0.00 2.29
6439 7429 4.141914 GCTTATATTATGGGACGGAGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
6440 7430 3.773119 GCTTATATTATGGGACGGAGGGA 59.227 47.826 0.00 0.00 0.00 4.20
6441 7431 3.430374 CGCTTATATTATGGGACGGAGGG 60.430 52.174 0.00 0.00 0.00 4.30
6442 7432 3.194968 ACGCTTATATTATGGGACGGAGG 59.805 47.826 0.00 0.00 0.00 4.30
6443 7433 4.451629 ACGCTTATATTATGGGACGGAG 57.548 45.455 0.00 0.00 0.00 4.63
6444 7434 4.877378 AACGCTTATATTATGGGACGGA 57.123 40.909 0.00 0.00 0.00 4.69
6445 7435 5.934935 AAAACGCTTATATTATGGGACGG 57.065 39.130 0.00 0.00 0.00 4.79
6486 7476 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
6487 7477 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
6488 7478 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
6489 7479 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
6490 7480 5.336531 CCTTCGTCCCATAATATAAGAGCGT 60.337 44.000 0.00 0.00 0.00 5.07
6491 7481 5.103000 CCTTCGTCCCATAATATAAGAGCG 58.897 45.833 0.00 0.00 0.00 5.03
6492 7482 5.187186 TCCCTTCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
6493 7483 6.437793 ACTCCCTTCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
6494 7484 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
6495 7485 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
6496 7486 7.472741 TCTACTCCCTTCGTCCCATAATATAA 58.527 38.462 0.00 0.00 0.00 0.98
6497 7487 7.036154 TCTACTCCCTTCGTCCCATAATATA 57.964 40.000 0.00 0.00 0.00 0.86
6498 7488 5.900437 TCTACTCCCTTCGTCCCATAATAT 58.100 41.667 0.00 0.00 0.00 1.28
6499 7489 5.329191 TCTACTCCCTTCGTCCCATAATA 57.671 43.478 0.00 0.00 0.00 0.98
6500 7490 4.194678 TCTACTCCCTTCGTCCCATAAT 57.805 45.455 0.00 0.00 0.00 1.28
6501 7491 3.675348 TCTACTCCCTTCGTCCCATAA 57.325 47.619 0.00 0.00 0.00 1.90
6502 7492 3.675348 TTCTACTCCCTTCGTCCCATA 57.325 47.619 0.00 0.00 0.00 2.74
6503 7493 2.544844 TTCTACTCCCTTCGTCCCAT 57.455 50.000 0.00 0.00 0.00 4.00
6504 7494 2.544844 ATTCTACTCCCTTCGTCCCA 57.455 50.000 0.00 0.00 0.00 4.37
6505 7495 5.047448 GGTTATATTCTACTCCCTTCGTCCC 60.047 48.000 0.00 0.00 0.00 4.46
6506 7496 5.774184 AGGTTATATTCTACTCCCTTCGTCC 59.226 44.000 0.00 0.00 0.00 4.79
6507 7497 6.489361 TCAGGTTATATTCTACTCCCTTCGTC 59.511 42.308 0.00 0.00 0.00 4.20
6508 7498 6.371278 TCAGGTTATATTCTACTCCCTTCGT 58.629 40.000 0.00 0.00 0.00 3.85
6509 7499 6.896021 TCAGGTTATATTCTACTCCCTTCG 57.104 41.667 0.00 0.00 0.00 3.79
6510 7500 8.252624 ACTTCAGGTTATATTCTACTCCCTTC 57.747 38.462 0.00 0.00 0.00 3.46
6511 7501 8.625467 AACTTCAGGTTATATTCTACTCCCTT 57.375 34.615 0.00 0.00 36.23 3.95
6512 7502 9.725206 TTAACTTCAGGTTATATTCTACTCCCT 57.275 33.333 0.00 0.00 39.75 4.20
6519 7509 9.787435 TGTGTGTTTAACTTCAGGTTATATTCT 57.213 29.630 0.00 0.00 39.75 2.40
6535 7525 9.114952 TCTCTAAATGTTCATGTGTGTGTTTAA 57.885 29.630 0.00 0.00 0.00 1.52
6575 7565 2.291411 ACGGGCAGTACTCTTCTAGGAA 60.291 50.000 0.00 0.00 0.00 3.36
6576 7566 1.284198 ACGGGCAGTACTCTTCTAGGA 59.716 52.381 0.00 0.00 0.00 2.94
6577 7567 1.765230 ACGGGCAGTACTCTTCTAGG 58.235 55.000 0.00 0.00 0.00 3.02
6578 7568 4.135306 TCATACGGGCAGTACTCTTCTAG 58.865 47.826 0.00 0.00 38.29 2.43
6579 7569 4.160642 TCATACGGGCAGTACTCTTCTA 57.839 45.455 0.00 0.00 38.29 2.10
6772 7817 3.431626 CGGTGTTAGTTATGCCCAGATGA 60.432 47.826 0.00 0.00 0.00 2.92
6793 7842 1.813896 CGCAAGCATCCATGTTTACG 58.186 50.000 0.00 0.00 32.91 3.18
6937 7986 5.359576 TGGGTTTATTTCCACATACATGAGC 59.640 40.000 0.00 0.00 0.00 4.26
6998 8179 5.916318 TCACAAGAGTTACCCTTAACGAAA 58.084 37.500 0.00 0.00 42.28 3.46
7001 8182 5.235516 ACATCACAAGAGTTACCCTTAACG 58.764 41.667 0.00 0.00 42.28 3.18
7002 8183 6.465084 AGACATCACAAGAGTTACCCTTAAC 58.535 40.000 0.00 0.00 38.34 2.01
7050 8232 5.880887 GGTCGTCTAATCTGGGATTTTCTTT 59.119 40.000 0.00 0.00 0.00 2.52
7085 8267 4.005650 ACAAATACATGCTCTCCTGTGTG 58.994 43.478 0.00 0.00 0.00 3.82
7086 8268 4.292186 ACAAATACATGCTCTCCTGTGT 57.708 40.909 0.00 0.00 0.00 3.72
7128 8310 6.468333 TGTAATATTGAGCCATTGCATGTT 57.532 33.333 0.00 0.00 41.13 2.71
7148 8330 3.250762 GCTGCAAGTTCAGTGACAATGTA 59.749 43.478 2.39 0.00 36.49 2.29
7235 8503 7.458397 AGTGTGGGTTAAGATCTAATTTCACA 58.542 34.615 13.53 13.53 0.00 3.58
7290 8558 2.357569 GGCCCCATCAATCTTTGAGAGT 60.358 50.000 0.00 0.00 43.98 3.24
7296 8564 0.712380 ACAGGGCCCCATCAATCTTT 59.288 50.000 21.43 0.00 0.00 2.52
7305 8573 3.820425 CTGACTTACAGGGCCCCA 58.180 61.111 21.43 6.28 42.39 4.96
7381 8679 2.205911 GAGCTGTAATTTCCTCGCTCC 58.794 52.381 0.00 0.00 38.27 4.70
7395 8693 5.316167 TGTAGTTCAAAATGATGGAGCTGT 58.684 37.500 0.00 0.00 0.00 4.40
7403 8701 8.507249 GCTAGTGAAGTTGTAGTTCAAAATGAT 58.493 33.333 0.00 0.00 39.07 2.45
7432 8730 4.631740 TCCACACCTCCGCTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
7443 8741 2.024319 GTGTCGCTCTGCTCCACAC 61.024 63.158 0.00 0.00 30.83 3.82
7456 8754 0.320374 TTAGGCCCTGTTCAGTGTCG 59.680 55.000 0.00 0.00 0.00 4.35
7462 8760 7.054124 CACTATTAAGATTTAGGCCCTGTTCA 58.946 38.462 0.00 0.00 0.00 3.18
7463 8761 7.012421 CACACTATTAAGATTTAGGCCCTGTTC 59.988 40.741 0.00 0.00 0.00 3.18
7464 8762 6.828785 CACACTATTAAGATTTAGGCCCTGTT 59.171 38.462 0.00 0.00 0.00 3.16
7465 8763 6.357367 CACACTATTAAGATTTAGGCCCTGT 58.643 40.000 0.00 0.00 0.00 4.00
7466 8764 5.765182 CCACACTATTAAGATTTAGGCCCTG 59.235 44.000 0.00 0.00 0.00 4.45
7467 8765 5.690364 GCCACACTATTAAGATTTAGGCCCT 60.690 44.000 0.00 0.00 32.50 5.19
7481 8779 8.677148 ACGATTAGATTATTTGCCACACTATT 57.323 30.769 0.00 0.00 0.00 1.73
7503 8801 1.064906 AGGTATCACCGGAGAAGACGA 60.065 52.381 9.46 0.00 44.90 4.20
7506 8804 4.159135 GTGTTTAGGTATCACCGGAGAAGA 59.841 45.833 9.46 0.00 44.90 2.87
7513 8811 1.472026 CCCCGTGTTTAGGTATCACCG 60.472 57.143 0.00 0.00 44.90 4.94
7515 8813 3.339253 AACCCCGTGTTTAGGTATCAC 57.661 47.619 0.00 0.00 31.47 3.06
7529 8827 2.004733 GAACATCTTCCGTTAACCCCG 58.995 52.381 0.00 0.00 0.00 5.73
7564 8862 3.430333 TTTGTTTTCTGAAAGGTCGGC 57.570 42.857 2.75 0.00 0.00 5.54
7566 8864 6.237808 CCATTGTTTTGTTTTCTGAAAGGTCG 60.238 38.462 2.75 0.00 0.00 4.79
7796 9100 4.935205 TGAAAGGGTGACAGTATCGATTTG 59.065 41.667 1.71 5.62 0.00 2.32
7800 9104 3.132289 GGATGAAAGGGTGACAGTATCGA 59.868 47.826 0.00 0.00 0.00 3.59
7804 9108 2.976185 TGTGGATGAAAGGGTGACAGTA 59.024 45.455 0.00 0.00 0.00 2.74
7886 9190 7.749126 CCAAATACGTTATCACTCAAGGTTTTC 59.251 37.037 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.