Multiple sequence alignment - TraesCS2D01G476500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G476500 chr2D 100.000 6170 0 0 1 6170 578933831 578927662 0.000000e+00 11394.0
1 TraesCS2D01G476500 chr2D 80.173 1735 313 23 2364 4083 579187680 579185962 0.000000e+00 1269.0
2 TraesCS2D01G476500 chr2D 77.297 762 134 23 5432 6170 578706044 578705299 4.450000e-111 412.0
3 TraesCS2D01G476500 chr2D 100.000 30 0 0 5020 5049 578928782 578928753 8.640000e-04 56.5
4 TraesCS2D01G476500 chr2D 100.000 30 0 0 5050 5079 578928812 578928783 8.640000e-04 56.5
5 TraesCS2D01G476500 chr2B 95.885 4253 129 19 836 5049 695844399 695840154 0.000000e+00 6842.0
6 TraesCS2D01G476500 chr2B 94.484 1124 48 3 5052 6170 695840181 695839067 0.000000e+00 1720.0
7 TraesCS2D01G476500 chr2B 80.323 1733 305 26 2364 4078 696289737 696288023 0.000000e+00 1279.0
8 TraesCS2D01G476500 chr2B 90.078 514 47 3 1 512 695845431 695844920 0.000000e+00 664.0
9 TraesCS2D01G476500 chr2B 78.763 598 103 11 5584 6170 695596357 695595773 4.510000e-101 379.0
10 TraesCS2D01G476500 chr2B 86.364 242 19 9 619 850 695844651 695844414 1.030000e-62 252.0
11 TraesCS2D01G476500 chr2B 88.482 191 21 1 1 191 771927324 771927513 4.810000e-56 230.0
12 TraesCS2D01G476500 chr2A 95.046 4219 135 22 745 4945 716460232 716456070 0.000000e+00 6565.0
13 TraesCS2D01G476500 chr2A 80.208 1733 301 25 2364 4078 716897652 716895944 0.000000e+00 1262.0
14 TraesCS2D01G476500 chr2A 94.237 642 29 1 5529 6170 716455873 716455240 0.000000e+00 974.0
15 TraesCS2D01G476500 chr2A 78.631 599 107 12 5584 6170 716236399 716235810 1.620000e-100 377.0
16 TraesCS2D01G476500 chr4D 74.140 1628 357 53 2474 4061 385738754 385737151 3.160000e-172 616.0
17 TraesCS2D01G476500 chr4B 73.983 1622 370 46 2474 4061 472391991 472390388 1.470000e-170 610.0
18 TraesCS2D01G476500 chr4B 89.730 185 18 1 3 187 612256407 612256590 1.030000e-57 235.0
19 TraesCS2D01G476500 chr4A 73.969 1625 365 49 2474 4061 67174341 67172738 6.840000e-169 604.0
20 TraesCS2D01G476500 chr4A 90.957 188 16 1 1 188 546505799 546505613 1.030000e-62 252.0
21 TraesCS2D01G476500 chr5B 90.374 187 18 0 1 187 158223584 158223398 4.780000e-61 246.0
22 TraesCS2D01G476500 chr1A 89.894 188 19 0 1 188 513246282 513246469 6.180000e-60 243.0
23 TraesCS2D01G476500 chr3B 91.011 178 14 2 4 181 639392444 639392269 7.990000e-59 239.0
24 TraesCS2D01G476500 chr5D 88.770 187 18 2 1 187 302161555 302161372 6.220000e-55 226.0
25 TraesCS2D01G476500 chr6A 85.308 211 24 7 1 209 5045166 5045371 1.740000e-50 211.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G476500 chr2D 578927662 578933831 6169 True 11394.0 11394 100.00000 1 6170 1 chr2D.!!$R2 6169
1 TraesCS2D01G476500 chr2D 579185962 579187680 1718 True 1269.0 1269 80.17300 2364 4083 1 chr2D.!!$R3 1719
2 TraesCS2D01G476500 chr2D 578705299 578706044 745 True 412.0 412 77.29700 5432 6170 1 chr2D.!!$R1 738
3 TraesCS2D01G476500 chr2B 695839067 695845431 6364 True 2369.5 6842 91.70275 1 6170 4 chr2B.!!$R3 6169
4 TraesCS2D01G476500 chr2B 696288023 696289737 1714 True 1279.0 1279 80.32300 2364 4078 1 chr2B.!!$R2 1714
5 TraesCS2D01G476500 chr2B 695595773 695596357 584 True 379.0 379 78.76300 5584 6170 1 chr2B.!!$R1 586
6 TraesCS2D01G476500 chr2A 716455240 716460232 4992 True 3769.5 6565 94.64150 745 6170 2 chr2A.!!$R3 5425
7 TraesCS2D01G476500 chr2A 716895944 716897652 1708 True 1262.0 1262 80.20800 2364 4078 1 chr2A.!!$R2 1714
8 TraesCS2D01G476500 chr2A 716235810 716236399 589 True 377.0 377 78.63100 5584 6170 1 chr2A.!!$R1 586
9 TraesCS2D01G476500 chr4D 385737151 385738754 1603 True 616.0 616 74.14000 2474 4061 1 chr4D.!!$R1 1587
10 TraesCS2D01G476500 chr4B 472390388 472391991 1603 True 610.0 610 73.98300 2474 4061 1 chr4B.!!$R1 1587
11 TraesCS2D01G476500 chr4A 67172738 67174341 1603 True 604.0 604 73.96900 2474 4061 1 chr4A.!!$R1 1587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.535335 TAGACCATCTCCACGGTTGC 59.465 55.000 0.00 0.00 34.99 4.17 F
926 1141 0.899720 ATCGAACGAGCCCTTTACCA 59.100 50.000 2.94 0.00 0.00 3.25 F
1309 1530 0.033504 GATCCCGAGCGCCATCTTAA 59.966 55.000 2.29 0.00 0.00 1.85 F
1794 2021 0.107654 GTATGCTCCGGTTCTGCCTT 60.108 55.000 0.00 0.00 34.25 4.35 F
2341 2572 1.569548 CCCCAGGAGTAGTACCTCTGA 59.430 57.143 17.24 0.00 35.35 3.27 F
3711 3945 0.543277 CCCTACAGATCTGCCAAGCA 59.457 55.000 22.83 0.59 36.92 3.91 F
4634 4897 0.105964 GTACCCGTGCCATATGCTGA 59.894 55.000 0.00 0.00 42.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1502 0.601311 CGCTCGGGATCCAGAAATCC 60.601 60.000 15.80 4.18 43.90 3.01 R
2461 2695 0.748729 TTGACAAAACTTCCCGGCGT 60.749 50.000 6.01 0.00 0.00 5.68 R
3203 3437 5.192927 TCTTGTGGACACTTCAAACTCATT 58.807 37.500 3.91 0.00 0.00 2.57 R
3489 3723 3.152341 CCTGCATCTCCATAACCATTCC 58.848 50.000 0.00 0.00 0.00 3.01 R
4064 4316 2.957006 AGCAGTGTATAGGACCTTACCG 59.043 50.000 0.00 0.00 34.73 4.02 R
4857 5121 0.179073 ACCAACTAGCTGCATAGGCG 60.179 55.000 1.02 0.00 45.35 5.52 R
5444 5725 1.202758 ACTGCAATCCCGAGAAACACA 60.203 47.619 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.520204 CATTGAAGTAAGAATGTTTTGTTGTCT 57.480 29.630 0.00 0.00 0.00 3.41
33 34 8.909708 TGAAGTAAGAATGTTTTGTTGTCTTG 57.090 30.769 0.00 0.00 31.28 3.02
51 52 7.094508 TGTCTTGCAAAGTTTGAAGTTCATA 57.905 32.000 19.82 0.00 46.34 2.15
53 54 7.648908 TGTCTTGCAAAGTTTGAAGTTCATATG 59.351 33.333 19.82 0.00 46.34 1.78
153 154 4.363546 TTGGAGGGTAAGGATAAGAGGT 57.636 45.455 0.00 0.00 0.00 3.85
157 158 4.548669 GAGGGTAAGGATAAGAGGTGTCT 58.451 47.826 0.00 0.00 32.81 3.41
160 161 3.388350 GGTAAGGATAAGAGGTGTCTGGG 59.612 52.174 0.00 0.00 31.37 4.45
161 162 2.950990 AGGATAAGAGGTGTCTGGGT 57.049 50.000 0.00 0.00 31.37 4.51
171 172 4.767255 GTCTGGGTGCCCGAGCTG 62.767 72.222 0.00 0.00 40.80 4.24
205 206 3.561725 GTCCAGGTCAAGACAAGAGTTTG 59.438 47.826 2.29 0.00 40.24 2.93
211 212 3.378427 GTCAAGACAAGAGTTTGCAACCT 59.622 43.478 0.00 0.00 37.85 3.50
214 215 3.209410 AGACAAGAGTTTGCAACCTCAG 58.791 45.455 23.89 17.84 37.85 3.35
224 225 1.202794 TGCAACCTCAGACATGAAGCA 60.203 47.619 0.00 0.00 34.23 3.91
230 231 3.144506 CCTCAGACATGAAGCAGTGTTT 58.855 45.455 0.00 0.00 34.23 2.83
231 232 3.567164 CCTCAGACATGAAGCAGTGTTTT 59.433 43.478 0.00 0.00 34.23 2.43
266 267 3.625649 TGATGGATCGTTCAATGGTCA 57.374 42.857 0.00 0.00 0.00 4.02
288 289 0.739462 TCTGCCAATACTTCACGCCG 60.739 55.000 0.00 0.00 0.00 6.46
291 292 2.469516 CCAATACTTCACGCCGGGC 61.470 63.158 9.54 9.54 0.00 6.13
305 306 1.094785 CCGGGCCAAAATGACACTAG 58.905 55.000 4.39 0.00 0.00 2.57
312 313 4.280929 GGCCAAAATGACACTAGAAGGTTT 59.719 41.667 0.00 0.00 0.00 3.27
313 314 5.221441 GGCCAAAATGACACTAGAAGGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
315 316 6.200854 GCCAAAATGACACTAGAAGGTTTTTG 59.799 38.462 0.00 7.25 34.33 2.44
320 321 3.473625 ACACTAGAAGGTTTTTGGGACG 58.526 45.455 0.00 0.00 0.00 4.79
322 323 3.881089 CACTAGAAGGTTTTTGGGACGTT 59.119 43.478 0.00 0.00 0.00 3.99
341 342 4.225267 ACGTTTTCCCATCTTAGACCATCT 59.775 41.667 0.00 0.00 0.00 2.90
350 351 2.496070 TCTTAGACCATCTCCACGGTTG 59.504 50.000 0.00 0.00 34.99 3.77
351 352 0.535335 TAGACCATCTCCACGGTTGC 59.465 55.000 0.00 0.00 34.99 4.17
352 353 1.003839 GACCATCTCCACGGTTGCA 60.004 57.895 0.00 0.00 34.99 4.08
358 359 4.966787 TCCACGGTTGCAAGGGGC 62.967 66.667 0.00 0.00 45.13 5.80
374 375 2.528743 GGCGCCATGTCTCGTCATG 61.529 63.158 24.80 9.64 43.14 3.07
382 383 3.455327 CATGTCTCGTCATGAATCTGCT 58.545 45.455 0.00 0.00 45.41 4.24
390 391 2.426024 GTCATGAATCTGCTTGTGCCAT 59.574 45.455 0.00 0.00 38.71 4.40
391 392 2.686405 TCATGAATCTGCTTGTGCCATC 59.314 45.455 0.00 0.00 38.71 3.51
420 423 2.009774 GTGTGTCACACCATAGCATCC 58.990 52.381 23.17 0.00 43.05 3.51
437 440 3.825014 GCATCCATCATATTGTTGGAGCT 59.175 43.478 11.70 0.00 46.05 4.09
441 444 4.641541 TCCATCATATTGTTGGAGCTGTTG 59.358 41.667 0.00 0.00 40.31 3.33
458 461 2.559231 TGTTGTCCGCTACTACATGTCA 59.441 45.455 0.00 0.00 38.64 3.58
468 471 1.002366 CTACATGTCAGCGGTGAAGC 58.998 55.000 20.46 8.64 33.27 3.86
470 473 2.029288 CATGTCAGCGGTGAAGCGT 61.029 57.895 20.46 6.50 43.00 5.07
471 474 1.301716 ATGTCAGCGGTGAAGCGTT 60.302 52.632 20.46 0.00 43.00 4.84
473 476 2.664851 TCAGCGGTGAAGCGTTGG 60.665 61.111 16.20 1.98 43.00 3.77
489 492 3.400054 GGTGCGCCCCTTACTCCT 61.400 66.667 4.45 0.00 0.00 3.69
512 515 1.666011 CTCACACACTACCGCTGGT 59.334 57.895 5.58 5.58 40.16 4.00
514 517 1.667830 CACACACTACCGCTGGTGG 60.668 63.158 10.01 9.48 40.15 4.61
515 518 1.835267 ACACACTACCGCTGGTGGA 60.835 57.895 15.69 0.00 36.20 4.02
516 519 1.192146 ACACACTACCGCTGGTGGAT 61.192 55.000 15.69 3.43 36.20 3.41
518 521 1.815421 CACTACCGCTGGTGGATGC 60.815 63.158 15.69 0.00 36.20 3.91
533 682 1.067142 GGATGCTGTCGTCAACCACTA 60.067 52.381 0.00 0.00 0.00 2.74
547 696 8.981647 TCGTCAACCACTATTTCTTTACTAAAC 58.018 33.333 0.00 0.00 0.00 2.01
548 697 8.767085 CGTCAACCACTATTTCTTTACTAAACA 58.233 33.333 0.00 0.00 0.00 2.83
567 716 9.830975 ACTAAACATATTATCACTGCATACACA 57.169 29.630 0.00 0.00 0.00 3.72
570 719 8.907222 AACATATTATCACTGCATACACATCA 57.093 30.769 0.00 0.00 0.00 3.07
571 720 8.315391 ACATATTATCACTGCATACACATCAC 57.685 34.615 0.00 0.00 0.00 3.06
572 721 8.152898 ACATATTATCACTGCATACACATCACT 58.847 33.333 0.00 0.00 0.00 3.41
573 722 8.996271 CATATTATCACTGCATACACATCACTT 58.004 33.333 0.00 0.00 0.00 3.16
574 723 6.667007 TTATCACTGCATACACATCACTTG 57.333 37.500 0.00 0.00 0.00 3.16
575 724 4.270245 TCACTGCATACACATCACTTGA 57.730 40.909 0.00 0.00 0.00 3.02
576 725 4.835678 TCACTGCATACACATCACTTGAT 58.164 39.130 0.00 0.00 34.56 2.57
577 726 5.976458 TCACTGCATACACATCACTTGATA 58.024 37.500 0.00 0.00 32.63 2.15
578 727 6.585416 TCACTGCATACACATCACTTGATAT 58.415 36.000 0.00 0.00 32.63 1.63
579 728 6.703165 TCACTGCATACACATCACTTGATATC 59.297 38.462 0.00 0.00 32.63 1.63
580 729 6.480981 CACTGCATACACATCACTTGATATCA 59.519 38.462 0.00 0.00 32.63 2.15
670 854 8.641541 AGTACAATTTTTGTGATTGGATGAACT 58.358 29.630 3.22 0.00 45.03 3.01
671 855 7.718272 ACAATTTTTGTGATTGGATGAACTG 57.282 32.000 0.00 0.00 43.48 3.16
672 856 7.274447 ACAATTTTTGTGATTGGATGAACTGT 58.726 30.769 0.00 0.00 43.48 3.55
674 858 8.702438 CAATTTTTGTGATTGGATGAACTGTAC 58.298 33.333 0.00 0.00 32.24 2.90
678 862 4.754618 TGTGATTGGATGAACTGTACACAC 59.245 41.667 0.00 0.00 32.23 3.82
697 881 9.730420 GTACACACTTTTTACAGACAAATGATT 57.270 29.630 0.00 0.00 0.00 2.57
721 906 9.817809 ATTACATTTACTCTCTTTTATGAGCGA 57.182 29.630 0.00 0.00 34.29 4.93
776 961 1.722011 TTTTAGCAGGACTGTAGCGC 58.278 50.000 0.00 0.00 0.00 5.92
831 1017 5.163395 ACCTCTTTTAAACGGAAAATGCCAA 60.163 36.000 4.80 0.00 0.00 4.52
926 1141 0.899720 ATCGAACGAGCCCTTTACCA 59.100 50.000 2.94 0.00 0.00 3.25
1089 1310 2.040779 GGAATCTCCCCTCCCCGT 60.041 66.667 0.00 0.00 0.00 5.28
1198 1419 3.020261 GCGCGTTTAATCTGACGATTTC 58.980 45.455 8.43 0.00 41.53 2.17
1309 1530 0.033504 GATCCCGAGCGCCATCTTAA 59.966 55.000 2.29 0.00 0.00 1.85
1311 1532 1.887707 CCCGAGCGCCATCTTAACC 60.888 63.158 2.29 0.00 0.00 2.85
1470 1691 1.446272 GCAGCAGGTCGTGGAGTAC 60.446 63.158 0.00 0.00 0.00 2.73
1626 1847 0.250295 TCTTCCTCAACGGCAAGGTG 60.250 55.000 0.00 0.00 39.43 4.00
1716 1937 1.078848 GCGGCACCAGAAGATCTGT 60.079 57.895 0.00 0.00 42.80 3.41
1719 1940 0.908198 GGCACCAGAAGATCTGTCCT 59.092 55.000 0.00 0.00 42.80 3.85
1739 1960 4.003788 CAAGTCGGAGGCGGTGGT 62.004 66.667 0.00 0.00 36.95 4.16
1794 2021 0.107654 GTATGCTCCGGTTCTGCCTT 60.108 55.000 0.00 0.00 34.25 4.35
1832 2060 5.174579 GGTGTTGAGTTGAGTTTACTCGTAC 59.825 44.000 5.50 6.22 45.72 3.67
1841 2069 4.243270 GAGTTTACTCGTACCATGCTGTT 58.757 43.478 0.00 0.00 32.78 3.16
2207 2435 3.190118 GGCTTGAAAGTCTCCACAATCAG 59.810 47.826 0.00 0.00 0.00 2.90
2341 2572 1.569548 CCCCAGGAGTAGTACCTCTGA 59.430 57.143 17.24 0.00 35.35 3.27
2437 2671 4.467795 CCTGAAGAAACAGAGGACCTCATA 59.532 45.833 23.60 0.00 39.94 2.15
2461 2695 5.811399 ACGAACATTTCAACTGACAAGAA 57.189 34.783 0.00 0.00 0.00 2.52
3057 3291 4.119862 TCGAGGCAAGCTATACAACATTC 58.880 43.478 0.00 0.00 0.00 2.67
3090 3324 7.095397 TGGACGACATCTTAAATAGTGTTGTTG 60.095 37.037 0.00 0.00 38.84 3.33
3203 3437 4.276678 CAGCTTCTGGAAGTCATTTCACAA 59.723 41.667 11.32 0.00 40.45 3.33
3489 3723 9.309516 CATCAAATGGTAATGGAGAATTTTCTG 57.690 33.333 0.00 0.00 37.73 3.02
3711 3945 0.543277 CCCTACAGATCTGCCAAGCA 59.457 55.000 22.83 0.59 36.92 3.91
4064 4316 4.742659 GCTCGAGACTGGATGAGATAAAAC 59.257 45.833 18.75 0.00 0.00 2.43
4089 4341 3.336509 AGGTCCTATACACTGCTCCAT 57.663 47.619 0.00 0.00 0.00 3.41
4128 4380 5.420725 TGGTAGTGATGCTGTGATTAAGT 57.579 39.130 0.00 0.00 0.00 2.24
4147 4399 5.975410 AAGTTCGTGAGAGTTTCTTCTTG 57.025 39.130 0.00 0.00 43.69 3.02
4159 4411 4.462483 AGTTTCTTCTTGTTTGCCAGACAA 59.538 37.500 0.53 0.53 35.81 3.18
4415 4667 5.366460 CACTTGGTCTCTTCATGCATCTAT 58.634 41.667 0.00 0.00 0.00 1.98
4620 4883 0.182775 ATTCTCGCCCCAATGTACCC 59.817 55.000 0.00 0.00 0.00 3.69
4634 4897 0.105964 GTACCCGTGCCATATGCTGA 59.894 55.000 0.00 0.00 42.00 4.26
4655 4918 6.025749 TGATACAGTTCTGAACGATGAAGT 57.974 37.500 14.35 9.87 36.23 3.01
4735 4998 4.240103 CAGCCCCGCCGATGATGA 62.240 66.667 0.00 0.00 0.00 2.92
4736 4999 3.244580 AGCCCCGCCGATGATGAT 61.245 61.111 0.00 0.00 0.00 2.45
4737 5000 3.052082 GCCCCGCCGATGATGATG 61.052 66.667 0.00 0.00 0.00 3.07
4789 5052 1.072331 GCTTCCTTTCCTGTGGAGACA 59.928 52.381 0.00 0.00 33.46 3.41
4855 5119 1.868251 GTCGCTGTAAGACGCCTCG 60.868 63.158 0.00 0.00 34.07 4.63
4857 5121 2.886124 GCTGTAAGACGCCTCGGC 60.886 66.667 0.00 0.00 34.07 5.54
4873 5137 1.227674 GGCGCCTATGCAGCTAGTT 60.228 57.895 22.15 0.00 37.25 2.24
4899 5163 5.758296 GTGGAGTTGTGAGTTTCTGAATGTA 59.242 40.000 0.00 0.00 0.00 2.29
4974 5250 3.141522 TTGCTGCTTGGCTGTGTGC 62.142 57.895 0.00 0.00 41.94 4.57
4976 5252 4.695231 CTGCTTGGCTGTGTGCGC 62.695 66.667 0.00 0.00 44.05 6.09
5044 5320 1.472728 CCCATCTAGTTCCCGAAACCG 60.473 57.143 0.00 0.00 38.76 4.44
5045 5321 1.479323 CCATCTAGTTCCCGAAACCGA 59.521 52.381 0.00 0.00 38.76 4.69
5046 5322 2.093869 CCATCTAGTTCCCGAAACCGAA 60.094 50.000 0.00 0.00 38.76 4.30
5047 5323 3.187700 CATCTAGTTCCCGAAACCGAAG 58.812 50.000 0.00 0.00 38.76 3.79
5049 5325 0.971386 TAGTTCCCGAAACCGAAGCT 59.029 50.000 0.00 0.00 38.76 3.74
5052 5328 2.145536 GTTCCCGAAACCGAAGCTAAA 58.854 47.619 0.00 0.00 31.20 1.85
5053 5329 2.088950 TCCCGAAACCGAAGCTAAAG 57.911 50.000 0.00 0.00 0.00 1.85
5054 5330 0.446616 CCCGAAACCGAAGCTAAAGC 59.553 55.000 0.00 0.00 42.49 3.51
5055 5331 0.446616 CCGAAACCGAAGCTAAAGCC 59.553 55.000 0.00 0.00 43.38 4.35
5056 5332 0.446616 CGAAACCGAAGCTAAAGCCC 59.553 55.000 0.00 0.00 43.38 5.19
5059 5335 1.751437 AACCGAAGCTAAAGCCCATC 58.249 50.000 0.00 0.00 43.38 3.51
5061 5337 2.116238 ACCGAAGCTAAAGCCCATCTA 58.884 47.619 0.00 0.00 43.38 1.98
5062 5338 2.103263 ACCGAAGCTAAAGCCCATCTAG 59.897 50.000 0.00 0.00 43.38 2.43
5063 5339 2.103263 CCGAAGCTAAAGCCCATCTAGT 59.897 50.000 0.00 0.00 43.38 2.57
5064 5340 3.432326 CCGAAGCTAAAGCCCATCTAGTT 60.432 47.826 0.00 0.00 43.38 2.24
5065 5341 3.804873 CGAAGCTAAAGCCCATCTAGTTC 59.195 47.826 0.00 0.00 43.38 3.01
5066 5342 3.847671 AGCTAAAGCCCATCTAGTTCC 57.152 47.619 0.00 0.00 43.38 3.62
5067 5343 2.439880 AGCTAAAGCCCATCTAGTTCCC 59.560 50.000 0.00 0.00 43.38 3.97
5068 5344 2.807108 GCTAAAGCCCATCTAGTTCCCG 60.807 54.545 0.00 0.00 34.31 5.14
5069 5345 1.580059 AAAGCCCATCTAGTTCCCGA 58.420 50.000 0.00 0.00 0.00 5.14
5070 5346 1.580059 AAGCCCATCTAGTTCCCGAA 58.420 50.000 0.00 0.00 0.00 4.30
5071 5347 1.580059 AGCCCATCTAGTTCCCGAAA 58.420 50.000 0.00 0.00 0.00 3.46
5073 5349 1.746171 GCCCATCTAGTTCCCGAAACC 60.746 57.143 0.00 0.00 38.76 3.27
5117 5393 0.106116 ACATCCGACCCCTACTCCTC 60.106 60.000 0.00 0.00 0.00 3.71
5118 5394 1.150992 ATCCGACCCCTACTCCTCG 59.849 63.158 0.00 0.00 0.00 4.63
5121 5397 2.178890 CGACCCCTACTCCTCGACG 61.179 68.421 0.00 0.00 0.00 5.12
5134 5411 3.803082 CGACGGCAATGGCAGGTG 61.803 66.667 7.75 0.00 43.71 4.00
5154 5431 2.405892 GCAGCGGGCATAAAATACAG 57.594 50.000 0.00 0.00 43.97 2.74
5155 5432 1.676006 GCAGCGGGCATAAAATACAGT 59.324 47.619 0.00 0.00 43.97 3.55
5157 5434 3.206150 CAGCGGGCATAAAATACAGTCT 58.794 45.455 0.00 0.00 0.00 3.24
5158 5435 3.248602 CAGCGGGCATAAAATACAGTCTC 59.751 47.826 0.00 0.00 0.00 3.36
5161 5438 3.202906 GGGCATAAAATACAGTCTCGCA 58.797 45.455 0.00 0.00 0.00 5.10
5231 5512 4.647424 ACTTGCTTCTATCTCGAGGAAG 57.353 45.455 19.65 19.65 42.38 3.46
5266 5547 1.172812 GCACAGGGGGAGAAACACAC 61.173 60.000 0.00 0.00 0.00 3.82
5370 5651 1.335964 CCGTGTCATGAGACTCAACGT 60.336 52.381 19.64 0.00 45.20 3.99
5388 5669 4.096003 CGGGCATGGTTCGGAGGT 62.096 66.667 0.00 0.00 0.00 3.85
5395 5676 0.541863 ATGGTTCGGAGGTCATGGAC 59.458 55.000 0.00 0.00 0.00 4.02
5425 5706 2.746362 AGGTAGACTCGTCTGTAAACCG 59.254 50.000 9.73 0.00 38.82 4.44
5430 5711 1.000938 ACTCGTCTGTAAACCGTCCAC 60.001 52.381 0.00 0.00 0.00 4.02
5444 5725 0.458669 GTCCACGTCCATGGTATCGT 59.541 55.000 19.99 19.99 40.95 3.73
5460 5741 1.790755 TCGTGTGTTTCTCGGGATTG 58.209 50.000 0.00 0.00 34.40 2.67
5502 5783 2.358737 CACCGGTCACTTGGCTCC 60.359 66.667 2.59 0.00 0.00 4.70
5631 5918 1.876497 TACACTAACCGGACCCGCAC 61.876 60.000 9.46 0.00 38.24 5.34
5696 5983 5.593909 TCTGACTTTGCCAATTTCAAGAAGA 59.406 36.000 0.00 0.00 0.00 2.87
5702 5989 3.384146 TGCCAATTTCAAGAAGAAGCACA 59.616 39.130 0.00 0.00 37.57 4.57
5957 6250 5.532664 AATAGTCTCCACGGGATTACTTC 57.467 43.478 10.97 0.00 32.50 3.01
6046 6346 3.007506 TCGTTTTGGATTAGTGAGGCTGA 59.992 43.478 0.00 0.00 0.00 4.26
6068 6368 8.533153 GCTGATAGTTTTCAAAGTCGATAGTAC 58.467 37.037 0.00 0.00 37.40 2.73
6074 6374 7.441458 AGTTTTCAAAGTCGATAGTACTGCTTT 59.559 33.333 5.39 5.67 37.40 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.763528 ACAACATATGAACTTCAAACTTTGCAA 59.236 29.630 10.38 0.00 0.00 4.08
33 34 7.698836 ACAACATATGAACTTCAAACTTTGC 57.301 32.000 10.38 0.00 0.00 3.68
87 88 9.199982 GCTACACAACTAACTTACTACATGAAA 57.800 33.333 0.00 0.00 0.00 2.69
90 91 7.201325 CGTGCTACACAACTAACTTACTACATG 60.201 40.741 0.00 0.00 33.40 3.21
104 105 2.363788 TGAGATCCGTGCTACACAAC 57.636 50.000 0.00 0.00 33.40 3.32
182 183 2.398588 ACTCTTGTCTTGACCTGGACA 58.601 47.619 0.00 0.00 40.17 4.02
205 206 1.467734 CTGCTTCATGTCTGAGGTTGC 59.532 52.381 0.00 0.00 31.38 4.17
211 212 6.486320 TGATTAAAACACTGCTTCATGTCTGA 59.514 34.615 0.00 0.00 0.00 3.27
214 215 5.570589 GCTGATTAAAACACTGCTTCATGTC 59.429 40.000 0.00 0.00 0.00 3.06
224 225 6.108687 TCATCTCGATGCTGATTAAAACACT 58.891 36.000 2.05 0.00 38.65 3.55
255 256 2.161855 TGGCAGATGTGACCATTGAAC 58.838 47.619 0.00 0.00 0.00 3.18
266 267 2.009774 GCGTGAAGTATTGGCAGATGT 58.990 47.619 0.00 0.00 0.00 3.06
288 289 2.755103 CCTTCTAGTGTCATTTTGGCCC 59.245 50.000 0.00 0.00 0.00 5.80
291 292 6.701400 CCAAAAACCTTCTAGTGTCATTTTGG 59.299 38.462 19.91 19.91 44.99 3.28
305 306 3.450578 GGAAAACGTCCCAAAAACCTTC 58.549 45.455 0.00 0.00 41.10 3.46
320 321 5.126779 GGAGATGGTCTAAGATGGGAAAAC 58.873 45.833 0.00 0.00 0.00 2.43
322 323 4.164221 GTGGAGATGGTCTAAGATGGGAAA 59.836 45.833 0.00 0.00 0.00 3.13
341 342 4.966787 GCCCCTTGCAACCGTGGA 62.967 66.667 4.08 0.00 40.77 4.02
351 352 2.825836 GAGACATGGCGCCCCTTG 60.826 66.667 26.77 20.85 40.97 3.61
352 353 4.473520 CGAGACATGGCGCCCCTT 62.474 66.667 26.77 7.34 0.00 3.95
358 359 1.524355 GATTCATGACGAGACATGGCG 59.476 52.381 13.64 0.04 45.10 5.69
382 383 1.228521 CCAGTGTGGGATGGCACAA 60.229 57.895 0.00 0.00 36.08 3.33
412 415 5.651139 GCTCCAACAATATGATGGATGCTAT 59.349 40.000 9.42 0.00 46.20 2.97
417 420 5.057843 ACAGCTCCAACAATATGATGGAT 57.942 39.130 9.42 0.00 46.20 3.41
420 423 5.449588 GGACAACAGCTCCAACAATATGATG 60.450 44.000 0.00 0.00 0.00 3.07
437 440 2.559231 TGACATGTAGTAGCGGACAACA 59.441 45.455 0.00 0.00 0.00 3.33
441 444 1.841450 GCTGACATGTAGTAGCGGAC 58.159 55.000 11.87 0.00 0.00 4.79
458 461 2.972505 CACCAACGCTTCACCGCT 60.973 61.111 0.00 0.00 0.00 5.52
468 471 3.428282 GTAAGGGGCGCACCAACG 61.428 66.667 34.08 0.00 42.91 4.10
470 473 2.349755 GAGTAAGGGGCGCACCAA 59.650 61.111 34.08 16.71 42.91 3.67
471 474 3.712907 GGAGTAAGGGGCGCACCA 61.713 66.667 34.08 8.45 42.91 4.17
473 476 2.187163 GAGGAGTAAGGGGCGCAC 59.813 66.667 10.83 4.83 0.00 5.34
489 492 1.812686 GCGGTAGTGTGTGAGGGTGA 61.813 60.000 0.00 0.00 0.00 4.02
512 515 0.602638 GTGGTTGACGACAGCATCCA 60.603 55.000 4.06 2.36 33.84 3.41
514 517 2.363788 TAGTGGTTGACGACAGCATC 57.636 50.000 4.06 0.00 0.00 3.91
515 518 3.334583 AATAGTGGTTGACGACAGCAT 57.665 42.857 4.06 0.00 0.00 3.79
516 519 2.831685 AATAGTGGTTGACGACAGCA 57.168 45.000 4.06 0.00 0.00 4.41
518 521 5.924475 AAAGAAATAGTGGTTGACGACAG 57.076 39.130 0.00 0.00 0.00 3.51
547 696 8.543862 AGTGATGTGTATGCAGTGATAATATG 57.456 34.615 0.00 0.00 0.00 1.78
548 697 8.996271 CAAGTGATGTGTATGCAGTGATAATAT 58.004 33.333 0.00 0.00 0.00 1.28
553 702 4.835678 TCAAGTGATGTGTATGCAGTGAT 58.164 39.130 0.00 0.00 0.00 3.06
569 718 7.388951 GCGACACACGTCTTGATATCAAGTG 62.389 48.000 33.87 28.72 45.87 3.16
570 719 5.431785 GCGACACACGTCTTGATATCAAGT 61.432 45.833 33.87 20.21 45.87 3.16
571 720 3.000674 GCGACACACGTCTTGATATCAAG 60.001 47.826 31.42 31.42 46.42 3.02
572 721 2.921121 GCGACACACGTCTTGATATCAA 59.079 45.455 17.07 17.07 44.60 2.57
573 722 2.094957 TGCGACACACGTCTTGATATCA 60.095 45.455 0.00 0.00 44.60 2.15
574 723 2.526077 TGCGACACACGTCTTGATATC 58.474 47.619 0.00 0.00 44.60 1.63
575 724 2.647529 TGCGACACACGTCTTGATAT 57.352 45.000 0.65 0.00 44.60 1.63
576 725 2.425578 TTGCGACACACGTCTTGATA 57.574 45.000 0.65 0.00 44.60 2.15
577 726 1.577468 TTTGCGACACACGTCTTGAT 58.423 45.000 0.65 0.00 44.60 2.57
578 727 1.577468 ATTTGCGACACACGTCTTGA 58.423 45.000 0.65 0.00 44.60 3.02
579 728 2.219903 TGTATTTGCGACACACGTCTTG 59.780 45.455 0.00 0.00 44.60 3.02
580 729 2.475818 TGTATTTGCGACACACGTCTT 58.524 42.857 0.00 0.00 44.60 3.01
591 740 2.746904 TCCAAGTGTCCATGTATTTGCG 59.253 45.455 0.00 0.00 0.00 4.85
594 743 6.916360 AAATGTCCAAGTGTCCATGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
656 839 4.997395 AGTGTGTACAGTTCATCCAATCAC 59.003 41.667 0.00 0.00 0.00 3.06
670 854 8.270080 TCATTTGTCTGTAAAAAGTGTGTACA 57.730 30.769 0.00 0.00 0.00 2.90
671 855 9.730420 AATCATTTGTCTGTAAAAAGTGTGTAC 57.270 29.630 0.00 0.00 0.00 2.90
674 858 9.729023 TGTAATCATTTGTCTGTAAAAAGTGTG 57.271 29.630 0.00 0.00 0.00 3.82
697 881 7.921214 CCTCGCTCATAAAAGAGAGTAAATGTA 59.079 37.037 4.38 0.00 40.41 2.29
714 899 7.201732 CCAAAGTAAAATGTTATCCTCGCTCAT 60.202 37.037 0.00 0.00 0.00 2.90
720 905 7.939784 ACTCCCAAAGTAAAATGTTATCCTC 57.060 36.000 0.00 0.00 36.07 3.71
761 946 0.250295 TTTTGCGCTACAGTCCTGCT 60.250 50.000 9.73 0.00 0.00 4.24
803 988 6.477360 GCATTTTCCGTTTAAAAGAGGTTTGA 59.523 34.615 2.43 0.00 32.20 2.69
808 994 4.877282 TGGCATTTTCCGTTTAAAAGAGG 58.123 39.130 2.43 1.38 32.20 3.69
810 996 7.611213 TTTTTGGCATTTTCCGTTTAAAAGA 57.389 28.000 2.43 0.00 32.20 2.52
839 1025 5.532557 TGTACTGCATATCATCTCCTTTCG 58.467 41.667 0.00 0.00 0.00 3.46
926 1141 0.827507 ATCGCTTTTGGTGTGGGCTT 60.828 50.000 0.00 0.00 0.00 4.35
1275 1496 1.502163 GGATCCAGAAATCCGCGCAG 61.502 60.000 8.75 0.00 36.14 5.18
1281 1502 0.601311 CGCTCGGGATCCAGAAATCC 60.601 60.000 15.80 4.18 43.90 3.01
1309 1530 1.531149 CGAAAACACAAGATCTGCGGT 59.469 47.619 0.00 0.00 0.00 5.68
1311 1532 2.949714 ACGAAAACACAAGATCTGCG 57.050 45.000 0.00 0.00 0.00 5.18
1470 1691 2.765807 ACCTCATGCTCCTCGGGG 60.766 66.667 0.00 0.00 0.00 5.73
1736 1957 2.067932 CTTCTGTTGCCCCTCCACCA 62.068 60.000 0.00 0.00 0.00 4.17
1739 1960 0.846427 ATCCTTCTGTTGCCCCTCCA 60.846 55.000 0.00 0.00 0.00 3.86
1761 1988 3.501445 GGAGCATACCGTACGAGAAGTAT 59.499 47.826 18.76 12.55 37.69 2.12
1794 2021 2.094130 TCAACACCGTGAACACACTACA 60.094 45.455 5.28 0.00 32.98 2.74
1832 2060 3.609853 TCCTAAGCTACAAACAGCATGG 58.390 45.455 0.00 0.00 44.35 3.66
1841 2069 3.260632 TGTGTGCAGATCCTAAGCTACAA 59.739 43.478 0.00 0.00 0.00 2.41
1978 2206 4.084328 GCGTCTCCGAAATAATCTGATTGG 60.084 45.833 13.01 5.38 35.63 3.16
2207 2435 5.107875 CGAAGGCTCAAACAAAAACTTATGC 60.108 40.000 0.00 0.00 0.00 3.14
2329 2560 5.189659 GATGGTGTCATCAGAGGTACTAC 57.810 47.826 0.00 0.00 46.74 2.73
2341 2572 1.003580 GGACTGTGTGGATGGTGTCAT 59.996 52.381 0.00 0.00 36.09 3.06
2437 2671 7.352739 GTTCTTGTCAGTTGAAATGTTCGTAT 58.647 34.615 0.00 0.00 0.00 3.06
2461 2695 0.748729 TTGACAAAACTTCCCGGCGT 60.749 50.000 6.01 0.00 0.00 5.68
3203 3437 5.192927 TCTTGTGGACACTTCAAACTCATT 58.807 37.500 3.91 0.00 0.00 2.57
3489 3723 3.152341 CCTGCATCTCCATAACCATTCC 58.848 50.000 0.00 0.00 0.00 3.01
4064 4316 2.957006 AGCAGTGTATAGGACCTTACCG 59.043 50.000 0.00 0.00 34.73 4.02
4089 4341 5.833667 CACTACCAGGTCTATGATAGTGGAA 59.166 44.000 12.85 0.00 37.13 3.53
4128 4380 5.447279 GCAAACAAGAAGAAACTCTCACGAA 60.447 40.000 0.00 0.00 0.00 3.85
4147 4399 7.593825 ACAGAAAATATAGTTGTCTGGCAAAC 58.406 34.615 19.57 0.00 40.02 2.93
4225 4477 8.507249 CAGAAGGTTGTAGGTTTTAAGATTCTG 58.493 37.037 0.00 0.00 34.67 3.02
4415 4667 3.049206 GCGTGCAAAGAAACATTAAGCA 58.951 40.909 0.00 0.00 0.00 3.91
4420 4672 2.869233 AGTGCGTGCAAAGAAACATT 57.131 40.000 0.00 0.00 0.00 2.71
4428 4680 3.459145 TCTAGTACAAAGTGCGTGCAAA 58.541 40.909 0.00 0.00 0.00 3.68
4526 4789 2.954989 CAGAGCACTGATCTACTAGGCA 59.045 50.000 5.03 0.00 46.03 4.75
4634 4897 5.120830 GCAACTTCATCGTTCAGAACTGTAT 59.879 40.000 11.60 0.00 0.00 2.29
4655 4918 2.102070 ACAAATCATACGTCCGGCAA 57.898 45.000 0.00 0.00 0.00 4.52
4789 5052 4.695217 AAAATTACACGCCGATGAACAT 57.305 36.364 0.00 0.00 0.00 2.71
4855 5119 1.227674 AACTAGCTGCATAGGCGCC 60.228 57.895 21.89 21.89 45.35 6.53
4857 5121 0.179073 ACCAACTAGCTGCATAGGCG 60.179 55.000 1.02 0.00 45.35 5.52
4873 5137 2.503765 TCAGAAACTCACAACTCCACCA 59.496 45.455 0.00 0.00 0.00 4.17
4899 5163 5.134339 ACATCAATACACCCATATTCCCAGT 59.866 40.000 0.00 0.00 0.00 4.00
4999 5275 2.056906 ATTATCAGACTGGGCCGGGC 62.057 60.000 22.00 22.00 0.00 6.13
5002 5278 3.251004 GCTTTAATTATCAGACTGGGCCG 59.749 47.826 1.81 0.00 0.00 6.13
5003 5279 3.570125 GGCTTTAATTATCAGACTGGGCC 59.430 47.826 1.81 0.00 0.00 5.80
5015 5291 5.367352 TCGGGAACTAGATGGGCTTTAATTA 59.633 40.000 0.00 0.00 0.00 1.40
5044 5320 4.130857 GGAACTAGATGGGCTTTAGCTTC 58.869 47.826 0.00 0.00 41.70 3.86
5045 5321 3.117851 GGGAACTAGATGGGCTTTAGCTT 60.118 47.826 0.00 0.00 41.70 3.74
5046 5322 2.439880 GGGAACTAGATGGGCTTTAGCT 59.560 50.000 0.00 0.00 41.70 3.32
5047 5323 2.807108 CGGGAACTAGATGGGCTTTAGC 60.807 54.545 0.00 0.00 41.14 3.09
5049 5325 2.754465 TCGGGAACTAGATGGGCTTTA 58.246 47.619 0.00 0.00 0.00 1.85
5052 5328 1.209747 GTTTCGGGAACTAGATGGGCT 59.790 52.381 0.00 0.00 35.31 5.19
5053 5329 1.664873 GTTTCGGGAACTAGATGGGC 58.335 55.000 0.00 0.00 35.31 5.36
5054 5330 1.472728 CGGTTTCGGGAACTAGATGGG 60.473 57.143 0.00 0.00 38.35 4.00
5055 5331 1.479323 TCGGTTTCGGGAACTAGATGG 59.521 52.381 0.00 0.00 38.35 3.51
5056 5332 2.953466 TCGGTTTCGGGAACTAGATG 57.047 50.000 0.00 0.00 38.35 2.90
5059 5335 1.356938 GCTTCGGTTTCGGGAACTAG 58.643 55.000 0.00 0.00 38.35 2.57
5061 5337 1.302271 GGCTTCGGTTTCGGGAACT 60.302 57.895 0.00 0.00 38.35 3.01
5062 5338 2.330372 GGGCTTCGGTTTCGGGAAC 61.330 63.158 0.00 0.00 37.53 3.62
5063 5339 2.032987 GGGCTTCGGTTTCGGGAA 59.967 61.111 0.00 0.00 36.95 3.97
5064 5340 3.243053 TGGGCTTCGGTTTCGGGA 61.243 61.111 0.00 0.00 36.95 5.14
5065 5341 2.175035 TACTGGGCTTCGGTTTCGGG 62.175 60.000 0.00 0.00 36.22 5.14
5066 5342 0.739813 CTACTGGGCTTCGGTTTCGG 60.740 60.000 0.00 0.00 36.22 4.30
5067 5343 0.739813 CCTACTGGGCTTCGGTTTCG 60.740 60.000 0.00 0.00 36.22 3.46
5068 5344 0.323957 ACCTACTGGGCTTCGGTTTC 59.676 55.000 0.00 0.00 39.10 2.78
5069 5345 0.769247 AACCTACTGGGCTTCGGTTT 59.231 50.000 0.00 0.00 34.49 3.27
5070 5346 0.769247 AAACCTACTGGGCTTCGGTT 59.231 50.000 0.00 0.00 39.50 4.44
5071 5347 0.323957 GAAACCTACTGGGCTTCGGT 59.676 55.000 0.00 0.00 39.10 4.69
5073 5349 0.739813 CCGAAACCTACTGGGCTTCG 60.740 60.000 9.41 9.41 44.88 3.79
5117 5393 3.803082 CACCTGCCATTGCCGTCG 61.803 66.667 0.00 0.00 36.33 5.12
5118 5394 3.443045 CCACCTGCCATTGCCGTC 61.443 66.667 0.00 0.00 36.33 4.79
5121 5397 3.766691 CTGCCACCTGCCATTGCC 61.767 66.667 0.00 0.00 40.16 4.52
5134 5411 1.001378 CTGTATTTTATGCCCGCTGCC 60.001 52.381 0.00 0.00 40.16 4.85
5161 5438 4.796231 CTTCCTAGGCGCGTGCGT 62.796 66.667 20.77 20.77 44.10 5.24
5231 5512 2.335011 GCGTGGTGCACCCTTTTC 59.665 61.111 32.62 15.92 45.45 2.29
5266 5547 3.065371 GGCACGAGTTCATAATTCCTTGG 59.935 47.826 0.00 0.00 0.00 3.61
5370 5651 3.781307 CCTCCGAACCATGCCCGA 61.781 66.667 0.00 0.00 0.00 5.14
5395 5676 1.570475 GAGTCTACCTCGGATCGCG 59.430 63.158 0.00 0.00 0.00 5.87
5420 5701 1.302192 CCATGGACGTGGACGGTTT 60.302 57.895 5.56 0.00 44.95 3.27
5425 5706 0.458669 ACGATACCATGGACGTGGAC 59.541 55.000 21.47 7.18 42.02 4.02
5430 5711 2.004583 AACACACGATACCATGGACG 57.995 50.000 21.47 21.46 0.00 4.79
5444 5725 1.202758 ACTGCAATCCCGAGAAACACA 60.203 47.619 0.00 0.00 0.00 3.72
5631 5918 1.440893 CTGGGAGAGCAGATGACCG 59.559 63.158 0.00 0.00 0.00 4.79
5696 5983 1.366319 AGGATCTTGGAGGTGTGCTT 58.634 50.000 0.00 0.00 0.00 3.91
5702 5989 1.290134 GGGTCAAGGATCTTGGAGGT 58.710 55.000 7.67 0.00 0.00 3.85
6046 6346 8.251721 AGCAGTACTATCGACTTTGAAAACTAT 58.748 33.333 0.00 0.00 0.00 2.12
6086 6386 9.634021 TGTCCAACCTATGTATATATGCAAAAA 57.366 29.630 7.62 0.00 0.00 1.94
6087 6387 9.806448 ATGTCCAACCTATGTATATATGCAAAA 57.194 29.630 7.62 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.