Multiple sequence alignment - TraesCS2D01G476400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G476400 chr2D 100.000 2084 0 0 1 2084 578887535 578889618 0.000000e+00 3849.0
1 TraesCS2D01G476400 chr2D 100.000 73 0 0 2501 2573 578890035 578890107 4.470000e-28 135.0
2 TraesCS2D01G476400 chr2B 86.299 978 83 15 641 1576 695732033 695733001 0.000000e+00 1016.0
3 TraesCS2D01G476400 chr2B 85.123 1015 101 28 597 1576 695688360 695689359 0.000000e+00 992.0
4 TraesCS2D01G476400 chr2B 85.714 980 86 22 642 1576 695683991 695684961 0.000000e+00 985.0
5 TraesCS2D01G476400 chr2B 85.219 981 89 21 641 1576 695692687 695693656 0.000000e+00 957.0
6 TraesCS2D01G476400 chr2B 98.246 57 1 0 1 57 26723850 26723794 1.630000e-17 100.0
7 TraesCS2D01G476400 chr2A 85.958 997 76 24 641 1578 716301194 716302185 0.000000e+00 1007.0
8 TraesCS2D01G476400 chr2A 92.094 721 48 5 1356 2076 716443455 716444166 0.000000e+00 1007.0
9 TraesCS2D01G476400 chr2A 85.930 995 76 24 641 1576 716252651 716253640 0.000000e+00 1003.0
10 TraesCS2D01G476400 chr2A 85.858 997 77 24 641 1578 716424493 716425484 0.000000e+00 1002.0
11 TraesCS2D01G476400 chr2A 85.757 997 78 22 641 1578 716340962 716341953 0.000000e+00 996.0
12 TraesCS2D01G476400 chr2A 85.657 997 79 24 641 1578 716393444 716394435 0.000000e+00 990.0
13 TraesCS2D01G476400 chr2A 87.839 847 75 10 757 1576 716247837 716248682 0.000000e+00 968.0
14 TraesCS2D01G476400 chr2A 86.957 92 12 0 485 576 534621254 534621345 1.260000e-18 104.0
15 TraesCS2D01G476400 chr2A 90.541 74 6 1 2501 2573 716444216 716444289 2.110000e-16 97.1
16 TraesCS2D01G476400 chr6D 98.507 67 1 0 1 67 38859192 38859126 4.500000e-23 119.0
17 TraesCS2D01G476400 chr5B 91.667 84 7 0 492 575 337833446 337833363 1.620000e-22 117.0
18 TraesCS2D01G476400 chr5B 95.833 48 2 0 10 57 468635450 468635403 7.630000e-11 78.7
19 TraesCS2D01G476400 chr5B 90.909 55 3 2 1851 1904 579593579 579593526 3.550000e-09 73.1
20 TraesCS2D01G476400 chr6A 88.764 89 10 0 485 573 59813939 59814027 2.710000e-20 110.0
21 TraesCS2D01G476400 chr6A 83.544 79 12 1 1850 1927 260486314 260486236 3.550000e-09 73.1
22 TraesCS2D01G476400 chrUn 93.151 73 5 0 1 73 1902885 1902957 9.740000e-20 108.0
23 TraesCS2D01G476400 chrUn 93.151 73 5 0 1 73 1903549 1903621 9.740000e-20 108.0
24 TraesCS2D01G476400 chr6B 89.157 83 9 0 494 576 414341568 414341486 1.260000e-18 104.0
25 TraesCS2D01G476400 chr6B 87.654 81 10 0 494 574 154596932 154596852 7.580000e-16 95.3
26 TraesCS2D01G476400 chr6B 88.136 59 5 2 1842 1899 34198305 34198362 4.590000e-08 69.4
27 TraesCS2D01G476400 chr1B 86.517 89 12 0 485 573 133515607 133515695 5.860000e-17 99.0
28 TraesCS2D01G476400 chr4A 93.548 62 4 0 1 62 524183187 524183126 2.730000e-15 93.5
29 TraesCS2D01G476400 chr4A 94.828 58 3 0 1 58 501482219 501482276 9.800000e-15 91.6
30 TraesCS2D01G476400 chr3B 85.556 90 11 1 485 574 733223534 733223621 2.730000e-15 93.5
31 TraesCS2D01G476400 chr3B 84.615 91 14 0 485 575 164926579 164926669 9.800000e-15 91.6
32 TraesCS2D01G476400 chr3B 91.379 58 3 2 1851 1907 823097334 823097390 7.630000e-11 78.7
33 TraesCS2D01G476400 chr3B 79.592 98 16 4 1832 1927 654069667 654069762 1.650000e-07 67.6
34 TraesCS2D01G476400 chr7B 96.364 55 2 0 1 55 244629588 244629642 9.800000e-15 91.6
35 TraesCS2D01G476400 chr7B 89.831 59 6 0 1841 1899 64664960 64665018 2.750000e-10 76.8
36 TraesCS2D01G476400 chr7B 90.909 55 3 2 1851 1904 7841077 7841024 3.550000e-09 73.1
37 TraesCS2D01G476400 chr3A 84.615 91 14 0 485 575 560778507 560778597 9.800000e-15 91.6
38 TraesCS2D01G476400 chr4D 90.000 60 3 3 1851 1909 72124872 72124929 9.870000e-10 75.0
39 TraesCS2D01G476400 chr1A 89.583 48 4 1 10 56 291969068 291969115 2.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G476400 chr2D 578887535 578890107 2572 False 1992.00 3849 100.0000 1 2573 2 chr2D.!!$F1 2572
1 TraesCS2D01G476400 chr2B 695732033 695733001 968 False 1016.00 1016 86.2990 641 1576 1 chr2B.!!$F1 935
2 TraesCS2D01G476400 chr2B 695683991 695693656 9665 False 978.00 992 85.3520 597 1576 3 chr2B.!!$F2 979
3 TraesCS2D01G476400 chr2A 716301194 716302185 991 False 1007.00 1007 85.9580 641 1578 1 chr2A.!!$F2 937
4 TraesCS2D01G476400 chr2A 716424493 716425484 991 False 1002.00 1002 85.8580 641 1578 1 chr2A.!!$F5 937
5 TraesCS2D01G476400 chr2A 716340962 716341953 991 False 996.00 996 85.7570 641 1578 1 chr2A.!!$F3 937
6 TraesCS2D01G476400 chr2A 716393444 716394435 991 False 990.00 990 85.6570 641 1578 1 chr2A.!!$F4 937
7 TraesCS2D01G476400 chr2A 716247837 716253640 5803 False 985.50 1003 86.8845 641 1576 2 chr2A.!!$F6 935
8 TraesCS2D01G476400 chr2A 716443455 716444289 834 False 552.05 1007 91.3175 1356 2573 2 chr2A.!!$F7 1217

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.033504 CACTAGGTGAAGTGGCACGT 59.966 55.0 12.71 9.31 42.63 4.49 F
1320 9969 0.032615 AGAGGCTCGAGTTCCTGGAT 60.033 55.0 15.44 0.38 31.71 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 14367 0.179097 CTTCACTAAGCTCCCTCCGC 60.179 60.0 0.0 0.0 0.0 5.54 R
2510 15456 0.875908 CCCATGTGATGCTACGACGG 60.876 60.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.800826 GGCAGGATCGGTTGGTATT 57.199 52.632 0.00 0.00 0.00 1.89
19 20 2.052782 GGCAGGATCGGTTGGTATTT 57.947 50.000 0.00 0.00 0.00 1.40
20 21 2.375146 GGCAGGATCGGTTGGTATTTT 58.625 47.619 0.00 0.00 0.00 1.82
21 22 2.758423 GGCAGGATCGGTTGGTATTTTT 59.242 45.455 0.00 0.00 0.00 1.94
23 24 3.769536 CAGGATCGGTTGGTATTTTTGC 58.230 45.455 0.00 0.00 0.00 3.68
24 25 3.192422 CAGGATCGGTTGGTATTTTTGCA 59.808 43.478 0.00 0.00 0.00 4.08
25 26 3.829601 AGGATCGGTTGGTATTTTTGCAA 59.170 39.130 0.00 0.00 0.00 4.08
26 27 4.466015 AGGATCGGTTGGTATTTTTGCAAT 59.534 37.500 0.00 0.00 0.00 3.56
27 28 4.803613 GGATCGGTTGGTATTTTTGCAATC 59.196 41.667 0.00 0.00 0.00 2.67
28 29 5.394115 GGATCGGTTGGTATTTTTGCAATCT 60.394 40.000 0.00 0.00 0.00 2.40
29 30 4.804108 TCGGTTGGTATTTTTGCAATCTG 58.196 39.130 0.00 0.00 0.00 2.90
31 32 4.621034 CGGTTGGTATTTTTGCAATCTGTC 59.379 41.667 0.00 0.00 0.00 3.51
33 34 5.405269 GGTTGGTATTTTTGCAATCTGTCAC 59.595 40.000 0.00 0.00 0.00 3.67
34 35 5.781210 TGGTATTTTTGCAATCTGTCACA 57.219 34.783 0.00 0.00 0.00 3.58
35 36 5.527951 TGGTATTTTTGCAATCTGTCACAC 58.472 37.500 0.00 0.00 0.00 3.82
36 37 4.616802 GGTATTTTTGCAATCTGTCACACG 59.383 41.667 0.00 0.00 0.00 4.49
37 38 2.772568 TTTTGCAATCTGTCACACGG 57.227 45.000 0.00 0.00 0.00 4.94
38 39 1.674359 TTTGCAATCTGTCACACGGT 58.326 45.000 0.00 0.00 0.00 4.83
39 40 1.674359 TTGCAATCTGTCACACGGTT 58.326 45.000 0.00 0.00 0.00 4.44
40 41 0.943673 TGCAATCTGTCACACGGTTG 59.056 50.000 0.00 0.00 0.00 3.77
41 42 1.225855 GCAATCTGTCACACGGTTGA 58.774 50.000 4.87 0.00 0.00 3.18
42 43 1.069906 GCAATCTGTCACACGGTTGAC 60.070 52.381 10.82 10.82 45.34 3.18
51 52 4.708601 GTCACACGGTTGACAAATATCAC 58.291 43.478 12.41 0.00 44.62 3.06
52 53 4.212425 GTCACACGGTTGACAAATATCACA 59.788 41.667 12.41 0.00 44.62 3.58
55 56 4.451096 ACACGGTTGACAAATATCACAGTC 59.549 41.667 0.00 0.00 0.00 3.51
56 57 4.000988 ACGGTTGACAAATATCACAGTCC 58.999 43.478 0.00 0.00 0.00 3.85
58 59 4.635765 CGGTTGACAAATATCACAGTCCAT 59.364 41.667 0.00 0.00 0.00 3.41
60 61 6.483307 CGGTTGACAAATATCACAGTCCATAT 59.517 38.462 0.00 0.00 0.00 1.78
61 62 7.655732 CGGTTGACAAATATCACAGTCCATATA 59.344 37.037 0.00 0.00 0.00 0.86
62 63 9.507329 GGTTGACAAATATCACAGTCCATATAT 57.493 33.333 0.00 0.00 0.00 0.86
100 101 8.117758 CAAATTTGCAAAATGGGAAAAAGAAC 57.882 30.769 17.19 0.00 31.78 3.01
101 102 7.643569 AATTTGCAAAATGGGAAAAAGAACT 57.356 28.000 17.19 0.00 31.78 3.01
102 103 8.744568 AATTTGCAAAATGGGAAAAAGAACTA 57.255 26.923 17.19 0.00 31.78 2.24
103 104 8.744568 ATTTGCAAAATGGGAAAAAGAACTAA 57.255 26.923 17.19 0.00 31.78 2.24
104 105 7.546778 TTGCAAAATGGGAAAAAGAACTAAC 57.453 32.000 0.00 0.00 0.00 2.34
105 106 6.644347 TGCAAAATGGGAAAAAGAACTAACA 58.356 32.000 0.00 0.00 0.00 2.41
106 107 7.278875 TGCAAAATGGGAAAAAGAACTAACAT 58.721 30.769 0.00 0.00 0.00 2.71
107 108 8.424918 TGCAAAATGGGAAAAAGAACTAACATA 58.575 29.630 0.00 0.00 0.00 2.29
108 109 9.267084 GCAAAATGGGAAAAAGAACTAACATAA 57.733 29.630 0.00 0.00 0.00 1.90
121 122 8.888579 AGAACTAACATAAATTCTATCCCACG 57.111 34.615 0.00 0.00 29.63 4.94
122 123 8.701895 AGAACTAACATAAATTCTATCCCACGA 58.298 33.333 0.00 0.00 29.63 4.35
123 124 8.888579 AACTAACATAAATTCTATCCCACGAG 57.111 34.615 0.00 0.00 0.00 4.18
124 125 6.929606 ACTAACATAAATTCTATCCCACGAGC 59.070 38.462 0.00 0.00 0.00 5.03
126 127 5.057149 ACATAAATTCTATCCCACGAGCAC 58.943 41.667 0.00 0.00 0.00 4.40
128 129 3.845781 AATTCTATCCCACGAGCACAT 57.154 42.857 0.00 0.00 0.00 3.21
130 131 1.040646 TCTATCCCACGAGCACATCC 58.959 55.000 0.00 0.00 0.00 3.51
131 132 1.043816 CTATCCCACGAGCACATCCT 58.956 55.000 0.00 0.00 0.00 3.24
132 133 2.158519 TCTATCCCACGAGCACATCCTA 60.159 50.000 0.00 0.00 0.00 2.94
133 134 1.496060 ATCCCACGAGCACATCCTAA 58.504 50.000 0.00 0.00 0.00 2.69
134 135 0.535335 TCCCACGAGCACATCCTAAC 59.465 55.000 0.00 0.00 0.00 2.34
135 136 0.806102 CCCACGAGCACATCCTAACG 60.806 60.000 0.00 0.00 0.00 3.18
136 137 0.108804 CCACGAGCACATCCTAACGT 60.109 55.000 0.00 0.00 34.40 3.99
138 139 2.416296 CCACGAGCACATCCTAACGTAA 60.416 50.000 0.00 0.00 32.89 3.18
139 140 3.247442 CACGAGCACATCCTAACGTAAA 58.753 45.455 0.00 0.00 32.89 2.01
140 141 3.863424 CACGAGCACATCCTAACGTAAAT 59.137 43.478 0.00 0.00 32.89 1.40
141 142 4.328983 CACGAGCACATCCTAACGTAAATT 59.671 41.667 0.00 0.00 32.89 1.82
142 143 5.517411 CACGAGCACATCCTAACGTAAATTA 59.483 40.000 0.00 0.00 32.89 1.40
143 144 6.200286 CACGAGCACATCCTAACGTAAATTAT 59.800 38.462 0.00 0.00 32.89 1.28
144 145 7.380333 CACGAGCACATCCTAACGTAAATTATA 59.620 37.037 0.00 0.00 32.89 0.98
145 146 7.922278 ACGAGCACATCCTAACGTAAATTATAA 59.078 33.333 0.00 0.00 32.42 0.98
146 147 8.922676 CGAGCACATCCTAACGTAAATTATAAT 58.077 33.333 0.00 0.00 0.00 1.28
170 171 6.604735 AATTCCGAGTACACATTATTCTGC 57.395 37.500 0.00 0.00 0.00 4.26
171 172 4.729227 TCCGAGTACACATTATTCTGCA 57.271 40.909 0.00 0.00 0.00 4.41
172 173 4.430007 TCCGAGTACACATTATTCTGCAC 58.570 43.478 0.00 0.00 0.00 4.57
173 174 4.159693 TCCGAGTACACATTATTCTGCACT 59.840 41.667 0.00 0.00 0.00 4.40
174 175 5.358725 TCCGAGTACACATTATTCTGCACTA 59.641 40.000 0.00 0.00 0.00 2.74
175 176 5.687730 CCGAGTACACATTATTCTGCACTAG 59.312 44.000 0.00 0.00 0.00 2.57
176 177 5.687730 CGAGTACACATTATTCTGCACTAGG 59.312 44.000 0.00 0.00 0.00 3.02
177 178 6.546428 AGTACACATTATTCTGCACTAGGT 57.454 37.500 0.00 0.00 0.00 3.08
178 179 6.341316 AGTACACATTATTCTGCACTAGGTG 58.659 40.000 0.00 0.00 36.51 4.00
180 181 5.804639 ACACATTATTCTGCACTAGGTGAA 58.195 37.500 1.57 0.00 35.23 3.18
181 182 5.877012 ACACATTATTCTGCACTAGGTGAAG 59.123 40.000 1.57 0.48 40.40 3.02
182 183 5.877012 CACATTATTCTGCACTAGGTGAAGT 59.123 40.000 5.68 0.00 40.00 3.01
184 185 2.839486 TTCTGCACTAGGTGAAGTGG 57.161 50.000 5.68 0.00 45.75 4.00
186 187 0.035317 CTGCACTAGGTGAAGTGGCA 59.965 55.000 6.17 4.20 45.75 4.92
188 189 1.291877 GCACTAGGTGAAGTGGCACG 61.292 60.000 12.71 0.00 45.75 5.34
189 190 0.033504 CACTAGGTGAAGTGGCACGT 59.966 55.000 12.71 9.31 42.63 4.49
190 191 0.317479 ACTAGGTGAAGTGGCACGTC 59.683 55.000 23.93 23.93 39.66 4.34
193 194 1.227853 GGTGAAGTGGCACGTCCTT 60.228 57.895 26.73 10.14 39.66 3.36
194 195 0.818040 GGTGAAGTGGCACGTCCTTT 60.818 55.000 26.73 9.76 39.66 3.11
195 196 1.021968 GTGAAGTGGCACGTCCTTTT 58.978 50.000 26.73 9.04 35.26 2.27
196 197 1.021202 TGAAGTGGCACGTCCTTTTG 58.979 50.000 26.73 0.00 35.26 2.44
198 199 1.404035 GAAGTGGCACGTCCTTTTGTT 59.596 47.619 20.86 2.52 35.26 2.83
199 200 0.738389 AGTGGCACGTCCTTTTGTTG 59.262 50.000 12.71 0.00 35.26 3.33
200 201 0.248866 GTGGCACGTCCTTTTGTTGG 60.249 55.000 0.00 0.00 35.26 3.77
202 203 0.958822 GGCACGTCCTTTTGTTGGAT 59.041 50.000 0.00 0.00 35.87 3.41
203 204 1.339929 GGCACGTCCTTTTGTTGGATT 59.660 47.619 0.00 0.00 35.87 3.01
205 206 2.393764 CACGTCCTTTTGTTGGATTGC 58.606 47.619 0.00 0.00 35.87 3.56
206 207 1.339929 ACGTCCTTTTGTTGGATTGCC 59.660 47.619 0.00 0.00 35.87 4.52
207 208 1.613437 CGTCCTTTTGTTGGATTGCCT 59.387 47.619 0.00 0.00 35.87 4.75
208 209 2.351738 CGTCCTTTTGTTGGATTGCCTC 60.352 50.000 0.00 0.00 35.87 4.70
209 210 1.885887 TCCTTTTGTTGGATTGCCTCG 59.114 47.619 0.00 0.00 34.31 4.63
210 211 1.067635 CCTTTTGTTGGATTGCCTCGG 60.068 52.381 0.00 0.00 34.31 4.63
211 212 0.965439 TTTTGTTGGATTGCCTCGGG 59.035 50.000 0.00 0.00 34.31 5.14
212 213 0.178975 TTTGTTGGATTGCCTCGGGT 60.179 50.000 0.00 0.00 34.31 5.28
213 214 0.608035 TTGTTGGATTGCCTCGGGTC 60.608 55.000 0.00 0.00 34.31 4.46
216 217 4.162690 GGATTGCCTCGGGTCGCT 62.163 66.667 0.00 0.00 0.00 4.93
217 218 2.892425 GATTGCCTCGGGTCGCTG 60.892 66.667 0.00 0.00 0.00 5.18
222 223 4.796231 CCTCGGGTCGCTGGTTCG 62.796 72.222 0.00 0.00 0.00 3.95
223 224 4.796231 CTCGGGTCGCTGGTTCGG 62.796 72.222 0.00 0.00 0.00 4.30
225 226 4.367023 CGGGTCGCTGGTTCGGAA 62.367 66.667 0.00 0.00 0.00 4.30
226 227 2.741211 GGGTCGCTGGTTCGGAAC 60.741 66.667 12.41 12.41 0.00 3.62
321 322 9.528489 AAAAGTTGGGTATACATTTATGTCACT 57.472 29.630 5.01 0.00 41.97 3.41
324 325 7.987458 AGTTGGGTATACATTTATGTCACTGAG 59.013 37.037 5.01 0.00 41.97 3.35
327 328 7.093068 TGGGTATACATTTATGTCACTGAGTGT 60.093 37.037 12.93 0.00 41.97 3.55
328 329 8.418662 GGGTATACATTTATGTCACTGAGTGTA 58.581 37.037 12.93 3.67 41.97 2.90
329 330 9.464714 GGTATACATTTATGTCACTGAGTGTAG 57.535 37.037 12.93 0.00 41.97 2.74
330 331 9.464714 GTATACATTTATGTCACTGAGTGTAGG 57.535 37.037 12.93 0.00 41.97 3.18
331 332 5.734720 ACATTTATGTCACTGAGTGTAGGG 58.265 41.667 12.93 0.00 35.87 3.53
332 333 5.248477 ACATTTATGTCACTGAGTGTAGGGT 59.752 40.000 12.93 0.00 35.87 4.34
333 334 4.801330 TTATGTCACTGAGTGTAGGGTG 57.199 45.455 12.93 0.00 34.79 4.61
334 335 1.338107 TGTCACTGAGTGTAGGGTGG 58.662 55.000 12.93 0.00 34.79 4.61
339 340 2.227089 CTGAGTGTAGGGTGGTCGCC 62.227 65.000 0.00 0.00 0.00 5.54
340 341 1.982938 GAGTGTAGGGTGGTCGCCT 60.983 63.158 0.31 0.00 0.00 5.52
341 342 2.227089 GAGTGTAGGGTGGTCGCCTG 62.227 65.000 0.31 0.00 0.00 4.85
342 343 3.000819 TGTAGGGTGGTCGCCTGG 61.001 66.667 0.31 0.00 0.00 4.45
343 344 4.468689 GTAGGGTGGTCGCCTGGC 62.469 72.222 9.11 9.11 0.00 4.85
344 345 4.715130 TAGGGTGGTCGCCTGGCT 62.715 66.667 17.92 0.00 0.00 4.75
345 346 3.305619 TAGGGTGGTCGCCTGGCTA 62.306 63.158 17.92 2.11 0.00 3.93
346 347 4.162690 GGGTGGTCGCCTGGCTAG 62.163 72.222 17.92 1.70 0.00 3.42
347 348 4.840005 GGTGGTCGCCTGGCTAGC 62.840 72.222 17.92 16.20 0.00 3.42
348 349 4.082523 GTGGTCGCCTGGCTAGCA 62.083 66.667 19.55 19.55 29.78 3.49
350 351 3.775654 GGTCGCCTGGCTAGCAGT 61.776 66.667 18.24 0.00 0.00 4.40
353 354 4.765449 CGCCTGGCTAGCAGTGCA 62.765 66.667 19.20 4.02 0.00 4.57
354 355 3.130160 GCCTGGCTAGCAGTGCAC 61.130 66.667 19.20 9.40 0.00 4.57
355 356 2.816958 CCTGGCTAGCAGTGCACG 60.817 66.667 19.20 8.62 0.00 5.34
357 358 1.153489 CTGGCTAGCAGTGCACGAT 60.153 57.895 19.20 7.93 0.00 3.73
358 359 1.426816 CTGGCTAGCAGTGCACGATG 61.427 60.000 19.20 6.45 0.00 3.84
359 360 2.176273 GGCTAGCAGTGCACGATGG 61.176 63.158 19.20 8.46 0.00 3.51
360 361 1.448540 GCTAGCAGTGCACGATGGT 60.449 57.895 19.20 13.33 0.00 3.55
361 362 1.021390 GCTAGCAGTGCACGATGGTT 61.021 55.000 19.20 5.91 0.00 3.67
363 364 1.129251 CTAGCAGTGCACGATGGTTTG 59.871 52.381 19.20 5.93 0.00 2.93
364 365 1.730547 GCAGTGCACGATGGTTTGC 60.731 57.895 11.09 10.24 39.33 3.68
367 368 3.361158 TGCACGATGGTTTGCCCG 61.361 61.111 0.00 0.00 38.00 6.13
368 369 3.053291 GCACGATGGTTTGCCCGA 61.053 61.111 0.00 0.00 35.15 5.14
369 370 3.039202 GCACGATGGTTTGCCCGAG 62.039 63.158 0.00 0.00 35.15 4.63
371 372 2.046314 CGATGGTTTGCCCGAGGT 60.046 61.111 0.00 0.00 35.15 3.85
375 376 0.178975 ATGGTTTGCCCGAGGTTCAA 60.179 50.000 0.00 0.00 35.15 2.69
376 377 0.395862 TGGTTTGCCCGAGGTTCAAA 60.396 50.000 0.00 3.70 35.15 2.69
377 378 0.966179 GGTTTGCCCGAGGTTCAAAT 59.034 50.000 9.04 0.00 33.08 2.32
379 380 1.886542 GTTTGCCCGAGGTTCAAATCT 59.113 47.619 9.04 0.00 33.08 2.40
384 385 2.945890 GCCCGAGGTTCAAATCTTGGAT 60.946 50.000 10.41 0.00 42.42 3.41
386 387 3.347216 CCGAGGTTCAAATCTTGGATGT 58.653 45.455 3.48 0.00 42.42 3.06
387 388 4.513442 CCGAGGTTCAAATCTTGGATGTA 58.487 43.478 3.48 0.00 42.42 2.29
388 389 5.126067 CCGAGGTTCAAATCTTGGATGTAT 58.874 41.667 3.48 0.00 42.42 2.29
389 390 5.008019 CCGAGGTTCAAATCTTGGATGTATG 59.992 44.000 3.48 0.00 42.42 2.39
390 391 5.504665 CGAGGTTCAAATCTTGGATGTATGC 60.505 44.000 0.00 0.00 0.00 3.14
391 392 4.646492 AGGTTCAAATCTTGGATGTATGCC 59.354 41.667 0.00 0.00 0.00 4.40
392 393 4.402155 GGTTCAAATCTTGGATGTATGCCA 59.598 41.667 0.00 0.00 0.00 4.92
394 395 4.598022 TCAAATCTTGGATGTATGCCACA 58.402 39.130 0.00 0.00 42.69 4.17
395 396 5.015515 TCAAATCTTGGATGTATGCCACAA 58.984 37.500 0.00 0.00 41.55 3.33
396 397 5.125900 TCAAATCTTGGATGTATGCCACAAG 59.874 40.000 0.00 0.00 41.55 3.16
397 398 3.719268 TCTTGGATGTATGCCACAAGT 57.281 42.857 0.00 0.00 41.55 3.16
400 401 3.719268 TGGATGTATGCCACAAGTTCT 57.281 42.857 0.00 0.00 41.55 3.01
402 403 2.684881 GGATGTATGCCACAAGTTCTGG 59.315 50.000 0.00 0.00 41.55 3.86
403 404 2.949177 TGTATGCCACAAGTTCTGGT 57.051 45.000 0.00 0.00 32.95 4.00
405 406 2.105649 TGTATGCCACAAGTTCTGGTGA 59.894 45.455 8.72 0.00 37.18 4.02
407 408 2.136298 TGCCACAAGTTCTGGTGAAA 57.864 45.000 8.72 0.00 37.18 2.69
408 409 2.451490 TGCCACAAGTTCTGGTGAAAA 58.549 42.857 8.72 0.00 37.18 2.29
409 410 3.030291 TGCCACAAGTTCTGGTGAAAAT 58.970 40.909 8.72 0.00 37.18 1.82
410 411 4.211125 TGCCACAAGTTCTGGTGAAAATA 58.789 39.130 8.72 0.00 37.18 1.40
411 412 4.646945 TGCCACAAGTTCTGGTGAAAATAA 59.353 37.500 8.72 0.00 37.18 1.40
412 413 5.221224 TGCCACAAGTTCTGGTGAAAATAAG 60.221 40.000 8.72 0.00 37.18 1.73
413 414 5.772521 CCACAAGTTCTGGTGAAAATAAGG 58.227 41.667 8.72 0.00 37.18 2.69
414 415 5.222631 CACAAGTTCTGGTGAAAATAAGGC 58.777 41.667 1.40 0.00 37.18 4.35
415 416 4.023193 ACAAGTTCTGGTGAAAATAAGGCG 60.023 41.667 0.00 0.00 33.52 5.52
417 418 3.502211 AGTTCTGGTGAAAATAAGGCGTG 59.498 43.478 0.00 0.00 33.52 5.34
418 419 3.134574 TCTGGTGAAAATAAGGCGTGT 57.865 42.857 0.00 0.00 0.00 4.49
419 420 2.811431 TCTGGTGAAAATAAGGCGTGTG 59.189 45.455 0.00 0.00 0.00 3.82
420 421 1.883275 TGGTGAAAATAAGGCGTGTGG 59.117 47.619 0.00 0.00 0.00 4.17
422 423 2.351350 GGTGAAAATAAGGCGTGTGGTG 60.351 50.000 0.00 0.00 0.00 4.17
423 424 2.292292 GTGAAAATAAGGCGTGTGGTGT 59.708 45.455 0.00 0.00 0.00 4.16
424 425 2.292016 TGAAAATAAGGCGTGTGGTGTG 59.708 45.455 0.00 0.00 0.00 3.82
426 427 0.250727 AATAAGGCGTGTGGTGTGCT 60.251 50.000 0.00 0.00 0.00 4.40
427 428 0.611200 ATAAGGCGTGTGGTGTGCTA 59.389 50.000 0.00 0.00 0.00 3.49
428 429 0.393448 TAAGGCGTGTGGTGTGCTAA 59.607 50.000 0.00 0.00 0.00 3.09
429 430 1.164041 AAGGCGTGTGGTGTGCTAAC 61.164 55.000 0.00 0.00 0.00 2.34
430 431 2.613506 GGCGTGTGGTGTGCTAACC 61.614 63.158 1.76 1.76 40.94 2.85
433 434 1.155424 CGTGTGGTGTGCTAACCGTT 61.155 55.000 4.26 0.00 43.73 4.44
434 435 1.018910 GTGTGGTGTGCTAACCGTTT 58.981 50.000 4.26 0.00 43.73 3.60
435 436 1.402613 GTGTGGTGTGCTAACCGTTTT 59.597 47.619 4.26 0.00 43.73 2.43
439 440 3.065095 GTGGTGTGCTAACCGTTTTTACA 59.935 43.478 4.26 0.00 43.73 2.41
441 442 3.548616 GGTGTGCTAACCGTTTTTACACC 60.549 47.826 19.25 19.25 46.45 4.16
442 443 3.065095 GTGTGCTAACCGTTTTTACACCA 59.935 43.478 10.89 0.00 32.92 4.17
444 445 3.313249 GTGCTAACCGTTTTTACACCACT 59.687 43.478 0.00 0.00 0.00 4.00
445 446 3.946558 TGCTAACCGTTTTTACACCACTT 59.053 39.130 0.00 0.00 0.00 3.16
446 447 4.398673 TGCTAACCGTTTTTACACCACTTT 59.601 37.500 0.00 0.00 0.00 2.66
447 448 4.736307 GCTAACCGTTTTTACACCACTTTG 59.264 41.667 0.00 0.00 0.00 2.77
448 449 5.448904 GCTAACCGTTTTTACACCACTTTGA 60.449 40.000 0.00 0.00 0.00 2.69
449 450 5.585820 AACCGTTTTTACACCACTTTGAT 57.414 34.783 0.00 0.00 0.00 2.57
450 451 4.927422 ACCGTTTTTACACCACTTTGATG 58.073 39.130 0.00 0.00 0.00 3.07
451 452 4.399934 ACCGTTTTTACACCACTTTGATGT 59.600 37.500 0.00 0.00 0.00 3.06
452 453 4.737765 CCGTTTTTACACCACTTTGATGTG 59.262 41.667 0.00 0.00 37.66 3.21
459 460 3.460114 CACTTTGATGTGGCGTGTG 57.540 52.632 0.00 0.00 34.56 3.82
460 461 0.040157 CACTTTGATGTGGCGTGTGG 60.040 55.000 0.00 0.00 34.56 4.17
461 462 0.465460 ACTTTGATGTGGCGTGTGGT 60.465 50.000 0.00 0.00 0.00 4.16
462 463 0.040157 CTTTGATGTGGCGTGTGGTG 60.040 55.000 0.00 0.00 0.00 4.17
463 464 0.749818 TTTGATGTGGCGTGTGGTGT 60.750 50.000 0.00 0.00 0.00 4.16
464 465 1.443322 TTGATGTGGCGTGTGGTGTG 61.443 55.000 0.00 0.00 0.00 3.82
465 466 3.254014 GATGTGGCGTGTGGTGTGC 62.254 63.158 0.00 0.00 0.00 4.57
467 468 2.280524 GTGGCGTGTGGTGTGCTA 60.281 61.111 0.00 0.00 0.00 3.49
468 469 1.890041 GTGGCGTGTGGTGTGCTAA 60.890 57.895 0.00 0.00 0.00 3.09
469 470 1.072332 TGGCGTGTGGTGTGCTAAT 59.928 52.632 0.00 0.00 0.00 1.73
470 471 0.953471 TGGCGTGTGGTGTGCTAATC 60.953 55.000 0.00 0.00 0.00 1.75
471 472 0.953471 GGCGTGTGGTGTGCTAATCA 60.953 55.000 0.00 0.00 0.00 2.57
478 479 3.558674 GTGTGCTAATCACCTGGCT 57.441 52.632 0.00 0.00 45.03 4.75
479 480 2.691409 GTGTGCTAATCACCTGGCTA 57.309 50.000 0.00 0.00 45.03 3.93
480 481 2.985896 GTGTGCTAATCACCTGGCTAA 58.014 47.619 0.00 0.00 45.03 3.09
481 482 3.545703 GTGTGCTAATCACCTGGCTAAT 58.454 45.455 0.00 0.00 45.03 1.73
484 485 4.141413 TGTGCTAATCACCTGGCTAATCAT 60.141 41.667 0.00 0.00 45.03 2.45
486 487 5.300286 GTGCTAATCACCTGGCTAATCATTT 59.700 40.000 0.00 0.00 39.79 2.32
487 488 5.893255 TGCTAATCACCTGGCTAATCATTTT 59.107 36.000 0.00 0.00 0.00 1.82
488 489 6.380846 TGCTAATCACCTGGCTAATCATTTTT 59.619 34.615 0.00 0.00 0.00 1.94
489 490 7.559533 TGCTAATCACCTGGCTAATCATTTTTA 59.440 33.333 0.00 0.00 0.00 1.52
490 491 8.078596 GCTAATCACCTGGCTAATCATTTTTAG 58.921 37.037 0.00 0.00 33.24 1.85
492 493 7.573968 ATCACCTGGCTAATCATTTTTAGAC 57.426 36.000 0.00 0.00 37.66 2.59
493 494 5.885912 TCACCTGGCTAATCATTTTTAGACC 59.114 40.000 0.00 0.00 36.53 3.85
494 495 5.652014 CACCTGGCTAATCATTTTTAGACCA 59.348 40.000 0.00 0.00 36.53 4.02
495 496 5.652452 ACCTGGCTAATCATTTTTAGACCAC 59.348 40.000 0.00 0.00 36.53 4.16
497 498 6.378280 CCTGGCTAATCATTTTTAGACCACTT 59.622 38.462 0.00 0.00 36.53 3.16
498 499 7.093771 CCTGGCTAATCATTTTTAGACCACTTT 60.094 37.037 0.00 0.00 36.53 2.66
500 501 9.303116 TGGCTAATCATTTTTAGACCACTTTAA 57.697 29.630 0.00 0.00 36.53 1.52
509 510 8.410673 TTTTTAGACCACTTTAATGTATGCCA 57.589 30.769 0.00 0.00 0.00 4.92
510 511 6.995511 TTAGACCACTTTAATGTATGCCAC 57.004 37.500 0.00 0.00 0.00 5.01
511 512 4.917385 AGACCACTTTAATGTATGCCACA 58.083 39.130 0.00 0.00 42.69 4.17
512 513 5.321102 AGACCACTTTAATGTATGCCACAA 58.679 37.500 0.00 0.00 41.55 3.33
513 514 5.415701 AGACCACTTTAATGTATGCCACAAG 59.584 40.000 0.00 0.00 41.55 3.16
514 515 5.076873 ACCACTTTAATGTATGCCACAAGT 58.923 37.500 0.00 0.00 41.55 3.16
515 516 5.183140 ACCACTTTAATGTATGCCACAAGTC 59.817 40.000 0.00 0.00 41.55 3.01
517 518 5.415701 CACTTTAATGTATGCCACAAGTCCT 59.584 40.000 0.00 0.00 41.55 3.85
518 519 6.597672 CACTTTAATGTATGCCACAAGTCCTA 59.402 38.462 0.00 0.00 41.55 2.94
519 520 6.823689 ACTTTAATGTATGCCACAAGTCCTAG 59.176 38.462 0.00 0.00 41.55 3.02
520 521 2.691409 TGTATGCCACAAGTCCTAGC 57.309 50.000 0.00 0.00 32.95 3.42
521 522 1.905894 TGTATGCCACAAGTCCTAGCA 59.094 47.619 0.00 0.00 37.94 3.49
522 523 2.505407 TGTATGCCACAAGTCCTAGCAT 59.495 45.455 0.00 0.00 45.58 3.79
523 524 2.814805 ATGCCACAAGTCCTAGCATT 57.185 45.000 0.00 0.00 41.19 3.56
524 525 3.931907 ATGCCACAAGTCCTAGCATTA 57.068 42.857 0.00 0.00 41.19 1.90
526 527 4.027674 TGCCACAAGTCCTAGCATTAAA 57.972 40.909 0.00 0.00 0.00 1.52
528 529 4.010349 GCCACAAGTCCTAGCATTAAAGT 58.990 43.478 0.00 0.00 0.00 2.66
529 530 5.183228 GCCACAAGTCCTAGCATTAAAGTA 58.817 41.667 0.00 0.00 0.00 2.24
532 533 7.467403 GCCACAAGTCCTAGCATTAAAGTAATC 60.467 40.741 0.00 0.00 0.00 1.75
538 539 6.905609 GTCCTAGCATTAAAGTAATCGTTTGC 59.094 38.462 0.00 0.00 0.00 3.68
539 540 5.901884 CCTAGCATTAAAGTAATCGTTTGCG 59.098 40.000 0.00 0.00 39.92 4.85
540 541 5.291293 AGCATTAAAGTAATCGTTTGCGT 57.709 34.783 0.00 0.00 39.49 5.24
541 542 5.321516 AGCATTAAAGTAATCGTTTGCGTC 58.678 37.500 0.00 0.00 39.49 5.19
542 543 5.083389 GCATTAAAGTAATCGTTTGCGTCA 58.917 37.500 0.00 0.00 39.49 4.35
543 544 5.566016 GCATTAAAGTAATCGTTTGCGTCAA 59.434 36.000 0.00 0.00 39.49 3.18
544 545 6.236941 GCATTAAAGTAATCGTTTGCGTCAAG 60.237 38.462 0.00 0.00 39.49 3.02
545 546 4.806342 AAAGTAATCGTTTGCGTCAAGT 57.194 36.364 0.00 0.00 39.49 3.16
546 547 4.806342 AAGTAATCGTTTGCGTCAAGTT 57.194 36.364 0.00 0.00 39.49 2.66
548 549 4.056050 AGTAATCGTTTGCGTCAAGTTCT 58.944 39.130 0.00 0.00 39.49 3.01
550 551 4.647291 AATCGTTTGCGTCAAGTTCTAG 57.353 40.909 0.00 0.00 39.49 2.43
551 552 1.790623 TCGTTTGCGTCAAGTTCTAGC 59.209 47.619 0.00 0.00 39.49 3.42
552 553 1.525197 CGTTTGCGTCAAGTTCTAGCA 59.475 47.619 0.00 0.00 35.90 3.49
555 556 0.391228 TGCGTCAAGTTCTAGCACCA 59.609 50.000 0.00 0.00 32.43 4.17
556 557 0.790814 GCGTCAAGTTCTAGCACCAC 59.209 55.000 0.00 0.00 0.00 4.16
557 558 1.429463 CGTCAAGTTCTAGCACCACC 58.571 55.000 0.00 0.00 0.00 4.61
558 559 1.429463 GTCAAGTTCTAGCACCACCG 58.571 55.000 0.00 0.00 0.00 4.94
560 561 0.034896 CAAGTTCTAGCACCACCGGT 59.965 55.000 0.00 0.00 35.62 5.28
572 573 3.097342 ACCACCGGTGTAATAGACTCT 57.903 47.619 31.80 0.00 32.98 3.24
573 574 3.438183 ACCACCGGTGTAATAGACTCTT 58.562 45.455 31.80 0.00 32.98 2.85
574 575 3.836562 ACCACCGGTGTAATAGACTCTTT 59.163 43.478 31.80 0.00 32.98 2.52
575 576 5.018809 ACCACCGGTGTAATAGACTCTTTA 58.981 41.667 31.80 0.00 32.98 1.85
577 578 5.032863 CACCGGTGTAATAGACTCTTTACG 58.967 45.833 26.95 0.00 32.23 3.18
578 579 4.702131 ACCGGTGTAATAGACTCTTTACGT 59.298 41.667 6.12 0.00 32.23 3.57
579 580 5.163713 ACCGGTGTAATAGACTCTTTACGTC 60.164 44.000 6.12 0.00 32.23 4.34
580 581 5.269313 CGGTGTAATAGACTCTTTACGTCC 58.731 45.833 0.00 7.43 32.23 4.79
581 582 5.163723 CGGTGTAATAGACTCTTTACGTCCA 60.164 44.000 0.00 0.00 32.23 4.02
582 583 6.264088 GGTGTAATAGACTCTTTACGTCCAG 58.736 44.000 0.00 0.00 32.23 3.86
583 584 6.094603 GGTGTAATAGACTCTTTACGTCCAGA 59.905 42.308 0.00 0.00 32.23 3.86
585 586 6.656270 TGTAATAGACTCTTTACGTCCAGACA 59.344 38.462 0.00 0.00 32.23 3.41
586 587 3.919223 AGACTCTTTACGTCCAGACAC 57.081 47.619 0.00 0.00 31.83 3.67
587 588 3.220110 AGACTCTTTACGTCCAGACACA 58.780 45.455 0.00 0.00 31.83 3.72
588 589 3.827302 AGACTCTTTACGTCCAGACACAT 59.173 43.478 0.00 0.00 31.83 3.21
590 591 5.124138 AGACTCTTTACGTCCAGACACATAG 59.876 44.000 0.00 0.00 31.83 2.23
591 592 4.106029 TCTTTACGTCCAGACACATAGC 57.894 45.455 0.00 0.00 0.00 2.97
592 593 2.953466 TTACGTCCAGACACATAGCC 57.047 50.000 0.00 0.00 0.00 3.93
593 594 1.108776 TACGTCCAGACACATAGCCC 58.891 55.000 0.00 0.00 0.00 5.19
594 595 0.902984 ACGTCCAGACACATAGCCCA 60.903 55.000 0.00 0.00 0.00 5.36
595 596 0.465705 CGTCCAGACACATAGCCCAT 59.534 55.000 0.00 0.00 0.00 4.00
596 597 1.134401 CGTCCAGACACATAGCCCATT 60.134 52.381 0.00 0.00 0.00 3.16
597 598 2.292267 GTCCAGACACATAGCCCATTG 58.708 52.381 0.00 0.00 0.00 2.82
598 599 1.212688 TCCAGACACATAGCCCATTGG 59.787 52.381 0.00 0.00 0.00 3.16
614 615 4.202346 CCCATTGGCCTTTTTCTTTTCTCA 60.202 41.667 3.32 0.00 0.00 3.27
615 616 4.751600 CCATTGGCCTTTTTCTTTTCTCAC 59.248 41.667 3.32 0.00 0.00 3.51
616 617 3.708563 TGGCCTTTTTCTTTTCTCACG 57.291 42.857 3.32 0.00 0.00 4.35
617 618 3.020984 TGGCCTTTTTCTTTTCTCACGT 58.979 40.909 3.32 0.00 0.00 4.49
618 619 4.200874 TGGCCTTTTTCTTTTCTCACGTA 58.799 39.130 3.32 0.00 0.00 3.57
619 620 4.641094 TGGCCTTTTTCTTTTCTCACGTAA 59.359 37.500 3.32 0.00 0.00 3.18
621 622 4.974275 GCCTTTTTCTTTTCTCACGTAACC 59.026 41.667 0.00 0.00 0.00 2.85
622 623 5.449451 GCCTTTTTCTTTTCTCACGTAACCA 60.449 40.000 0.00 0.00 0.00 3.67
623 624 6.734871 GCCTTTTTCTTTTCTCACGTAACCAT 60.735 38.462 0.00 0.00 0.00 3.55
624 625 7.520937 GCCTTTTTCTTTTCTCACGTAACCATA 60.521 37.037 0.00 0.00 0.00 2.74
625 626 7.801783 CCTTTTTCTTTTCTCACGTAACCATAC 59.198 37.037 0.00 0.00 0.00 2.39
626 627 6.790285 TTTCTTTTCTCACGTAACCATACC 57.210 37.500 0.00 0.00 0.00 2.73
627 628 5.733620 TCTTTTCTCACGTAACCATACCT 57.266 39.130 0.00 0.00 0.00 3.08
629 630 4.877378 TTTCTCACGTAACCATACCTGT 57.123 40.909 0.00 0.00 0.00 4.00
630 631 4.877378 TTCTCACGTAACCATACCTGTT 57.123 40.909 0.00 0.00 0.00 3.16
631 632 5.981088 TTCTCACGTAACCATACCTGTTA 57.019 39.130 0.00 0.00 0.00 2.41
632 633 6.534475 TTCTCACGTAACCATACCTGTTAT 57.466 37.500 0.00 0.00 31.41 1.89
634 635 5.419788 TCTCACGTAACCATACCTGTTATGT 59.580 40.000 0.00 0.00 44.91 2.29
638 639 6.019075 CACGTAACCATACCTGTTATGTCATG 60.019 42.308 5.33 0.00 43.19 3.07
639 640 6.046593 CGTAACCATACCTGTTATGTCATGT 58.953 40.000 0.00 0.00 36.54 3.21
652 4827 1.202915 TGTCATGTCACCAACCATGCT 60.203 47.619 0.00 0.00 38.63 3.79
654 4829 3.282021 GTCATGTCACCAACCATGCTAT 58.718 45.455 0.00 0.00 38.63 2.97
660 4835 3.885297 GTCACCAACCATGCTATTATGCT 59.115 43.478 0.00 0.00 0.00 3.79
663 4838 6.039270 GTCACCAACCATGCTATTATGCTAAA 59.961 38.462 0.00 0.00 0.00 1.85
681 4856 2.260844 AACACACCTGTCACCATCAG 57.739 50.000 0.00 0.00 0.00 2.90
683 4858 1.070758 ACACACCTGTCACCATCAGTC 59.929 52.381 0.00 0.00 0.00 3.51
691 4866 1.461127 GTCACCATCAGTCTCGTTTGC 59.539 52.381 0.00 0.00 0.00 3.68
694 4869 1.202758 ACCATCAGTCTCGTTTGCCAA 60.203 47.619 0.00 0.00 0.00 4.52
696 4871 2.159476 CCATCAGTCTCGTTTGCCAATG 60.159 50.000 0.00 0.00 0.00 2.82
699 4874 1.154225 GTCTCGTTTGCCAATGCCG 60.154 57.895 0.00 0.00 36.33 5.69
711 4886 2.949644 GCCAATGCCGGTATTTTACTCT 59.050 45.455 15.79 0.00 0.00 3.24
717 4892 3.132289 TGCCGGTATTTTACTCTCTGGAG 59.868 47.826 1.90 0.00 44.62 3.86
725 4900 3.895232 TTACTCTCTGGAGCACATTCC 57.105 47.619 0.00 0.00 42.98 3.01
736 4911 0.388659 GCACATTCCTTGCACACCAA 59.611 50.000 0.00 0.00 39.93 3.67
737 4912 1.001181 GCACATTCCTTGCACACCAAT 59.999 47.619 0.00 0.00 39.93 3.16
739 4914 3.305950 GCACATTCCTTGCACACCAATAA 60.306 43.478 0.00 0.00 39.93 1.40
740 4915 4.798924 GCACATTCCTTGCACACCAATAAA 60.799 41.667 0.00 0.00 39.93 1.40
741 4916 4.685628 CACATTCCTTGCACACCAATAAAC 59.314 41.667 0.00 0.00 31.91 2.01
743 4918 4.314740 TTCCTTGCACACCAATAAACAC 57.685 40.909 0.00 0.00 31.91 3.32
744 4919 2.625790 TCCTTGCACACCAATAAACACC 59.374 45.455 0.00 0.00 31.91 4.16
745 4920 2.606795 CCTTGCACACCAATAAACACCG 60.607 50.000 0.00 0.00 31.91 4.94
754 4944 2.587956 CAATAAACACCGACGACGAGA 58.412 47.619 9.28 0.00 42.66 4.04
763 4953 1.406219 CGACGACGAGAAGTGCCATG 61.406 60.000 0.00 0.00 42.66 3.66
791 4988 1.247567 CCCGGCCTGCATAATTAAGG 58.752 55.000 0.00 0.00 0.00 2.69
804 5001 5.393461 GCATAATTAAGGCTGAACTGCTGTT 60.393 40.000 8.91 8.91 39.42 3.16
849 5046 1.307343 CCTCACCAGACCCCATCCT 60.307 63.158 0.00 0.00 0.00 3.24
862 5059 2.933287 ATCCTGCACCAACCCCGA 60.933 61.111 0.00 0.00 0.00 5.14
889 5086 5.014858 CCGGGACACCTATTTATAGCTCTA 58.985 45.833 0.00 0.00 33.28 2.43
892 5089 7.526769 CGGGACACCTATTTATAGCTCTAGCT 61.527 46.154 9.80 9.80 44.45 3.32
919 5116 2.670934 CTCGGCAACCAAGCAGCT 60.671 61.111 0.00 0.00 35.83 4.24
920 5117 1.375908 CTCGGCAACCAAGCAGCTA 60.376 57.895 0.00 0.00 35.83 3.32
924 5141 0.961753 GGCAACCAAGCAGCTACTTT 59.038 50.000 0.00 0.00 35.83 2.66
935 9556 2.092838 GCAGCTACTTTCACTAGCAACG 59.907 50.000 0.00 0.00 39.36 4.10
940 9561 1.602377 ACTTTCACTAGCAACGCAACC 59.398 47.619 0.00 0.00 0.00 3.77
942 9563 1.225376 TTCACTAGCAACGCAACCCG 61.225 55.000 0.00 0.00 44.21 5.28
958 9579 0.678395 CCCGCTGACTGAGCTCATAT 59.322 55.000 18.63 8.76 46.64 1.78
982 9603 2.892425 CGCCTGCCCGTCTGAATC 60.892 66.667 0.00 0.00 0.00 2.52
1039 9660 2.024871 CCCACGAGATCGAGTCGC 59.975 66.667 17.36 4.63 41.26 5.19
1125 9746 4.082523 CCCCACATCGTCGCCAGT 62.083 66.667 0.00 0.00 0.00 4.00
1209 9830 2.616960 ACGTACGCATCACAATCACAT 58.383 42.857 16.72 0.00 0.00 3.21
1210 9831 3.776340 ACGTACGCATCACAATCACATA 58.224 40.909 16.72 0.00 0.00 2.29
1211 9832 3.550275 ACGTACGCATCACAATCACATAC 59.450 43.478 16.72 0.00 0.00 2.39
1234 9855 0.677731 AACCCATGCATGTCACCTCG 60.678 55.000 24.58 7.82 0.00 4.63
1320 9969 0.032615 AGAGGCTCGAGTTCCTGGAT 60.033 55.000 15.44 0.38 31.71 3.41
1322 9971 1.522580 GGCTCGAGTTCCTGGATGC 60.523 63.158 15.13 0.00 0.00 3.91
1434 14380 3.470888 GCCAGCGGAGGGAGCTTA 61.471 66.667 0.00 0.00 44.06 3.09
1449 14395 2.563179 GAGCTTAGTGAAGGTGGACTCA 59.437 50.000 0.00 0.00 43.44 3.41
1488 14434 1.078759 GCGTGGAGGTGAATGACGAG 61.079 60.000 0.00 0.00 31.71 4.18
1506 14452 0.622665 AGATCACCAAGGCCAAGGAG 59.377 55.000 19.28 11.93 0.00 3.69
1514 14460 1.201429 AAGGCCAAGGAGTCCGTCAT 61.201 55.000 5.01 0.00 0.00 3.06
1515 14461 1.450312 GGCCAAGGAGTCCGTCATG 60.450 63.158 2.76 2.09 0.00 3.07
1621 14567 7.255590 ATGCAGACATAATTGGTATTTGCTACC 60.256 37.037 0.00 0.00 41.78 3.18
1671 14617 2.161609 GGTATTTGTGTGCTTCTTCCCG 59.838 50.000 0.00 0.00 0.00 5.14
1701 14647 8.664211 AAATAAAATAAAGGCGTCCTCTAGAG 57.336 34.615 13.18 13.18 30.89 2.43
1702 14648 5.678955 AAAATAAAGGCGTCCTCTAGAGT 57.321 39.130 18.42 0.00 30.89 3.24
1703 14649 4.922471 AATAAAGGCGTCCTCTAGAGTC 57.078 45.455 18.42 10.00 30.89 3.36
1704 14650 1.096416 AAAGGCGTCCTCTAGAGTCG 58.904 55.000 22.01 22.01 30.89 4.18
1750 14696 3.321968 TGCACTTGAGAAGAAGCTGAGTA 59.678 43.478 0.00 0.00 35.32 2.59
1754 14700 6.627065 GCACTTGAGAAGAAGCTGAGTAGTAT 60.627 42.308 0.00 0.00 32.92 2.12
1755 14701 7.415765 GCACTTGAGAAGAAGCTGAGTAGTATA 60.416 40.741 0.00 0.00 32.92 1.47
1756 14702 8.128582 CACTTGAGAAGAAGCTGAGTAGTATAG 58.871 40.741 0.00 0.00 0.00 1.31
1757 14703 7.284489 ACTTGAGAAGAAGCTGAGTAGTATAGG 59.716 40.741 0.00 0.00 0.00 2.57
1758 14704 6.901300 TGAGAAGAAGCTGAGTAGTATAGGA 58.099 40.000 0.00 0.00 0.00 2.94
1759 14705 7.347252 TGAGAAGAAGCTGAGTAGTATAGGAA 58.653 38.462 0.00 0.00 0.00 3.36
1760 14706 8.001875 TGAGAAGAAGCTGAGTAGTATAGGAAT 58.998 37.037 0.00 0.00 0.00 3.01
1804 14750 5.576384 TCAGAGTTGTTTTGTTGTTTGATGC 59.424 36.000 0.00 0.00 0.00 3.91
1818 14764 6.947644 TGTTTGATGCTGCATATGTATCTT 57.052 33.333 16.23 0.00 0.00 2.40
1848 14794 6.074516 GGAAATTGTTTGTTTTAAGGCGACTC 60.075 38.462 0.00 0.00 42.68 3.36
1887 14833 2.636299 CCAAATTTGGGTCGGTCGT 58.364 52.632 26.87 0.00 44.70 4.34
2047 14993 1.589716 GCAACACCTCTGCATCCCAC 61.590 60.000 0.00 0.00 39.69 4.61
2048 14994 0.962356 CAACACCTCTGCATCCCACC 60.962 60.000 0.00 0.00 0.00 4.61
2051 14997 2.362369 ACCTCTGCATCCCACCTCG 61.362 63.158 0.00 0.00 0.00 4.63
2076 15022 2.737830 GCTCGTCATAGCTCCCCC 59.262 66.667 0.00 0.00 39.50 5.40
2079 15025 3.227276 CGTCATAGCTCCCCCGCT 61.227 66.667 0.00 0.00 43.83 5.52
2081 15027 2.912542 TCATAGCTCCCCCGCTCG 60.913 66.667 0.00 0.00 41.30 5.03
2082 15028 3.227276 CATAGCTCCCCCGCTCGT 61.227 66.667 0.00 0.00 41.30 4.18
2527 15473 0.923403 CACCGTCGTAGCATCACATG 59.077 55.000 0.00 0.00 0.00 3.21
2535 15481 2.607411 TAGCATCACATGGGCACGGG 62.607 60.000 0.00 0.00 0.00 5.28
2536 15482 2.829914 CATCACATGGGCACGGGG 60.830 66.667 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.769536 CAAAAATACCAACCGATCCTGC 58.230 45.455 0.00 0.00 0.00 4.85
4 5 3.859411 TGCAAAAATACCAACCGATCC 57.141 42.857 0.00 0.00 0.00 3.36
5 6 5.516339 CAGATTGCAAAAATACCAACCGATC 59.484 40.000 1.71 0.00 0.00 3.69
6 7 5.047377 ACAGATTGCAAAAATACCAACCGAT 60.047 36.000 1.71 0.00 0.00 4.18
7 8 4.279671 ACAGATTGCAAAAATACCAACCGA 59.720 37.500 1.71 0.00 0.00 4.69
9 10 5.405269 GTGACAGATTGCAAAAATACCAACC 59.595 40.000 1.71 0.00 0.00 3.77
10 11 5.982516 TGTGACAGATTGCAAAAATACCAAC 59.017 36.000 1.71 0.00 0.00 3.77
11 12 5.982516 GTGTGACAGATTGCAAAAATACCAA 59.017 36.000 1.71 0.00 0.00 3.67
12 13 5.527951 GTGTGACAGATTGCAAAAATACCA 58.472 37.500 1.71 0.00 0.00 3.25
13 14 4.616802 CGTGTGACAGATTGCAAAAATACC 59.383 41.667 1.71 0.00 0.00 2.73
14 15 4.616802 CCGTGTGACAGATTGCAAAAATAC 59.383 41.667 1.71 0.00 0.00 1.89
15 16 4.277174 ACCGTGTGACAGATTGCAAAAATA 59.723 37.500 1.71 0.00 0.00 1.40
16 17 3.068024 ACCGTGTGACAGATTGCAAAAAT 59.932 39.130 1.71 0.00 0.00 1.82
17 18 2.425312 ACCGTGTGACAGATTGCAAAAA 59.575 40.909 1.71 0.00 0.00 1.94
18 19 2.020720 ACCGTGTGACAGATTGCAAAA 58.979 42.857 1.71 0.00 0.00 2.44
19 20 1.674359 ACCGTGTGACAGATTGCAAA 58.326 45.000 1.71 0.00 0.00 3.68
20 21 1.333308 CAACCGTGTGACAGATTGCAA 59.667 47.619 0.00 0.00 0.00 4.08
21 22 0.943673 CAACCGTGTGACAGATTGCA 59.056 50.000 0.00 0.00 0.00 4.08
23 24 2.949714 GTCAACCGTGTGACAGATTG 57.050 50.000 10.05 0.00 46.00 2.67
29 30 4.212425 TGTGATATTTGTCAACCGTGTGAC 59.788 41.667 8.40 8.40 46.74 3.67
31 32 4.213270 ACTGTGATATTTGTCAACCGTGTG 59.787 41.667 0.00 0.00 0.00 3.82
33 34 4.142902 GGACTGTGATATTTGTCAACCGTG 60.143 45.833 0.00 0.00 0.00 4.94
34 35 4.000988 GGACTGTGATATTTGTCAACCGT 58.999 43.478 0.00 0.00 0.00 4.83
35 36 4.000325 TGGACTGTGATATTTGTCAACCG 59.000 43.478 0.00 0.00 0.00 4.44
36 37 7.807977 ATATGGACTGTGATATTTGTCAACC 57.192 36.000 0.00 0.00 0.00 3.77
76 77 8.065473 AGTTCTTTTTCCCATTTTGCAAATTT 57.935 26.923 13.65 0.68 0.00 1.82
77 78 7.643569 AGTTCTTTTTCCCATTTTGCAAATT 57.356 28.000 13.65 6.74 0.00 1.82
78 79 8.620416 GTTAGTTCTTTTTCCCATTTTGCAAAT 58.380 29.630 13.65 0.39 0.00 2.32
79 80 7.607991 TGTTAGTTCTTTTTCCCATTTTGCAAA 59.392 29.630 8.05 8.05 0.00 3.68
80 81 7.106239 TGTTAGTTCTTTTTCCCATTTTGCAA 58.894 30.769 0.00 0.00 0.00 4.08
81 82 6.644347 TGTTAGTTCTTTTTCCCATTTTGCA 58.356 32.000 0.00 0.00 0.00 4.08
82 83 7.728847 ATGTTAGTTCTTTTTCCCATTTTGC 57.271 32.000 0.00 0.00 0.00 3.68
95 96 9.326413 CGTGGGATAGAATTTATGTTAGTTCTT 57.674 33.333 0.00 0.00 33.36 2.52
97 98 8.882415 TCGTGGGATAGAATTTATGTTAGTTC 57.118 34.615 0.00 0.00 0.00 3.01
98 99 7.441458 GCTCGTGGGATAGAATTTATGTTAGTT 59.559 37.037 0.00 0.00 0.00 2.24
100 101 6.929049 TGCTCGTGGGATAGAATTTATGTTAG 59.071 38.462 0.00 0.00 0.00 2.34
101 102 6.704493 GTGCTCGTGGGATAGAATTTATGTTA 59.296 38.462 0.00 0.00 0.00 2.41
102 103 5.527582 GTGCTCGTGGGATAGAATTTATGTT 59.472 40.000 0.00 0.00 0.00 2.71
103 104 5.057149 GTGCTCGTGGGATAGAATTTATGT 58.943 41.667 0.00 0.00 0.00 2.29
104 105 5.056480 TGTGCTCGTGGGATAGAATTTATG 58.944 41.667 0.00 0.00 0.00 1.90
105 106 5.290493 TGTGCTCGTGGGATAGAATTTAT 57.710 39.130 0.00 0.00 0.00 1.40
106 107 4.746535 TGTGCTCGTGGGATAGAATTTA 57.253 40.909 0.00 0.00 0.00 1.40
107 108 3.627395 TGTGCTCGTGGGATAGAATTT 57.373 42.857 0.00 0.00 0.00 1.82
108 109 3.495100 GGATGTGCTCGTGGGATAGAATT 60.495 47.826 0.00 0.00 0.00 2.17
109 110 2.037772 GGATGTGCTCGTGGGATAGAAT 59.962 50.000 0.00 0.00 0.00 2.40
110 111 1.412710 GGATGTGCTCGTGGGATAGAA 59.587 52.381 0.00 0.00 0.00 2.10
111 112 1.040646 GGATGTGCTCGTGGGATAGA 58.959 55.000 0.00 0.00 0.00 1.98
112 113 1.043816 AGGATGTGCTCGTGGGATAG 58.956 55.000 0.00 0.00 0.00 2.08
113 114 2.364324 GTTAGGATGTGCTCGTGGGATA 59.636 50.000 0.00 0.00 0.00 2.59
114 115 1.139058 GTTAGGATGTGCTCGTGGGAT 59.861 52.381 0.00 0.00 0.00 3.85
115 116 0.535335 GTTAGGATGTGCTCGTGGGA 59.465 55.000 0.00 0.00 0.00 4.37
117 118 0.108804 ACGTTAGGATGTGCTCGTGG 60.109 55.000 0.00 0.00 0.00 4.94
119 120 3.581024 TTTACGTTAGGATGTGCTCGT 57.419 42.857 0.00 0.00 35.73 4.18
120 121 6.764877 ATAATTTACGTTAGGATGTGCTCG 57.235 37.500 0.00 0.00 0.00 5.03
144 145 8.774586 GCAGAATAATGTGTACTCGGAATTATT 58.225 33.333 9.63 9.63 36.57 1.40
145 146 7.931407 TGCAGAATAATGTGTACTCGGAATTAT 59.069 33.333 0.00 0.00 0.00 1.28
146 147 7.223971 GTGCAGAATAATGTGTACTCGGAATTA 59.776 37.037 0.00 0.00 33.51 1.40
147 148 6.037172 GTGCAGAATAATGTGTACTCGGAATT 59.963 38.462 0.00 0.00 33.51 2.17
148 149 5.523916 GTGCAGAATAATGTGTACTCGGAAT 59.476 40.000 0.00 0.00 33.51 3.01
149 150 4.868171 GTGCAGAATAATGTGTACTCGGAA 59.132 41.667 0.00 0.00 33.51 4.30
150 151 4.159693 AGTGCAGAATAATGTGTACTCGGA 59.840 41.667 0.00 0.00 40.91 4.55
152 153 5.687730 CCTAGTGCAGAATAATGTGTACTCG 59.312 44.000 1.90 0.00 40.91 4.18
153 154 6.477033 CACCTAGTGCAGAATAATGTGTACTC 59.523 42.308 1.90 0.00 40.91 2.59
154 155 6.154534 TCACCTAGTGCAGAATAATGTGTACT 59.845 38.462 4.19 4.19 45.45 2.73
155 156 6.338146 TCACCTAGTGCAGAATAATGTGTAC 58.662 40.000 0.00 0.00 35.98 2.90
156 157 6.538945 TCACCTAGTGCAGAATAATGTGTA 57.461 37.500 0.00 0.00 32.98 2.90
158 159 5.877012 ACTTCACCTAGTGCAGAATAATGTG 59.123 40.000 1.39 0.00 31.69 3.21
159 160 5.877012 CACTTCACCTAGTGCAGAATAATGT 59.123 40.000 1.39 0.00 39.12 2.71
160 161 5.295292 CCACTTCACCTAGTGCAGAATAATG 59.705 44.000 1.39 0.00 43.31 1.90
161 162 5.431765 CCACTTCACCTAGTGCAGAATAAT 58.568 41.667 1.39 0.00 43.31 1.28
162 163 4.832248 CCACTTCACCTAGTGCAGAATAA 58.168 43.478 1.39 0.00 43.31 1.40
165 166 1.270839 GCCACTTCACCTAGTGCAGAA 60.271 52.381 1.39 0.00 43.31 3.02
167 168 0.035317 TGCCACTTCACCTAGTGCAG 59.965 55.000 0.00 0.00 43.31 4.41
168 169 0.250295 GTGCCACTTCACCTAGTGCA 60.250 55.000 0.00 0.00 43.31 4.57
169 170 1.291877 CGTGCCACTTCACCTAGTGC 61.292 60.000 0.00 0.00 43.31 4.40
170 171 0.033504 ACGTGCCACTTCACCTAGTG 59.966 55.000 0.00 0.00 44.07 2.74
171 172 0.317479 GACGTGCCACTTCACCTAGT 59.683 55.000 0.00 0.00 33.57 2.57
172 173 0.389948 GGACGTGCCACTTCACCTAG 60.390 60.000 3.60 0.00 36.34 3.02
173 174 0.830444 AGGACGTGCCACTTCACCTA 60.830 55.000 2.38 0.00 40.02 3.08
174 175 1.696097 AAGGACGTGCCACTTCACCT 61.696 55.000 2.38 0.00 40.02 4.00
175 176 0.818040 AAAGGACGTGCCACTTCACC 60.818 55.000 2.38 0.00 40.02 4.02
176 177 1.021968 AAAAGGACGTGCCACTTCAC 58.978 50.000 2.38 0.00 40.02 3.18
177 178 1.021202 CAAAAGGACGTGCCACTTCA 58.979 50.000 2.38 0.00 40.02 3.02
178 179 1.021968 ACAAAAGGACGTGCCACTTC 58.978 50.000 2.38 0.00 40.02 3.01
180 181 0.738389 CAACAAAAGGACGTGCCACT 59.262 50.000 2.38 0.00 40.02 4.00
181 182 0.248866 CCAACAAAAGGACGTGCCAC 60.249 55.000 2.38 0.00 40.02 5.01
182 183 0.394488 TCCAACAAAAGGACGTGCCA 60.394 50.000 2.38 0.00 40.02 4.92
183 184 0.958822 ATCCAACAAAAGGACGTGCC 59.041 50.000 2.38 0.00 38.13 5.01
184 185 2.393764 CAATCCAACAAAAGGACGTGC 58.606 47.619 0.00 0.00 38.13 5.34
186 187 1.339929 GGCAATCCAACAAAAGGACGT 59.660 47.619 0.00 0.00 38.13 4.34
188 189 2.351738 CGAGGCAATCCAACAAAAGGAC 60.352 50.000 0.00 0.00 38.13 3.85
189 190 1.885887 CGAGGCAATCCAACAAAAGGA 59.114 47.619 0.00 0.00 39.97 3.36
190 191 1.067635 CCGAGGCAATCCAACAAAAGG 60.068 52.381 0.00 0.00 33.74 3.11
193 194 0.178975 ACCCGAGGCAATCCAACAAA 60.179 50.000 0.00 0.00 33.74 2.83
194 195 0.608035 GACCCGAGGCAATCCAACAA 60.608 55.000 0.00 0.00 33.74 2.83
195 196 1.002624 GACCCGAGGCAATCCAACA 60.003 57.895 0.00 0.00 33.74 3.33
196 197 2.106683 CGACCCGAGGCAATCCAAC 61.107 63.158 0.00 0.00 33.74 3.77
198 199 4.467084 GCGACCCGAGGCAATCCA 62.467 66.667 0.00 0.00 33.74 3.41
199 200 4.162690 AGCGACCCGAGGCAATCC 62.163 66.667 0.00 0.00 0.00 3.01
200 201 2.892425 CAGCGACCCGAGGCAATC 60.892 66.667 0.00 0.00 0.00 2.67
205 206 4.796231 CGAACCAGCGACCCGAGG 62.796 72.222 0.00 0.00 0.00 4.63
206 207 4.796231 CCGAACCAGCGACCCGAG 62.796 72.222 0.00 0.00 0.00 4.63
208 209 4.367023 TTCCGAACCAGCGACCCG 62.367 66.667 0.00 0.00 0.00 5.28
209 210 2.741211 GTTCCGAACCAGCGACCC 60.741 66.667 0.00 0.00 0.00 4.46
225 226 3.778250 AAAAATAAGCCCGTGGGGT 57.222 47.368 3.18 3.18 46.51 4.95
295 296 9.528489 AGTGACATAAATGTATACCCAACTTTT 57.472 29.630 0.00 0.00 41.95 2.27
296 297 8.956426 CAGTGACATAAATGTATACCCAACTTT 58.044 33.333 0.00 0.00 41.95 2.66
297 298 8.325787 TCAGTGACATAAATGTATACCCAACTT 58.674 33.333 0.00 0.00 41.95 2.66
298 299 7.857456 TCAGTGACATAAATGTATACCCAACT 58.143 34.615 0.00 0.00 41.95 3.16
300 301 7.768582 CACTCAGTGACATAAATGTATACCCAA 59.231 37.037 0.00 0.00 41.95 4.12
301 302 7.093068 ACACTCAGTGACATAAATGTATACCCA 60.093 37.037 13.14 0.00 41.95 4.51
302 303 7.272978 ACACTCAGTGACATAAATGTATACCC 58.727 38.462 13.14 0.00 41.95 3.69
304 305 9.464714 CCTACACTCAGTGACATAAATGTATAC 57.535 37.037 13.14 0.00 41.95 1.47
306 307 7.125811 ACCCTACACTCAGTGACATAAATGTAT 59.874 37.037 13.14 0.00 41.95 2.29
307 308 6.439375 ACCCTACACTCAGTGACATAAATGTA 59.561 38.462 13.14 0.00 41.95 2.29
308 309 5.248477 ACCCTACACTCAGTGACATAAATGT 59.752 40.000 13.14 0.00 45.16 2.71
310 311 5.338381 CCACCCTACACTCAGTGACATAAAT 60.338 44.000 13.14 0.00 36.96 1.40
311 312 4.020573 CCACCCTACACTCAGTGACATAAA 60.021 45.833 13.14 0.00 36.96 1.40
312 313 3.513912 CCACCCTACACTCAGTGACATAA 59.486 47.826 13.14 0.00 36.96 1.90
313 314 3.096852 CCACCCTACACTCAGTGACATA 58.903 50.000 13.14 0.00 36.96 2.29
314 315 1.902508 CCACCCTACACTCAGTGACAT 59.097 52.381 13.14 0.00 36.96 3.06
315 316 1.338107 CCACCCTACACTCAGTGACA 58.662 55.000 13.14 0.00 36.96 3.58
318 319 0.243907 CGACCACCCTACACTCAGTG 59.756 60.000 2.22 2.22 39.75 3.66
320 321 1.215647 GCGACCACCCTACACTCAG 59.784 63.158 0.00 0.00 0.00 3.35
321 322 2.280552 GGCGACCACCCTACACTCA 61.281 63.158 0.00 0.00 0.00 3.41
324 325 2.264794 CAGGCGACCACCCTACAC 59.735 66.667 0.00 0.00 0.00 2.90
327 328 3.305619 TAGCCAGGCGACCACCCTA 62.306 63.158 5.55 0.00 0.00 3.53
328 329 4.715130 TAGCCAGGCGACCACCCT 62.715 66.667 5.55 0.00 0.00 4.34
329 330 4.162690 CTAGCCAGGCGACCACCC 62.163 72.222 5.55 0.00 0.00 4.61
330 331 4.840005 GCTAGCCAGGCGACCACC 62.840 72.222 5.55 0.00 0.00 4.61
331 332 4.082523 TGCTAGCCAGGCGACCAC 62.083 66.667 13.29 0.00 0.00 4.16
332 333 3.774528 CTGCTAGCCAGGCGACCA 61.775 66.667 13.29 3.24 37.93 4.02
333 334 3.775654 ACTGCTAGCCAGGCGACC 61.776 66.667 13.29 0.00 46.14 4.79
334 335 2.510238 CACTGCTAGCCAGGCGAC 60.510 66.667 13.29 0.00 46.14 5.19
340 341 1.448365 CATCGTGCACTGCTAGCCA 60.448 57.895 16.19 0.00 0.00 4.75
341 342 2.176273 CCATCGTGCACTGCTAGCC 61.176 63.158 16.19 0.00 0.00 3.93
342 343 1.021390 AACCATCGTGCACTGCTAGC 61.021 55.000 16.19 8.10 0.00 3.42
343 344 1.129251 CAAACCATCGTGCACTGCTAG 59.871 52.381 16.19 0.00 0.00 3.42
344 345 1.155889 CAAACCATCGTGCACTGCTA 58.844 50.000 16.19 0.00 0.00 3.49
345 346 1.951510 CAAACCATCGTGCACTGCT 59.048 52.632 16.19 0.00 0.00 4.24
346 347 1.730547 GCAAACCATCGTGCACTGC 60.731 57.895 16.19 12.14 40.58 4.40
347 348 1.081242 GGCAAACCATCGTGCACTG 60.081 57.895 16.19 7.22 42.74 3.66
348 349 2.268076 GGGCAAACCATCGTGCACT 61.268 57.895 16.19 0.00 41.13 4.40
350 351 3.361158 CGGGCAAACCATCGTGCA 61.361 61.111 0.00 0.00 42.74 4.57
353 354 2.046314 CCTCGGGCAAACCATCGT 60.046 61.111 0.00 0.00 40.22 3.73
354 355 1.644786 GAACCTCGGGCAAACCATCG 61.645 60.000 0.00 0.00 40.22 3.84
355 356 0.608035 TGAACCTCGGGCAAACCATC 60.608 55.000 0.00 0.00 40.22 3.51
357 358 0.395862 TTTGAACCTCGGGCAAACCA 60.396 50.000 0.00 0.00 40.22 3.67
358 359 0.966179 ATTTGAACCTCGGGCAAACC 59.034 50.000 7.94 0.00 34.72 3.27
359 360 1.886542 AGATTTGAACCTCGGGCAAAC 59.113 47.619 7.94 4.42 34.72 2.93
360 361 2.286365 AGATTTGAACCTCGGGCAAA 57.714 45.000 8.13 8.13 36.15 3.68
361 362 1.885887 CAAGATTTGAACCTCGGGCAA 59.114 47.619 0.00 0.00 0.00 4.52
363 364 0.811281 CCAAGATTTGAACCTCGGGC 59.189 55.000 0.00 0.00 0.00 6.13
364 365 2.489938 TCCAAGATTTGAACCTCGGG 57.510 50.000 0.00 0.00 0.00 5.14
367 368 5.221126 GGCATACATCCAAGATTTGAACCTC 60.221 44.000 0.00 0.00 0.00 3.85
368 369 4.646492 GGCATACATCCAAGATTTGAACCT 59.354 41.667 0.00 0.00 0.00 3.50
369 370 4.402155 TGGCATACATCCAAGATTTGAACC 59.598 41.667 0.00 0.00 0.00 3.62
371 372 5.015515 TGTGGCATACATCCAAGATTTGAA 58.984 37.500 0.00 0.00 35.01 2.69
375 376 4.603131 ACTTGTGGCATACATCCAAGATT 58.397 39.130 17.06 0.00 39.48 2.40
376 377 4.240881 ACTTGTGGCATACATCCAAGAT 57.759 40.909 17.06 2.73 39.48 2.40
377 378 3.719268 ACTTGTGGCATACATCCAAGA 57.281 42.857 17.06 0.00 39.48 3.02
379 380 3.758023 CAGAACTTGTGGCATACATCCAA 59.242 43.478 0.00 0.00 39.48 3.53
384 385 2.105649 TCACCAGAACTTGTGGCATACA 59.894 45.455 4.84 0.00 38.83 2.29
386 387 3.500448 TTCACCAGAACTTGTGGCATA 57.500 42.857 4.84 0.00 38.83 3.14
387 388 2.363306 TTCACCAGAACTTGTGGCAT 57.637 45.000 4.84 0.00 38.83 4.40
388 389 2.136298 TTTCACCAGAACTTGTGGCA 57.864 45.000 4.84 0.00 38.83 4.92
389 390 3.733443 ATTTTCACCAGAACTTGTGGC 57.267 42.857 4.84 0.00 38.83 5.01
390 391 5.772521 CCTTATTTTCACCAGAACTTGTGG 58.227 41.667 3.36 3.36 41.30 4.17
391 392 5.222631 GCCTTATTTTCACCAGAACTTGTG 58.777 41.667 0.00 0.00 32.39 3.33
392 393 4.023193 CGCCTTATTTTCACCAGAACTTGT 60.023 41.667 0.00 0.00 32.39 3.16
394 395 4.023193 CACGCCTTATTTTCACCAGAACTT 60.023 41.667 0.00 0.00 32.39 2.66
395 396 3.502211 CACGCCTTATTTTCACCAGAACT 59.498 43.478 0.00 0.00 32.39 3.01
396 397 3.252458 ACACGCCTTATTTTCACCAGAAC 59.748 43.478 0.00 0.00 32.39 3.01
397 398 3.252215 CACACGCCTTATTTTCACCAGAA 59.748 43.478 0.00 0.00 0.00 3.02
400 401 1.883275 CCACACGCCTTATTTTCACCA 59.117 47.619 0.00 0.00 0.00 4.17
402 403 2.292292 ACACCACACGCCTTATTTTCAC 59.708 45.455 0.00 0.00 0.00 3.18
403 404 2.292016 CACACCACACGCCTTATTTTCA 59.708 45.455 0.00 0.00 0.00 2.69
405 406 1.000717 GCACACCACACGCCTTATTTT 60.001 47.619 0.00 0.00 0.00 1.82
407 408 0.250727 AGCACACCACACGCCTTATT 60.251 50.000 0.00 0.00 0.00 1.40
408 409 0.611200 TAGCACACCACACGCCTTAT 59.389 50.000 0.00 0.00 0.00 1.73
409 410 0.393448 TTAGCACACCACACGCCTTA 59.607 50.000 0.00 0.00 0.00 2.69
410 411 1.147376 TTAGCACACCACACGCCTT 59.853 52.632 0.00 0.00 0.00 4.35
411 412 1.597027 GTTAGCACACCACACGCCT 60.597 57.895 0.00 0.00 0.00 5.52
412 413 2.613506 GGTTAGCACACCACACGCC 61.614 63.158 0.00 0.00 36.73 5.68
413 414 2.943653 GGTTAGCACACCACACGC 59.056 61.111 0.00 0.00 36.73 5.34
414 415 1.155424 AACGGTTAGCACACCACACG 61.155 55.000 5.27 0.00 36.49 4.49
415 416 1.018910 AAACGGTTAGCACACCACAC 58.981 50.000 5.27 0.00 36.49 3.82
417 418 2.855660 AAAAACGGTTAGCACACCAC 57.144 45.000 5.27 0.00 36.49 4.16
418 419 3.065095 GTGTAAAAACGGTTAGCACACCA 59.935 43.478 15.42 0.00 36.49 4.17
419 420 3.548616 GGTGTAAAAACGGTTAGCACACC 60.549 47.826 23.44 23.44 45.28 4.16
420 421 3.065095 TGGTGTAAAAACGGTTAGCACAC 59.935 43.478 16.94 16.94 35.28 3.82
422 423 3.313249 AGTGGTGTAAAAACGGTTAGCAC 59.687 43.478 12.57 12.57 36.95 4.40
423 424 3.543665 AGTGGTGTAAAAACGGTTAGCA 58.456 40.909 0.00 0.00 0.00 3.49
424 425 4.556942 AAGTGGTGTAAAAACGGTTAGC 57.443 40.909 0.00 0.00 0.00 3.09
426 427 6.095160 ACATCAAAGTGGTGTAAAAACGGTTA 59.905 34.615 0.00 0.00 40.46 2.85
427 428 5.105675 ACATCAAAGTGGTGTAAAAACGGTT 60.106 36.000 0.00 0.00 40.46 4.44
428 429 4.399934 ACATCAAAGTGGTGTAAAAACGGT 59.600 37.500 0.00 0.00 40.46 4.83
429 430 4.737765 CACATCAAAGTGGTGTAAAAACGG 59.262 41.667 0.00 0.00 40.24 4.44
430 431 5.864830 CACATCAAAGTGGTGTAAAAACG 57.135 39.130 0.00 0.00 40.24 3.60
441 442 0.040157 CCACACGCCACATCAAAGTG 60.040 55.000 0.00 0.00 39.21 3.16
442 443 0.465460 ACCACACGCCACATCAAAGT 60.465 50.000 0.00 0.00 0.00 2.66
444 445 0.749818 ACACCACACGCCACATCAAA 60.750 50.000 0.00 0.00 0.00 2.69
445 446 1.153066 ACACCACACGCCACATCAA 60.153 52.632 0.00 0.00 0.00 2.57
446 447 1.891449 CACACCACACGCCACATCA 60.891 57.895 0.00 0.00 0.00 3.07
447 448 2.945984 CACACCACACGCCACATC 59.054 61.111 0.00 0.00 0.00 3.06
448 449 2.390306 TAGCACACCACACGCCACAT 62.390 55.000 0.00 0.00 0.00 3.21
449 450 2.595009 TTAGCACACCACACGCCACA 62.595 55.000 0.00 0.00 0.00 4.17
450 451 1.234615 ATTAGCACACCACACGCCAC 61.235 55.000 0.00 0.00 0.00 5.01
451 452 0.953471 GATTAGCACACCACACGCCA 60.953 55.000 0.00 0.00 0.00 5.69
452 453 0.953471 TGATTAGCACACCACACGCC 60.953 55.000 0.00 0.00 0.00 5.68
453 454 0.165944 GTGATTAGCACACCACACGC 59.834 55.000 0.00 0.00 46.91 5.34
462 463 3.808728 TGATTAGCCAGGTGATTAGCAC 58.191 45.455 0.00 0.00 46.98 4.40
463 464 4.712051 ATGATTAGCCAGGTGATTAGCA 57.288 40.909 0.00 0.00 0.00 3.49
464 465 6.396829 AAAATGATTAGCCAGGTGATTAGC 57.603 37.500 0.00 0.00 0.00 3.09
465 466 9.342308 TCTAAAAATGATTAGCCAGGTGATTAG 57.658 33.333 0.00 0.00 33.74 1.73
467 468 7.068716 GGTCTAAAAATGATTAGCCAGGTGATT 59.931 37.037 0.00 0.00 33.74 2.57
468 469 6.547510 GGTCTAAAAATGATTAGCCAGGTGAT 59.452 38.462 0.00 0.00 33.74 3.06
469 470 5.885912 GGTCTAAAAATGATTAGCCAGGTGA 59.114 40.000 0.00 0.00 33.74 4.02
470 471 5.652014 TGGTCTAAAAATGATTAGCCAGGTG 59.348 40.000 0.00 0.00 35.78 4.00
471 472 5.652452 GTGGTCTAAAAATGATTAGCCAGGT 59.348 40.000 11.05 0.00 38.52 4.00
473 474 7.396540 AAGTGGTCTAAAAATGATTAGCCAG 57.603 36.000 11.05 0.00 38.52 4.85
474 475 7.775053 AAAGTGGTCTAAAAATGATTAGCCA 57.225 32.000 0.00 0.00 37.05 4.75
484 485 8.301002 GTGGCATACATTAAAGTGGTCTAAAAA 58.699 33.333 0.00 0.00 0.00 1.94
486 487 6.943146 TGTGGCATACATTAAAGTGGTCTAAA 59.057 34.615 0.00 0.00 33.42 1.85
487 488 6.477253 TGTGGCATACATTAAAGTGGTCTAA 58.523 36.000 0.00 0.00 33.42 2.10
488 489 6.056090 TGTGGCATACATTAAAGTGGTCTA 57.944 37.500 0.00 0.00 33.42 2.59
489 490 4.917385 TGTGGCATACATTAAAGTGGTCT 58.083 39.130 0.00 0.00 33.42 3.85
490 491 5.183140 ACTTGTGGCATACATTAAAGTGGTC 59.817 40.000 0.00 0.00 39.48 4.02
492 493 5.393027 GGACTTGTGGCATACATTAAAGTGG 60.393 44.000 0.00 0.00 39.48 4.00
493 494 5.415701 AGGACTTGTGGCATACATTAAAGTG 59.584 40.000 0.00 0.00 39.48 3.16
494 495 5.570320 AGGACTTGTGGCATACATTAAAGT 58.430 37.500 0.00 0.00 39.48 2.66
495 496 6.238484 GCTAGGACTTGTGGCATACATTAAAG 60.238 42.308 0.00 0.00 39.48 1.85
497 498 5.123227 GCTAGGACTTGTGGCATACATTAA 58.877 41.667 0.00 0.00 39.48 1.40
498 499 4.163268 TGCTAGGACTTGTGGCATACATTA 59.837 41.667 0.00 0.00 39.48 1.90
500 501 2.505407 TGCTAGGACTTGTGGCATACAT 59.495 45.455 0.00 0.00 39.48 2.29
501 502 1.905894 TGCTAGGACTTGTGGCATACA 59.094 47.619 0.00 0.00 37.56 2.29
502 503 2.691409 TGCTAGGACTTGTGGCATAC 57.309 50.000 0.00 0.00 0.00 2.39
504 505 2.814805 AATGCTAGGACTTGTGGCAT 57.185 45.000 0.00 0.00 44.09 4.40
505 506 3.712016 TTAATGCTAGGACTTGTGGCA 57.288 42.857 0.00 0.00 37.32 4.92
507 508 7.254455 CGATTACTTTAATGCTAGGACTTGTGG 60.254 40.741 0.00 0.00 0.00 4.17
509 510 7.328737 ACGATTACTTTAATGCTAGGACTTGT 58.671 34.615 0.00 0.00 0.00 3.16
510 511 7.772332 ACGATTACTTTAATGCTAGGACTTG 57.228 36.000 0.00 0.00 0.00 3.16
511 512 8.665685 CAAACGATTACTTTAATGCTAGGACTT 58.334 33.333 0.00 0.00 0.00 3.01
512 513 7.201617 GCAAACGATTACTTTAATGCTAGGACT 60.202 37.037 0.00 0.00 0.00 3.85
513 514 6.905609 GCAAACGATTACTTTAATGCTAGGAC 59.094 38.462 0.00 0.00 0.00 3.85
514 515 6.237996 CGCAAACGATTACTTTAATGCTAGGA 60.238 38.462 0.00 0.00 43.93 2.94
515 516 5.901884 CGCAAACGATTACTTTAATGCTAGG 59.098 40.000 0.00 0.00 43.93 3.02
517 518 6.091034 TGACGCAAACGATTACTTTAATGCTA 59.909 34.615 0.00 0.00 43.93 3.49
518 519 5.106869 TGACGCAAACGATTACTTTAATGCT 60.107 36.000 0.00 0.00 43.93 3.79
519 520 5.083389 TGACGCAAACGATTACTTTAATGC 58.917 37.500 0.00 0.00 43.93 3.56
520 521 6.795114 ACTTGACGCAAACGATTACTTTAATG 59.205 34.615 0.00 0.00 43.93 1.90
521 522 6.894828 ACTTGACGCAAACGATTACTTTAAT 58.105 32.000 0.00 0.00 43.93 1.40
522 523 6.289745 ACTTGACGCAAACGATTACTTTAA 57.710 33.333 0.00 0.00 43.93 1.52
523 524 5.910637 ACTTGACGCAAACGATTACTTTA 57.089 34.783 0.00 0.00 43.93 1.85
524 525 4.806342 ACTTGACGCAAACGATTACTTT 57.194 36.364 0.00 0.00 43.93 2.66
526 527 4.056050 AGAACTTGACGCAAACGATTACT 58.944 39.130 0.00 0.00 43.93 2.24
528 529 4.090930 GCTAGAACTTGACGCAAACGATTA 59.909 41.667 0.00 0.00 43.93 1.75
529 530 3.120649 GCTAGAACTTGACGCAAACGATT 60.121 43.478 0.00 0.00 43.93 3.34
538 539 1.429463 GGTGGTGCTAGAACTTGACG 58.571 55.000 0.00 0.00 0.00 4.35
539 540 1.429463 CGGTGGTGCTAGAACTTGAC 58.571 55.000 0.00 0.00 0.00 3.18
540 541 0.320374 CCGGTGGTGCTAGAACTTGA 59.680 55.000 0.00 0.00 0.00 3.02
541 542 0.034896 ACCGGTGGTGCTAGAACTTG 59.965 55.000 6.12 0.00 32.98 3.16
542 543 2.448749 ACCGGTGGTGCTAGAACTT 58.551 52.632 6.12 0.00 32.98 2.66
543 544 4.210158 ACCGGTGGTGCTAGAACT 57.790 55.556 6.12 0.00 32.98 3.01
552 553 3.097342 AGAGTCTATTACACCGGTGGT 57.903 47.619 36.47 23.92 35.62 4.16
555 556 4.702131 ACGTAAAGAGTCTATTACACCGGT 59.298 41.667 0.00 0.00 32.75 5.28
556 557 5.240713 ACGTAAAGAGTCTATTACACCGG 57.759 43.478 17.67 0.00 32.75 5.28
557 558 5.163723 TGGACGTAAAGAGTCTATTACACCG 60.164 44.000 17.67 10.86 38.58 4.94
558 559 6.094603 TCTGGACGTAAAGAGTCTATTACACC 59.905 42.308 17.67 17.95 38.58 4.16
560 561 6.656270 TGTCTGGACGTAAAGAGTCTATTACA 59.344 38.462 17.67 3.71 38.58 2.41
561 562 6.966066 GTGTCTGGACGTAAAGAGTCTATTAC 59.034 42.308 0.00 4.39 38.58 1.89
563 564 5.475909 TGTGTCTGGACGTAAAGAGTCTATT 59.524 40.000 0.00 0.00 38.58 1.73
566 567 3.220110 TGTGTCTGGACGTAAAGAGTCT 58.780 45.455 0.05 0.00 38.58 3.24
567 568 3.637998 TGTGTCTGGACGTAAAGAGTC 57.362 47.619 0.05 0.00 37.86 3.36
569 570 4.106197 GCTATGTGTCTGGACGTAAAGAG 58.894 47.826 0.05 0.00 0.00 2.85
570 571 3.119245 GGCTATGTGTCTGGACGTAAAGA 60.119 47.826 0.00 0.00 0.00 2.52
571 572 3.187700 GGCTATGTGTCTGGACGTAAAG 58.812 50.000 0.00 0.00 0.00 1.85
572 573 2.093869 GGGCTATGTGTCTGGACGTAAA 60.094 50.000 0.00 0.00 0.00 2.01
573 574 1.479323 GGGCTATGTGTCTGGACGTAA 59.521 52.381 0.00 0.00 0.00 3.18
574 575 1.108776 GGGCTATGTGTCTGGACGTA 58.891 55.000 0.00 0.00 0.00 3.57
575 576 0.902984 TGGGCTATGTGTCTGGACGT 60.903 55.000 0.00 0.00 0.00 4.34
577 578 2.292267 CAATGGGCTATGTGTCTGGAC 58.708 52.381 0.00 0.00 0.00 4.02
578 579 1.212688 CCAATGGGCTATGTGTCTGGA 59.787 52.381 0.00 0.00 0.00 3.86
579 580 1.683943 CCAATGGGCTATGTGTCTGG 58.316 55.000 0.00 0.00 0.00 3.86
591 592 4.202346 TGAGAAAAGAAAAAGGCCAATGGG 60.202 41.667 5.01 0.00 37.18 4.00
592 593 4.751600 GTGAGAAAAGAAAAAGGCCAATGG 59.248 41.667 5.01 0.00 0.00 3.16
593 594 4.445385 CGTGAGAAAAGAAAAAGGCCAATG 59.555 41.667 5.01 0.00 0.00 2.82
594 595 4.099419 ACGTGAGAAAAGAAAAAGGCCAAT 59.901 37.500 5.01 0.00 0.00 3.16
595 596 3.445805 ACGTGAGAAAAGAAAAAGGCCAA 59.554 39.130 5.01 0.00 0.00 4.52
596 597 3.020984 ACGTGAGAAAAGAAAAAGGCCA 58.979 40.909 5.01 0.00 0.00 5.36
597 598 3.710326 ACGTGAGAAAAGAAAAAGGCC 57.290 42.857 0.00 0.00 0.00 5.19
598 599 4.974275 GGTTACGTGAGAAAAGAAAAAGGC 59.026 41.667 0.00 0.00 0.00 4.35
599 600 6.126568 TGGTTACGTGAGAAAAGAAAAAGG 57.873 37.500 0.00 0.00 0.00 3.11
600 601 7.801783 GGTATGGTTACGTGAGAAAAGAAAAAG 59.198 37.037 0.00 0.00 0.00 2.27
601 602 7.499895 AGGTATGGTTACGTGAGAAAAGAAAAA 59.500 33.333 0.00 0.00 0.00 1.94
602 603 6.993902 AGGTATGGTTACGTGAGAAAAGAAAA 59.006 34.615 0.00 0.00 0.00 2.29
603 604 6.425721 CAGGTATGGTTACGTGAGAAAAGAAA 59.574 38.462 0.00 0.00 43.62 2.52
604 605 5.929992 CAGGTATGGTTACGTGAGAAAAGAA 59.070 40.000 0.00 0.00 43.62 2.52
605 606 5.011329 ACAGGTATGGTTACGTGAGAAAAGA 59.989 40.000 11.50 0.00 43.62 2.52
606 607 5.235516 ACAGGTATGGTTACGTGAGAAAAG 58.764 41.667 11.50 0.00 43.62 2.27
607 608 5.217978 ACAGGTATGGTTACGTGAGAAAA 57.782 39.130 11.50 0.00 43.62 2.29
608 609 4.877378 ACAGGTATGGTTACGTGAGAAA 57.123 40.909 11.50 0.00 43.62 2.52
609 610 4.877378 AACAGGTATGGTTACGTGAGAA 57.123 40.909 11.50 0.00 43.62 2.87
610 611 5.419788 ACATAACAGGTATGGTTACGTGAGA 59.580 40.000 10.36 1.63 43.62 3.27
611 612 5.657474 ACATAACAGGTATGGTTACGTGAG 58.343 41.667 10.36 3.34 43.62 3.51
614 615 5.664294 TGACATAACAGGTATGGTTACGT 57.336 39.130 10.36 0.00 43.53 3.57
615 616 6.046593 ACATGACATAACAGGTATGGTTACG 58.953 40.000 10.36 0.00 43.53 3.18
616 617 7.011109 GTGACATGACATAACAGGTATGGTTAC 59.989 40.741 10.36 1.89 43.53 2.50
617 618 7.045416 GTGACATGACATAACAGGTATGGTTA 58.955 38.462 10.36 0.00 43.53 2.85
618 619 5.880332 GTGACATGACATAACAGGTATGGTT 59.120 40.000 10.36 0.00 43.53 3.67
619 620 5.428253 GTGACATGACATAACAGGTATGGT 58.572 41.667 10.36 0.00 43.53 3.55
621 622 5.427378 TGGTGACATGACATAACAGGTATG 58.573 41.667 3.69 3.69 39.89 2.39
622 623 5.692115 TGGTGACATGACATAACAGGTAT 57.308 39.130 0.00 0.00 34.97 2.73
623 624 5.242434 GTTGGTGACATGACATAACAGGTA 58.758 41.667 16.89 0.00 42.32 3.08
624 625 4.072131 GTTGGTGACATGACATAACAGGT 58.928 43.478 16.89 0.00 42.32 4.00
625 626 3.440173 GGTTGGTGACATGACATAACAGG 59.560 47.826 20.51 0.00 42.32 4.00
626 627 4.071423 TGGTTGGTGACATGACATAACAG 58.929 43.478 20.51 0.00 42.32 3.16
627 628 4.092116 TGGTTGGTGACATGACATAACA 57.908 40.909 20.51 11.10 42.32 2.41
629 630 3.443329 GCATGGTTGGTGACATGACATAA 59.557 43.478 0.00 0.00 45.55 1.90
630 631 3.016031 GCATGGTTGGTGACATGACATA 58.984 45.455 0.00 0.00 45.55 2.29
631 632 1.820519 GCATGGTTGGTGACATGACAT 59.179 47.619 0.00 0.00 45.55 3.06
632 633 1.202915 AGCATGGTTGGTGACATGACA 60.203 47.619 0.00 0.00 45.55 3.58
634 635 3.650281 ATAGCATGGTTGGTGACATGA 57.350 42.857 1.12 0.00 45.55 3.07
638 639 3.885297 AGCATAATAGCATGGTTGGTGAC 59.115 43.478 1.12 0.00 32.89 3.67
639 640 4.169059 AGCATAATAGCATGGTTGGTGA 57.831 40.909 1.12 0.00 32.89 4.02
652 4827 5.878116 GGTGACAGGTGTGTTTAGCATAATA 59.122 40.000 0.00 0.00 36.88 0.98
654 4829 4.069304 GGTGACAGGTGTGTTTAGCATAA 58.931 43.478 0.00 0.00 36.88 1.90
681 4856 1.154225 CGGCATTGGCAAACGAGAC 60.154 57.895 3.01 0.00 43.71 3.36
683 4858 1.302383 TACCGGCATTGGCAAACGAG 61.302 55.000 19.29 13.22 43.71 4.18
691 4866 4.273480 CAGAGAGTAAAATACCGGCATTGG 59.727 45.833 0.00 0.00 0.00 3.16
694 4869 3.709653 TCCAGAGAGTAAAATACCGGCAT 59.290 43.478 0.00 0.00 0.00 4.40
696 4871 3.718815 CTCCAGAGAGTAAAATACCGGC 58.281 50.000 0.00 0.00 35.21 6.13
699 4874 5.086104 TGTGCTCCAGAGAGTAAAATACC 57.914 43.478 0.00 0.00 42.59 2.73
711 4886 0.401356 TGCAAGGAATGTGCTCCAGA 59.599 50.000 0.00 0.00 42.69 3.86
717 4892 0.388659 TTGGTGTGCAAGGAATGTGC 59.611 50.000 0.00 0.00 42.55 4.57
725 4900 2.292016 TCGGTGTTTATTGGTGTGCAAG 59.708 45.455 0.00 0.00 0.00 4.01
736 4911 2.227388 ACTTCTCGTCGTCGGTGTTTAT 59.773 45.455 1.55 0.00 37.69 1.40
737 4912 1.603802 ACTTCTCGTCGTCGGTGTTTA 59.396 47.619 1.55 0.00 37.69 2.01
739 4914 0.317603 CACTTCTCGTCGTCGGTGTT 60.318 55.000 1.55 0.00 37.69 3.32
740 4915 1.281960 CACTTCTCGTCGTCGGTGT 59.718 57.895 1.55 0.00 37.69 4.16
741 4916 2.081212 GCACTTCTCGTCGTCGGTG 61.081 63.158 1.55 3.73 37.69 4.94
743 4918 2.504244 GGCACTTCTCGTCGTCGG 60.504 66.667 1.55 0.00 37.69 4.79
744 4919 1.154016 ATGGCACTTCTCGTCGTCG 60.154 57.895 0.00 0.00 38.55 5.12
745 4920 1.687494 GCATGGCACTTCTCGTCGTC 61.687 60.000 0.00 0.00 0.00 4.20
804 5001 2.654877 GCCGAGTTTCCACGAGGA 59.345 61.111 0.00 0.00 43.93 3.71
849 5046 4.329545 GAGCTCGGGGTTGGTGCA 62.330 66.667 0.00 0.00 0.00 4.57
862 5059 2.170012 TAAATAGGTGTCCCGGAGCT 57.830 50.000 0.73 0.00 35.12 4.09
919 5116 2.803956 GGTTGCGTTGCTAGTGAAAGTA 59.196 45.455 0.00 0.00 0.00 2.24
920 5117 1.602377 GGTTGCGTTGCTAGTGAAAGT 59.398 47.619 0.00 0.00 0.00 2.66
924 5141 1.666553 CGGGTTGCGTTGCTAGTGA 60.667 57.895 0.00 0.00 0.00 3.41
935 9556 3.426568 GCTCAGTCAGCGGGTTGC 61.427 66.667 0.00 0.00 46.98 4.17
978 9599 1.063174 GCTGCGGTGATCAACTGATTC 59.937 52.381 9.52 0.00 37.33 2.52
981 9602 0.250252 TTGCTGCGGTGATCAACTGA 60.250 50.000 9.52 0.00 37.33 3.41
982 9603 0.806868 ATTGCTGCGGTGATCAACTG 59.193 50.000 9.52 3.71 38.30 3.16
1169 9790 2.640316 ACCTGAGGTGAAGTTGAACC 57.360 50.000 1.77 0.00 32.98 3.62
1209 9830 3.605634 GTGACATGCATGGGTTGTAGTA 58.394 45.455 29.41 3.27 0.00 1.82
1210 9831 2.436417 GTGACATGCATGGGTTGTAGT 58.564 47.619 29.41 6.76 0.00 2.73
1211 9832 1.745087 GGTGACATGCATGGGTTGTAG 59.255 52.381 29.41 3.17 0.00 2.74
1234 9855 0.465460 TTATGCCGGATTGCCAGACC 60.465 55.000 5.05 0.00 0.00 3.85
1320 9969 2.049156 CACTCGCACTTCTCCGCA 60.049 61.111 0.00 0.00 0.00 5.69
1322 9971 2.049156 TGCACTCGCACTTCTCCG 60.049 61.111 0.00 0.00 45.36 4.63
1421 14367 0.179097 CTTCACTAAGCTCCCTCCGC 60.179 60.000 0.00 0.00 0.00 5.54
1434 14380 1.120530 ACGTTGAGTCCACCTTCACT 58.879 50.000 0.00 0.00 0.00 3.41
1449 14395 1.227823 TGGCAGCAGCTTGTACGTT 60.228 52.632 0.00 0.00 41.70 3.99
1488 14434 0.329596 ACTCCTTGGCCTTGGTGATC 59.670 55.000 18.70 0.00 0.00 2.92
1628 14574 7.090319 ACCAAGCAATGTCATATTATAGGGA 57.910 36.000 0.00 0.00 0.00 4.20
1643 14589 4.281688 AGAAGCACACAAATACCAAGCAAT 59.718 37.500 0.00 0.00 0.00 3.56
1704 14650 1.062294 CTCGCTGTGTACGTCCTCTAC 59.938 57.143 0.00 0.00 0.00 2.59
1804 14750 9.459640 CAATTTCCTTTCAAGATACATATGCAG 57.540 33.333 1.58 0.00 0.00 4.41
1818 14764 7.201565 CGCCTTAAAACAAACAATTTCCTTTCA 60.202 33.333 0.00 0.00 0.00 2.69
1887 14833 4.393155 AATCGCACGGCTGCCTGA 62.393 61.111 17.92 9.49 40.73 3.86
1910 14856 0.388649 CATATCGGACGGGTGCTAGC 60.389 60.000 8.10 8.10 0.00 3.42
1912 14858 1.663739 GCATATCGGACGGGTGCTA 59.336 57.895 8.72 0.00 33.25 3.49
1947 14893 3.950397 TGCGTTGATGTAGGGAAAGAAT 58.050 40.909 0.00 0.00 0.00 2.40
1951 14897 3.134574 ACTTGCGTTGATGTAGGGAAA 57.865 42.857 0.00 0.00 0.00 3.13
1985 14931 1.002134 CTGGGGGCACAGTCGAATT 60.002 57.895 0.00 0.00 33.81 2.17
2031 14977 1.539869 AGGTGGGATGCAGAGGTGT 60.540 57.895 0.00 0.00 0.00 4.16
2510 15456 0.875908 CCCATGTGATGCTACGACGG 60.876 60.000 0.00 0.00 0.00 4.79
2535 15481 1.760875 TCGGGGGAGACATAGCACC 60.761 63.158 0.00 0.00 0.00 5.01
2536 15482 1.442148 GTCGGGGGAGACATAGCAC 59.558 63.158 0.00 0.00 40.65 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.