Multiple sequence alignment - TraesCS2D01G475600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G475600 chr2D 100.000 4070 0 0 1 4070 578001881 578005950 0.000000e+00 7516.0
1 TraesCS2D01G475600 chr2D 91.935 186 14 1 355 540 170848602 170848786 4.040000e-65 259.0
2 TraesCS2D01G475600 chr2D 90.323 124 12 0 3674 3797 563004126 563004003 3.260000e-36 163.0
3 TraesCS2D01G475600 chr2D 89.516 124 13 0 3674 3797 2582358 2582481 1.510000e-34 158.0
4 TraesCS2D01G475600 chr2D 89.516 124 13 0 3674 3797 2589088 2589211 1.510000e-34 158.0
5 TraesCS2D01G475600 chr2D 90.000 80 8 0 3494 3573 630676526 630676447 2.000000e-18 104.0
6 TraesCS2D01G475600 chr2D 89.024 82 7 1 3494 3575 626278233 626278312 2.590000e-17 100.0
7 TraesCS2D01G475600 chr2B 94.331 2734 107 23 550 3261 695449018 695451725 0.000000e+00 4146.0
8 TraesCS2D01G475600 chr2B 91.304 92 5 2 3587 3675 394089637 394089728 5.520000e-24 122.0
9 TraesCS2D01G475600 chr2B 92.683 82 6 0 3494 3575 530402417 530402336 7.150000e-23 119.0
10 TraesCS2D01G475600 chr2B 89.157 83 8 1 3494 3575 727692501 727692419 7.200000e-18 102.0
11 TraesCS2D01G475600 chr2B 86.813 91 8 3 3587 3675 441866174 441866086 9.310000e-17 99.0
12 TraesCS2D01G475600 chr2B 87.805 82 10 0 3494 3575 790230566 790230485 3.350000e-16 97.1
13 TraesCS2D01G475600 chr2B 94.444 36 2 0 321 356 695448974 695449009 5.680000e-04 56.5
14 TraesCS2D01G475600 chr2A 94.560 2647 92 22 619 3224 715986772 715989407 0.000000e+00 4043.0
15 TraesCS2D01G475600 chr2A 92.593 405 27 3 3663 4067 715994426 715994827 2.730000e-161 579.0
16 TraesCS2D01G475600 chr2A 89.091 330 20 11 3287 3612 715994111 715994428 2.950000e-106 396.0
17 TraesCS2D01G475600 chr2A 95.161 62 3 0 3388 3449 715994266 715994327 9.310000e-17 99.0
18 TraesCS2D01G475600 chr2A 87.059 85 8 2 3494 3577 69218469 69218387 4.330000e-15 93.5
19 TraesCS2D01G475600 chr2A 94.444 36 2 0 321 356 715986688 715986723 5.680000e-04 56.5
20 TraesCS2D01G475600 chrUn 82.653 686 107 5 2196 2879 23535297 23534622 7.530000e-167 597.0
21 TraesCS2D01G475600 chrUn 93.939 66 4 0 2135 2200 23536596 23536531 2.590000e-17 100.0
22 TraesCS2D01G475600 chrUn 86.170 94 6 6 3587 3675 35797343 35797434 1.200000e-15 95.3
23 TraesCS2D01G475600 chr5D 92.473 186 14 0 355 540 58874645 58874830 2.410000e-67 267.0
24 TraesCS2D01G475600 chr5D 83.571 140 18 4 3682 3819 431789742 431789606 4.270000e-25 126.0
25 TraesCS2D01G475600 chr5D 90.000 90 4 4 3587 3673 314438749 314438836 1.200000e-20 111.0
26 TraesCS2D01G475600 chr3D 92.513 187 13 1 355 540 533955510 533955696 2.410000e-67 267.0
27 TraesCS2D01G475600 chr3D 92.021 188 12 3 356 540 506177316 506177129 1.120000e-65 261.0
28 TraesCS2D01G475600 chr3D 91.129 124 10 1 3674 3797 15411535 15411413 2.520000e-37 167.0
29 TraesCS2D01G475600 chr1B 92.896 183 10 3 359 539 333623782 333623601 3.120000e-66 263.0
30 TraesCS2D01G475600 chr7D 91.935 186 15 0 355 540 352055953 352056138 1.120000e-65 261.0
31 TraesCS2D01G475600 chr5B 91.979 187 14 1 355 540 258191881 258192067 1.120000e-65 261.0
32 TraesCS2D01G475600 chr5B 82.051 156 21 6 3668 3819 522847002 522847154 4.270000e-25 126.0
33 TraesCS2D01G475600 chr5B 89.024 82 9 0 3494 3575 16460994 16460913 7.200000e-18 102.0
34 TraesCS2D01G475600 chr5B 86.813 91 6 5 3589 3675 271583771 271583683 3.350000e-16 97.1
35 TraesCS2D01G475600 chr4D 92.391 184 12 2 359 540 35722484 35722301 1.120000e-65 261.0
36 TraesCS2D01G475600 chr4D 83.505 97 14 2 3581 3675 12503396 12503492 5.600000e-14 89.8
37 TraesCS2D01G475600 chr1D 91.444 187 15 1 355 541 84405631 84405816 5.220000e-64 255.0
38 TraesCS2D01G475600 chr6D 92.742 124 9 0 3674 3797 69292767 69292644 3.230000e-41 180.0
39 TraesCS2D01G475600 chr5A 90.698 129 11 1 3674 3802 680105216 680105089 1.950000e-38 171.0
40 TraesCS2D01G475600 chr6B 91.129 124 11 0 3674 3797 513685282 513685159 7.000000e-38 169.0
41 TraesCS2D01G475600 chr6B 84.783 92 5 6 3582 3673 23635965 23635883 2.610000e-12 84.2
42 TraesCS2D01G475600 chr6A 89.062 128 14 0 3673 3800 479994812 479994685 4.210000e-35 159.0
43 TraesCS2D01G475600 chr3A 91.954 87 5 2 3494 3579 75571662 75571577 1.990000e-23 121.0
44 TraesCS2D01G475600 chr3A 88.172 93 5 5 3587 3675 519781062 519780972 5.560000e-19 106.0
45 TraesCS2D01G475600 chr3B 83.146 89 15 0 3587 3675 14051500 14051588 9.380000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G475600 chr2D 578001881 578005950 4069 False 7516.00 7516 100.000000 1 4070 1 chr2D.!!$F4 4069
1 TraesCS2D01G475600 chr2B 695448974 695451725 2751 False 2101.25 4146 94.387500 321 3261 2 chr2B.!!$F2 2940
2 TraesCS2D01G475600 chr2A 715986688 715989407 2719 False 2049.75 4043 94.502000 321 3224 2 chr2A.!!$F1 2903
3 TraesCS2D01G475600 chr2A 715994111 715994827 716 False 358.00 579 92.281667 3287 4067 3 chr2A.!!$F2 780
4 TraesCS2D01G475600 chrUn 23534622 23536596 1974 True 348.50 597 88.296000 2135 2879 2 chrUn.!!$R1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 578 0.191314 CCCCCACCCCCTTAACAAAA 59.809 55.0 0.0 0.0 0.00 2.44 F
776 785 0.746923 GCCCACCGTAACCAGATTCC 60.747 60.0 0.0 0.0 0.00 3.01 F
1755 1792 0.096628 CGTTCCTCGTCTACTGTCGG 59.903 60.0 0.0 0.0 34.52 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1792 0.580104 CGGTGTCAAACAAGACGACC 59.420 55.0 0.00 0.00 41.41 4.79 R
1854 1891 0.745845 GACTGATCGGGCATTGCAGT 60.746 55.0 11.39 3.83 42.03 4.40 R
3649 4938 0.098025 GTCGGCTCAGTCTCTCGAAG 59.902 60.0 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.664916 TCCGTCGTTACTTACTTGTGC 58.335 47.619 0.00 0.00 0.00 4.57
21 22 1.384409 CCGTCGTTACTTACTTGTGCG 59.616 52.381 0.00 0.00 0.00 5.34
22 23 2.046313 CGTCGTTACTTACTTGTGCGT 58.954 47.619 0.00 0.00 0.00 5.24
23 24 2.160195 CGTCGTTACTTACTTGTGCGTG 60.160 50.000 0.00 0.00 0.00 5.34
24 25 1.788308 TCGTTACTTACTTGTGCGTGC 59.212 47.619 0.00 0.00 0.00 5.34
25 26 1.136446 CGTTACTTACTTGTGCGTGCC 60.136 52.381 0.00 0.00 0.00 5.01
26 27 1.196127 GTTACTTACTTGTGCGTGCCC 59.804 52.381 0.00 0.00 0.00 5.36
27 28 0.668096 TACTTACTTGTGCGTGCCCG 60.668 55.000 0.00 0.00 37.07 6.13
41 42 3.105157 CCCGCGCATGCAAAACAC 61.105 61.111 19.57 0.00 42.97 3.32
42 43 3.105157 CCGCGCATGCAAAACACC 61.105 61.111 19.57 0.00 42.97 4.16
43 44 2.354422 CGCGCATGCAAAACACCA 60.354 55.556 19.57 0.00 42.97 4.17
44 45 2.647381 CGCGCATGCAAAACACCAC 61.647 57.895 19.57 0.00 42.97 4.16
45 46 2.647381 GCGCATGCAAAACACCACG 61.647 57.895 19.57 0.00 42.15 4.94
46 47 2.647381 CGCATGCAAAACACCACGC 61.647 57.895 19.57 0.00 0.00 5.34
47 48 2.647381 GCATGCAAAACACCACGCG 61.647 57.895 14.21 3.53 0.00 6.01
48 49 1.299014 CATGCAAAACACCACGCGT 60.299 52.632 5.58 5.58 0.00 6.01
49 50 0.869454 CATGCAAAACACCACGCGTT 60.869 50.000 10.22 0.00 0.00 4.84
50 51 0.593773 ATGCAAAACACCACGCGTTC 60.594 50.000 10.22 0.00 0.00 3.95
51 52 1.063488 GCAAAACACCACGCGTTCT 59.937 52.632 10.22 0.00 0.00 3.01
52 53 0.305313 GCAAAACACCACGCGTTCTA 59.695 50.000 10.22 0.00 0.00 2.10
53 54 1.069500 GCAAAACACCACGCGTTCTAT 60.069 47.619 10.22 0.00 0.00 1.98
54 55 2.834689 CAAAACACCACGCGTTCTATC 58.165 47.619 10.22 0.00 0.00 2.08
55 56 1.435577 AAACACCACGCGTTCTATCC 58.564 50.000 10.22 0.00 0.00 2.59
56 57 0.319083 AACACCACGCGTTCTATCCA 59.681 50.000 10.22 0.00 0.00 3.41
57 58 0.319083 ACACCACGCGTTCTATCCAA 59.681 50.000 10.22 0.00 0.00 3.53
58 59 1.066430 ACACCACGCGTTCTATCCAAT 60.066 47.619 10.22 0.00 0.00 3.16
59 60 1.593006 CACCACGCGTTCTATCCAATC 59.407 52.381 10.22 0.00 0.00 2.67
60 61 1.480954 ACCACGCGTTCTATCCAATCT 59.519 47.619 10.22 0.00 0.00 2.40
61 62 2.691526 ACCACGCGTTCTATCCAATCTA 59.308 45.455 10.22 0.00 0.00 1.98
62 63 3.050619 CCACGCGTTCTATCCAATCTAC 58.949 50.000 10.22 0.00 0.00 2.59
63 64 3.243434 CCACGCGTTCTATCCAATCTACT 60.243 47.826 10.22 0.00 0.00 2.57
64 65 4.023450 CCACGCGTTCTATCCAATCTACTA 60.023 45.833 10.22 0.00 0.00 1.82
65 66 5.335740 CCACGCGTTCTATCCAATCTACTAT 60.336 44.000 10.22 0.00 0.00 2.12
66 67 6.150318 CACGCGTTCTATCCAATCTACTATT 58.850 40.000 10.22 0.00 0.00 1.73
67 68 6.305877 CACGCGTTCTATCCAATCTACTATTC 59.694 42.308 10.22 0.00 0.00 1.75
68 69 6.207025 ACGCGTTCTATCCAATCTACTATTCT 59.793 38.462 5.58 0.00 0.00 2.40
69 70 7.389884 ACGCGTTCTATCCAATCTACTATTCTA 59.610 37.037 5.58 0.00 0.00 2.10
70 71 7.906010 CGCGTTCTATCCAATCTACTATTCTAG 59.094 40.741 0.00 0.00 0.00 2.43
71 72 8.948145 GCGTTCTATCCAATCTACTATTCTAGA 58.052 37.037 0.00 0.00 0.00 2.43
79 80 9.967346 TCCAATCTACTATTCTAGAAAATCGTG 57.033 33.333 9.71 1.26 0.00 4.35
80 81 9.197694 CCAATCTACTATTCTAGAAAATCGTGG 57.802 37.037 9.71 6.36 0.00 4.94
81 82 8.704234 CAATCTACTATTCTAGAAAATCGTGGC 58.296 37.037 9.71 0.00 0.00 5.01
82 83 7.584122 TCTACTATTCTAGAAAATCGTGGCT 57.416 36.000 9.71 0.00 0.00 4.75
83 84 8.687292 TCTACTATTCTAGAAAATCGTGGCTA 57.313 34.615 9.71 0.00 0.00 3.93
84 85 8.784994 TCTACTATTCTAGAAAATCGTGGCTAG 58.215 37.037 9.71 5.92 33.37 3.42
85 86 7.584122 ACTATTCTAGAAAATCGTGGCTAGA 57.416 36.000 9.71 0.00 37.99 2.43
86 87 8.184304 ACTATTCTAGAAAATCGTGGCTAGAT 57.816 34.615 9.71 0.00 39.10 1.98
87 88 8.301002 ACTATTCTAGAAAATCGTGGCTAGATC 58.699 37.037 9.71 0.00 39.10 2.75
88 89 6.716934 TTCTAGAAAATCGTGGCTAGATCT 57.283 37.500 1.68 0.00 39.10 2.75
89 90 6.320494 TCTAGAAAATCGTGGCTAGATCTC 57.680 41.667 0.00 0.00 35.64 2.75
90 91 5.828328 TCTAGAAAATCGTGGCTAGATCTCA 59.172 40.000 0.00 0.00 35.64 3.27
91 92 5.344743 AGAAAATCGTGGCTAGATCTCAA 57.655 39.130 0.00 0.00 0.00 3.02
92 93 5.923204 AGAAAATCGTGGCTAGATCTCAAT 58.077 37.500 0.00 0.00 0.00 2.57
93 94 5.988561 AGAAAATCGTGGCTAGATCTCAATC 59.011 40.000 0.00 0.00 0.00 2.67
94 95 4.944619 AATCGTGGCTAGATCTCAATCA 57.055 40.909 0.00 0.00 34.07 2.57
95 96 4.944619 ATCGTGGCTAGATCTCAATCAA 57.055 40.909 0.00 0.00 34.07 2.57
96 97 4.046938 TCGTGGCTAGATCTCAATCAAC 57.953 45.455 0.00 0.00 34.07 3.18
97 98 3.447229 TCGTGGCTAGATCTCAATCAACA 59.553 43.478 0.00 0.00 34.07 3.33
98 99 4.100035 TCGTGGCTAGATCTCAATCAACAT 59.900 41.667 0.00 0.00 34.07 2.71
99 100 4.813161 CGTGGCTAGATCTCAATCAACATT 59.187 41.667 0.00 0.00 34.07 2.71
100 101 5.295292 CGTGGCTAGATCTCAATCAACATTT 59.705 40.000 0.00 0.00 34.07 2.32
101 102 6.183360 CGTGGCTAGATCTCAATCAACATTTT 60.183 38.462 0.00 0.00 34.07 1.82
102 103 7.192232 GTGGCTAGATCTCAATCAACATTTTC 58.808 38.462 0.00 0.00 34.07 2.29
103 104 6.885918 TGGCTAGATCTCAATCAACATTTTCA 59.114 34.615 0.00 0.00 34.07 2.69
104 105 7.066645 TGGCTAGATCTCAATCAACATTTTCAG 59.933 37.037 0.00 0.00 34.07 3.02
105 106 7.066766 GGCTAGATCTCAATCAACATTTTCAGT 59.933 37.037 0.00 0.00 34.07 3.41
106 107 8.457261 GCTAGATCTCAATCAACATTTTCAGTT 58.543 33.333 0.00 0.00 34.07 3.16
111 112 9.903682 ATCTCAATCAACATTTTCAGTTAAGTG 57.096 29.630 3.73 3.73 0.00 3.16
112 113 9.119418 TCTCAATCAACATTTTCAGTTAAGTGA 57.881 29.630 8.98 8.98 0.00 3.41
113 114 9.903682 CTCAATCAACATTTTCAGTTAAGTGAT 57.096 29.630 13.69 0.00 0.00 3.06
174 175 8.749026 AATACATGATTCTTCAAGCAAGATCT 57.251 30.769 0.00 0.00 41.02 2.75
175 176 6.680874 ACATGATTCTTCAAGCAAGATCTC 57.319 37.500 0.00 0.00 41.02 2.75
176 177 6.178324 ACATGATTCTTCAAGCAAGATCTCA 58.822 36.000 0.00 0.00 41.02 3.27
177 178 6.829298 ACATGATTCTTCAAGCAAGATCTCAT 59.171 34.615 0.00 0.00 41.02 2.90
178 179 6.679327 TGATTCTTCAAGCAAGATCTCATG 57.321 37.500 0.00 0.00 41.02 3.07
179 180 6.412214 TGATTCTTCAAGCAAGATCTCATGA 58.588 36.000 0.00 0.00 41.02 3.07
180 181 6.882678 TGATTCTTCAAGCAAGATCTCATGAA 59.117 34.615 0.00 4.21 41.02 2.57
181 182 7.556635 TGATTCTTCAAGCAAGATCTCATGAAT 59.443 33.333 0.00 0.00 41.02 2.57
182 183 8.975663 ATTCTTCAAGCAAGATCTCATGAATA 57.024 30.769 0.00 0.00 41.02 1.75
183 184 8.975663 TTCTTCAAGCAAGATCTCATGAATAT 57.024 30.769 0.00 0.00 41.02 1.28
184 185 8.975663 TCTTCAAGCAAGATCTCATGAATATT 57.024 30.769 0.00 0.00 36.08 1.28
185 186 8.837389 TCTTCAAGCAAGATCTCATGAATATTG 58.163 33.333 15.16 15.16 36.08 1.90
186 187 6.967135 TCAAGCAAGATCTCATGAATATTGC 58.033 36.000 25.82 25.82 38.29 3.56
187 188 6.544564 TCAAGCAAGATCTCATGAATATTGCA 59.455 34.615 29.95 18.54 39.38 4.08
188 189 7.230712 TCAAGCAAGATCTCATGAATATTGCAT 59.769 33.333 29.95 23.26 39.38 3.96
189 190 8.512138 CAAGCAAGATCTCATGAATATTGCATA 58.488 33.333 29.95 0.00 39.38 3.14
190 191 8.270080 AGCAAGATCTCATGAATATTGCATAG 57.730 34.615 29.95 8.29 39.38 2.23
191 192 8.101419 AGCAAGATCTCATGAATATTGCATAGA 58.899 33.333 29.95 12.18 39.38 1.98
192 193 8.176365 GCAAGATCTCATGAATATTGCATAGAC 58.824 37.037 26.97 10.73 38.11 2.59
193 194 9.438228 CAAGATCTCATGAATATTGCATAGACT 57.562 33.333 0.00 0.00 0.00 3.24
194 195 9.438228 AAGATCTCATGAATATTGCATAGACTG 57.562 33.333 0.00 0.00 0.00 3.51
195 196 8.813951 AGATCTCATGAATATTGCATAGACTGA 58.186 33.333 0.00 0.00 0.00 3.41
196 197 9.089601 GATCTCATGAATATTGCATAGACTGAG 57.910 37.037 0.00 1.89 0.00 3.35
197 198 8.186709 TCTCATGAATATTGCATAGACTGAGA 57.813 34.615 0.00 3.98 0.00 3.27
198 199 8.087136 TCTCATGAATATTGCATAGACTGAGAC 58.913 37.037 0.00 0.00 0.00 3.36
199 200 7.960262 TCATGAATATTGCATAGACTGAGACT 58.040 34.615 0.00 0.00 0.00 3.24
200 201 9.082313 TCATGAATATTGCATAGACTGAGACTA 57.918 33.333 0.00 0.00 0.00 2.59
201 202 9.702494 CATGAATATTGCATAGACTGAGACTAA 57.298 33.333 0.00 0.00 0.00 2.24
203 204 9.920133 TGAATATTGCATAGACTGAGACTAATC 57.080 33.333 0.00 0.00 0.00 1.75
222 223 8.950208 ACTAATCTTAGTCTACCAAGATTTGC 57.050 34.615 17.58 0.00 44.98 3.68
223 224 8.540388 ACTAATCTTAGTCTACCAAGATTTGCA 58.460 33.333 17.58 4.24 44.98 4.08
224 225 9.383519 CTAATCTTAGTCTACCAAGATTTGCAA 57.616 33.333 17.58 0.00 44.98 4.08
225 226 8.814038 AATCTTAGTCTACCAAGATTTGCAAT 57.186 30.769 9.74 0.00 44.98 3.56
226 227 7.849804 TCTTAGTCTACCAAGATTTGCAATC 57.150 36.000 0.00 0.09 33.30 2.67
227 228 6.823689 TCTTAGTCTACCAAGATTTGCAATCC 59.176 38.462 0.00 0.00 33.30 3.01
228 229 5.184892 AGTCTACCAAGATTTGCAATCCT 57.815 39.130 0.00 0.00 33.30 3.24
229 230 4.946157 AGTCTACCAAGATTTGCAATCCTG 59.054 41.667 0.00 0.55 33.30 3.86
230 231 4.943705 GTCTACCAAGATTTGCAATCCTGA 59.056 41.667 0.00 0.00 33.30 3.86
231 232 5.415701 GTCTACCAAGATTTGCAATCCTGAA 59.584 40.000 0.00 0.00 33.30 3.02
232 233 6.009589 TCTACCAAGATTTGCAATCCTGAAA 58.990 36.000 0.00 0.00 0.00 2.69
233 234 5.750352 ACCAAGATTTGCAATCCTGAAAT 57.250 34.783 0.00 0.00 0.00 2.17
234 235 5.484715 ACCAAGATTTGCAATCCTGAAATG 58.515 37.500 0.00 0.00 0.00 2.32
235 236 4.331717 CCAAGATTTGCAATCCTGAAATGC 59.668 41.667 0.00 0.00 40.45 3.56
236 237 5.175859 CAAGATTTGCAATCCTGAAATGCT 58.824 37.500 0.00 0.00 40.66 3.79
237 238 5.416271 AGATTTGCAATCCTGAAATGCTT 57.584 34.783 0.00 0.00 40.66 3.91
238 239 6.534475 AGATTTGCAATCCTGAAATGCTTA 57.466 33.333 0.00 0.00 40.66 3.09
239 240 6.938507 AGATTTGCAATCCTGAAATGCTTAA 58.061 32.000 0.00 5.13 40.66 1.85
240 241 6.815142 AGATTTGCAATCCTGAAATGCTTAAC 59.185 34.615 0.00 0.00 40.66 2.01
241 242 4.095410 TGCAATCCTGAAATGCTTAACG 57.905 40.909 8.96 0.00 40.66 3.18
242 243 3.755905 TGCAATCCTGAAATGCTTAACGA 59.244 39.130 0.00 0.00 40.66 3.85
243 244 4.398988 TGCAATCCTGAAATGCTTAACGAT 59.601 37.500 0.00 0.00 40.66 3.73
244 245 4.972440 GCAATCCTGAAATGCTTAACGATC 59.028 41.667 0.00 0.00 37.12 3.69
245 246 5.449041 GCAATCCTGAAATGCTTAACGATCA 60.449 40.000 0.00 0.00 37.12 2.92
246 247 5.998454 ATCCTGAAATGCTTAACGATCAG 57.002 39.130 0.00 0.00 35.28 2.90
247 248 3.623060 TCCTGAAATGCTTAACGATCAGC 59.377 43.478 0.00 0.00 34.42 4.26
248 249 3.624861 CCTGAAATGCTTAACGATCAGCT 59.375 43.478 0.44 0.00 36.92 4.24
249 250 4.495349 CCTGAAATGCTTAACGATCAGCTG 60.495 45.833 7.63 7.63 36.92 4.24
250 251 3.181507 TGAAATGCTTAACGATCAGCTGC 60.182 43.478 9.47 0.00 36.92 5.25
251 252 2.028420 ATGCTTAACGATCAGCTGCA 57.972 45.000 9.47 0.00 36.92 4.41
252 253 1.078709 TGCTTAACGATCAGCTGCAC 58.921 50.000 9.47 4.32 36.92 4.57
253 254 1.338105 TGCTTAACGATCAGCTGCACT 60.338 47.619 9.47 0.00 36.92 4.40
254 255 1.325943 GCTTAACGATCAGCTGCACTC 59.674 52.381 9.47 4.79 32.87 3.51
255 256 2.886081 CTTAACGATCAGCTGCACTCT 58.114 47.619 9.47 0.00 0.00 3.24
256 257 2.568696 TAACGATCAGCTGCACTCTC 57.431 50.000 9.47 0.00 0.00 3.20
257 258 0.894141 AACGATCAGCTGCACTCTCT 59.106 50.000 9.47 0.00 0.00 3.10
258 259 0.894141 ACGATCAGCTGCACTCTCTT 59.106 50.000 9.47 0.00 0.00 2.85
259 260 1.135141 ACGATCAGCTGCACTCTCTTC 60.135 52.381 9.47 0.00 0.00 2.87
260 261 1.134753 CGATCAGCTGCACTCTCTTCT 59.865 52.381 9.47 0.00 0.00 2.85
261 262 2.357323 CGATCAGCTGCACTCTCTTCTA 59.643 50.000 9.47 0.00 0.00 2.10
262 263 3.705604 GATCAGCTGCACTCTCTTCTAC 58.294 50.000 9.47 0.00 0.00 2.59
263 264 2.801483 TCAGCTGCACTCTCTTCTACT 58.199 47.619 9.47 0.00 0.00 2.57
264 265 3.161067 TCAGCTGCACTCTCTTCTACTT 58.839 45.455 9.47 0.00 0.00 2.24
265 266 3.192422 TCAGCTGCACTCTCTTCTACTTC 59.808 47.826 9.47 0.00 0.00 3.01
266 267 3.193267 CAGCTGCACTCTCTTCTACTTCT 59.807 47.826 0.00 0.00 0.00 2.85
267 268 3.443681 AGCTGCACTCTCTTCTACTTCTC 59.556 47.826 1.02 0.00 0.00 2.87
268 269 3.428862 GCTGCACTCTCTTCTACTTCTCC 60.429 52.174 0.00 0.00 0.00 3.71
269 270 2.750166 TGCACTCTCTTCTACTTCTCCG 59.250 50.000 0.00 0.00 0.00 4.63
270 271 2.478879 GCACTCTCTTCTACTTCTCCGC 60.479 54.545 0.00 0.00 0.00 5.54
271 272 2.750166 CACTCTCTTCTACTTCTCCGCA 59.250 50.000 0.00 0.00 0.00 5.69
272 273 3.191581 CACTCTCTTCTACTTCTCCGCAA 59.808 47.826 0.00 0.00 0.00 4.85
273 274 3.827302 ACTCTCTTCTACTTCTCCGCAAA 59.173 43.478 0.00 0.00 0.00 3.68
274 275 4.281182 ACTCTCTTCTACTTCTCCGCAAAA 59.719 41.667 0.00 0.00 0.00 2.44
275 276 5.209818 TCTCTTCTACTTCTCCGCAAAAA 57.790 39.130 0.00 0.00 0.00 1.94
295 296 5.784750 AAAAGAAACAAAAAGCTGCACTC 57.215 34.783 1.02 0.00 0.00 3.51
296 297 4.725790 AAGAAACAAAAAGCTGCACTCT 57.274 36.364 1.02 0.00 0.00 3.24
297 298 4.725790 AGAAACAAAAAGCTGCACTCTT 57.274 36.364 1.02 0.00 0.00 2.85
298 299 4.676546 AGAAACAAAAAGCTGCACTCTTC 58.323 39.130 1.02 0.00 0.00 2.87
299 300 4.400567 AGAAACAAAAAGCTGCACTCTTCT 59.599 37.500 1.02 0.00 0.00 2.85
300 301 3.705043 ACAAAAAGCTGCACTCTTCTG 57.295 42.857 1.02 0.00 0.00 3.02
301 302 2.223665 ACAAAAAGCTGCACTCTTCTGC 60.224 45.455 1.02 0.00 37.70 4.26
302 303 1.978454 AAAAGCTGCACTCTTCTGCT 58.022 45.000 1.02 0.00 39.83 4.24
303 304 1.521580 AAAGCTGCACTCTTCTGCTC 58.478 50.000 1.02 0.00 37.68 4.26
304 305 0.686224 AAGCTGCACTCTTCTGCTCT 59.314 50.000 1.02 0.00 37.68 4.09
305 306 0.686224 AGCTGCACTCTTCTGCTCTT 59.314 50.000 1.02 0.00 38.07 2.85
306 307 1.072015 AGCTGCACTCTTCTGCTCTTT 59.928 47.619 1.02 0.00 38.07 2.52
307 308 1.878734 GCTGCACTCTTCTGCTCTTTT 59.121 47.619 0.00 0.00 38.07 2.27
308 309 2.350580 GCTGCACTCTTCTGCTCTTTTG 60.351 50.000 0.00 0.00 38.07 2.44
309 310 1.605710 TGCACTCTTCTGCTCTTTTGC 59.394 47.619 0.00 0.00 38.07 3.68
310 311 1.605710 GCACTCTTCTGCTCTTTTGCA 59.394 47.619 0.00 0.00 41.05 4.08
318 319 0.956633 TGCTCTTTTGCAGCTTCTGG 59.043 50.000 0.00 0.00 38.12 3.86
319 320 0.243095 GCTCTTTTGCAGCTTCTGGG 59.757 55.000 0.00 0.00 33.75 4.45
322 323 0.243095 CTTTTGCAGCTTCTGGGCTC 59.757 55.000 0.00 0.00 41.00 4.70
356 357 4.214119 CCGAGTCGATTTCCATATTGCAAT 59.786 41.667 17.56 17.56 0.00 3.56
357 358 5.408299 CCGAGTCGATTTCCATATTGCAATA 59.592 40.000 20.95 20.95 0.00 1.90
359 360 7.176075 CGAGTCGATTTCCATATTGCAATATC 58.824 38.462 25.71 16.00 29.35 1.63
360 361 7.148590 CGAGTCGATTTCCATATTGCAATATCA 60.149 37.037 25.71 14.46 29.35 2.15
361 362 8.037382 AGTCGATTTCCATATTGCAATATCAG 57.963 34.615 25.71 20.00 29.35 2.90
362 363 7.663081 AGTCGATTTCCATATTGCAATATCAGT 59.337 33.333 25.71 11.81 29.35 3.41
363 364 8.292448 GTCGATTTCCATATTGCAATATCAGTT 58.708 33.333 25.71 12.04 29.35 3.16
364 365 8.849168 TCGATTTCCATATTGCAATATCAGTTT 58.151 29.630 25.71 12.95 29.35 2.66
365 366 8.908678 CGATTTCCATATTGCAATATCAGTTTG 58.091 33.333 25.71 16.31 29.35 2.93
366 367 9.754382 GATTTCCATATTGCAATATCAGTTTGT 57.246 29.630 25.71 11.13 29.35 2.83
367 368 9.754382 ATTTCCATATTGCAATATCAGTTTGTC 57.246 29.630 25.71 0.00 29.35 3.18
368 369 8.523915 TTCCATATTGCAATATCAGTTTGTCT 57.476 30.769 25.71 2.81 29.35 3.41
369 370 9.625747 TTCCATATTGCAATATCAGTTTGTCTA 57.374 29.630 25.71 0.69 29.35 2.59
370 371 9.625747 TCCATATTGCAATATCAGTTTGTCTAA 57.374 29.630 25.71 0.25 29.35 2.10
375 376 6.486248 TGCAATATCAGTTTGTCTAATTCGC 58.514 36.000 0.00 0.00 0.00 4.70
376 377 6.093357 TGCAATATCAGTTTGTCTAATTCGCA 59.907 34.615 0.00 0.00 0.00 5.10
377 378 7.134815 GCAATATCAGTTTGTCTAATTCGCAT 58.865 34.615 0.00 0.00 0.00 4.73
378 379 7.322222 GCAATATCAGTTTGTCTAATTCGCATC 59.678 37.037 0.00 0.00 0.00 3.91
379 380 8.554528 CAATATCAGTTTGTCTAATTCGCATCT 58.445 33.333 0.00 0.00 0.00 2.90
380 381 9.764363 AATATCAGTTTGTCTAATTCGCATCTA 57.236 29.630 0.00 0.00 0.00 1.98
381 382 7.706281 ATCAGTTTGTCTAATTCGCATCTAG 57.294 36.000 0.00 0.00 0.00 2.43
382 383 6.863275 TCAGTTTGTCTAATTCGCATCTAGA 58.137 36.000 0.00 0.00 0.00 2.43
383 384 7.492524 TCAGTTTGTCTAATTCGCATCTAGAT 58.507 34.615 0.00 0.00 0.00 1.98
384 385 7.436376 TCAGTTTGTCTAATTCGCATCTAGATG 59.564 37.037 25.64 25.64 41.60 2.90
385 386 7.223582 CAGTTTGTCTAATTCGCATCTAGATGT 59.776 37.037 28.92 14.60 40.80 3.06
386 387 7.766278 AGTTTGTCTAATTCGCATCTAGATGTT 59.234 33.333 28.92 19.18 40.80 2.71
387 388 8.391106 GTTTGTCTAATTCGCATCTAGATGTTT 58.609 33.333 28.92 19.98 40.80 2.83
388 389 8.492673 TTGTCTAATTCGCATCTAGATGTTTT 57.507 30.769 28.92 19.70 40.80 2.43
389 390 8.492673 TGTCTAATTCGCATCTAGATGTTTTT 57.507 30.769 28.92 19.97 40.80 1.94
414 415 9.567776 TTTAAAGATGTCACATCTAAACTTCCA 57.432 29.630 20.94 1.19 0.00 3.53
415 416 9.739276 TTAAAGATGTCACATCTAAACTTCCAT 57.261 29.630 20.94 0.00 0.00 3.41
417 418 9.739276 AAAGATGTCACATCTAAACTTCCATAA 57.261 29.630 20.94 0.00 0.00 1.90
418 419 9.739276 AAGATGTCACATCTAAACTTCCATAAA 57.261 29.630 20.94 0.00 0.00 1.40
419 420 9.911788 AGATGTCACATCTAAACTTCCATAAAT 57.088 29.630 19.29 0.00 0.00 1.40
481 482 7.639113 AAAAATAGACCACAAACAGAGTTGA 57.361 32.000 0.00 0.00 32.59 3.18
482 483 6.619801 AAATAGACCACAAACAGAGTTGAC 57.380 37.500 0.00 0.00 32.59 3.18
483 484 3.627395 AGACCACAAACAGAGTTGACA 57.373 42.857 0.00 0.00 32.59 3.58
484 485 4.156455 AGACCACAAACAGAGTTGACAT 57.844 40.909 0.00 0.00 32.59 3.06
485 486 4.130118 AGACCACAAACAGAGTTGACATC 58.870 43.478 0.00 0.00 32.59 3.06
486 487 3.876914 GACCACAAACAGAGTTGACATCA 59.123 43.478 0.00 0.00 32.59 3.07
487 488 4.269183 ACCACAAACAGAGTTGACATCAA 58.731 39.130 0.00 0.00 32.59 2.57
488 489 4.889409 ACCACAAACAGAGTTGACATCAAT 59.111 37.500 0.00 0.00 38.24 2.57
489 490 5.360714 ACCACAAACAGAGTTGACATCAATT 59.639 36.000 0.00 0.00 38.24 2.32
490 491 6.127366 ACCACAAACAGAGTTGACATCAATTT 60.127 34.615 0.00 0.00 38.24 1.82
491 492 7.068103 ACCACAAACAGAGTTGACATCAATTTA 59.932 33.333 0.00 0.00 38.24 1.40
492 493 7.592533 CCACAAACAGAGTTGACATCAATTTAG 59.407 37.037 0.00 0.00 38.24 1.85
493 494 8.344831 CACAAACAGAGTTGACATCAATTTAGA 58.655 33.333 0.00 0.00 38.24 2.10
494 495 9.071276 ACAAACAGAGTTGACATCAATTTAGAT 57.929 29.630 0.00 0.00 38.24 1.98
536 537 5.916661 TCTAGATGTGTCCTAGACAAACC 57.083 43.478 0.00 0.00 44.49 3.27
537 538 3.983044 AGATGTGTCCTAGACAAACCC 57.017 47.619 0.00 0.00 44.49 4.11
538 539 3.521727 AGATGTGTCCTAGACAAACCCT 58.478 45.455 0.00 0.00 44.49 4.34
539 540 3.910627 AGATGTGTCCTAGACAAACCCTT 59.089 43.478 0.00 0.00 44.49 3.95
540 541 3.764237 TGTGTCCTAGACAAACCCTTC 57.236 47.619 0.00 0.00 44.49 3.46
541 542 2.370849 TGTGTCCTAGACAAACCCTTCC 59.629 50.000 0.00 0.00 44.49 3.46
542 543 2.370849 GTGTCCTAGACAAACCCTTCCA 59.629 50.000 0.00 0.00 44.49 3.53
543 544 3.050089 TGTCCTAGACAAACCCTTCCAA 58.950 45.455 0.00 0.00 39.78 3.53
544 545 3.072476 TGTCCTAGACAAACCCTTCCAAG 59.928 47.826 0.00 0.00 39.78 3.61
545 546 2.642807 TCCTAGACAAACCCTTCCAAGG 59.357 50.000 0.00 0.00 46.06 3.61
576 577 1.862162 CCCCCACCCCCTTAACAAA 59.138 57.895 0.00 0.00 0.00 2.83
577 578 0.191314 CCCCCACCCCCTTAACAAAA 59.809 55.000 0.00 0.00 0.00 2.44
579 580 2.044630 CCCCCACCCCCTTAACAAAATA 59.955 50.000 0.00 0.00 0.00 1.40
581 582 3.516300 CCCCACCCCCTTAACAAAATAAC 59.484 47.826 0.00 0.00 0.00 1.89
586 587 7.227873 CCACCCCCTTAACAAAATAACAATTT 58.772 34.615 0.00 0.00 0.00 1.82
587 588 7.721842 CCACCCCCTTAACAAAATAACAATTTT 59.278 33.333 0.00 0.00 34.37 1.82
610 611 4.404394 TGTATCTGCTCGATTCCCAACTAA 59.596 41.667 0.00 0.00 33.48 2.24
612 613 4.060038 TCTGCTCGATTCCCAACTAATC 57.940 45.455 0.00 0.00 0.00 1.75
651 652 7.337689 AGCAAATCTTGTTATCTGAAGCACATA 59.662 33.333 0.00 0.00 0.00 2.29
669 671 5.105146 GCACATAAACCAACCCCATGATTTA 60.105 40.000 0.00 0.00 0.00 1.40
723 728 5.105877 GCACTATGCAATCATGATATTGGCT 60.106 40.000 9.04 4.33 44.26 4.75
776 785 0.746923 GCCCACCGTAACCAGATTCC 60.747 60.000 0.00 0.00 0.00 3.01
852 866 1.498865 CGTCCACGCTTGCTTGAACT 61.499 55.000 0.54 0.00 0.00 3.01
892 906 6.569994 CGTCCCTATAAATAGTTCTTCCTCCG 60.570 46.154 0.00 0.00 0.00 4.63
966 986 1.873591 AGATTTTGTGTCTGGTGCGTC 59.126 47.619 0.00 0.00 0.00 5.19
991 1011 1.078490 TCCCTCCAAATCCAATTGCCA 59.922 47.619 0.00 0.00 0.00 4.92
1281 1318 2.126307 CTGTCCGAGCTCCACGTG 60.126 66.667 9.08 9.08 0.00 4.49
1297 1334 1.676635 GTGGCCATGCAGAAGCTCA 60.677 57.895 9.72 0.00 42.74 4.26
1356 1393 1.965930 GTGGGTGCTCATGAACGCA 60.966 57.895 11.96 11.96 41.64 5.24
1755 1792 0.096628 CGTTCCTCGTCTACTGTCGG 59.903 60.000 0.00 0.00 34.52 4.79
1780 1817 3.491639 CGTCTTGTTTGACACCGTTGATA 59.508 43.478 0.00 0.00 36.82 2.15
1788 1825 3.659786 TGACACCGTTGATACCAAGAAG 58.340 45.455 0.00 0.00 32.06 2.85
2172 2209 1.887707 CGCCGTGGCCTTCCTTATC 60.888 63.158 3.32 0.00 37.98 1.75
2375 3651 4.116328 CCTCTCGAAGCACGCGGA 62.116 66.667 12.47 0.00 42.26 5.54
2520 3796 0.757188 AGTACTGCCAGGAGATCGGG 60.757 60.000 0.00 0.00 0.00 5.14
3074 4353 5.936372 ACCGTGTCATTCGAGTATAGCTATA 59.064 40.000 9.47 9.47 0.00 1.31
3075 4354 6.598457 ACCGTGTCATTCGAGTATAGCTATAT 59.402 38.462 16.35 6.13 0.00 0.86
3158 4439 3.927163 TTTCGGCGGCGAGTTCTCC 62.927 63.158 32.72 0.00 0.00 3.71
3251 4536 6.872920 AGAGAGTGCCTATGTAAAAAGAGAG 58.127 40.000 0.00 0.00 0.00 3.20
3261 4546 6.715347 ATGTAAAAAGAGAGTGCCAAACTT 57.285 33.333 0.00 0.00 40.07 2.66
3262 4547 6.524101 TGTAAAAAGAGAGTGCCAAACTTT 57.476 33.333 0.00 0.00 40.07 2.66
3263 4548 6.560711 TGTAAAAAGAGAGTGCCAAACTTTC 58.439 36.000 0.00 0.00 40.07 2.62
3264 4549 3.971032 AAAGAGAGTGCCAAACTTTCG 57.029 42.857 0.00 0.00 43.29 3.46
3265 4550 1.230324 AGAGAGTGCCAAACTTTCGC 58.770 50.000 0.00 0.00 43.29 4.70
3266 4551 0.238553 GAGAGTGCCAAACTTTCGCC 59.761 55.000 0.00 0.00 40.07 5.54
3267 4552 1.172812 AGAGTGCCAAACTTTCGCCC 61.173 55.000 0.00 0.00 40.07 6.13
3268 4553 2.142357 GAGTGCCAAACTTTCGCCCC 62.142 60.000 0.00 0.00 40.07 5.80
3269 4554 2.123683 TGCCAAACTTTCGCCCCA 60.124 55.556 0.00 0.00 0.00 4.96
3270 4555 2.338620 GCCAAACTTTCGCCCCAC 59.661 61.111 0.00 0.00 0.00 4.61
3271 4556 2.200337 GCCAAACTTTCGCCCCACT 61.200 57.895 0.00 0.00 0.00 4.00
3272 4557 1.744320 GCCAAACTTTCGCCCCACTT 61.744 55.000 0.00 0.00 0.00 3.16
3273 4558 0.750249 CCAAACTTTCGCCCCACTTT 59.250 50.000 0.00 0.00 0.00 2.66
3274 4559 1.957877 CCAAACTTTCGCCCCACTTTA 59.042 47.619 0.00 0.00 0.00 1.85
3275 4560 2.560981 CCAAACTTTCGCCCCACTTTAT 59.439 45.455 0.00 0.00 0.00 1.40
3276 4561 3.759618 CCAAACTTTCGCCCCACTTTATA 59.240 43.478 0.00 0.00 0.00 0.98
3277 4562 4.218852 CCAAACTTTCGCCCCACTTTATAA 59.781 41.667 0.00 0.00 0.00 0.98
3278 4563 5.279056 CCAAACTTTCGCCCCACTTTATAAA 60.279 40.000 0.00 0.00 0.00 1.40
3279 4564 6.394809 CAAACTTTCGCCCCACTTTATAAAT 58.605 36.000 0.00 0.00 0.00 1.40
3280 4565 7.363094 CCAAACTTTCGCCCCACTTTATAAATA 60.363 37.037 0.00 0.00 0.00 1.40
3281 4566 7.891498 AACTTTCGCCCCACTTTATAAATAT 57.109 32.000 0.00 0.00 0.00 1.28
3282 4567 8.983702 AACTTTCGCCCCACTTTATAAATATA 57.016 30.769 0.00 0.00 0.00 0.86
3283 4568 8.983702 ACTTTCGCCCCACTTTATAAATATAA 57.016 30.769 0.00 0.00 0.00 0.98
3284 4569 8.843262 ACTTTCGCCCCACTTTATAAATATAAC 58.157 33.333 0.00 0.00 0.00 1.89
3285 4570 7.424227 TTCGCCCCACTTTATAAATATAACG 57.576 36.000 0.00 0.21 0.00 3.18
3312 4597 3.674423 GATGAATGAAACTGCTACGTGC 58.326 45.455 0.00 0.00 43.25 5.34
3333 4620 3.884895 CATCATACCTGTGCCCAAACTA 58.115 45.455 0.00 0.00 0.00 2.24
3334 4621 4.464008 CATCATACCTGTGCCCAAACTAT 58.536 43.478 0.00 0.00 0.00 2.12
3336 4623 2.122783 TACCTGTGCCCAAACTATGC 57.877 50.000 0.00 0.00 0.00 3.14
3337 4624 0.112218 ACCTGTGCCCAAACTATGCA 59.888 50.000 0.00 0.00 0.00 3.96
3338 4625 0.813184 CCTGTGCCCAAACTATGCAG 59.187 55.000 0.00 0.00 35.33 4.41
3339 4626 1.538047 CTGTGCCCAAACTATGCAGT 58.462 50.000 0.00 0.00 35.33 4.40
3345 4632 3.016736 GCCCAAACTATGCAGTACATGT 58.983 45.455 2.69 2.69 40.06 3.21
3348 4635 5.124776 GCCCAAACTATGCAGTACATGTAAA 59.875 40.000 7.25 0.00 40.06 2.01
3367 4654 1.680522 ATCCAGCGGCTCGTGATCTT 61.681 55.000 0.00 0.00 0.00 2.40
3369 4656 1.424493 CCAGCGGCTCGTGATCTTTC 61.424 60.000 0.00 0.00 0.00 2.62
3398 4685 2.159014 ACGCATGTCCGGCTAGATTTAA 60.159 45.455 0.00 0.00 0.00 1.52
3531 4820 3.194861 ACGCAAACGCTCATACATACAT 58.805 40.909 0.00 0.00 45.53 2.29
3532 4821 3.001228 ACGCAAACGCTCATACATACATG 59.999 43.478 0.00 0.00 45.53 3.21
3534 4823 3.242706 GCAAACGCTCATACATACATGCA 60.243 43.478 0.00 0.00 0.00 3.96
3561 4850 2.892215 TCACCACAATGAATGCACACAT 59.108 40.909 0.00 0.00 38.49 3.21
3609 4898 4.941325 TTTTAACACAGTACACACGCAA 57.059 36.364 0.00 0.00 0.00 4.85
3611 4900 0.655733 AACACAGTACACACGCAAGC 59.344 50.000 0.00 0.00 45.62 4.01
3612 4901 1.201578 CACAGTACACACGCAAGCG 59.798 57.895 13.50 13.50 46.03 4.68
3613 4902 2.170985 CAGTACACACGCAAGCGC 59.829 61.111 15.09 0.00 44.19 5.92
3614 4903 2.029073 AGTACACACGCAAGCGCT 59.971 55.556 15.09 2.64 44.19 5.92
3615 4904 2.022129 AGTACACACGCAAGCGCTC 61.022 57.895 12.06 0.00 44.19 5.03
3616 4905 2.028337 TACACACGCAAGCGCTCA 59.972 55.556 12.06 0.00 44.19 4.26
3617 4906 1.374125 TACACACGCAAGCGCTCAT 60.374 52.632 12.06 0.00 44.19 2.90
3618 4907 0.109039 TACACACGCAAGCGCTCATA 60.109 50.000 12.06 0.00 44.19 2.15
3619 4908 1.059369 CACACGCAAGCGCTCATAC 59.941 57.895 12.06 0.00 44.19 2.39
3620 4909 1.374125 ACACGCAAGCGCTCATACA 60.374 52.632 12.06 0.00 44.19 2.29
3621 4910 0.740868 ACACGCAAGCGCTCATACAT 60.741 50.000 12.06 0.00 44.19 2.29
3622 4911 1.208259 CACGCAAGCGCTCATACATA 58.792 50.000 12.06 0.00 44.19 2.29
3623 4912 1.071239 CACGCAAGCGCTCATACATAC 60.071 52.381 12.06 0.00 44.19 2.39
3624 4913 1.208259 CGCAAGCGCTCATACATACA 58.792 50.000 12.06 0.00 35.30 2.29
3625 4914 1.794701 CGCAAGCGCTCATACATACAT 59.205 47.619 12.06 0.00 35.30 2.29
3626 4915 2.410646 CGCAAGCGCTCATACATACATG 60.411 50.000 12.06 1.45 35.30 3.21
3627 4916 2.663879 GCAAGCGCTCATACATACATGC 60.664 50.000 12.06 9.27 34.30 4.06
3628 4917 2.531522 AGCGCTCATACATACATGCA 57.468 45.000 2.64 0.00 0.00 3.96
3629 4918 2.138320 AGCGCTCATACATACATGCAC 58.862 47.619 2.64 0.00 0.00 4.57
3630 4919 1.866601 GCGCTCATACATACATGCACA 59.133 47.619 0.00 0.00 0.00 4.57
3631 4920 2.481568 GCGCTCATACATACATGCACAT 59.518 45.455 0.00 0.00 0.00 3.21
3632 4921 3.424039 GCGCTCATACATACATGCACATC 60.424 47.826 0.00 0.00 0.00 3.06
3633 4922 3.124128 CGCTCATACATACATGCACATCC 59.876 47.826 0.00 0.00 0.00 3.51
3634 4923 4.321718 GCTCATACATACATGCACATCCT 58.678 43.478 0.00 0.00 0.00 3.24
3635 4924 5.482006 GCTCATACATACATGCACATCCTA 58.518 41.667 0.00 0.00 0.00 2.94
3636 4925 5.349817 GCTCATACATACATGCACATCCTAC 59.650 44.000 0.00 0.00 0.00 3.18
3637 4926 5.793817 TCATACATACATGCACATCCTACC 58.206 41.667 0.00 0.00 0.00 3.18
3638 4927 3.492102 ACATACATGCACATCCTACCC 57.508 47.619 0.00 0.00 0.00 3.69
3639 4928 2.106511 ACATACATGCACATCCTACCCC 59.893 50.000 0.00 0.00 0.00 4.95
3640 4929 2.190398 TACATGCACATCCTACCCCT 57.810 50.000 0.00 0.00 0.00 4.79
3641 4930 2.190398 ACATGCACATCCTACCCCTA 57.810 50.000 0.00 0.00 0.00 3.53
3642 4931 2.706350 ACATGCACATCCTACCCCTAT 58.294 47.619 0.00 0.00 0.00 2.57
3643 4932 2.373169 ACATGCACATCCTACCCCTATG 59.627 50.000 0.00 0.00 0.00 2.23
3644 4933 2.487746 TGCACATCCTACCCCTATGA 57.512 50.000 0.00 0.00 0.00 2.15
3645 4934 2.329267 TGCACATCCTACCCCTATGAG 58.671 52.381 0.00 0.00 0.00 2.90
3646 4935 1.002544 GCACATCCTACCCCTATGAGC 59.997 57.143 0.00 0.00 31.75 4.26
3647 4936 2.329267 CACATCCTACCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
3648 4937 2.037772 CACATCCTACCCCTATGAGCAC 59.962 54.545 0.00 0.00 0.00 4.40
3649 4938 1.625818 CATCCTACCCCTATGAGCACC 59.374 57.143 0.00 0.00 0.00 5.01
3650 4939 0.941963 TCCTACCCCTATGAGCACCT 59.058 55.000 0.00 0.00 0.00 4.00
3651 4940 1.294068 TCCTACCCCTATGAGCACCTT 59.706 52.381 0.00 0.00 0.00 3.50
3652 4941 1.694696 CCTACCCCTATGAGCACCTTC 59.305 57.143 0.00 0.00 0.00 3.46
3653 4942 1.341531 CTACCCCTATGAGCACCTTCG 59.658 57.143 0.00 0.00 0.00 3.79
3654 4943 0.325296 ACCCCTATGAGCACCTTCGA 60.325 55.000 0.00 0.00 0.00 3.71
3655 4944 0.390860 CCCCTATGAGCACCTTCGAG 59.609 60.000 0.00 0.00 0.00 4.04
3656 4945 1.403814 CCCTATGAGCACCTTCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
3657 4946 1.339610 CCCTATGAGCACCTTCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3658 4947 2.302260 CCTATGAGCACCTTCGAGAGA 58.698 52.381 0.00 0.00 39.20 3.10
3659 4948 2.034053 CCTATGAGCACCTTCGAGAGAC 59.966 54.545 0.00 0.00 41.84 3.36
3660 4949 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
3661 4950 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
3677 4966 3.815962 GAGACTGAGCCGACATATCACTA 59.184 47.826 0.00 0.00 0.00 2.74
3700 4989 2.277583 CGCATCGCCGGAAATTTTG 58.722 52.632 5.05 0.00 0.00 2.44
3728 5017 6.635030 AAATTTAGGAATAATGCGAGGACC 57.365 37.500 0.00 0.00 0.00 4.46
3748 5037 1.142870 CAGGACTTGAACCTTGGTGGA 59.857 52.381 0.00 0.00 39.71 4.02
3751 5040 2.222027 GACTTGAACCTTGGTGGACTG 58.778 52.381 0.00 0.00 39.71 3.51
3752 5041 1.133792 ACTTGAACCTTGGTGGACTGG 60.134 52.381 0.00 0.00 39.71 4.00
3753 5042 1.142870 CTTGAACCTTGGTGGACTGGA 59.857 52.381 0.00 0.00 39.71 3.86
3781 5070 3.200825 CACTGTCCCTCTAACCATCCAAT 59.799 47.826 0.00 0.00 0.00 3.16
3784 5073 3.199946 TGTCCCTCTAACCATCCAATCAC 59.800 47.826 0.00 0.00 0.00 3.06
3787 5076 3.434167 CCCTCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
3812 5101 5.944013 TGGTTCGCGAATTTAATCATTTGA 58.056 33.333 26.23 0.00 0.00 2.69
3815 5104 7.219917 TGGTTCGCGAATTTAATCATTTGAATC 59.780 33.333 26.23 5.22 0.00 2.52
3817 5106 8.582930 GTTCGCGAATTTAATCATTTGAATCAA 58.417 29.630 26.23 0.00 0.00 2.57
3850 5139 4.758674 GGTGAAGAAACCCTACTACAAACC 59.241 45.833 0.00 0.00 33.79 3.27
3906 5195 6.379386 TCCATTAACTCGAAGCATATACTCG 58.621 40.000 0.00 0.00 0.00 4.18
3944 5233 2.838202 ACAAGAATCACCCGATACCACT 59.162 45.455 0.00 0.00 0.00 4.00
3969 5258 2.348666 CAGGAACAAATAAGCGTCTCCG 59.651 50.000 0.00 0.00 37.07 4.63
3970 5259 1.664151 GGAACAAATAAGCGTCTCCGG 59.336 52.381 0.00 0.00 33.68 5.14
3971 5260 1.664151 GAACAAATAAGCGTCTCCGGG 59.336 52.381 0.00 0.00 33.68 5.73
4003 5292 0.040425 AACGCCAATGCTTCGAACAC 60.040 50.000 0.00 0.00 34.43 3.32
4028 5317 2.907897 GATGTTGCCGAGGAGGGTCG 62.908 65.000 0.00 0.00 41.48 4.79
4067 5356 1.134848 GGCCATAGAGCATCGATCCTC 60.135 57.143 8.38 8.38 42.67 3.71
4068 5357 1.824230 GCCATAGAGCATCGATCCTCT 59.176 52.381 22.07 22.07 42.67 3.69
4069 5358 2.233431 GCCATAGAGCATCGATCCTCTT 59.767 50.000 23.46 9.29 42.67 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.664916 GCACAAGTAAGTAACGACGGA 58.335 47.619 0.00 0.00 0.00 4.69
1 2 1.384409 CGCACAAGTAAGTAACGACGG 59.616 52.381 0.00 0.00 0.00 4.79
2 3 2.046313 ACGCACAAGTAAGTAACGACG 58.954 47.619 0.00 0.00 0.00 5.12
3 4 2.409371 GCACGCACAAGTAAGTAACGAC 60.409 50.000 0.00 0.00 0.00 4.34
4 5 1.788308 GCACGCACAAGTAAGTAACGA 59.212 47.619 0.00 0.00 0.00 3.85
5 6 1.136446 GGCACGCACAAGTAAGTAACG 60.136 52.381 0.00 0.00 0.00 3.18
6 7 1.196127 GGGCACGCACAAGTAAGTAAC 59.804 52.381 0.00 0.00 0.00 2.50
7 8 1.515081 GGGCACGCACAAGTAAGTAA 58.485 50.000 0.00 0.00 0.00 2.24
8 9 0.668096 CGGGCACGCACAAGTAAGTA 60.668 55.000 0.00 0.00 0.00 2.24
9 10 1.959226 CGGGCACGCACAAGTAAGT 60.959 57.895 0.00 0.00 0.00 2.24
10 11 2.860293 CGGGCACGCACAAGTAAG 59.140 61.111 0.00 0.00 0.00 2.34
24 25 3.105157 GTGTTTTGCATGCGCGGG 61.105 61.111 14.09 0.00 42.97 6.13
25 26 3.105157 GGTGTTTTGCATGCGCGG 61.105 61.111 14.09 0.00 42.97 6.46
26 27 2.354422 TGGTGTTTTGCATGCGCG 60.354 55.556 14.09 0.00 42.97 6.86
27 28 2.647381 CGTGGTGTTTTGCATGCGC 61.647 57.895 14.09 0.00 39.24 6.09
28 29 2.647381 GCGTGGTGTTTTGCATGCG 61.647 57.895 14.09 0.00 0.00 4.73
29 30 2.647381 CGCGTGGTGTTTTGCATGC 61.647 57.895 11.82 11.82 0.00 4.06
30 31 0.869454 AACGCGTGGTGTTTTGCATG 60.869 50.000 14.98 0.00 31.91 4.06
31 32 0.593773 GAACGCGTGGTGTTTTGCAT 60.594 50.000 14.98 0.00 36.34 3.96
32 33 1.226435 GAACGCGTGGTGTTTTGCA 60.226 52.632 14.98 0.00 36.34 4.08
33 34 0.305313 TAGAACGCGTGGTGTTTTGC 59.695 50.000 14.98 0.00 36.34 3.68
34 35 2.412325 GGATAGAACGCGTGGTGTTTTG 60.412 50.000 14.98 0.00 36.34 2.44
35 36 1.802365 GGATAGAACGCGTGGTGTTTT 59.198 47.619 14.98 0.00 36.34 2.43
36 37 1.270412 TGGATAGAACGCGTGGTGTTT 60.270 47.619 14.98 0.00 36.34 2.83
37 38 0.319083 TGGATAGAACGCGTGGTGTT 59.681 50.000 14.98 0.00 39.06 3.32
38 39 0.319083 TTGGATAGAACGCGTGGTGT 59.681 50.000 14.98 0.11 0.00 4.16
39 40 1.593006 GATTGGATAGAACGCGTGGTG 59.407 52.381 14.98 0.00 0.00 4.17
40 41 1.480954 AGATTGGATAGAACGCGTGGT 59.519 47.619 14.98 5.52 0.00 4.16
41 42 2.225068 AGATTGGATAGAACGCGTGG 57.775 50.000 14.98 0.00 0.00 4.94
42 43 3.966154 AGTAGATTGGATAGAACGCGTG 58.034 45.455 14.98 0.00 0.00 5.34
43 44 5.961396 ATAGTAGATTGGATAGAACGCGT 57.039 39.130 5.58 5.58 0.00 6.01
44 45 6.613233 AGAATAGTAGATTGGATAGAACGCG 58.387 40.000 3.53 3.53 0.00 6.01
45 46 8.948145 TCTAGAATAGTAGATTGGATAGAACGC 58.052 37.037 0.00 0.00 40.38 4.84
53 54 9.967346 CACGATTTTCTAGAATAGTAGATTGGA 57.033 33.333 5.89 0.00 40.38 3.53
54 55 9.197694 CCACGATTTTCTAGAATAGTAGATTGG 57.802 37.037 5.89 2.79 40.38 3.16
55 56 8.704234 GCCACGATTTTCTAGAATAGTAGATTG 58.296 37.037 5.89 1.72 40.38 2.67
56 57 8.643324 AGCCACGATTTTCTAGAATAGTAGATT 58.357 33.333 5.89 0.00 40.38 2.40
57 58 8.184304 AGCCACGATTTTCTAGAATAGTAGAT 57.816 34.615 5.89 0.00 40.38 1.98
58 59 7.584122 AGCCACGATTTTCTAGAATAGTAGA 57.416 36.000 5.89 0.00 40.38 2.59
59 60 8.784994 TCTAGCCACGATTTTCTAGAATAGTAG 58.215 37.037 5.89 0.46 40.38 2.57
60 61 8.687292 TCTAGCCACGATTTTCTAGAATAGTA 57.313 34.615 5.89 0.00 40.38 1.82
61 62 7.584122 TCTAGCCACGATTTTCTAGAATAGT 57.416 36.000 5.89 1.77 40.38 2.12
62 63 8.519526 AGATCTAGCCACGATTTTCTAGAATAG 58.480 37.037 5.89 2.14 40.33 1.73
63 64 8.410673 AGATCTAGCCACGATTTTCTAGAATA 57.589 34.615 5.89 1.52 40.33 1.75
64 65 7.014711 TGAGATCTAGCCACGATTTTCTAGAAT 59.985 37.037 5.89 0.00 40.33 2.40
65 66 6.321435 TGAGATCTAGCCACGATTTTCTAGAA 59.679 38.462 0.00 0.00 40.33 2.10
66 67 5.828328 TGAGATCTAGCCACGATTTTCTAGA 59.172 40.000 0.00 0.00 40.94 2.43
67 68 6.078202 TGAGATCTAGCCACGATTTTCTAG 57.922 41.667 0.00 0.00 0.00 2.43
68 69 6.465439 TTGAGATCTAGCCACGATTTTCTA 57.535 37.500 0.00 0.00 0.00 2.10
69 70 5.344743 TTGAGATCTAGCCACGATTTTCT 57.655 39.130 0.00 0.00 0.00 2.52
70 71 5.755375 TGATTGAGATCTAGCCACGATTTTC 59.245 40.000 0.00 0.00 33.28 2.29
71 72 5.674525 TGATTGAGATCTAGCCACGATTTT 58.325 37.500 0.00 0.00 33.28 1.82
72 73 5.282055 TGATTGAGATCTAGCCACGATTT 57.718 39.130 0.00 0.00 33.28 2.17
73 74 4.944619 TGATTGAGATCTAGCCACGATT 57.055 40.909 0.00 0.00 33.28 3.34
74 75 4.100035 TGTTGATTGAGATCTAGCCACGAT 59.900 41.667 0.00 0.00 33.28 3.73
75 76 3.447229 TGTTGATTGAGATCTAGCCACGA 59.553 43.478 0.00 0.00 33.28 4.35
76 77 3.785486 TGTTGATTGAGATCTAGCCACG 58.215 45.455 0.00 0.00 33.28 4.94
77 78 6.690194 AAATGTTGATTGAGATCTAGCCAC 57.310 37.500 0.00 0.00 33.28 5.01
78 79 6.885918 TGAAAATGTTGATTGAGATCTAGCCA 59.114 34.615 0.00 0.00 33.28 4.75
79 80 7.066766 ACTGAAAATGTTGATTGAGATCTAGCC 59.933 37.037 0.00 0.00 33.28 3.93
80 81 7.983307 ACTGAAAATGTTGATTGAGATCTAGC 58.017 34.615 0.00 0.00 33.28 3.42
85 86 9.903682 CACTTAACTGAAAATGTTGATTGAGAT 57.096 29.630 0.00 0.00 0.00 2.75
86 87 9.119418 TCACTTAACTGAAAATGTTGATTGAGA 57.881 29.630 0.00 0.00 0.00 3.27
87 88 9.903682 ATCACTTAACTGAAAATGTTGATTGAG 57.096 29.630 0.00 0.00 30.67 3.02
148 149 9.842775 AGATCTTGCTTGAAGAATCATGTATTA 57.157 29.630 0.00 0.00 44.11 0.98
149 150 8.749026 AGATCTTGCTTGAAGAATCATGTATT 57.251 30.769 0.00 0.00 44.11 1.89
150 151 7.991460 TGAGATCTTGCTTGAAGAATCATGTAT 59.009 33.333 0.00 0.00 44.11 2.29
151 152 7.333323 TGAGATCTTGCTTGAAGAATCATGTA 58.667 34.615 0.00 0.00 44.11 2.29
152 153 6.178324 TGAGATCTTGCTTGAAGAATCATGT 58.822 36.000 0.00 0.00 44.11 3.21
153 154 6.679327 TGAGATCTTGCTTGAAGAATCATG 57.321 37.500 0.00 0.00 44.11 3.07
154 155 7.054751 TCATGAGATCTTGCTTGAAGAATCAT 58.945 34.615 0.00 0.00 44.40 2.45
155 156 6.412214 TCATGAGATCTTGCTTGAAGAATCA 58.588 36.000 0.00 0.00 44.11 2.57
156 157 6.922247 TCATGAGATCTTGCTTGAAGAATC 57.078 37.500 0.00 0.00 44.11 2.52
157 158 7.883391 ATTCATGAGATCTTGCTTGAAGAAT 57.117 32.000 14.26 6.91 44.11 2.40
158 159 8.975663 ATATTCATGAGATCTTGCTTGAAGAA 57.024 30.769 14.26 8.43 44.11 2.52
159 160 8.837389 CAATATTCATGAGATCTTGCTTGAAGA 58.163 33.333 14.26 11.58 45.03 2.87
160 161 7.591795 GCAATATTCATGAGATCTTGCTTGAAG 59.408 37.037 20.71 0.00 33.53 3.02
161 162 7.067737 TGCAATATTCATGAGATCTTGCTTGAA 59.932 33.333 24.22 12.36 35.52 2.69
162 163 6.544564 TGCAATATTCATGAGATCTTGCTTGA 59.455 34.615 24.22 13.10 35.52 3.02
163 164 6.735130 TGCAATATTCATGAGATCTTGCTTG 58.265 36.000 24.22 12.79 35.52 4.01
164 165 6.954487 TGCAATATTCATGAGATCTTGCTT 57.046 33.333 24.22 4.33 35.52 3.91
165 166 8.101419 TCTATGCAATATTCATGAGATCTTGCT 58.899 33.333 24.22 17.81 35.52 3.91
166 167 8.176365 GTCTATGCAATATTCATGAGATCTTGC 58.824 37.037 20.94 20.94 35.28 4.01
167 168 9.438228 AGTCTATGCAATATTCATGAGATCTTG 57.562 33.333 0.00 4.09 0.00 3.02
168 169 9.438228 CAGTCTATGCAATATTCATGAGATCTT 57.562 33.333 0.00 0.00 0.00 2.40
169 170 8.813951 TCAGTCTATGCAATATTCATGAGATCT 58.186 33.333 0.00 0.00 0.00 2.75
170 171 8.999220 TCAGTCTATGCAATATTCATGAGATC 57.001 34.615 0.00 0.00 0.00 2.75
171 172 8.813951 TCTCAGTCTATGCAATATTCATGAGAT 58.186 33.333 11.16 0.00 0.00 2.75
172 173 8.087136 GTCTCAGTCTATGCAATATTCATGAGA 58.913 37.037 11.16 11.16 0.00 3.27
173 174 8.089597 AGTCTCAGTCTATGCAATATTCATGAG 58.910 37.037 0.00 0.00 0.00 2.90
174 175 7.960262 AGTCTCAGTCTATGCAATATTCATGA 58.040 34.615 0.00 0.00 0.00 3.07
175 176 9.702494 TTAGTCTCAGTCTATGCAATATTCATG 57.298 33.333 0.00 0.00 0.00 3.07
177 178 9.920133 GATTAGTCTCAGTCTATGCAATATTCA 57.080 33.333 0.00 0.00 0.00 2.57
182 183 9.142014 ACTAAGATTAGTCTCAGTCTATGCAAT 57.858 33.333 0.00 0.00 39.72 3.56
183 184 8.526667 ACTAAGATTAGTCTCAGTCTATGCAA 57.473 34.615 0.00 0.00 39.72 4.08
202 203 6.823689 GGATTGCAAATCTTGGTAGACTAAGA 59.176 38.462 1.71 10.44 45.36 2.10
203 204 6.825721 AGGATTGCAAATCTTGGTAGACTAAG 59.174 38.462 1.71 0.00 36.00 2.18
204 205 6.599244 CAGGATTGCAAATCTTGGTAGACTAA 59.401 38.462 1.71 0.00 31.99 2.24
205 206 6.070251 TCAGGATTGCAAATCTTGGTAGACTA 60.070 38.462 1.71 0.00 31.99 2.59
206 207 4.946157 CAGGATTGCAAATCTTGGTAGACT 59.054 41.667 1.71 0.00 31.99 3.24
207 208 4.943705 TCAGGATTGCAAATCTTGGTAGAC 59.056 41.667 1.71 0.00 31.99 2.59
208 209 5.178096 TCAGGATTGCAAATCTTGGTAGA 57.822 39.130 1.71 0.00 34.21 2.59
209 210 5.902613 TTCAGGATTGCAAATCTTGGTAG 57.097 39.130 1.71 0.00 0.00 3.18
210 211 6.632909 CATTTCAGGATTGCAAATCTTGGTA 58.367 36.000 1.71 1.85 0.00 3.25
211 212 5.484715 CATTTCAGGATTGCAAATCTTGGT 58.515 37.500 1.71 0.00 0.00 3.67
212 213 4.331717 GCATTTCAGGATTGCAAATCTTGG 59.668 41.667 1.71 0.00 35.29 3.61
213 214 5.175859 AGCATTTCAGGATTGCAAATCTTG 58.824 37.500 1.71 8.73 37.15 3.02
214 215 5.416271 AGCATTTCAGGATTGCAAATCTT 57.584 34.783 1.71 0.00 37.15 2.40
215 216 5.416271 AAGCATTTCAGGATTGCAAATCT 57.584 34.783 1.71 0.54 37.15 2.40
216 217 6.237648 CGTTAAGCATTTCAGGATTGCAAATC 60.238 38.462 1.71 1.63 37.15 2.17
217 218 5.577945 CGTTAAGCATTTCAGGATTGCAAAT 59.422 36.000 1.71 0.00 37.15 2.32
218 219 4.922692 CGTTAAGCATTTCAGGATTGCAAA 59.077 37.500 1.71 0.00 37.15 3.68
219 220 4.217334 TCGTTAAGCATTTCAGGATTGCAA 59.783 37.500 0.00 0.00 37.15 4.08
220 221 3.755905 TCGTTAAGCATTTCAGGATTGCA 59.244 39.130 0.00 0.00 37.15 4.08
221 222 4.355543 TCGTTAAGCATTTCAGGATTGC 57.644 40.909 0.00 0.00 35.40 3.56
222 223 6.122850 TGATCGTTAAGCATTTCAGGATTG 57.877 37.500 0.00 0.00 0.00 2.67
223 224 5.220931 GCTGATCGTTAAGCATTTCAGGATT 60.221 40.000 0.00 0.00 39.31 3.01
224 225 4.274459 GCTGATCGTTAAGCATTTCAGGAT 59.726 41.667 0.00 0.00 39.31 3.24
225 226 3.623060 GCTGATCGTTAAGCATTTCAGGA 59.377 43.478 0.00 0.00 39.31 3.86
226 227 3.624861 AGCTGATCGTTAAGCATTTCAGG 59.375 43.478 5.63 0.00 42.06 3.86
227 228 4.585364 CAGCTGATCGTTAAGCATTTCAG 58.415 43.478 8.42 0.00 42.06 3.02
228 229 3.181507 GCAGCTGATCGTTAAGCATTTCA 60.182 43.478 20.43 0.00 42.06 2.69
229 230 3.181507 TGCAGCTGATCGTTAAGCATTTC 60.182 43.478 20.43 0.00 42.06 2.17
230 231 2.749076 TGCAGCTGATCGTTAAGCATTT 59.251 40.909 20.43 0.00 42.06 2.32
231 232 2.096496 GTGCAGCTGATCGTTAAGCATT 59.904 45.455 20.43 0.00 42.06 3.56
232 233 1.667724 GTGCAGCTGATCGTTAAGCAT 59.332 47.619 20.43 0.00 42.06 3.79
233 234 1.078709 GTGCAGCTGATCGTTAAGCA 58.921 50.000 20.43 0.81 42.06 3.91
234 235 1.325943 GAGTGCAGCTGATCGTTAAGC 59.674 52.381 20.43 0.00 39.82 3.09
235 236 2.857152 GAGAGTGCAGCTGATCGTTAAG 59.143 50.000 20.43 0.00 0.00 1.85
236 237 2.493675 AGAGAGTGCAGCTGATCGTTAA 59.506 45.455 20.43 0.00 0.00 2.01
237 238 2.095461 AGAGAGTGCAGCTGATCGTTA 58.905 47.619 20.43 0.00 0.00 3.18
238 239 0.894141 AGAGAGTGCAGCTGATCGTT 59.106 50.000 20.43 0.00 0.00 3.85
239 240 0.894141 AAGAGAGTGCAGCTGATCGT 59.106 50.000 20.43 2.05 0.00 3.73
240 241 1.134753 AGAAGAGAGTGCAGCTGATCG 59.865 52.381 20.43 0.00 0.00 3.69
241 242 2.965572 AGAAGAGAGTGCAGCTGATC 57.034 50.000 20.43 11.84 0.00 2.92
242 243 3.364549 AGTAGAAGAGAGTGCAGCTGAT 58.635 45.455 20.43 1.27 0.00 2.90
243 244 2.801483 AGTAGAAGAGAGTGCAGCTGA 58.199 47.619 20.43 0.00 0.00 4.26
244 245 3.193267 AGAAGTAGAAGAGAGTGCAGCTG 59.807 47.826 10.11 10.11 0.00 4.24
245 246 3.430453 AGAAGTAGAAGAGAGTGCAGCT 58.570 45.455 0.00 0.00 0.00 4.24
246 247 3.428862 GGAGAAGTAGAAGAGAGTGCAGC 60.429 52.174 0.00 0.00 0.00 5.25
247 248 3.181501 CGGAGAAGTAGAAGAGAGTGCAG 60.182 52.174 0.00 0.00 0.00 4.41
248 249 2.750166 CGGAGAAGTAGAAGAGAGTGCA 59.250 50.000 0.00 0.00 0.00 4.57
249 250 2.478879 GCGGAGAAGTAGAAGAGAGTGC 60.479 54.545 0.00 0.00 0.00 4.40
250 251 2.750166 TGCGGAGAAGTAGAAGAGAGTG 59.250 50.000 0.00 0.00 0.00 3.51
251 252 3.074675 TGCGGAGAAGTAGAAGAGAGT 57.925 47.619 0.00 0.00 0.00 3.24
252 253 4.442375 TTTGCGGAGAAGTAGAAGAGAG 57.558 45.455 0.00 0.00 0.00 3.20
253 254 4.866508 TTTTGCGGAGAAGTAGAAGAGA 57.133 40.909 0.00 0.00 0.00 3.10
272 273 5.934043 AGAGTGCAGCTTTTTGTTTCTTTTT 59.066 32.000 0.00 0.00 0.00 1.94
273 274 5.482006 AGAGTGCAGCTTTTTGTTTCTTTT 58.518 33.333 0.00 0.00 0.00 2.27
274 275 5.077134 AGAGTGCAGCTTTTTGTTTCTTT 57.923 34.783 0.00 0.00 0.00 2.52
275 276 4.725790 AGAGTGCAGCTTTTTGTTTCTT 57.274 36.364 0.00 0.00 0.00 2.52
276 277 4.400567 AGAAGAGTGCAGCTTTTTGTTTCT 59.599 37.500 3.50 0.00 0.00 2.52
277 278 4.501921 CAGAAGAGTGCAGCTTTTTGTTTC 59.498 41.667 3.50 0.00 0.00 2.78
278 279 4.427312 CAGAAGAGTGCAGCTTTTTGTTT 58.573 39.130 3.50 0.00 0.00 2.83
279 280 3.736126 GCAGAAGAGTGCAGCTTTTTGTT 60.736 43.478 3.50 0.00 43.41 2.83
280 281 2.223665 GCAGAAGAGTGCAGCTTTTTGT 60.224 45.455 3.50 0.00 43.41 2.83
281 282 2.034305 AGCAGAAGAGTGCAGCTTTTTG 59.966 45.455 3.50 6.72 46.60 2.44
282 283 2.292845 GAGCAGAAGAGTGCAGCTTTTT 59.707 45.455 3.50 0.00 46.60 1.94
283 284 1.878734 GAGCAGAAGAGTGCAGCTTTT 59.121 47.619 3.50 0.00 46.60 2.27
284 285 1.072015 AGAGCAGAAGAGTGCAGCTTT 59.928 47.619 3.50 0.00 46.60 3.51
285 286 0.686224 AGAGCAGAAGAGTGCAGCTT 59.314 50.000 1.59 1.59 46.60 3.74
286 287 0.686224 AAGAGCAGAAGAGTGCAGCT 59.314 50.000 0.00 0.00 46.60 4.24
287 288 1.521580 AAAGAGCAGAAGAGTGCAGC 58.478 50.000 0.00 0.00 46.60 5.25
288 289 2.350580 GCAAAAGAGCAGAAGAGTGCAG 60.351 50.000 0.00 0.00 46.60 4.41
289 290 1.605710 GCAAAAGAGCAGAAGAGTGCA 59.394 47.619 0.00 0.00 46.60 4.57
290 291 1.605710 TGCAAAAGAGCAGAAGAGTGC 59.394 47.619 0.00 0.00 44.35 4.40
299 300 0.956633 CCAGAAGCTGCAAAAGAGCA 59.043 50.000 1.02 0.00 43.35 4.26
300 301 0.243095 CCCAGAAGCTGCAAAAGAGC 59.757 55.000 1.02 0.00 36.65 4.09
301 302 0.243095 GCCCAGAAGCTGCAAAAGAG 59.757 55.000 1.02 0.00 0.00 2.85
302 303 0.178981 AGCCCAGAAGCTGCAAAAGA 60.179 50.000 1.02 0.00 42.95 2.52
303 304 0.243095 GAGCCCAGAAGCTGCAAAAG 59.757 55.000 1.02 0.00 45.15 2.27
304 305 2.344535 GAGCCCAGAAGCTGCAAAA 58.655 52.632 1.02 0.00 45.15 2.44
305 306 4.085876 GAGCCCAGAAGCTGCAAA 57.914 55.556 1.02 0.00 45.15 3.68
309 310 1.142748 CGTAGGAGCCCAGAAGCTG 59.857 63.158 0.00 0.00 45.15 4.24
311 312 1.153549 CACGTAGGAGCCCAGAAGC 60.154 63.158 0.00 0.00 0.00 3.86
312 313 0.970937 TCCACGTAGGAGCCCAGAAG 60.971 60.000 3.02 0.00 43.07 2.85
313 314 1.077805 TCCACGTAGGAGCCCAGAA 59.922 57.895 3.02 0.00 43.07 3.02
314 315 2.768045 TCCACGTAGGAGCCCAGA 59.232 61.111 3.02 0.00 43.07 3.86
322 323 2.799371 GACTCGGCTCCACGTAGG 59.201 66.667 0.00 0.00 39.47 3.18
356 357 8.630037 TCTAGATGCGAATTAGACAAACTGATA 58.370 33.333 0.00 0.00 0.00 2.15
357 358 7.492524 TCTAGATGCGAATTAGACAAACTGAT 58.507 34.615 0.00 0.00 0.00 2.90
359 360 7.223582 ACATCTAGATGCGAATTAGACAAACTG 59.776 37.037 28.86 4.40 42.39 3.16
360 361 7.268586 ACATCTAGATGCGAATTAGACAAACT 58.731 34.615 28.86 4.32 42.39 2.66
361 362 7.470289 ACATCTAGATGCGAATTAGACAAAC 57.530 36.000 28.86 0.00 42.39 2.93
362 363 8.492673 AAACATCTAGATGCGAATTAGACAAA 57.507 30.769 28.86 0.00 42.39 2.83
363 364 8.492673 AAAACATCTAGATGCGAATTAGACAA 57.507 30.769 28.86 0.00 42.39 3.18
364 365 8.492673 AAAAACATCTAGATGCGAATTAGACA 57.507 30.769 28.86 0.00 42.39 3.41
388 389 9.567776 TGGAAGTTTAGATGTGACATCTTTAAA 57.432 29.630 30.49 22.34 0.00 1.52
389 390 9.739276 ATGGAAGTTTAGATGTGACATCTTTAA 57.261 29.630 30.49 21.53 0.00 1.52
391 392 9.739276 TTATGGAAGTTTAGATGTGACATCTTT 57.261 29.630 30.49 19.45 0.00 2.52
392 393 9.739276 TTTATGGAAGTTTAGATGTGACATCTT 57.261 29.630 30.49 14.32 0.00 2.40
393 394 9.911788 ATTTATGGAAGTTTAGATGTGACATCT 57.088 29.630 28.69 28.69 0.00 2.90
457 458 7.122055 TGTCAACTCTGTTTGTGGTCTATTTTT 59.878 33.333 0.00 0.00 0.00 1.94
458 459 6.601613 TGTCAACTCTGTTTGTGGTCTATTTT 59.398 34.615 0.00 0.00 0.00 1.82
459 460 6.119536 TGTCAACTCTGTTTGTGGTCTATTT 58.880 36.000 0.00 0.00 0.00 1.40
460 461 5.680619 TGTCAACTCTGTTTGTGGTCTATT 58.319 37.500 0.00 0.00 0.00 1.73
461 462 5.290493 TGTCAACTCTGTTTGTGGTCTAT 57.710 39.130 0.00 0.00 0.00 1.98
462 463 4.746535 TGTCAACTCTGTTTGTGGTCTA 57.253 40.909 0.00 0.00 0.00 2.59
463 464 3.627395 TGTCAACTCTGTTTGTGGTCT 57.373 42.857 0.00 0.00 0.00 3.85
464 465 3.876914 TGATGTCAACTCTGTTTGTGGTC 59.123 43.478 0.00 0.00 0.00 4.02
465 466 3.884895 TGATGTCAACTCTGTTTGTGGT 58.115 40.909 0.00 0.00 0.00 4.16
466 467 4.898829 TTGATGTCAACTCTGTTTGTGG 57.101 40.909 0.00 0.00 0.00 4.17
467 468 8.344831 TCTAAATTGATGTCAACTCTGTTTGTG 58.655 33.333 0.00 0.00 38.86 3.33
468 469 8.450578 TCTAAATTGATGTCAACTCTGTTTGT 57.549 30.769 0.00 0.00 38.86 2.83
469 470 9.338291 CATCTAAATTGATGTCAACTCTGTTTG 57.662 33.333 0.00 0.00 38.86 2.93
512 513 6.276847 GGTTTGTCTAGGACACATCTAGATG 58.723 44.000 27.63 27.63 42.60 2.90
513 514 5.364157 GGGTTTGTCTAGGACACATCTAGAT 59.636 44.000 0.00 0.00 42.60 1.98
514 515 4.710375 GGGTTTGTCTAGGACACATCTAGA 59.290 45.833 0.00 0.00 42.60 2.43
515 516 4.712337 AGGGTTTGTCTAGGACACATCTAG 59.288 45.833 0.00 0.00 42.60 2.43
516 517 4.684724 AGGGTTTGTCTAGGACACATCTA 58.315 43.478 0.00 0.00 42.60 1.98
517 518 3.521727 AGGGTTTGTCTAGGACACATCT 58.478 45.455 0.00 0.00 42.60 2.90
518 519 3.983044 AGGGTTTGTCTAGGACACATC 57.017 47.619 0.00 0.00 42.60 3.06
519 520 3.009143 GGAAGGGTTTGTCTAGGACACAT 59.991 47.826 0.00 0.00 42.60 3.21
520 521 2.370849 GGAAGGGTTTGTCTAGGACACA 59.629 50.000 0.00 0.00 42.60 3.72
521 522 2.370849 TGGAAGGGTTTGTCTAGGACAC 59.629 50.000 0.00 0.00 42.60 3.67
522 523 2.696775 TGGAAGGGTTTGTCTAGGACA 58.303 47.619 0.00 0.00 41.09 4.02
523 524 3.559384 CCTTGGAAGGGTTTGTCTAGGAC 60.559 52.174 0.00 0.00 42.66 3.85
524 525 2.642807 CCTTGGAAGGGTTTGTCTAGGA 59.357 50.000 0.00 0.00 42.66 2.94
525 526 3.073274 CCTTGGAAGGGTTTGTCTAGG 57.927 52.381 0.00 0.00 42.66 3.02
536 537 3.497584 GGCAGAAGATATCCCTTGGAAGG 60.498 52.174 0.00 0.00 46.06 3.46
537 538 3.497584 GGGCAGAAGATATCCCTTGGAAG 60.498 52.174 0.00 0.00 34.34 3.46
538 539 2.443255 GGGCAGAAGATATCCCTTGGAA 59.557 50.000 0.00 0.00 34.34 3.53
539 540 2.057922 GGGCAGAAGATATCCCTTGGA 58.942 52.381 0.00 0.00 35.87 3.53
540 541 1.074566 GGGGCAGAAGATATCCCTTGG 59.925 57.143 0.00 0.00 38.78 3.61
541 542 1.074566 GGGGGCAGAAGATATCCCTTG 59.925 57.143 0.00 0.00 38.78 3.61
542 543 1.450360 GGGGGCAGAAGATATCCCTT 58.550 55.000 0.00 0.00 38.78 3.95
543 544 3.188748 GGGGGCAGAAGATATCCCT 57.811 57.895 0.00 0.00 38.78 4.20
576 577 9.722056 GAATCGAGCAGATACAAAATTGTTATT 57.278 29.630 3.85 0.00 42.35 1.40
577 578 8.345565 GGAATCGAGCAGATACAAAATTGTTAT 58.654 33.333 3.85 0.00 42.35 1.89
579 580 6.404734 GGGAATCGAGCAGATACAAAATTGTT 60.405 38.462 3.85 0.00 42.35 2.83
581 582 5.066375 TGGGAATCGAGCAGATACAAAATTG 59.934 40.000 0.00 0.00 38.98 2.32
586 587 3.197766 AGTTGGGAATCGAGCAGATACAA 59.802 43.478 0.00 0.00 38.98 2.41
587 588 2.766263 AGTTGGGAATCGAGCAGATACA 59.234 45.455 0.00 0.00 38.98 2.29
588 589 3.460857 AGTTGGGAATCGAGCAGATAC 57.539 47.619 0.00 0.00 38.98 2.24
589 590 5.784177 GATTAGTTGGGAATCGAGCAGATA 58.216 41.667 0.00 0.00 38.98 1.98
590 591 4.636249 GATTAGTTGGGAATCGAGCAGAT 58.364 43.478 0.00 0.00 42.43 2.90
591 592 4.060038 GATTAGTTGGGAATCGAGCAGA 57.940 45.455 0.00 0.00 0.00 4.26
612 613 2.159448 AGATTTGCTGTCTCGACTCTCG 60.159 50.000 0.00 0.00 42.10 4.04
613 614 3.502191 AGATTTGCTGTCTCGACTCTC 57.498 47.619 0.00 0.00 0.00 3.20
614 615 3.006323 ACAAGATTTGCTGTCTCGACTCT 59.994 43.478 0.00 0.00 0.00 3.24
615 616 3.321497 ACAAGATTTGCTGTCTCGACTC 58.679 45.455 0.00 0.00 0.00 3.36
616 617 3.393089 ACAAGATTTGCTGTCTCGACT 57.607 42.857 0.00 0.00 0.00 4.18
617 618 5.578727 AGATAACAAGATTTGCTGTCTCGAC 59.421 40.000 0.00 0.00 0.00 4.20
966 986 0.958382 TTGGATTTGGAGGGAACGCG 60.958 55.000 3.53 3.53 0.00 6.01
1281 1318 2.119655 CCTGAGCTTCTGCATGGCC 61.120 63.158 0.00 0.00 42.74 5.36
1297 1334 4.070552 GTCCGCGAGCAGGAACCT 62.071 66.667 8.23 0.00 39.84 3.50
1332 1369 2.044555 CATGAGCACCCACAGCCTG 61.045 63.158 0.00 0.00 0.00 4.85
1356 1393 4.405671 TCGGAGGCGACGAGGTCT 62.406 66.667 0.00 0.00 35.12 3.85
1755 1792 0.580104 CGGTGTCAAACAAGACGACC 59.420 55.000 0.00 0.00 41.41 4.79
1780 1817 2.357517 CGCGTCAGCCTTCTTGGT 60.358 61.111 0.00 0.00 41.18 3.67
1854 1891 0.745845 GACTGATCGGGCATTGCAGT 60.746 55.000 11.39 3.83 42.03 4.40
2764 4040 4.154347 CTCCGAGCTGGCCAGGAC 62.154 72.222 33.46 18.21 37.80 3.85
2788 4064 2.577378 GAAGTCGACGAGGCTCGC 60.577 66.667 34.76 25.13 45.12 5.03
2863 4139 4.641645 CCCTCCGTGCAGGCACAA 62.642 66.667 22.69 10.17 46.47 3.33
3074 4353 0.391661 CACCCAAGCTCGTGTGCTAT 60.392 55.000 0.00 0.00 43.24 2.97
3075 4354 1.005037 CACCCAAGCTCGTGTGCTA 60.005 57.895 0.00 0.00 43.24 3.49
3085 4364 1.741706 CATCAGTCATCACACCCAAGC 59.258 52.381 0.00 0.00 0.00 4.01
3138 4417 1.359459 GAGAACTCGCCGCCGAAAAT 61.359 55.000 0.00 0.00 43.87 1.82
3158 4439 2.588989 GAGCAGGGGCAGAGGAAG 59.411 66.667 0.00 0.00 44.61 3.46
3235 4516 6.431234 AGTTTGGCACTCTCTTTTTACATAGG 59.569 38.462 0.00 0.00 0.00 2.57
3251 4536 2.338620 GGGGCGAAAGTTTGGCAC 59.661 61.111 21.91 19.04 38.79 5.01
3261 4546 6.073112 GCGTTATATTTATAAAGTGGGGCGAA 60.073 38.462 3.94 0.00 32.57 4.70
3262 4547 5.409214 GCGTTATATTTATAAAGTGGGGCGA 59.591 40.000 3.94 0.00 32.57 5.54
3263 4548 5.179742 TGCGTTATATTTATAAAGTGGGGCG 59.820 40.000 3.94 5.53 32.57 6.13
3264 4549 6.563222 TGCGTTATATTTATAAAGTGGGGC 57.437 37.500 3.94 4.04 32.57 5.80
3265 4550 7.588488 CGTTTGCGTTATATTTATAAAGTGGGG 59.412 37.037 3.94 0.00 32.57 4.96
3266 4551 8.336806 TCGTTTGCGTTATATTTATAAAGTGGG 58.663 33.333 3.94 0.00 39.49 4.61
3267 4552 9.872757 ATCGTTTGCGTTATATTTATAAAGTGG 57.127 29.630 3.94 0.00 39.49 4.00
3275 4560 9.989869 TTTCATTCATCGTTTGCGTTATATTTA 57.010 25.926 0.00 0.00 39.49 1.40
3276 4561 8.794406 GTTTCATTCATCGTTTGCGTTATATTT 58.206 29.630 0.00 0.00 39.49 1.40
3277 4562 8.181573 AGTTTCATTCATCGTTTGCGTTATATT 58.818 29.630 0.00 0.00 39.49 1.28
3278 4563 7.639850 CAGTTTCATTCATCGTTTGCGTTATAT 59.360 33.333 0.00 0.00 39.49 0.86
3279 4564 6.958752 CAGTTTCATTCATCGTTTGCGTTATA 59.041 34.615 0.00 0.00 39.49 0.98
3280 4565 5.794945 CAGTTTCATTCATCGTTTGCGTTAT 59.205 36.000 0.00 0.00 39.49 1.89
3281 4566 5.143660 CAGTTTCATTCATCGTTTGCGTTA 58.856 37.500 0.00 0.00 39.49 3.18
3282 4567 3.974401 CAGTTTCATTCATCGTTTGCGTT 59.026 39.130 0.00 0.00 39.49 4.84
3283 4568 3.554524 CAGTTTCATTCATCGTTTGCGT 58.445 40.909 0.00 0.00 39.49 5.24
3284 4569 2.339400 GCAGTTTCATTCATCGTTTGCG 59.661 45.455 0.00 0.00 39.92 4.85
3285 4570 3.568538 AGCAGTTTCATTCATCGTTTGC 58.431 40.909 0.00 0.00 0.00 3.68
3312 4597 2.726821 AGTTTGGGCACAGGTATGATG 58.273 47.619 0.00 0.00 0.00 3.07
3315 4600 2.358898 GCATAGTTTGGGCACAGGTATG 59.641 50.000 9.02 9.02 0.00 2.39
3320 4605 1.538047 ACTGCATAGTTTGGGCACAG 58.462 50.000 0.00 0.00 31.66 3.66
3333 4620 3.561310 CGCTGGATTTACATGTACTGCAT 59.439 43.478 4.68 0.00 38.60 3.96
3334 4621 2.935849 CGCTGGATTTACATGTACTGCA 59.064 45.455 4.68 6.84 0.00 4.41
3336 4623 2.287915 GCCGCTGGATTTACATGTACTG 59.712 50.000 4.68 0.00 0.00 2.74
3337 4624 2.170607 AGCCGCTGGATTTACATGTACT 59.829 45.455 4.68 0.00 0.00 2.73
3338 4625 2.544267 GAGCCGCTGGATTTACATGTAC 59.456 50.000 4.68 0.00 0.00 2.90
3339 4626 2.801699 CGAGCCGCTGGATTTACATGTA 60.802 50.000 0.08 0.08 0.00 2.29
3345 4632 0.464036 ATCACGAGCCGCTGGATTTA 59.536 50.000 9.64 0.00 0.00 1.40
3348 4635 1.680522 AAGATCACGAGCCGCTGGAT 61.681 55.000 9.64 4.08 0.00 3.41
3367 4654 1.601914 CGGACATGCGTATGATCGGAA 60.602 52.381 20.86 0.00 37.73 4.30
3369 4656 1.008875 CCGGACATGCGTATGATCGG 61.009 60.000 25.72 25.72 42.08 4.18
3379 4666 4.065088 TGATTAAATCTAGCCGGACATGC 58.935 43.478 5.05 0.00 0.00 4.06
3398 4685 5.438761 TCGAACGACTCATACATGATGAT 57.561 39.130 0.00 0.00 43.78 2.45
3435 4723 7.578310 AAATCTAGCCGTCTGTACTATGTTA 57.422 36.000 0.00 0.00 0.00 2.41
3437 4725 7.578310 TTAAATCTAGCCGTCTGTACTATGT 57.422 36.000 0.00 0.00 0.00 2.29
3438 4726 8.297426 TGATTAAATCTAGCCGTCTGTACTATG 58.703 37.037 0.00 0.00 0.00 2.23
3439 4727 8.405418 TGATTAAATCTAGCCGTCTGTACTAT 57.595 34.615 0.00 0.00 0.00 2.12
3440 4728 7.812690 TGATTAAATCTAGCCGTCTGTACTA 57.187 36.000 0.00 0.00 0.00 1.82
3441 4729 6.710597 TGATTAAATCTAGCCGTCTGTACT 57.289 37.500 0.00 0.00 0.00 2.73
3442 4730 7.145985 TGATGATTAAATCTAGCCGTCTGTAC 58.854 38.462 0.00 0.00 0.00 2.90
3443 4731 7.284919 TGATGATTAAATCTAGCCGTCTGTA 57.715 36.000 0.00 0.00 0.00 2.74
3444 4732 6.161855 TGATGATTAAATCTAGCCGTCTGT 57.838 37.500 0.00 0.00 0.00 3.41
3445 4733 6.648310 ACATGATGATTAAATCTAGCCGTCTG 59.352 38.462 0.00 0.00 0.00 3.51
3446 4734 6.763355 ACATGATGATTAAATCTAGCCGTCT 58.237 36.000 0.00 0.00 0.00 4.18
3447 4735 8.598924 CATACATGATGATTAAATCTAGCCGTC 58.401 37.037 0.00 0.00 37.82 4.79
3448 4736 8.314021 TCATACATGATGATTAAATCTAGCCGT 58.686 33.333 0.00 0.00 39.78 5.68
3449 4737 8.707938 TCATACATGATGATTAAATCTAGCCG 57.292 34.615 0.00 0.00 39.78 5.52
3511 4800 7.747036 ATGCATGTATGTATGAGCGTTTGCG 62.747 44.000 0.00 0.00 37.71 4.85
3512 4801 3.242706 TGCATGTATGTATGAGCGTTTGC 60.243 43.478 0.00 0.00 43.24 3.68
3531 4820 3.415457 TCATTGTGGTGAGTGTATGCA 57.585 42.857 0.00 0.00 0.00 3.96
3532 4821 4.665212 CATTCATTGTGGTGAGTGTATGC 58.335 43.478 0.00 0.00 32.90 3.14
3534 4823 4.156556 GTGCATTCATTGTGGTGAGTGTAT 59.843 41.667 0.00 0.00 37.92 2.29
3561 4850 4.931027 TTAAATTAGGGTAGGGTGTGCA 57.069 40.909 0.00 0.00 0.00 4.57
3601 4890 1.059369 GTATGAGCGCTTGCGTGTG 59.941 57.895 13.26 0.00 45.69 3.82
3603 4892 1.071239 GTATGTATGAGCGCTTGCGTG 60.071 52.381 13.26 0.00 45.69 5.34
3609 4898 2.138320 GTGCATGTATGTATGAGCGCT 58.862 47.619 11.27 11.27 0.00 5.92
3610 4899 1.866601 TGTGCATGTATGTATGAGCGC 59.133 47.619 0.00 0.00 0.00 5.92
3611 4900 3.124128 GGATGTGCATGTATGTATGAGCG 59.876 47.826 0.00 0.00 0.00 5.03
3612 4901 4.321718 AGGATGTGCATGTATGTATGAGC 58.678 43.478 0.00 0.00 0.00 4.26
3613 4902 5.871524 GGTAGGATGTGCATGTATGTATGAG 59.128 44.000 0.00 0.00 0.00 2.90
3614 4903 5.279960 GGGTAGGATGTGCATGTATGTATGA 60.280 44.000 0.00 0.00 0.00 2.15
3615 4904 4.937620 GGGTAGGATGTGCATGTATGTATG 59.062 45.833 0.00 0.00 0.00 2.39
3616 4905 4.019321 GGGGTAGGATGTGCATGTATGTAT 60.019 45.833 0.00 0.00 0.00 2.29
3617 4906 3.326588 GGGGTAGGATGTGCATGTATGTA 59.673 47.826 0.00 0.00 0.00 2.29
3618 4907 2.106511 GGGGTAGGATGTGCATGTATGT 59.893 50.000 0.00 0.00 0.00 2.29
3619 4908 2.373169 AGGGGTAGGATGTGCATGTATG 59.627 50.000 0.00 0.00 0.00 2.39
3620 4909 2.706350 AGGGGTAGGATGTGCATGTAT 58.294 47.619 0.00 0.00 0.00 2.29
3621 4910 2.190398 AGGGGTAGGATGTGCATGTA 57.810 50.000 0.00 0.00 0.00 2.29
3622 4911 2.190398 TAGGGGTAGGATGTGCATGT 57.810 50.000 0.00 0.00 0.00 3.21
3623 4912 2.639347 TCATAGGGGTAGGATGTGCATG 59.361 50.000 0.00 0.00 0.00 4.06
3624 4913 2.909006 CTCATAGGGGTAGGATGTGCAT 59.091 50.000 0.00 0.00 0.00 3.96
3625 4914 2.329267 CTCATAGGGGTAGGATGTGCA 58.671 52.381 0.00 0.00 0.00 4.57
3626 4915 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
3627 4916 2.037772 GTGCTCATAGGGGTAGGATGTG 59.962 54.545 0.00 0.00 0.00 3.21
3628 4917 2.330216 GTGCTCATAGGGGTAGGATGT 58.670 52.381 0.00 0.00 0.00 3.06
3629 4918 1.625818 GGTGCTCATAGGGGTAGGATG 59.374 57.143 0.00 0.00 0.00 3.51
3630 4919 1.509961 AGGTGCTCATAGGGGTAGGAT 59.490 52.381 0.00 0.00 0.00 3.24
3631 4920 0.941963 AGGTGCTCATAGGGGTAGGA 59.058 55.000 0.00 0.00 0.00 2.94
3632 4921 1.694696 GAAGGTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 0.00 3.18
3633 4922 1.341531 CGAAGGTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 0.00 3.18
3634 4923 1.063492 TCGAAGGTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 0.00 3.69
3635 4924 0.325296 TCGAAGGTGCTCATAGGGGT 60.325 55.000 0.00 0.00 0.00 4.95
3636 4925 0.390860 CTCGAAGGTGCTCATAGGGG 59.609 60.000 0.00 0.00 0.00 4.79
3637 4926 1.339610 CTCTCGAAGGTGCTCATAGGG 59.660 57.143 0.00 0.00 0.00 3.53
3638 4927 2.034053 GTCTCTCGAAGGTGCTCATAGG 59.966 54.545 0.00 0.00 0.00 2.57
3639 4928 2.948979 AGTCTCTCGAAGGTGCTCATAG 59.051 50.000 0.00 0.00 0.00 2.23
3640 4929 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
3641 4930 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
3642 4931 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
3643 4932 1.132262 CTCAGTCTCTCGAAGGTGCTC 59.868 57.143 0.00 0.00 0.00 4.26
3644 4933 1.173043 CTCAGTCTCTCGAAGGTGCT 58.827 55.000 0.00 0.00 0.00 4.40
3645 4934 0.457681 GCTCAGTCTCTCGAAGGTGC 60.458 60.000 0.00 0.00 0.00 5.01
3646 4935 0.172352 GGCTCAGTCTCTCGAAGGTG 59.828 60.000 0.00 0.00 0.00 4.00
3647 4936 1.309499 CGGCTCAGTCTCTCGAAGGT 61.309 60.000 0.00 0.00 0.00 3.50
3648 4937 1.027255 TCGGCTCAGTCTCTCGAAGG 61.027 60.000 0.00 0.00 0.00 3.46
3649 4938 0.098025 GTCGGCTCAGTCTCTCGAAG 59.902 60.000 0.00 0.00 0.00 3.79
3650 4939 0.605589 TGTCGGCTCAGTCTCTCGAA 60.606 55.000 0.00 0.00 0.00 3.71
3651 4940 0.393132 ATGTCGGCTCAGTCTCTCGA 60.393 55.000 0.00 0.00 0.00 4.04
3652 4941 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
3653 4942 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
3654 4943 2.621055 GTGATATGTCGGCTCAGTCTCT 59.379 50.000 0.00 0.00 0.00 3.10
3655 4944 2.621055 AGTGATATGTCGGCTCAGTCTC 59.379 50.000 0.00 0.00 0.00 3.36
3656 4945 2.660572 AGTGATATGTCGGCTCAGTCT 58.339 47.619 0.00 0.00 0.00 3.24
3657 4946 4.569761 TTAGTGATATGTCGGCTCAGTC 57.430 45.455 0.00 0.00 0.00 3.51
3658 4947 5.339008 TTTTAGTGATATGTCGGCTCAGT 57.661 39.130 0.00 0.00 0.00 3.41
3659 4948 4.210120 GCTTTTAGTGATATGTCGGCTCAG 59.790 45.833 0.00 0.00 0.00 3.35
3660 4949 4.119862 GCTTTTAGTGATATGTCGGCTCA 58.880 43.478 0.00 0.00 0.00 4.26
3661 4950 3.182572 CGCTTTTAGTGATATGTCGGCTC 59.817 47.826 0.00 0.00 0.00 4.70
3724 5013 1.545651 CCAAGGTTCAAGTCCTGGTCC 60.546 57.143 0.00 0.00 35.27 4.46
3725 5014 1.143073 ACCAAGGTTCAAGTCCTGGTC 59.857 52.381 0.00 0.00 34.12 4.02
3728 5017 1.142870 TCCACCAAGGTTCAAGTCCTG 59.857 52.381 0.00 0.00 39.02 3.86
3751 5040 2.463047 AGAGGGACAGTGGTATCTCC 57.537 55.000 0.00 0.00 30.75 3.71
3752 5041 3.637694 GGTTAGAGGGACAGTGGTATCTC 59.362 52.174 0.00 0.00 0.00 2.75
3753 5042 3.012502 TGGTTAGAGGGACAGTGGTATCT 59.987 47.826 0.00 0.00 0.00 1.98
3781 5070 0.250124 ATTCGCGAACCAACCTGTGA 60.250 50.000 26.00 0.00 0.00 3.58
3784 5073 3.546002 TTAAATTCGCGAACCAACCTG 57.454 42.857 26.00 0.00 0.00 4.00
3787 5076 6.306837 TCAAATGATTAAATTCGCGAACCAAC 59.693 34.615 26.00 13.66 0.00 3.77
3815 5104 8.066612 AGGGTTTCTTCACCATTAATGTATTG 57.933 34.615 14.25 8.32 38.79 1.90
3817 5106 8.557450 AGTAGGGTTTCTTCACCATTAATGTAT 58.443 33.333 14.25 0.00 38.79 2.29
3822 5111 7.319052 TGTAGTAGGGTTTCTTCACCATTAA 57.681 36.000 0.00 0.00 38.79 1.40
3829 5118 5.633655 TGGTTTGTAGTAGGGTTTCTTCA 57.366 39.130 0.00 0.00 0.00 3.02
3893 5182 5.502606 GTGGCTTTTTCGAGTATATGCTTC 58.497 41.667 0.00 0.00 0.00 3.86
3906 5195 4.754322 TCTTGTTTTGAGGTGGCTTTTTC 58.246 39.130 0.00 0.00 0.00 2.29
3944 5233 3.071479 GACGCTTATTTGTTCCTGGTCA 58.929 45.455 0.00 0.00 0.00 4.02
3971 5260 2.822701 GCGTTCGATGGTTCCCCC 60.823 66.667 0.00 0.00 0.00 5.40
3989 5278 4.408993 TCTTGATGTGTTCGAAGCATTG 57.591 40.909 14.07 9.29 0.00 2.82
4003 5292 1.938577 CTCCTCGGCAACATCTTGATG 59.061 52.381 8.87 8.87 0.00 3.07
4028 5317 1.817099 CAGAACGAGAGGGCATGGC 60.817 63.158 11.56 11.56 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.