Multiple sequence alignment - TraesCS2D01G475500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G475500 chr2D 100.000 5096 0 0 1 5096 577830672 577825577 0.000000e+00 9411.0
1 TraesCS2D01G475500 chr2D 82.279 1676 245 34 1038 2687 578307430 578309079 0.000000e+00 1402.0
2 TraesCS2D01G475500 chr2D 81.143 1575 221 39 1038 2578 578040819 578042351 0.000000e+00 1194.0
3 TraesCS2D01G475500 chr2D 80.404 1434 216 30 1032 2451 577581919 577580537 0.000000e+00 1031.0
4 TraesCS2D01G475500 chr2D 78.322 1716 267 74 1026 2680 577802859 577801188 0.000000e+00 1011.0
5 TraesCS2D01G475500 chr2D 78.981 1237 209 26 1227 2451 577440842 577442039 0.000000e+00 797.0
6 TraesCS2D01G475500 chr2D 81.734 646 96 13 1038 1672 578312714 578313348 2.100000e-143 520.0
7 TraesCS2D01G475500 chr2D 96.629 89 2 1 4751 4839 577825835 577825748 4.110000e-31 147.0
8 TraesCS2D01G475500 chr2D 96.629 89 2 1 4838 4925 577825922 577825834 4.110000e-31 147.0
9 TraesCS2D01G475500 chr2D 88.136 118 11 3 2717 2832 268894351 268894467 2.470000e-28 137.0
10 TraesCS2D01G475500 chr2A 92.552 1893 98 27 692 2580 715967527 715965674 0.000000e+00 2675.0
11 TraesCS2D01G475500 chr2A 94.508 965 40 5 3007 3967 715964233 715963278 0.000000e+00 1476.0
12 TraesCS2D01G475500 chr2A 82.635 1670 229 36 1020 2658 716163628 716165267 0.000000e+00 1421.0
13 TraesCS2D01G475500 chr2A 79.779 1449 222 41 1026 2451 715951234 715949834 0.000000e+00 987.0
14 TraesCS2D01G475500 chr2A 92.217 424 21 1 2589 3000 715965583 715965160 1.580000e-164 590.0
15 TraesCS2D01G475500 chr2A 89.003 291 25 5 4549 4839 715962778 715962495 2.260000e-93 353.0
16 TraesCS2D01G475500 chr2A 86.395 294 24 7 3996 4284 715963210 715962928 1.780000e-79 307.0
17 TraesCS2D01G475500 chr2A 88.136 118 12 2 2717 2833 161944741 161944625 6.880000e-29 139.0
18 TraesCS2D01G475500 chr2A 77.559 254 27 15 4449 4678 715947894 715947647 5.360000e-25 126.0
19 TraesCS2D01G475500 chr2B 93.165 1785 79 18 806 2580 695440131 695438380 0.000000e+00 2580.0
20 TraesCS2D01G475500 chr2B 95.987 897 30 1 1005 1901 695414361 695413471 0.000000e+00 1452.0
21 TraesCS2D01G475500 chr2B 84.846 1399 174 20 1038 2414 695508138 695509520 0.000000e+00 1375.0
22 TraesCS2D01G475500 chr2B 93.985 665 32 6 3007 3668 296067386 296066727 0.000000e+00 1000.0
23 TraesCS2D01G475500 chr2B 79.736 1441 221 36 1032 2451 695106851 695108241 0.000000e+00 977.0
24 TraesCS2D01G475500 chr2B 94.028 653 26 5 1928 2580 695412333 695411694 0.000000e+00 977.0
25 TraesCS2D01G475500 chr2B 92.180 601 38 6 3369 3967 695436639 695436046 0.000000e+00 841.0
26 TraesCS2D01G475500 chr2B 95.405 457 21 0 3024 3480 695410264 695409808 0.000000e+00 728.0
27 TraesCS2D01G475500 chr2B 84.429 700 79 19 3694 4381 695409802 695409121 0.000000e+00 662.0
28 TraesCS2D01G475500 chr2B 90.762 433 25 7 2581 3000 695411638 695411208 9.580000e-157 564.0
29 TraesCS2D01G475500 chr2B 90.762 433 25 7 2581 3000 695438324 695437894 9.580000e-157 564.0
30 TraesCS2D01G475500 chr2B 94.493 345 19 0 3024 3368 695436951 695436607 2.700000e-147 532.0
31 TraesCS2D01G475500 chr2B 84.638 345 47 4 3025 3365 695515278 695515620 6.320000e-89 339.0
32 TraesCS2D01G475500 chr2B 87.037 270 26 5 4549 4818 695408867 695408607 3.860000e-76 296.0
33 TraesCS2D01G475500 chr2B 87.597 258 26 5 4129 4381 695435802 695435546 1.390000e-75 294.0
34 TraesCS2D01G475500 chr2B 88.953 172 18 1 4838 5008 695435013 695434842 1.440000e-50 211.0
35 TraesCS2D01G475500 chr2B 87.778 180 11 2 3665 3834 296066648 296066470 3.110000e-47 200.0
36 TraesCS2D01G475500 chr2B 79.801 302 33 16 4396 4678 695376899 695376607 1.450000e-45 195.0
37 TraesCS2D01G475500 chr2B 83.981 206 27 6 4645 4849 695435115 695434915 5.210000e-45 193.0
38 TraesCS2D01G475500 chr2B 76.263 396 54 23 97 487 695440665 695440305 1.890000e-39 174.0
39 TraesCS2D01G475500 chr2B 90.226 133 9 3 3996 4128 695435981 695435853 2.440000e-38 171.0
40 TraesCS2D01G475500 chr2B 93.878 98 6 0 4549 4646 695435373 695435276 1.140000e-31 148.0
41 TraesCS2D01G475500 chr2B 81.875 160 16 6 152 308 695416584 695416435 6.930000e-24 122.0
42 TraesCS2D01G475500 chr2B 90.909 66 5 1 4838 4902 695408674 695408609 2.530000e-13 87.9
43 TraesCS2D01G475500 chr7B 92.840 838 49 2 3007 3834 511462113 511461277 0.000000e+00 1205.0
44 TraesCS2D01G475500 chr7A 92.363 838 43 7 3007 3834 299568522 299567696 0.000000e+00 1173.0
45 TraesCS2D01G475500 chr7A 92.243 838 43 8 3007 3834 296604328 296605153 0.000000e+00 1168.0
46 TraesCS2D01G475500 chr7A 91.647 838 49 10 3007 3834 305708842 305708016 0.000000e+00 1140.0
47 TraesCS2D01G475500 chr3A 90.766 444 31 1 3401 3834 71265643 71266086 7.350000e-163 584.0
48 TraesCS2D01G475500 chrUn 93.897 213 13 0 2581 2793 476501723 476501935 6.360000e-84 322.0
49 TraesCS2D01G475500 chrUn 91.566 166 6 2 2415 2580 476501510 476501667 6.640000e-54 222.0
50 TraesCS2D01G475500 chr3B 91.346 104 8 1 2724 2826 440886205 440886308 1.910000e-29 141.0
51 TraesCS2D01G475500 chr4D 88.785 107 11 1 2725 2830 12445259 12445153 4.140000e-26 130.0
52 TraesCS2D01G475500 chr3D 84.874 119 16 2 2717 2833 168853024 168852906 8.960000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G475500 chr2D 577825577 577830672 5095 True 9411.0000 9411 100.0000 1 5096 1 chr2D.!!$R3 5095
1 TraesCS2D01G475500 chr2D 578040819 578042351 1532 False 1194.0000 1194 81.1430 1038 2578 1 chr2D.!!$F3 1540
2 TraesCS2D01G475500 chr2D 577580537 577581919 1382 True 1031.0000 1031 80.4040 1032 2451 1 chr2D.!!$R1 1419
3 TraesCS2D01G475500 chr2D 577801188 577802859 1671 True 1011.0000 1011 78.3220 1026 2680 1 chr2D.!!$R2 1654
4 TraesCS2D01G475500 chr2D 578307430 578313348 5918 False 961.0000 1402 82.0065 1038 2687 2 chr2D.!!$F4 1649
5 TraesCS2D01G475500 chr2D 577440842 577442039 1197 False 797.0000 797 78.9810 1227 2451 1 chr2D.!!$F2 1224
6 TraesCS2D01G475500 chr2A 716163628 716165267 1639 False 1421.0000 1421 82.6350 1020 2658 1 chr2A.!!$F1 1638
7 TraesCS2D01G475500 chr2A 715962495 715967527 5032 True 1080.2000 2675 90.9350 692 4839 5 chr2A.!!$R3 4147
8 TraesCS2D01G475500 chr2A 715947647 715951234 3587 True 556.5000 987 78.6690 1026 4678 2 chr2A.!!$R2 3652
9 TraesCS2D01G475500 chr2B 695508138 695509520 1382 False 1375.0000 1375 84.8460 1038 2414 1 chr2B.!!$F2 1376
10 TraesCS2D01G475500 chr2B 695106851 695108241 1390 False 977.0000 977 79.7360 1032 2451 1 chr2B.!!$F1 1419
11 TraesCS2D01G475500 chr2B 695408607 695416584 7977 True 611.1125 1452 90.0540 152 4902 8 chr2B.!!$R3 4750
12 TraesCS2D01G475500 chr2B 296066470 296067386 916 True 600.0000 1000 90.8815 3007 3834 2 chr2B.!!$R2 827
13 TraesCS2D01G475500 chr2B 695434842 695440665 5823 True 570.8000 2580 89.1498 97 5008 10 chr2B.!!$R4 4911
14 TraesCS2D01G475500 chr7B 511461277 511462113 836 True 1205.0000 1205 92.8400 3007 3834 1 chr7B.!!$R1 827
15 TraesCS2D01G475500 chr7A 299567696 299568522 826 True 1173.0000 1173 92.3630 3007 3834 1 chr7A.!!$R1 827
16 TraesCS2D01G475500 chr7A 296604328 296605153 825 False 1168.0000 1168 92.2430 3007 3834 1 chr7A.!!$F1 827
17 TraesCS2D01G475500 chr7A 305708016 305708842 826 True 1140.0000 1140 91.6470 3007 3834 1 chr7A.!!$R2 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.096628 GTCGAGATGCTGCAGCTTTG 59.903 55.000 36.61 24.59 42.66 2.77 F
83 84 0.543749 CCATGGTCAACTCCTCCTCC 59.456 60.000 2.57 0.00 0.00 4.30 F
84 85 0.543749 CATGGTCAACTCCTCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30 F
1097 2631 0.759436 ATACCCTAGACCACCCGCTG 60.759 60.000 0.00 0.00 0.00 5.18 F
2198 4887 0.524862 CAGAAAGCGAATTGGCTGCT 59.475 50.000 16.19 13.08 43.93 4.24 F
2769 5708 2.076863 GCAAGGAAAGACTGCGTACAT 58.923 47.619 0.00 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1587 3156 0.725686 CGAGTAGTCGTGACGGACAT 59.274 55.000 11.92 0.0 41.57 3.06 R
2030 4710 3.244814 GTCATAAGCTGCACTGAGAATCG 59.755 47.826 1.02 0.0 38.61 3.34 R
2031 4711 3.244814 CGTCATAAGCTGCACTGAGAATC 59.755 47.826 1.02 0.0 0.00 2.52 R
3000 7287 0.246635 CTCCGTCCCGAATTCAGTGT 59.753 55.000 6.22 0.0 0.00 3.55 R
3001 7288 0.460284 CCTCCGTCCCGAATTCAGTG 60.460 60.000 6.22 0.0 0.00 3.66 R
4523 10285 0.179062 CTGTCTACTGCTCCCCATGC 60.179 60.000 0.00 0.0 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.317449 GCCTTTCAGTACCCGTTGT 57.683 52.632 0.00 0.00 0.00 3.32
19 20 1.154197 GCCTTTCAGTACCCGTTGTC 58.846 55.000 0.00 0.00 0.00 3.18
20 21 1.425412 CCTTTCAGTACCCGTTGTCG 58.575 55.000 0.00 0.00 0.00 4.35
21 22 1.000060 CCTTTCAGTACCCGTTGTCGA 60.000 52.381 0.00 0.00 39.71 4.20
22 23 2.325761 CTTTCAGTACCCGTTGTCGAG 58.674 52.381 0.00 0.00 39.71 4.04
23 24 1.608055 TTCAGTACCCGTTGTCGAGA 58.392 50.000 0.00 0.00 39.71 4.04
24 25 1.830279 TCAGTACCCGTTGTCGAGAT 58.170 50.000 0.00 0.00 39.71 2.75
25 26 1.471287 TCAGTACCCGTTGTCGAGATG 59.529 52.381 0.00 0.00 39.71 2.90
26 27 0.172803 AGTACCCGTTGTCGAGATGC 59.827 55.000 0.00 0.00 39.71 3.91
27 28 0.172803 GTACCCGTTGTCGAGATGCT 59.827 55.000 0.00 0.00 39.71 3.79
28 29 0.172578 TACCCGTTGTCGAGATGCTG 59.827 55.000 0.00 0.00 39.71 4.41
29 30 2.456119 CCCGTTGTCGAGATGCTGC 61.456 63.158 0.00 0.00 39.71 5.25
30 31 1.737735 CCGTTGTCGAGATGCTGCA 60.738 57.895 4.13 4.13 39.71 4.41
31 32 1.690283 CCGTTGTCGAGATGCTGCAG 61.690 60.000 10.11 10.11 39.71 4.41
32 33 1.423056 GTTGTCGAGATGCTGCAGC 59.577 57.895 31.89 31.89 42.50 5.25
33 34 1.018226 GTTGTCGAGATGCTGCAGCT 61.018 55.000 36.61 21.67 42.66 4.24
34 35 0.321034 TTGTCGAGATGCTGCAGCTT 60.321 50.000 36.61 31.25 42.66 3.74
35 36 0.321034 TGTCGAGATGCTGCAGCTTT 60.321 50.000 36.61 25.01 42.66 3.51
36 37 0.096628 GTCGAGATGCTGCAGCTTTG 59.903 55.000 36.61 24.59 42.66 2.77
37 38 1.226323 CGAGATGCTGCAGCTTTGC 60.226 57.895 36.61 23.68 42.66 3.68
38 39 1.226323 GAGATGCTGCAGCTTTGCG 60.226 57.895 36.61 0.70 42.66 4.85
39 40 2.202570 GATGCTGCAGCTTTGCGG 60.203 61.111 36.61 2.45 43.64 5.69
40 41 3.695022 GATGCTGCAGCTTTGCGGG 62.695 63.158 36.61 0.00 41.25 6.13
47 48 3.958860 AGCTTTGCGGGCTGACCT 61.959 61.111 0.00 0.00 38.73 3.85
48 49 2.985847 GCTTTGCGGGCTGACCTT 60.986 61.111 0.00 0.00 36.97 3.50
49 50 2.982744 GCTTTGCGGGCTGACCTTC 61.983 63.158 0.00 0.00 36.97 3.46
50 51 1.302832 CTTTGCGGGCTGACCTTCT 60.303 57.895 0.00 0.00 36.97 2.85
51 52 1.301677 CTTTGCGGGCTGACCTTCTC 61.302 60.000 0.00 0.00 36.97 2.87
52 53 1.768684 TTTGCGGGCTGACCTTCTCT 61.769 55.000 0.00 0.00 36.97 3.10
53 54 1.768684 TTGCGGGCTGACCTTCTCTT 61.769 55.000 0.00 0.00 36.97 2.85
54 55 1.448717 GCGGGCTGACCTTCTCTTC 60.449 63.158 0.00 0.00 36.97 2.87
55 56 1.893919 GCGGGCTGACCTTCTCTTCT 61.894 60.000 0.00 0.00 36.97 2.85
56 57 1.475403 CGGGCTGACCTTCTCTTCTA 58.525 55.000 0.00 0.00 36.97 2.10
57 58 1.825474 CGGGCTGACCTTCTCTTCTAA 59.175 52.381 0.00 0.00 36.97 2.10
58 59 2.432510 CGGGCTGACCTTCTCTTCTAAT 59.567 50.000 0.00 0.00 36.97 1.73
59 60 3.491792 CGGGCTGACCTTCTCTTCTAATC 60.492 52.174 0.00 0.00 36.97 1.75
60 61 3.181459 GGGCTGACCTTCTCTTCTAATCC 60.181 52.174 0.00 0.00 35.85 3.01
61 62 3.709141 GGCTGACCTTCTCTTCTAATCCT 59.291 47.826 0.00 0.00 0.00 3.24
62 63 4.163268 GGCTGACCTTCTCTTCTAATCCTT 59.837 45.833 0.00 0.00 0.00 3.36
63 64 5.338789 GGCTGACCTTCTCTTCTAATCCTTT 60.339 44.000 0.00 0.00 0.00 3.11
64 65 5.815222 GCTGACCTTCTCTTCTAATCCTTTC 59.185 44.000 0.00 0.00 0.00 2.62
65 66 6.301169 TGACCTTCTCTTCTAATCCTTTCC 57.699 41.667 0.00 0.00 0.00 3.13
66 67 5.785423 TGACCTTCTCTTCTAATCCTTTCCA 59.215 40.000 0.00 0.00 0.00 3.53
67 68 6.445139 TGACCTTCTCTTCTAATCCTTTCCAT 59.555 38.462 0.00 0.00 0.00 3.41
68 69 6.657875 ACCTTCTCTTCTAATCCTTTCCATG 58.342 40.000 0.00 0.00 0.00 3.66
69 70 6.060788 CCTTCTCTTCTAATCCTTTCCATGG 58.939 44.000 4.97 4.97 0.00 3.66
70 71 6.353429 CCTTCTCTTCTAATCCTTTCCATGGT 60.353 42.308 12.58 0.00 0.00 3.55
71 72 6.240549 TCTCTTCTAATCCTTTCCATGGTC 57.759 41.667 12.58 0.00 0.00 4.02
72 73 5.726308 TCTCTTCTAATCCTTTCCATGGTCA 59.274 40.000 12.58 0.00 0.00 4.02
73 74 6.215431 TCTCTTCTAATCCTTTCCATGGTCAA 59.785 38.462 12.58 5.31 0.00 3.18
74 75 6.180472 TCTTCTAATCCTTTCCATGGTCAAC 58.820 40.000 12.58 0.00 0.00 3.18
75 76 5.779241 TCTAATCCTTTCCATGGTCAACT 57.221 39.130 12.58 0.00 0.00 3.16
76 77 5.745227 TCTAATCCTTTCCATGGTCAACTC 58.255 41.667 12.58 0.00 0.00 3.01
77 78 2.879103 TCCTTTCCATGGTCAACTCC 57.121 50.000 12.58 0.00 0.00 3.85
78 79 2.348472 TCCTTTCCATGGTCAACTCCT 58.652 47.619 12.58 0.00 0.00 3.69
79 80 2.305927 TCCTTTCCATGGTCAACTCCTC 59.694 50.000 12.58 0.00 0.00 3.71
80 81 2.619074 CCTTTCCATGGTCAACTCCTCC 60.619 54.545 12.58 0.00 0.00 4.30
81 82 2.044793 TTCCATGGTCAACTCCTCCT 57.955 50.000 12.58 0.00 0.00 3.69
82 83 1.573108 TCCATGGTCAACTCCTCCTC 58.427 55.000 12.58 0.00 0.00 3.71
83 84 0.543749 CCATGGTCAACTCCTCCTCC 59.456 60.000 2.57 0.00 0.00 4.30
84 85 0.543749 CATGGTCAACTCCTCCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
85 86 0.978146 ATGGTCAACTCCTCCTCCCG 60.978 60.000 0.00 0.00 0.00 5.14
86 87 2.359967 GGTCAACTCCTCCTCCCGG 61.360 68.421 0.00 0.00 0.00 5.73
87 88 2.038975 TCAACTCCTCCTCCCGGG 59.961 66.667 16.85 16.85 0.00 5.73
88 89 3.787001 CAACTCCTCCTCCCGGGC 61.787 72.222 18.49 0.00 34.39 6.13
91 92 4.806339 CTCCTCCTCCCGGGCCTT 62.806 72.222 18.49 0.00 34.39 4.35
94 95 3.009115 CTCCTCCCGGGCCTTGAA 61.009 66.667 18.49 0.00 34.39 2.69
95 96 2.286121 TCCTCCCGGGCCTTGAAT 60.286 61.111 18.49 0.00 34.39 2.57
102 103 2.243736 TCCCGGGCCTTGAATTCTAAAT 59.756 45.455 18.49 0.00 0.00 1.40
103 104 3.031013 CCCGGGCCTTGAATTCTAAATT 58.969 45.455 8.08 0.00 0.00 1.82
122 123 9.238368 TCTAAATTACCAATTTCATTCCGAACT 57.762 29.630 0.36 0.00 41.16 3.01
124 125 5.890424 TTACCAATTTCATTCCGAACTCC 57.110 39.130 0.00 0.00 31.73 3.85
126 127 4.407365 ACCAATTTCATTCCGAACTCCTT 58.593 39.130 0.00 0.00 31.73 3.36
129 130 6.492087 ACCAATTTCATTCCGAACTCCTTTTA 59.508 34.615 0.00 0.00 31.73 1.52
130 131 7.014808 ACCAATTTCATTCCGAACTCCTTTTAA 59.985 33.333 0.00 0.00 31.73 1.52
133 134 9.825109 AATTTCATTCCGAACTCCTTTTAAAAA 57.175 25.926 1.66 0.00 31.73 1.94
134 135 9.996554 ATTTCATTCCGAACTCCTTTTAAAAAT 57.003 25.926 1.66 0.00 31.73 1.82
136 137 8.172352 TCATTCCGAACTCCTTTTAAAAATGA 57.828 30.769 1.66 1.96 0.00 2.57
137 138 8.634444 TCATTCCGAACTCCTTTTAAAAATGAA 58.366 29.630 1.66 0.00 0.00 2.57
142 143 9.301153 CCGAACTCCTTTTAAAAATGAATATGG 57.699 33.333 1.66 0.00 0.00 2.74
191 192 2.548127 CTAGCGCTGCTTTTTGGGCC 62.548 60.000 22.90 0.00 42.05 5.80
192 193 4.298069 GCGCTGCTTTTTGGGCCA 62.298 61.111 0.00 0.00 36.35 5.36
193 194 2.048877 CGCTGCTTTTTGGGCCAG 60.049 61.111 6.23 0.00 0.00 4.85
194 195 2.357881 GCTGCTTTTTGGGCCAGC 60.358 61.111 6.23 7.53 0.00 4.85
195 196 2.344872 CTGCTTTTTGGGCCAGCC 59.655 61.111 6.23 0.00 32.11 4.85
225 226 1.098050 GGCAGCGGTGAGATTTTGAT 58.902 50.000 20.69 0.00 0.00 2.57
258 259 2.963548 GTTCTAGAACCTTCTCCCCG 57.036 55.000 22.74 0.00 38.70 5.73
285 287 4.293662 GGAAGATTCCAGAAGGTCTTGT 57.706 45.455 6.74 0.00 46.76 3.16
369 371 9.490663 CCTTTTTAATTCGTGAAGATATGTCAC 57.509 33.333 6.19 6.19 41.66 3.67
377 379 6.340522 TCGTGAAGATATGTCACATTCACAT 58.659 36.000 17.92 0.00 46.34 3.21
382 384 9.617523 TGAAGATATGTCACATTCACATACATT 57.382 29.630 0.00 0.00 39.09 2.71
389 391 8.339344 TGTCACATTCACATACATTCTTTGAT 57.661 30.769 0.00 0.00 0.00 2.57
390 392 8.795513 TGTCACATTCACATACATTCTTTGATT 58.204 29.630 0.00 0.00 0.00 2.57
391 393 9.630098 GTCACATTCACATACATTCTTTGATTT 57.370 29.630 0.00 0.00 0.00 2.17
394 396 9.985730 ACATTCACATACATTCTTTGATTTTGT 57.014 25.926 0.00 0.00 0.00 2.83
396 398 9.985730 ATTCACATACATTCTTTGATTTTGTGT 57.014 25.926 0.00 0.00 0.00 3.72
397 399 9.814899 TTCACATACATTCTTTGATTTTGTGTT 57.185 25.926 0.00 0.00 0.00 3.32
472 474 9.656040 TGAATCCAAGGACATTTTTAATTCATG 57.344 29.630 0.00 0.00 0.00 3.07
473 475 9.874205 GAATCCAAGGACATTTTTAATTCATGA 57.126 29.630 0.00 0.00 0.00 3.07
474 476 9.880157 AATCCAAGGACATTTTTAATTCATGAG 57.120 29.630 0.00 0.00 0.00 2.90
475 477 7.322664 TCCAAGGACATTTTTAATTCATGAGC 58.677 34.615 0.00 0.00 0.00 4.26
476 478 7.039152 TCCAAGGACATTTTTAATTCATGAGCA 60.039 33.333 0.00 0.00 0.00 4.26
477 479 7.767198 CCAAGGACATTTTTAATTCATGAGCAT 59.233 33.333 0.00 0.00 0.00 3.79
478 480 9.158233 CAAGGACATTTTTAATTCATGAGCATT 57.842 29.630 0.00 0.00 0.00 3.56
479 481 9.729281 AAGGACATTTTTAATTCATGAGCATTT 57.271 25.926 0.00 0.00 0.00 2.32
480 482 9.729281 AGGACATTTTTAATTCATGAGCATTTT 57.271 25.926 0.00 0.00 0.00 1.82
650 654 4.678509 TCCGTGGAATTCTTTCAATTCG 57.321 40.909 5.23 0.00 37.48 3.34
651 655 4.320023 TCCGTGGAATTCTTTCAATTCGA 58.680 39.130 5.23 0.00 37.48 3.71
780 803 4.477780 TCAAACTTTTGAACGGTGTTCAC 58.522 39.130 11.61 0.00 43.62 3.18
781 804 3.497297 AACTTTTGAACGGTGTTCACC 57.503 42.857 11.61 11.53 0.00 4.02
789 812 4.515361 TGAACGGTGTTCACCTTAAGAAA 58.485 39.130 18.07 0.00 0.00 2.52
953 979 2.034879 CAGGCCCACGTAGTTGCTG 61.035 63.158 0.00 0.00 41.61 4.41
957 983 1.017701 GCCCACGTAGTTGCTGGTAC 61.018 60.000 0.00 0.00 41.61 3.34
967 993 2.345991 GCTGGTACTGCGGTTGGA 59.654 61.111 1.99 0.00 44.58 3.53
970 996 2.172483 CTGGTACTGCGGTTGGAGCT 62.172 60.000 1.99 0.00 36.97 4.09
973 999 1.671054 TACTGCGGTTGGAGCTTGC 60.671 57.895 1.99 0.00 36.97 4.01
974 1000 3.741476 CTGCGGTTGGAGCTTGCC 61.741 66.667 0.00 0.00 35.28 4.52
975 1001 4.269523 TGCGGTTGGAGCTTGCCT 62.270 61.111 0.00 0.00 35.28 4.75
976 1002 2.985847 GCGGTTGGAGCTTGCCTT 60.986 61.111 0.00 0.00 0.00 4.35
1097 2631 0.759436 ATACCCTAGACCACCCGCTG 60.759 60.000 0.00 0.00 0.00 5.18
1537 3106 1.596934 CTACGGCAGCTCCCTTGAA 59.403 57.895 0.00 0.00 0.00 2.69
1545 3114 2.731572 CAGCTCCCTTGAATTCCACAT 58.268 47.619 2.27 0.00 0.00 3.21
1587 3156 3.376078 GCCGTCCCGTGTGGTCTA 61.376 66.667 0.00 0.00 34.77 2.59
1935 4615 3.068024 ACGCTTTTTCTTTGGATCTGCAA 59.932 39.130 0.00 0.00 0.00 4.08
2030 4710 2.289945 ACCAGCTGTTCAGTGGAAGATC 60.290 50.000 13.81 0.00 35.17 2.75
2031 4711 1.998315 CAGCTGTTCAGTGGAAGATCG 59.002 52.381 5.25 0.00 32.62 3.69
2097 4778 3.652057 TTCTATTTGCCCCTGGAAGAG 57.348 47.619 0.00 0.00 34.07 2.85
2198 4887 0.524862 CAGAAAGCGAATTGGCTGCT 59.475 50.000 16.19 13.08 43.93 4.24
2272 4973 2.549064 TCTTGTGTCTGACCATGGTG 57.451 50.000 25.52 9.30 0.00 4.17
2348 5054 6.013898 TCCTGAGAGGATTGGATTGATGTATC 60.014 42.308 0.00 0.00 40.06 2.24
2516 5365 2.435372 TGTCAAGGGTTTCTGCAGTT 57.565 45.000 14.67 0.00 0.00 3.16
2517 5366 3.569194 TGTCAAGGGTTTCTGCAGTTA 57.431 42.857 14.67 0.00 0.00 2.24
2518 5367 4.098914 TGTCAAGGGTTTCTGCAGTTAT 57.901 40.909 14.67 0.00 0.00 1.89
2520 5369 5.626142 TGTCAAGGGTTTCTGCAGTTATAA 58.374 37.500 14.67 0.00 0.00 0.98
2521 5370 6.245408 TGTCAAGGGTTTCTGCAGTTATAAT 58.755 36.000 14.67 0.00 0.00 1.28
2722 5661 8.034058 AGCTAGATTTGTCAATAGTGTTCAAC 57.966 34.615 0.00 0.00 0.00 3.18
2764 5703 2.227388 AGAAATGCAAGGAAAGACTGCG 59.773 45.455 0.00 0.00 0.00 5.18
2769 5708 2.076863 GCAAGGAAAGACTGCGTACAT 58.923 47.619 0.00 0.00 0.00 2.29
2782 5721 4.221262 ACTGCGTACATAAGACCCAAAGTA 59.779 41.667 0.00 0.00 0.00 2.24
2866 5830 9.566432 AATATTAAGAGGGTTTCTGCAGATTAG 57.434 33.333 19.04 0.00 35.91 1.73
2948 5912 7.782049 TGAATAGGTAGATTTGTCAGTAGTGG 58.218 38.462 0.00 0.00 0.00 4.00
3000 7287 7.675962 ATGCTCAATGGTAAGTTACGTTTTA 57.324 32.000 6.94 0.00 0.00 1.52
3001 7288 6.890558 TGCTCAATGGTAAGTTACGTTTTAC 58.109 36.000 6.94 0.90 0.00 2.01
3002 7289 6.482641 TGCTCAATGGTAAGTTACGTTTTACA 59.517 34.615 6.94 0.00 32.68 2.41
3003 7290 6.793680 GCTCAATGGTAAGTTACGTTTTACAC 59.206 38.462 6.94 8.20 32.68 2.90
3005 7292 7.853524 TCAATGGTAAGTTACGTTTTACACTG 58.146 34.615 6.94 0.00 32.68 3.66
3210 8556 8.763984 AAGAAGCTTTGATTAAGGATGATGAT 57.236 30.769 0.00 0.00 34.26 2.45
3486 8868 7.666388 GGTAGCTGAATAAGTCTATCAGGAGTA 59.334 40.741 0.00 0.00 0.00 2.59
3488 8870 8.177119 AGCTGAATAAGTCTATCAGGAGTAAG 57.823 38.462 10.54 0.00 0.00 2.34
3536 8918 1.340405 ACTTGCCTGGCCTGATAAGTG 60.340 52.381 21.79 4.41 0.00 3.16
3623 9007 0.615331 TTGAGGCAGCTGGAGTTAGG 59.385 55.000 17.12 0.00 0.00 2.69
3635 9019 4.383226 GCTGGAGTTAGGAAGGAGTTTAGG 60.383 50.000 0.00 0.00 0.00 2.69
3844 9371 6.658816 TGTGATGATGGTATGTGCTAAGTTTT 59.341 34.615 0.00 0.00 0.00 2.43
3845 9372 7.148255 TGTGATGATGGTATGTGCTAAGTTTTC 60.148 37.037 0.00 0.00 0.00 2.29
3893 9431 7.041721 TGACTGTAACCATCATCAGTATTCAC 58.958 38.462 0.00 0.00 40.53 3.18
3894 9432 7.093333 TGACTGTAACCATCATCAGTATTCACT 60.093 37.037 0.00 0.00 40.53 3.41
3895 9433 8.306313 ACTGTAACCATCATCAGTATTCACTA 57.694 34.615 0.00 0.00 39.01 2.74
3896 9434 8.928448 ACTGTAACCATCATCAGTATTCACTAT 58.072 33.333 0.00 0.00 39.01 2.12
3897 9435 9.770097 CTGTAACCATCATCAGTATTCACTATT 57.230 33.333 0.00 0.00 32.21 1.73
3898 9436 9.764363 TGTAACCATCATCAGTATTCACTATTC 57.236 33.333 0.00 0.00 32.21 1.75
3899 9437 9.764363 GTAACCATCATCAGTATTCACTATTCA 57.236 33.333 0.00 0.00 32.21 2.57
3974 9518 7.752239 CGTCGTTTTAGAGATTACCTAGAAACA 59.248 37.037 0.00 0.00 0.00 2.83
3994 9545 3.244561 ACATACAGGTCTCAAACTGGTGG 60.245 47.826 0.00 0.00 39.00 4.61
4071 9661 2.596419 GTGCGAGAGAGTTTGAAGATCG 59.404 50.000 0.00 0.00 0.00 3.69
4112 9702 7.557358 TGTGACCATTCTCTGTTGCATATAATT 59.443 33.333 0.00 0.00 0.00 1.40
4125 9803 9.743057 TGTTGCATATAATTACTAAAATGGCAC 57.257 29.630 0.00 0.00 0.00 5.01
4145 9832 5.123227 GCACCTTTTTAGCTTTTCCCTTTT 58.877 37.500 0.00 0.00 0.00 2.27
4160 9847 2.611224 CCCTTTTGCCAAGATGCTTGTC 60.611 50.000 6.44 0.00 0.00 3.18
4223 9913 5.475564 TGACCAAAAGGTTAAATAGTCAGGC 59.524 40.000 0.00 0.00 0.00 4.85
4241 9931 2.568509 AGGCTTATTTTGGTTGCAGCAT 59.431 40.909 2.05 0.00 0.00 3.79
4343 10045 8.015185 ACAGATTATTATTTCCTGCATTTGCT 57.985 30.769 3.94 0.00 42.66 3.91
4345 10047 7.325338 CAGATTATTATTTCCTGCATTTGCTCG 59.675 37.037 3.94 0.00 42.66 5.03
4349 10051 0.961019 TTCCTGCATTTGCTCGCTTT 59.039 45.000 3.94 0.00 42.66 3.51
4350 10052 0.961019 TCCTGCATTTGCTCGCTTTT 59.039 45.000 3.94 0.00 42.66 2.27
4385 10088 8.615878 TTTTATGCTAGCTCACAAGTTAAGAA 57.384 30.769 17.23 0.00 0.00 2.52
4386 10089 8.615878 TTTATGCTAGCTCACAAGTTAAGAAA 57.384 30.769 17.23 0.00 0.00 2.52
4389 10092 7.510549 TGCTAGCTCACAAGTTAAGAAAATT 57.489 32.000 17.23 0.00 0.00 1.82
4391 10094 7.862372 TGCTAGCTCACAAGTTAAGAAAATTTG 59.138 33.333 17.23 0.00 0.00 2.32
4424 10186 0.837691 AGTGGTCAGGCTGTCCATCA 60.838 55.000 30.98 9.99 37.84 3.07
4426 10188 0.770499 TGGTCAGGCTGTCCATCAAA 59.230 50.000 26.28 6.52 30.83 2.69
4432 10194 5.047377 GGTCAGGCTGTCCATCAAATTTAAA 60.047 40.000 23.28 0.00 33.74 1.52
4435 10197 6.267471 TCAGGCTGTCCATCAAATTTAAACTT 59.733 34.615 15.27 0.00 33.74 2.66
4496 10258 8.714179 CAGACTACACCGAATTTTGTTAACATA 58.286 33.333 9.56 1.25 0.00 2.29
4547 10309 1.205893 GGGGAGCAGTAGACAGTTCTG 59.794 57.143 0.00 0.00 32.75 3.02
4601 10415 2.172717 AGTCTTGTACAGGCACCAAAGT 59.827 45.455 0.00 0.00 0.00 2.66
4613 10427 5.416952 CAGGCACCAAAGTCATCTTCTATTT 59.583 40.000 0.00 0.00 32.90 1.40
4682 11273 5.603170 AATGGAAAATGGACATGGCTAAG 57.397 39.130 0.00 0.00 0.00 2.18
4706 11297 1.656652 CATGACCTGGACCTTTAGCG 58.343 55.000 0.00 0.00 0.00 4.26
4712 11303 2.349755 GGACCTTTAGCGCACCCA 59.650 61.111 11.47 0.00 0.00 4.51
4715 11306 2.180159 GACCTTTAGCGCACCCAGGA 62.180 60.000 18.55 0.00 0.00 3.86
4727 11318 2.738743 CACCCAGGATGTTGCCTTATT 58.261 47.619 0.00 0.00 35.66 1.40
4731 11322 4.020307 ACCCAGGATGTTGCCTTATTTTTG 60.020 41.667 0.00 0.00 35.66 2.44
4732 11323 4.020307 CCCAGGATGTTGCCTTATTTTTGT 60.020 41.667 0.00 0.00 35.66 2.83
4733 11324 5.512921 CCCAGGATGTTGCCTTATTTTTGTT 60.513 40.000 0.00 0.00 35.66 2.83
4736 11327 7.013178 CCAGGATGTTGCCTTATTTTTGTTTTT 59.987 33.333 0.00 0.00 35.66 1.94
4818 11409 8.422577 AGGCTAGAAAAATAAACTGGAACAAT 57.577 30.769 0.00 0.00 38.70 2.71
4819 11410 8.523658 AGGCTAGAAAAATAAACTGGAACAATC 58.476 33.333 0.00 0.00 38.70 2.67
4850 11441 9.305925 AGAAATTGAAGACAAGAACATTGTTTC 57.694 29.630 3.08 0.00 39.46 2.78
4851 11442 9.086336 GAAATTGAAGACAAGAACATTGTTTCA 57.914 29.630 3.08 0.00 39.46 2.69
4852 11443 8.638685 AATTGAAGACAAGAACATTGTTTCAG 57.361 30.769 3.08 0.00 39.46 3.02
4853 11444 6.757897 TGAAGACAAGAACATTGTTTCAGT 57.242 33.333 3.08 2.81 31.96 3.41
4854 11445 7.156876 TGAAGACAAGAACATTGTTTCAGTT 57.843 32.000 3.08 0.00 31.96 3.16
4855 11446 7.601856 TGAAGACAAGAACATTGTTTCAGTTT 58.398 30.769 3.08 0.00 31.96 2.66
4856 11447 8.735315 TGAAGACAAGAACATTGTTTCAGTTTA 58.265 29.630 3.08 0.00 31.96 2.01
4857 11448 9.736023 GAAGACAAGAACATTGTTTCAGTTTAT 57.264 29.630 3.08 0.00 31.96 1.40
4859 11450 9.736023 AGACAAGAACATTGTTTCAGTTTATTC 57.264 29.630 3.08 0.00 31.96 1.75
4860 11451 9.736023 GACAAGAACATTGTTTCAGTTTATTCT 57.264 29.630 3.08 0.00 31.96 2.40
4883 11474 8.662781 TCTAAATCATTGTATACAGACAAGGC 57.337 34.615 5.56 0.00 42.38 4.35
4884 11475 8.486210 TCTAAATCATTGTATACAGACAAGGCT 58.514 33.333 5.56 0.00 42.38 4.58
4885 11476 9.764363 CTAAATCATTGTATACAGACAAGGCTA 57.236 33.333 5.56 0.00 42.38 3.93
4886 11477 8.668510 AAATCATTGTATACAGACAAGGCTAG 57.331 34.615 5.56 0.00 42.38 3.42
4887 11478 7.603180 ATCATTGTATACAGACAAGGCTAGA 57.397 36.000 5.56 0.00 42.38 2.43
4888 11479 7.418337 TCATTGTATACAGACAAGGCTAGAA 57.582 36.000 5.56 0.00 42.38 2.10
4889 11480 7.847096 TCATTGTATACAGACAAGGCTAGAAA 58.153 34.615 5.56 0.00 42.38 2.52
4890 11481 8.318412 TCATTGTATACAGACAAGGCTAGAAAA 58.682 33.333 5.56 0.00 42.38 2.29
4891 11482 9.113838 CATTGTATACAGACAAGGCTAGAAAAT 57.886 33.333 5.56 0.00 42.38 1.82
4897 11488 7.440523 ACAGACAAGGCTAGAAAATAAACTG 57.559 36.000 0.00 0.00 0.00 3.16
4898 11489 6.431234 ACAGACAAGGCTAGAAAATAAACTGG 59.569 38.462 0.00 0.00 0.00 4.00
4899 11490 6.655003 CAGACAAGGCTAGAAAATAAACTGGA 59.345 38.462 0.00 0.00 0.00 3.86
4900 11491 7.174946 CAGACAAGGCTAGAAAATAAACTGGAA 59.825 37.037 0.00 0.00 0.00 3.53
4901 11492 7.175119 AGACAAGGCTAGAAAATAAACTGGAAC 59.825 37.037 0.00 0.00 0.00 3.62
4902 11493 6.072673 ACAAGGCTAGAAAATAAACTGGAACG 60.073 38.462 0.00 0.00 0.00 3.95
4903 11494 5.801380 AGGCTAGAAAATAAACTGGAACGA 58.199 37.500 0.00 0.00 0.00 3.85
4904 11495 6.415573 AGGCTAGAAAATAAACTGGAACGAT 58.584 36.000 0.00 0.00 0.00 3.73
4905 11496 6.539103 AGGCTAGAAAATAAACTGGAACGATC 59.461 38.462 0.00 0.00 0.00 3.69
4906 11497 6.315393 GGCTAGAAAATAAACTGGAACGATCA 59.685 38.462 0.00 0.00 0.00 2.92
4907 11498 7.148306 GGCTAGAAAATAAACTGGAACGATCAA 60.148 37.037 0.00 0.00 0.00 2.57
4908 11499 8.234546 GCTAGAAAATAAACTGGAACGATCAAA 58.765 33.333 0.00 0.00 0.00 2.69
4917 11508 8.970691 AAACTGGAACGATCAAATAGAAATTG 57.029 30.769 0.00 0.00 0.00 2.32
4918 11509 7.921786 ACTGGAACGATCAAATAGAAATTGA 57.078 32.000 0.00 0.00 40.76 2.57
4919 11510 8.335532 ACTGGAACGATCAAATAGAAATTGAA 57.664 30.769 0.00 0.00 39.98 2.69
4920 11511 8.454106 ACTGGAACGATCAAATAGAAATTGAAG 58.546 33.333 0.00 0.00 39.98 3.02
4921 11512 8.560355 TGGAACGATCAAATAGAAATTGAAGA 57.440 30.769 0.00 0.00 39.98 2.87
4922 11513 8.450964 TGGAACGATCAAATAGAAATTGAAGAC 58.549 33.333 0.00 0.00 39.98 3.01
4923 11514 8.450964 GGAACGATCAAATAGAAATTGAAGACA 58.549 33.333 0.00 0.00 39.98 3.41
4924 11515 9.825972 GAACGATCAAATAGAAATTGAAGACAA 57.174 29.630 0.00 0.00 39.98 3.18
4958 11549 0.523072 GGATGCACCACACACATCAC 59.477 55.000 0.00 0.00 41.58 3.06
4974 11565 2.203015 ACGCTTCAGCACAACGGT 60.203 55.556 0.00 0.00 42.21 4.83
4991 11582 0.594602 GGTAAACCTGAACCGTTGGC 59.405 55.000 0.00 0.00 0.00 4.52
4995 11586 0.106918 AACCTGAACCGTTGGCTGAA 60.107 50.000 0.00 0.00 0.00 3.02
5008 11599 3.540314 TGGCTGAACAACAAATGCTTT 57.460 38.095 0.00 0.00 0.00 3.51
5009 11600 3.871485 TGGCTGAACAACAAATGCTTTT 58.129 36.364 0.00 0.00 0.00 2.27
5010 11601 4.260170 TGGCTGAACAACAAATGCTTTTT 58.740 34.783 0.00 0.00 0.00 1.94
5037 11628 9.546428 TCTGTATGTATATGTGAACATCAAAGG 57.454 33.333 0.00 0.00 37.50 3.11
5038 11629 9.330063 CTGTATGTATATGTGAACATCAAAGGT 57.670 33.333 0.00 0.00 37.50 3.50
5039 11630 9.679661 TGTATGTATATGTGAACATCAAAGGTT 57.320 29.630 0.00 0.00 37.50 3.50
5042 11633 9.905713 ATGTATATGTGAACATCAAAGGTTACT 57.094 29.630 0.00 0.00 37.76 2.24
5043 11634 9.378551 TGTATATGTGAACATCAAAGGTTACTC 57.621 33.333 0.00 0.00 37.76 2.59
5044 11635 9.601217 GTATATGTGAACATCAAAGGTTACTCT 57.399 33.333 0.00 0.00 37.76 3.24
5045 11636 8.723942 ATATGTGAACATCAAAGGTTACTCTC 57.276 34.615 0.00 0.00 37.76 3.20
5046 11637 6.174720 TGTGAACATCAAAGGTTACTCTCT 57.825 37.500 0.00 0.00 0.00 3.10
5047 11638 6.223852 TGTGAACATCAAAGGTTACTCTCTC 58.776 40.000 0.00 0.00 0.00 3.20
5048 11639 6.042093 TGTGAACATCAAAGGTTACTCTCTCT 59.958 38.462 0.00 0.00 0.00 3.10
5049 11640 6.931840 GTGAACATCAAAGGTTACTCTCTCTT 59.068 38.462 0.00 0.00 0.00 2.85
5050 11641 6.931281 TGAACATCAAAGGTTACTCTCTCTTG 59.069 38.462 0.00 0.00 0.00 3.02
5051 11642 6.426646 ACATCAAAGGTTACTCTCTCTTGT 57.573 37.500 0.00 0.00 0.00 3.16
5052 11643 6.831976 ACATCAAAGGTTACTCTCTCTTGTT 58.168 36.000 0.00 0.00 0.00 2.83
5053 11644 6.708054 ACATCAAAGGTTACTCTCTCTTGTTG 59.292 38.462 0.00 0.00 0.00 3.33
5054 11645 5.611374 TCAAAGGTTACTCTCTCTTGTTGG 58.389 41.667 0.00 0.00 0.00 3.77
5055 11646 5.130477 TCAAAGGTTACTCTCTCTTGTTGGT 59.870 40.000 0.00 0.00 0.00 3.67
5056 11647 5.632034 AAGGTTACTCTCTCTTGTTGGTT 57.368 39.130 0.00 0.00 0.00 3.67
5057 11648 4.962155 AGGTTACTCTCTCTTGTTGGTTG 58.038 43.478 0.00 0.00 0.00 3.77
5058 11649 4.409247 AGGTTACTCTCTCTTGTTGGTTGT 59.591 41.667 0.00 0.00 0.00 3.32
5059 11650 4.750598 GGTTACTCTCTCTTGTTGGTTGTC 59.249 45.833 0.00 0.00 0.00 3.18
5060 11651 3.477210 ACTCTCTCTTGTTGGTTGTCC 57.523 47.619 0.00 0.00 0.00 4.02
5061 11652 2.104963 ACTCTCTCTTGTTGGTTGTCCC 59.895 50.000 0.00 0.00 0.00 4.46
5062 11653 1.420138 TCTCTCTTGTTGGTTGTCCCC 59.580 52.381 0.00 0.00 0.00 4.81
5063 11654 1.142870 CTCTCTTGTTGGTTGTCCCCA 59.857 52.381 0.00 0.00 0.00 4.96
5064 11655 1.780309 TCTCTTGTTGGTTGTCCCCAT 59.220 47.619 0.00 0.00 33.60 4.00
5065 11656 2.162681 CTCTTGTTGGTTGTCCCCATC 58.837 52.381 0.00 0.00 33.60 3.51
5066 11657 1.203001 TCTTGTTGGTTGTCCCCATCC 60.203 52.381 0.00 0.00 33.60 3.51
5067 11658 0.178947 TTGTTGGTTGTCCCCATCCC 60.179 55.000 0.00 0.00 33.60 3.85
5068 11659 1.677633 GTTGGTTGTCCCCATCCCG 60.678 63.158 0.00 0.00 33.60 5.14
5069 11660 1.848431 TTGGTTGTCCCCATCCCGA 60.848 57.895 0.00 0.00 33.60 5.14
5070 11661 1.847798 TTGGTTGTCCCCATCCCGAG 61.848 60.000 0.00 0.00 33.60 4.63
5071 11662 1.993391 GGTTGTCCCCATCCCGAGA 60.993 63.158 0.00 0.00 0.00 4.04
5072 11663 1.522569 GTTGTCCCCATCCCGAGAG 59.477 63.158 0.00 0.00 0.00 3.20
5073 11664 1.080354 TTGTCCCCATCCCGAGAGT 59.920 57.895 0.00 0.00 0.00 3.24
5074 11665 0.546747 TTGTCCCCATCCCGAGAGTT 60.547 55.000 0.00 0.00 0.00 3.01
5075 11666 1.264749 TGTCCCCATCCCGAGAGTTG 61.265 60.000 0.00 0.00 0.00 3.16
5076 11667 0.976073 GTCCCCATCCCGAGAGTTGA 60.976 60.000 0.00 0.00 0.00 3.18
5077 11668 0.687757 TCCCCATCCCGAGAGTTGAG 60.688 60.000 0.00 0.00 0.00 3.02
5078 11669 0.978146 CCCCATCCCGAGAGTTGAGT 60.978 60.000 0.00 0.00 0.00 3.41
5079 11670 0.905357 CCCATCCCGAGAGTTGAGTT 59.095 55.000 0.00 0.00 0.00 3.01
5080 11671 1.279271 CCCATCCCGAGAGTTGAGTTT 59.721 52.381 0.00 0.00 0.00 2.66
5081 11672 2.622436 CCATCCCGAGAGTTGAGTTTC 58.378 52.381 0.00 0.00 0.00 2.78
5082 11673 2.234908 CCATCCCGAGAGTTGAGTTTCT 59.765 50.000 0.00 0.00 0.00 2.52
5083 11674 3.307059 CCATCCCGAGAGTTGAGTTTCTT 60.307 47.826 0.00 0.00 0.00 2.52
5084 11675 3.662247 TCCCGAGAGTTGAGTTTCTTC 57.338 47.619 0.00 0.00 0.00 2.87
5085 11676 3.231818 TCCCGAGAGTTGAGTTTCTTCT 58.768 45.455 0.00 0.00 0.00 2.85
5086 11677 3.256136 TCCCGAGAGTTGAGTTTCTTCTC 59.744 47.826 0.00 0.00 35.28 2.87
5087 11678 3.580731 CCGAGAGTTGAGTTTCTTCTCC 58.419 50.000 0.00 0.00 33.93 3.71
5088 11679 3.238441 CGAGAGTTGAGTTTCTTCTCCG 58.762 50.000 0.00 0.00 33.93 4.63
5089 11680 3.580731 GAGAGTTGAGTTTCTTCTCCGG 58.419 50.000 0.00 0.00 33.93 5.14
5090 11681 2.300437 AGAGTTGAGTTTCTTCTCCGGG 59.700 50.000 0.00 0.00 33.93 5.73
5091 11682 1.348036 AGTTGAGTTTCTTCTCCGGGG 59.652 52.381 0.00 0.00 33.93 5.73
5092 11683 1.346722 GTTGAGTTTCTTCTCCGGGGA 59.653 52.381 0.00 0.00 33.93 4.81
5093 11684 1.267121 TGAGTTTCTTCTCCGGGGAG 58.733 55.000 3.09 8.48 43.21 4.30
5094 11685 0.108089 GAGTTTCTTCTCCGGGGAGC 60.108 60.000 3.09 0.00 41.71 4.70
5095 11686 1.078356 GTTTCTTCTCCGGGGAGCC 60.078 63.158 3.09 0.00 41.71 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.608055 TCTCGACAACGGGTACTGAA 58.392 50.000 0.00 0.00 41.23 3.02
5 6 1.471287 CATCTCGACAACGGGTACTGA 59.529 52.381 0.00 0.00 41.23 3.41
6 7 1.909376 CATCTCGACAACGGGTACTG 58.091 55.000 0.00 0.00 41.23 2.74
7 8 0.172803 GCATCTCGACAACGGGTACT 59.827 55.000 0.00 0.00 41.23 2.73
8 9 0.172803 AGCATCTCGACAACGGGTAC 59.827 55.000 0.00 0.00 41.23 3.34
9 10 0.172578 CAGCATCTCGACAACGGGTA 59.827 55.000 0.00 0.00 41.23 3.69
10 11 1.079819 CAGCATCTCGACAACGGGT 60.080 57.895 0.00 0.00 41.23 5.28
11 12 2.456119 GCAGCATCTCGACAACGGG 61.456 63.158 0.00 0.00 41.91 5.28
12 13 1.690283 CTGCAGCATCTCGACAACGG 61.690 60.000 0.00 0.00 40.21 4.44
13 14 1.706301 CTGCAGCATCTCGACAACG 59.294 57.895 0.00 0.00 41.26 4.10
14 15 1.018226 AGCTGCAGCATCTCGACAAC 61.018 55.000 38.24 6.46 45.16 3.32
15 16 0.321034 AAGCTGCAGCATCTCGACAA 60.321 50.000 38.24 0.00 45.16 3.18
16 17 0.321034 AAAGCTGCAGCATCTCGACA 60.321 50.000 38.24 0.00 45.16 4.35
17 18 0.096628 CAAAGCTGCAGCATCTCGAC 59.903 55.000 38.24 8.57 45.16 4.20
18 19 2.463592 CAAAGCTGCAGCATCTCGA 58.536 52.632 38.24 0.00 45.16 4.04
30 31 3.497884 AAGGTCAGCCCGCAAAGCT 62.498 57.895 0.00 0.00 42.70 3.74
31 32 2.982744 GAAGGTCAGCCCGCAAAGC 61.983 63.158 0.00 0.00 38.74 3.51
32 33 1.301677 GAGAAGGTCAGCCCGCAAAG 61.302 60.000 0.00 0.00 38.74 2.77
33 34 1.302511 GAGAAGGTCAGCCCGCAAA 60.303 57.895 0.00 0.00 38.74 3.68
34 35 1.768684 AAGAGAAGGTCAGCCCGCAA 61.769 55.000 0.00 0.00 38.74 4.85
35 36 2.172483 GAAGAGAAGGTCAGCCCGCA 62.172 60.000 0.00 0.00 38.74 5.69
36 37 1.448717 GAAGAGAAGGTCAGCCCGC 60.449 63.158 0.00 0.00 38.74 6.13
37 38 1.475403 TAGAAGAGAAGGTCAGCCCG 58.525 55.000 0.00 0.00 38.74 6.13
38 39 3.181459 GGATTAGAAGAGAAGGTCAGCCC 60.181 52.174 0.00 0.00 34.57 5.19
39 40 3.709141 AGGATTAGAAGAGAAGGTCAGCC 59.291 47.826 0.00 0.00 0.00 4.85
40 41 5.351948 AAGGATTAGAAGAGAAGGTCAGC 57.648 43.478 0.00 0.00 0.00 4.26
41 42 6.070538 TGGAAAGGATTAGAAGAGAAGGTCAG 60.071 42.308 0.00 0.00 0.00 3.51
42 43 5.785423 TGGAAAGGATTAGAAGAGAAGGTCA 59.215 40.000 0.00 0.00 0.00 4.02
43 44 6.301169 TGGAAAGGATTAGAAGAGAAGGTC 57.699 41.667 0.00 0.00 0.00 3.85
44 45 6.353429 CCATGGAAAGGATTAGAAGAGAAGGT 60.353 42.308 5.56 0.00 0.00 3.50
45 46 6.060788 CCATGGAAAGGATTAGAAGAGAAGG 58.939 44.000 5.56 0.00 0.00 3.46
46 47 6.657875 ACCATGGAAAGGATTAGAAGAGAAG 58.342 40.000 21.47 0.00 0.00 2.85
47 48 6.215431 TGACCATGGAAAGGATTAGAAGAGAA 59.785 38.462 21.47 0.00 0.00 2.87
48 49 5.726308 TGACCATGGAAAGGATTAGAAGAGA 59.274 40.000 21.47 0.00 0.00 3.10
49 50 5.994250 TGACCATGGAAAGGATTAGAAGAG 58.006 41.667 21.47 0.00 0.00 2.85
50 51 6.012508 AGTTGACCATGGAAAGGATTAGAAGA 60.013 38.462 21.47 0.00 0.00 2.87
51 52 6.183347 AGTTGACCATGGAAAGGATTAGAAG 58.817 40.000 21.47 0.00 0.00 2.85
52 53 6.139679 AGTTGACCATGGAAAGGATTAGAA 57.860 37.500 21.47 0.00 0.00 2.10
53 54 5.339200 GGAGTTGACCATGGAAAGGATTAGA 60.339 44.000 21.47 0.00 0.00 2.10
54 55 4.884164 GGAGTTGACCATGGAAAGGATTAG 59.116 45.833 21.47 0.00 0.00 1.73
55 56 4.540099 AGGAGTTGACCATGGAAAGGATTA 59.460 41.667 21.47 0.00 0.00 1.75
56 57 3.334881 AGGAGTTGACCATGGAAAGGATT 59.665 43.478 21.47 0.00 0.00 3.01
57 58 2.922283 AGGAGTTGACCATGGAAAGGAT 59.078 45.455 21.47 0.00 0.00 3.24
58 59 2.305927 GAGGAGTTGACCATGGAAAGGA 59.694 50.000 21.47 0.00 0.00 3.36
59 60 2.619074 GGAGGAGTTGACCATGGAAAGG 60.619 54.545 21.47 0.00 0.00 3.11
60 61 2.307098 AGGAGGAGTTGACCATGGAAAG 59.693 50.000 21.47 0.00 0.00 2.62
61 62 2.305927 GAGGAGGAGTTGACCATGGAAA 59.694 50.000 21.47 9.75 0.00 3.13
62 63 1.909302 GAGGAGGAGTTGACCATGGAA 59.091 52.381 21.47 2.77 0.00 3.53
63 64 1.573108 GAGGAGGAGTTGACCATGGA 58.427 55.000 21.47 0.00 0.00 3.41
64 65 0.543749 GGAGGAGGAGTTGACCATGG 59.456 60.000 11.19 11.19 0.00 3.66
65 66 0.543749 GGGAGGAGGAGTTGACCATG 59.456 60.000 0.00 0.00 0.00 3.66
66 67 0.978146 CGGGAGGAGGAGTTGACCAT 60.978 60.000 0.00 0.00 0.00 3.55
67 68 1.609501 CGGGAGGAGGAGTTGACCA 60.610 63.158 0.00 0.00 0.00 4.02
68 69 3.300013 CGGGAGGAGGAGTTGACC 58.700 66.667 0.00 0.00 0.00 4.02
80 81 0.837272 TAGAATTCAAGGCCCGGGAG 59.163 55.000 29.31 10.81 0.00 4.30
81 82 1.291109 TTAGAATTCAAGGCCCGGGA 58.709 50.000 29.31 0.71 0.00 5.14
82 83 2.137810 TTTAGAATTCAAGGCCCGGG 57.862 50.000 19.09 19.09 0.00 5.73
83 84 4.037565 GGTAATTTAGAATTCAAGGCCCGG 59.962 45.833 8.44 0.00 0.00 5.73
84 85 4.642885 TGGTAATTTAGAATTCAAGGCCCG 59.357 41.667 8.44 0.00 0.00 6.13
85 86 6.538945 TTGGTAATTTAGAATTCAAGGCCC 57.461 37.500 8.44 0.00 0.00 5.80
86 87 9.098355 GAAATTGGTAATTTAGAATTCAAGGCC 57.902 33.333 8.44 0.00 40.97 5.19
87 88 9.651913 TGAAATTGGTAATTTAGAATTCAAGGC 57.348 29.630 8.44 0.00 40.97 4.35
95 96 9.849166 GTTCGGAATGAAATTGGTAATTTAGAA 57.151 29.630 0.00 0.00 40.97 2.10
102 103 5.566469 AGGAGTTCGGAATGAAATTGGTAA 58.434 37.500 0.00 0.00 36.07 2.85
103 104 5.174037 AGGAGTTCGGAATGAAATTGGTA 57.826 39.130 0.00 0.00 36.07 3.25
146 147 4.489810 GCGATCTCTCCGATATGTGATTT 58.510 43.478 0.00 0.00 30.84 2.17
147 148 3.119316 GGCGATCTCTCCGATATGTGATT 60.119 47.826 0.00 0.00 30.84 2.57
148 149 2.425312 GGCGATCTCTCCGATATGTGAT 59.575 50.000 0.00 0.00 30.84 3.06
149 150 1.813178 GGCGATCTCTCCGATATGTGA 59.187 52.381 0.00 0.00 30.84 3.58
150 151 1.135257 GGGCGATCTCTCCGATATGTG 60.135 57.143 0.00 0.00 30.84 3.21
155 156 0.110678 TAGTGGGCGATCTCTCCGAT 59.889 55.000 0.00 0.00 34.25 4.18
191 192 0.465097 CTGCCTTCCTATGTGGGCTG 60.465 60.000 0.00 0.00 44.36 4.85
192 193 1.918253 CTGCCTTCCTATGTGGGCT 59.082 57.895 0.00 0.00 44.36 5.19
193 194 1.825622 GCTGCCTTCCTATGTGGGC 60.826 63.158 0.00 0.00 44.31 5.36
194 195 1.524621 CGCTGCCTTCCTATGTGGG 60.525 63.158 0.00 0.00 36.20 4.61
195 196 1.524621 CCGCTGCCTTCCTATGTGG 60.525 63.158 0.00 0.00 37.10 4.17
196 197 1.091771 CACCGCTGCCTTCCTATGTG 61.092 60.000 0.00 0.00 0.00 3.21
197 198 1.221840 CACCGCTGCCTTCCTATGT 59.778 57.895 0.00 0.00 0.00 2.29
198 199 0.531532 CTCACCGCTGCCTTCCTATG 60.532 60.000 0.00 0.00 0.00 2.23
199 200 0.687757 TCTCACCGCTGCCTTCCTAT 60.688 55.000 0.00 0.00 0.00 2.57
200 201 0.687757 ATCTCACCGCTGCCTTCCTA 60.688 55.000 0.00 0.00 0.00 2.94
201 202 1.557269 AATCTCACCGCTGCCTTCCT 61.557 55.000 0.00 0.00 0.00 3.36
202 203 0.678048 AAATCTCACCGCTGCCTTCC 60.678 55.000 0.00 0.00 0.00 3.46
203 204 1.135575 CAAAATCTCACCGCTGCCTTC 60.136 52.381 0.00 0.00 0.00 3.46
204 205 0.883833 CAAAATCTCACCGCTGCCTT 59.116 50.000 0.00 0.00 0.00 4.35
225 226 6.696441 GTTCTAGAACCTTCCTAAGATCGA 57.304 41.667 22.74 0.00 35.36 3.59
249 250 3.350219 TCTTCCAAAATCGGGGAGAAG 57.650 47.619 0.00 0.00 34.02 2.85
275 277 4.365899 AAAAACGGTGAACAAGACCTTC 57.634 40.909 0.00 0.00 0.00 3.46
353 355 5.719173 TGTGAATGTGACATATCTTCACGA 58.281 37.500 19.02 9.85 45.38 4.35
354 356 6.594284 ATGTGAATGTGACATATCTTCACG 57.406 37.500 19.02 0.00 45.38 4.35
359 361 9.842775 AAGAATGTATGTGAATGTGACATATCT 57.157 29.630 0.00 0.00 38.30 1.98
363 365 8.339344 TCAAAGAATGTATGTGAATGTGACAT 57.661 30.769 0.00 0.00 37.75 3.06
371 373 9.814899 AACACAAAATCAAAGAATGTATGTGAA 57.185 25.926 8.84 0.00 0.00 3.18
451 453 7.098477 TGCTCATGAATTAAAAATGTCCTTGG 58.902 34.615 0.00 0.00 0.00 3.61
556 560 8.690840 CCACGAATTAAGAAATGTTTTGAGTTC 58.309 33.333 0.00 0.00 0.00 3.01
563 567 9.541143 AAAATGTCCACGAATTAAGAAATGTTT 57.459 25.926 0.00 0.00 0.00 2.83
625 629 7.119992 TCGAATTGAAAGAATTCCACGGATTAA 59.880 33.333 0.65 0.00 34.12 1.40
626 630 6.596106 TCGAATTGAAAGAATTCCACGGATTA 59.404 34.615 0.65 0.00 34.12 1.75
628 632 4.941263 TCGAATTGAAAGAATTCCACGGAT 59.059 37.500 0.65 0.00 34.12 4.18
630 634 4.391830 TCTCGAATTGAAAGAATTCCACGG 59.608 41.667 0.65 0.00 34.12 4.94
633 637 6.875948 TGTTCTCGAATTGAAAGAATTCCA 57.124 33.333 0.65 0.00 34.12 3.53
634 638 8.748380 AAATGTTCTCGAATTGAAAGAATTCC 57.252 30.769 0.65 0.00 34.12 3.01
675 679 7.602517 AACATGTTCGGAAATTTGAAAAACA 57.397 28.000 4.92 1.71 0.00 2.83
676 680 8.888332 AAAACATGTTCGGAAATTTGAAAAAC 57.112 26.923 12.39 0.00 0.00 2.43
677 681 8.721478 TGAAAACATGTTCGGAAATTTGAAAAA 58.279 25.926 12.39 0.00 0.00 1.94
678 682 8.256611 TGAAAACATGTTCGGAAATTTGAAAA 57.743 26.923 12.39 0.00 0.00 2.29
679 683 7.834068 TGAAAACATGTTCGGAAATTTGAAA 57.166 28.000 12.39 0.00 0.00 2.69
680 684 7.834068 TTGAAAACATGTTCGGAAATTTGAA 57.166 28.000 12.39 0.00 0.00 2.69
681 685 8.430801 AATTGAAAACATGTTCGGAAATTTGA 57.569 26.923 12.39 0.00 0.00 2.69
682 686 8.945930 CAAATTGAAAACATGTTCGGAAATTTG 58.054 29.630 26.37 26.37 34.99 2.32
690 694 4.945292 TCGCAAATTGAAAACATGTTCG 57.055 36.364 12.39 7.81 0.00 3.95
757 780 6.074203 GGTGAACACCGTTCAAAAGTTTGAA 61.074 40.000 13.81 13.81 45.89 2.69
758 781 4.477780 GTGAACACCGTTCAAAAGTTTGA 58.522 39.130 10.91 2.32 44.78 2.69
759 782 3.610677 GGTGAACACCGTTCAAAAGTTTG 59.389 43.478 10.91 0.00 42.29 2.93
760 783 3.840468 GGTGAACACCGTTCAAAAGTTT 58.160 40.909 10.91 0.00 42.29 2.66
761 784 3.497297 GGTGAACACCGTTCAAAAGTT 57.503 42.857 10.91 0.00 42.29 2.66
896 920 2.716398 GCGACTTGCGTTCTTTTTCTT 58.284 42.857 0.00 0.00 43.41 2.52
953 979 1.003718 AAGCTCCAACCGCAGTACC 60.004 57.895 0.00 0.00 0.00 3.34
957 983 3.741476 GGCAAGCTCCAACCGCAG 61.741 66.667 0.00 0.00 0.00 5.18
967 993 0.471617 ATGGATCGCTAAGGCAAGCT 59.528 50.000 9.72 0.00 40.49 3.74
970 996 1.416030 TGCTATGGATCGCTAAGGCAA 59.584 47.619 0.00 0.00 38.60 4.52
973 999 1.719600 GCTGCTATGGATCGCTAAGG 58.280 55.000 0.00 0.00 0.00 2.69
974 1000 1.344458 CGCTGCTATGGATCGCTAAG 58.656 55.000 0.00 0.00 0.00 2.18
975 1001 0.038251 CCGCTGCTATGGATCGCTAA 60.038 55.000 0.00 0.00 0.00 3.09
976 1002 1.586541 CCGCTGCTATGGATCGCTA 59.413 57.895 0.00 0.00 0.00 4.26
1040 2565 4.047125 CGGGTGGGAAGCCATGGT 62.047 66.667 14.67 0.00 0.00 3.55
1097 2631 2.119029 GGGCGCTTATGGTGGTTCC 61.119 63.158 7.64 0.00 0.00 3.62
1537 3106 3.314307 TCGGGAGAGAGTATGTGGAAT 57.686 47.619 0.00 0.00 0.00 3.01
1587 3156 0.725686 CGAGTAGTCGTGACGGACAT 59.274 55.000 11.92 0.00 41.57 3.06
2030 4710 3.244814 GTCATAAGCTGCACTGAGAATCG 59.755 47.826 1.02 0.00 38.61 3.34
2031 4711 3.244814 CGTCATAAGCTGCACTGAGAATC 59.755 47.826 1.02 0.00 0.00 2.52
2198 4887 1.494721 GGCCAAATAGGGATGGACAGA 59.505 52.381 0.00 0.00 44.64 3.41
2299 5005 9.277783 GGAAACTTCATAGCATACAATCTACAT 57.722 33.333 0.00 0.00 0.00 2.29
2348 5054 3.826466 TCGATAGCATATCTTCACAGCG 58.174 45.455 0.00 0.00 0.00 5.18
2451 5187 4.455190 ACAAGTAGTTGAGGTCGTCTACTC 59.545 45.833 17.23 5.94 40.05 2.59
2722 5661 1.818642 CAAGAGGCTGTTTCCAGGAG 58.181 55.000 0.00 0.00 39.22 3.69
2764 5703 5.126061 TCCGACTACTTTGGGTCTTATGTAC 59.874 44.000 0.00 0.00 0.00 2.90
2769 5708 2.827921 GGTCCGACTACTTTGGGTCTTA 59.172 50.000 0.00 0.00 0.00 2.10
2782 5721 4.070552 GCTTCGCAGGGTCCGACT 62.071 66.667 0.00 0.00 34.01 4.18
2815 5779 2.042433 ACACTAAAAATAGGGCAGGCCA 59.958 45.455 16.94 1.34 37.98 5.36
2846 5810 5.249393 TCTTCTAATCTGCAGAAACCCTCTT 59.751 40.000 22.50 11.04 31.84 2.85
3000 7287 0.246635 CTCCGTCCCGAATTCAGTGT 59.753 55.000 6.22 0.00 0.00 3.55
3001 7288 0.460284 CCTCCGTCCCGAATTCAGTG 60.460 60.000 6.22 0.00 0.00 3.66
3002 7289 1.614241 CCCTCCGTCCCGAATTCAGT 61.614 60.000 6.22 0.00 0.00 3.41
3003 7290 1.144057 CCCTCCGTCCCGAATTCAG 59.856 63.158 6.22 0.00 0.00 3.02
3005 7292 1.328430 ACTCCCTCCGTCCCGAATTC 61.328 60.000 0.00 0.00 0.00 2.17
3304 8650 6.016192 ACACGATCTCTCACGGTTATCAATAT 60.016 38.462 0.00 0.00 0.00 1.28
3486 8868 1.413118 CTCCAACAAAACAGGCCCTT 58.587 50.000 0.00 0.00 0.00 3.95
3488 8870 2.049435 CCTCCAACAAAACAGGCCC 58.951 57.895 0.00 0.00 0.00 5.80
3623 9007 3.282885 CCATCCTTGCCTAAACTCCTTC 58.717 50.000 0.00 0.00 0.00 3.46
3635 9019 2.517875 ATCGGCAGCCATCCTTGC 60.518 61.111 13.30 0.00 0.00 4.01
3691 9159 4.097741 CCTGATATTCACGAATTTTGCCCA 59.902 41.667 0.00 0.00 32.50 5.36
3692 9160 4.610945 CCTGATATTCACGAATTTTGCCC 58.389 43.478 0.00 0.00 32.50 5.36
3769 9247 5.906113 TTTCAACAAAAGCTCACTTACCA 57.094 34.783 0.00 0.00 34.05 3.25
3844 9371 8.147704 TCATCACTGTTTCAACTAACATACAGA 58.852 33.333 0.00 0.00 37.39 3.41
3845 9372 8.223769 GTCATCACTGTTTCAACTAACATACAG 58.776 37.037 0.00 0.00 37.39 2.74
3908 9446 3.827008 AGACTCAGTCTCTTGCAAACA 57.173 42.857 0.00 0.00 38.71 2.83
3947 9485 7.615582 TTCTAGGTAATCTCTAAAACGACGA 57.384 36.000 0.00 0.00 0.00 4.20
3974 9518 3.008049 GTCCACCAGTTTGAGACCTGTAT 59.992 47.826 0.00 0.00 0.00 2.29
3979 9523 0.765510 AGGTCCACCAGTTTGAGACC 59.234 55.000 0.00 0.00 46.04 3.85
4035 9624 6.903419 TCTCTCGCACATATATACACTTCTG 58.097 40.000 0.00 0.00 0.00 3.02
4071 9661 7.758528 AGAATGGTCACACGACTTTACTTATAC 59.241 37.037 0.00 0.00 42.21 1.47
4083 9673 2.754472 CAACAGAGAATGGTCACACGA 58.246 47.619 0.00 0.00 0.00 4.35
4112 9702 7.533289 AAGCTAAAAAGGTGCCATTTTAGTA 57.467 32.000 26.04 6.54 43.37 1.82
4125 9803 4.515191 GGCAAAAGGGAAAAGCTAAAAAGG 59.485 41.667 0.00 0.00 0.00 3.11
4145 9832 0.534877 ACACGACAAGCATCTTGGCA 60.535 50.000 12.32 0.00 35.83 4.92
4160 9847 2.094258 AGCGCAGTTATGATTTCACACG 59.906 45.455 11.47 0.00 0.00 4.49
4209 9899 9.353999 CAACCAAAATAAGCCTGACTATTTAAC 57.646 33.333 0.00 0.00 0.00 2.01
4223 9913 3.615496 GCTCATGCTGCAACCAAAATAAG 59.385 43.478 6.36 0.00 36.03 1.73
4343 10045 8.359060 AGCATAAAATGTAAAACAAAAAGCGA 57.641 26.923 0.00 0.00 0.00 4.93
4345 10047 9.528847 GCTAGCATAAAATGTAAAACAAAAAGC 57.471 29.630 10.63 0.00 0.00 3.51
4349 10051 9.405587 GTGAGCTAGCATAAAATGTAAAACAAA 57.594 29.630 18.83 0.00 0.00 2.83
4350 10052 8.572185 TGTGAGCTAGCATAAAATGTAAAACAA 58.428 29.630 18.83 0.00 0.00 2.83
4389 10092 7.820872 GCCTGACCACTTAAAATAGTAGTACAA 59.179 37.037 2.52 0.00 0.00 2.41
4391 10094 7.491696 CAGCCTGACCACTTAAAATAGTAGTAC 59.508 40.741 0.00 0.00 0.00 2.73
4407 10169 0.770499 TTTGATGGACAGCCTGACCA 59.230 50.000 17.96 17.96 45.41 4.02
4408 10170 2.134789 ATTTGATGGACAGCCTGACC 57.865 50.000 6.25 6.25 32.81 4.02
4410 10172 5.774690 AGTTTAAATTTGATGGACAGCCTGA 59.225 36.000 0.00 0.00 34.31 3.86
4435 10197 8.229811 CAGATACGAGTTTCATTCAACATTTGA 58.770 33.333 0.00 0.00 38.04 2.69
4496 10258 2.930455 GCAAGCGTGCCAATAACCATTT 60.930 45.455 14.16 0.00 45.68 2.32
4523 10285 0.179062 CTGTCTACTGCTCCCCATGC 60.179 60.000 0.00 0.00 0.00 4.06
4527 10289 1.205893 CAGAACTGTCTACTGCTCCCC 59.794 57.143 0.00 0.00 30.85 4.81
4601 10415 4.104696 TCGTCGTGCAAATAGAAGATGA 57.895 40.909 0.00 0.00 0.00 2.92
4657 11248 5.796424 AGCCATGTCCATTTTCCATTATC 57.204 39.130 0.00 0.00 0.00 1.75
4660 11251 5.271598 TCTTAGCCATGTCCATTTTCCATT 58.728 37.500 0.00 0.00 0.00 3.16
4696 11287 1.745489 CCTGGGTGCGCTAAAGGTC 60.745 63.158 9.73 0.00 0.00 3.85
4706 11297 0.323360 TAAGGCAACATCCTGGGTGC 60.323 55.000 6.92 5.52 36.38 5.01
4712 11303 9.791801 ATAAAAACAAAAATAAGGCAACATCCT 57.208 25.926 0.00 0.00 38.31 3.24
4857 11448 9.109393 GCCTTGTCTGTATACAATGATTTAGAA 57.891 33.333 7.06 0.00 38.61 2.10
4858 11449 8.486210 AGCCTTGTCTGTATACAATGATTTAGA 58.514 33.333 7.06 0.00 38.61 2.10
4859 11450 8.668510 AGCCTTGTCTGTATACAATGATTTAG 57.331 34.615 7.06 1.86 38.61 1.85
4860 11451 9.764363 CTAGCCTTGTCTGTATACAATGATTTA 57.236 33.333 7.06 0.00 38.61 1.40
4861 11452 8.486210 TCTAGCCTTGTCTGTATACAATGATTT 58.514 33.333 7.06 0.00 38.61 2.17
4862 11453 8.023021 TCTAGCCTTGTCTGTATACAATGATT 57.977 34.615 7.06 0.00 38.61 2.57
4863 11454 7.603180 TCTAGCCTTGTCTGTATACAATGAT 57.397 36.000 7.06 0.00 38.61 2.45
4864 11455 7.418337 TTCTAGCCTTGTCTGTATACAATGA 57.582 36.000 7.06 0.00 38.61 2.57
4865 11456 8.492673 TTTTCTAGCCTTGTCTGTATACAATG 57.507 34.615 7.06 0.00 38.61 2.82
4871 11462 9.167311 CAGTTTATTTTCTAGCCTTGTCTGTAT 57.833 33.333 0.00 0.00 0.00 2.29
4872 11463 7.606456 CCAGTTTATTTTCTAGCCTTGTCTGTA 59.394 37.037 0.00 0.00 0.00 2.74
4873 11464 6.431234 CCAGTTTATTTTCTAGCCTTGTCTGT 59.569 38.462 0.00 0.00 0.00 3.41
4874 11465 6.655003 TCCAGTTTATTTTCTAGCCTTGTCTG 59.345 38.462 0.00 0.00 0.00 3.51
4875 11466 6.779860 TCCAGTTTATTTTCTAGCCTTGTCT 58.220 36.000 0.00 0.00 0.00 3.41
4876 11467 7.306213 GTTCCAGTTTATTTTCTAGCCTTGTC 58.694 38.462 0.00 0.00 0.00 3.18
4877 11468 6.072673 CGTTCCAGTTTATTTTCTAGCCTTGT 60.073 38.462 0.00 0.00 0.00 3.16
4878 11469 6.148811 TCGTTCCAGTTTATTTTCTAGCCTTG 59.851 38.462 0.00 0.00 0.00 3.61
4879 11470 6.235664 TCGTTCCAGTTTATTTTCTAGCCTT 58.764 36.000 0.00 0.00 0.00 4.35
4880 11471 5.801380 TCGTTCCAGTTTATTTTCTAGCCT 58.199 37.500 0.00 0.00 0.00 4.58
4881 11472 6.315393 TGATCGTTCCAGTTTATTTTCTAGCC 59.685 38.462 0.00 0.00 0.00 3.93
4882 11473 7.303634 TGATCGTTCCAGTTTATTTTCTAGC 57.696 36.000 0.00 0.00 0.00 3.42
4892 11483 8.792633 TCAATTTCTATTTGATCGTTCCAGTTT 58.207 29.630 0.00 0.00 0.00 2.66
4893 11484 8.335532 TCAATTTCTATTTGATCGTTCCAGTT 57.664 30.769 0.00 0.00 0.00 3.16
4894 11485 7.921786 TCAATTTCTATTTGATCGTTCCAGT 57.078 32.000 0.00 0.00 0.00 4.00
4895 11486 8.668353 TCTTCAATTTCTATTTGATCGTTCCAG 58.332 33.333 0.00 0.00 33.37 3.86
4896 11487 8.450964 GTCTTCAATTTCTATTTGATCGTTCCA 58.549 33.333 0.00 0.00 33.37 3.53
4897 11488 8.450964 TGTCTTCAATTTCTATTTGATCGTTCC 58.549 33.333 0.00 0.00 33.37 3.62
4898 11489 9.825972 TTGTCTTCAATTTCTATTTGATCGTTC 57.174 29.630 0.00 0.00 33.37 3.95
4910 11501 8.892723 TGAACGCATATATTGTCTTCAATTTCT 58.107 29.630 0.00 0.00 43.12 2.52
4911 11502 8.947940 GTGAACGCATATATTGTCTTCAATTTC 58.052 33.333 0.00 0.00 43.12 2.17
4912 11503 8.458052 TGTGAACGCATATATTGTCTTCAATTT 58.542 29.630 0.00 0.00 43.12 1.82
4913 11504 7.984391 TGTGAACGCATATATTGTCTTCAATT 58.016 30.769 0.00 0.00 43.12 2.32
4914 11505 7.254898 CCTGTGAACGCATATATTGTCTTCAAT 60.255 37.037 0.00 0.00 45.00 2.57
4915 11506 6.037062 CCTGTGAACGCATATATTGTCTTCAA 59.963 38.462 0.00 0.00 37.98 2.69
4916 11507 5.523552 CCTGTGAACGCATATATTGTCTTCA 59.476 40.000 0.00 0.00 0.00 3.02
4917 11508 5.753438 TCCTGTGAACGCATATATTGTCTTC 59.247 40.000 0.00 0.00 0.00 2.87
4918 11509 5.670485 TCCTGTGAACGCATATATTGTCTT 58.330 37.500 0.00 0.00 0.00 3.01
4919 11510 5.276461 TCCTGTGAACGCATATATTGTCT 57.724 39.130 0.00 0.00 0.00 3.41
4920 11511 5.615544 GCATCCTGTGAACGCATATATTGTC 60.616 44.000 0.00 0.00 0.00 3.18
4921 11512 4.214119 GCATCCTGTGAACGCATATATTGT 59.786 41.667 0.00 0.00 0.00 2.71
4922 11513 4.213906 TGCATCCTGTGAACGCATATATTG 59.786 41.667 0.00 0.00 30.55 1.90
4923 11514 4.214119 GTGCATCCTGTGAACGCATATATT 59.786 41.667 0.00 0.00 35.98 1.28
4924 11515 3.748048 GTGCATCCTGTGAACGCATATAT 59.252 43.478 0.00 0.00 35.98 0.86
4925 11516 3.130633 GTGCATCCTGTGAACGCATATA 58.869 45.455 0.00 0.00 35.98 0.86
4926 11517 1.942657 GTGCATCCTGTGAACGCATAT 59.057 47.619 0.00 0.00 35.98 1.78
4927 11518 1.368641 GTGCATCCTGTGAACGCATA 58.631 50.000 0.00 0.00 35.98 3.14
4931 11522 0.884259 TGTGGTGCATCCTGTGAACG 60.884 55.000 0.00 0.00 37.23 3.95
4958 11549 0.584396 TTTACCGTTGTGCTGAAGCG 59.416 50.000 0.00 0.00 45.83 4.68
4974 11565 1.141254 TCAGCCAACGGTTCAGGTTTA 59.859 47.619 0.00 0.00 0.00 2.01
4986 11577 2.825205 AGCATTTGTTGTTCAGCCAAC 58.175 42.857 0.00 0.00 43.95 3.77
5011 11602 9.546428 CCTTTGATGTTCACATATACATACAGA 57.454 33.333 0.00 0.00 36.57 3.41
5012 11603 9.330063 ACCTTTGATGTTCACATATACATACAG 57.670 33.333 0.00 0.00 36.57 2.74
5013 11604 9.679661 AACCTTTGATGTTCACATATACATACA 57.320 29.630 0.00 0.00 36.57 2.29
5016 11607 9.905713 AGTAACCTTTGATGTTCACATATACAT 57.094 29.630 0.00 0.00 36.57 2.29
5017 11608 9.378551 GAGTAACCTTTGATGTTCACATATACA 57.621 33.333 0.00 0.00 36.57 2.29
5018 11609 9.601217 AGAGTAACCTTTGATGTTCACATATAC 57.399 33.333 0.00 0.00 36.57 1.47
5019 11610 9.817809 GAGAGTAACCTTTGATGTTCACATATA 57.182 33.333 0.00 0.00 36.57 0.86
5020 11611 8.543774 AGAGAGTAACCTTTGATGTTCACATAT 58.456 33.333 0.00 0.00 36.57 1.78
5021 11612 7.907389 AGAGAGTAACCTTTGATGTTCACATA 58.093 34.615 0.00 0.00 36.57 2.29
5022 11613 6.773638 AGAGAGTAACCTTTGATGTTCACAT 58.226 36.000 0.00 0.00 39.70 3.21
5023 11614 6.042093 AGAGAGAGTAACCTTTGATGTTCACA 59.958 38.462 0.00 0.00 0.00 3.58
5024 11615 6.459923 AGAGAGAGTAACCTTTGATGTTCAC 58.540 40.000 0.00 0.00 0.00 3.18
5025 11616 6.672266 AGAGAGAGTAACCTTTGATGTTCA 57.328 37.500 0.00 0.00 0.00 3.18
5026 11617 6.931840 ACAAGAGAGAGTAACCTTTGATGTTC 59.068 38.462 0.00 0.00 0.00 3.18
5027 11618 6.831976 ACAAGAGAGAGTAACCTTTGATGTT 58.168 36.000 0.00 0.00 0.00 2.71
5028 11619 6.426646 ACAAGAGAGAGTAACCTTTGATGT 57.573 37.500 0.00 0.00 0.00 3.06
5029 11620 6.148480 CCAACAAGAGAGAGTAACCTTTGATG 59.852 42.308 0.00 0.00 0.00 3.07
5030 11621 6.183361 ACCAACAAGAGAGAGTAACCTTTGAT 60.183 38.462 0.00 0.00 0.00 2.57
5031 11622 5.130477 ACCAACAAGAGAGAGTAACCTTTGA 59.870 40.000 0.00 0.00 0.00 2.69
5032 11623 5.368989 ACCAACAAGAGAGAGTAACCTTTG 58.631 41.667 0.00 0.00 0.00 2.77
5033 11624 5.632034 ACCAACAAGAGAGAGTAACCTTT 57.368 39.130 0.00 0.00 0.00 3.11
5034 11625 5.104485 ACAACCAACAAGAGAGAGTAACCTT 60.104 40.000 0.00 0.00 0.00 3.50
5035 11626 4.409247 ACAACCAACAAGAGAGAGTAACCT 59.591 41.667 0.00 0.00 0.00 3.50
5036 11627 4.704965 ACAACCAACAAGAGAGAGTAACC 58.295 43.478 0.00 0.00 0.00 2.85
5037 11628 4.750598 GGACAACCAACAAGAGAGAGTAAC 59.249 45.833 0.00 0.00 35.97 2.50
5038 11629 4.202326 GGGACAACCAACAAGAGAGAGTAA 60.202 45.833 0.00 0.00 39.85 2.24
5039 11630 3.323979 GGGACAACCAACAAGAGAGAGTA 59.676 47.826 0.00 0.00 39.85 2.59
5040 11631 2.104963 GGGACAACCAACAAGAGAGAGT 59.895 50.000 0.00 0.00 39.85 3.24
5041 11632 2.551071 GGGGACAACCAACAAGAGAGAG 60.551 54.545 0.00 0.00 42.91 3.20
5042 11633 1.420138 GGGGACAACCAACAAGAGAGA 59.580 52.381 0.00 0.00 42.91 3.10
5043 11634 1.142870 TGGGGACAACCAACAAGAGAG 59.857 52.381 0.00 0.00 42.91 3.20
5044 11635 1.217916 TGGGGACAACCAACAAGAGA 58.782 50.000 0.00 0.00 42.91 3.10
5045 11636 3.819245 TGGGGACAACCAACAAGAG 57.181 52.632 0.00 0.00 42.91 2.85
5057 11648 0.976073 TCAACTCTCGGGATGGGGAC 60.976 60.000 0.00 0.00 0.00 4.46
5058 11649 0.687757 CTCAACTCTCGGGATGGGGA 60.688 60.000 0.00 0.00 0.00 4.81
5059 11650 0.978146 ACTCAACTCTCGGGATGGGG 60.978 60.000 0.00 0.00 0.00 4.96
5060 11651 0.905357 AACTCAACTCTCGGGATGGG 59.095 55.000 0.00 0.00 0.00 4.00
5061 11652 2.234908 AGAAACTCAACTCTCGGGATGG 59.765 50.000 0.00 0.00 0.00 3.51
5062 11653 3.601443 AGAAACTCAACTCTCGGGATG 57.399 47.619 0.00 0.00 0.00 3.51
5063 11654 3.835395 AGAAGAAACTCAACTCTCGGGAT 59.165 43.478 0.00 0.00 0.00 3.85
5064 11655 3.231818 AGAAGAAACTCAACTCTCGGGA 58.768 45.455 0.00 0.00 0.00 5.14
5065 11656 3.580731 GAGAAGAAACTCAACTCTCGGG 58.419 50.000 0.00 0.00 36.95 5.14
5066 11657 3.580731 GGAGAAGAAACTCAACTCTCGG 58.419 50.000 0.00 0.00 38.51 4.63
5067 11658 3.238441 CGGAGAAGAAACTCAACTCTCG 58.762 50.000 0.00 0.00 38.51 4.04
5068 11659 3.580731 CCGGAGAAGAAACTCAACTCTC 58.419 50.000 0.00 0.00 38.51 3.20
5069 11660 2.300437 CCCGGAGAAGAAACTCAACTCT 59.700 50.000 0.73 0.00 38.51 3.24
5070 11661 2.613223 CCCCGGAGAAGAAACTCAACTC 60.613 54.545 0.73 0.00 38.51 3.01
5071 11662 1.348036 CCCCGGAGAAGAAACTCAACT 59.652 52.381 0.73 0.00 38.51 3.16
5072 11663 1.346722 TCCCCGGAGAAGAAACTCAAC 59.653 52.381 0.73 0.00 38.51 3.18
5073 11664 1.623811 CTCCCCGGAGAAGAAACTCAA 59.376 52.381 0.73 0.00 44.53 3.02
5074 11665 1.267121 CTCCCCGGAGAAGAAACTCA 58.733 55.000 0.73 0.00 44.53 3.41
5075 11666 0.108089 GCTCCCCGGAGAAGAAACTC 60.108 60.000 15.14 0.00 44.53 3.01
5076 11667 1.554583 GGCTCCCCGGAGAAGAAACT 61.555 60.000 15.14 0.00 44.53 2.66
5077 11668 1.078356 GGCTCCCCGGAGAAGAAAC 60.078 63.158 15.14 0.00 44.53 2.78
5078 11669 3.400188 GGCTCCCCGGAGAAGAAA 58.600 61.111 15.14 0.00 44.53 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.