Multiple sequence alignment - TraesCS2D01G472900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G472900 | chr2D | 100.000 | 3071 | 0 | 0 | 1 | 3071 | 576459612 | 576462682 | 0.000000e+00 | 5672.0 |
1 | TraesCS2D01G472900 | chr2D | 83.618 | 1697 | 177 | 52 | 810 | 2426 | 576294094 | 576295769 | 0.000000e+00 | 1500.0 |
2 | TraesCS2D01G472900 | chr2D | 85.282 | 1454 | 150 | 32 | 894 | 2311 | 576580349 | 576581774 | 0.000000e+00 | 1441.0 |
3 | TraesCS2D01G472900 | chr2D | 91.228 | 570 | 40 | 9 | 1 | 565 | 113479163 | 113478599 | 0.000000e+00 | 767.0 |
4 | TraesCS2D01G472900 | chr2D | 90.559 | 572 | 47 | 5 | 1 | 565 | 9671927 | 9672498 | 0.000000e+00 | 750.0 |
5 | TraesCS2D01G472900 | chr2D | 90.385 | 572 | 43 | 11 | 1 | 565 | 489573648 | 489573082 | 0.000000e+00 | 741.0 |
6 | TraesCS2D01G472900 | chr2A | 86.711 | 2235 | 206 | 47 | 894 | 3063 | 714343973 | 714346181 | 0.000000e+00 | 2398.0 |
7 | TraesCS2D01G472900 | chr2A | 85.226 | 1435 | 152 | 41 | 795 | 2189 | 714528778 | 714530192 | 0.000000e+00 | 1421.0 |
8 | TraesCS2D01G472900 | chr2A | 95.238 | 63 | 2 | 1 | 722 | 783 | 15641217 | 15641279 | 7.010000e-17 | 99.0 |
9 | TraesCS2D01G472900 | chr2A | 95.238 | 63 | 2 | 1 | 722 | 783 | 15641404 | 15641466 | 7.010000e-17 | 99.0 |
10 | TraesCS2D01G472900 | chrUn | 84.308 | 1300 | 164 | 24 | 908 | 2178 | 328242089 | 328243377 | 0.000000e+00 | 1234.0 |
11 | TraesCS2D01G472900 | chr2B | 84.308 | 1300 | 164 | 24 | 908 | 2178 | 692489398 | 692490686 | 0.000000e+00 | 1234.0 |
12 | TraesCS2D01G472900 | chr2B | 85.194 | 797 | 93 | 16 | 936 | 1712 | 692615165 | 692615956 | 0.000000e+00 | 795.0 |
13 | TraesCS2D01G472900 | chr2B | 85.251 | 617 | 45 | 13 | 1704 | 2311 | 692616681 | 692617260 | 7.330000e-166 | 593.0 |
14 | TraesCS2D01G472900 | chr2B | 84.483 | 116 | 18 | 0 | 1077 | 1192 | 693041812 | 693041697 | 6.960000e-22 | 115.0 |
15 | TraesCS2D01G472900 | chr2B | 95.745 | 47 | 2 | 0 | 2262 | 2308 | 692524915 | 692524869 | 3.280000e-10 | 76.8 |
16 | TraesCS2D01G472900 | chr5A | 89.713 | 661 | 22 | 14 | 2448 | 3071 | 704253551 | 704254202 | 0.000000e+00 | 802.0 |
17 | TraesCS2D01G472900 | chr5A | 88.740 | 524 | 14 | 13 | 2584 | 3071 | 704202020 | 704202534 | 1.580000e-167 | 599.0 |
18 | TraesCS2D01G472900 | chr5A | 93.000 | 400 | 13 | 8 | 2680 | 3071 | 704093509 | 704093901 | 1.240000e-158 | 569.0 |
19 | TraesCS2D01G472900 | chr5A | 92.982 | 399 | 14 | 9 | 2680 | 3071 | 704332954 | 704333345 | 1.240000e-158 | 569.0 |
20 | TraesCS2D01G472900 | chr5A | 92.481 | 399 | 16 | 9 | 2680 | 3071 | 704123859 | 704124250 | 2.670000e-155 | 558.0 |
21 | TraesCS2D01G472900 | chr5A | 92.727 | 275 | 12 | 4 | 2448 | 2717 | 704123595 | 704123866 | 1.030000e-104 | 390.0 |
22 | TraesCS2D01G472900 | chr5A | 92.000 | 275 | 13 | 4 | 2448 | 2717 | 704093246 | 704093516 | 8.040000e-101 | 377.0 |
23 | TraesCS2D01G472900 | chr5A | 94.737 | 114 | 5 | 1 | 2448 | 2561 | 704201854 | 704201966 | 3.150000e-40 | 176.0 |
24 | TraesCS2D01G472900 | chr5A | 92.708 | 96 | 4 | 2 | 2622 | 2717 | 704332869 | 704332961 | 5.340000e-28 | 135.0 |
25 | TraesCS2D01G472900 | chr3D | 91.388 | 569 | 42 | 7 | 1 | 565 | 475866744 | 475867309 | 0.000000e+00 | 773.0 |
26 | TraesCS2D01G472900 | chr3D | 83.846 | 130 | 20 | 1 | 595 | 723 | 611570995 | 611570866 | 4.160000e-24 | 122.0 |
27 | TraesCS2D01G472900 | chr1D | 91.373 | 568 | 42 | 7 | 1 | 565 | 58617028 | 58617591 | 0.000000e+00 | 771.0 |
28 | TraesCS2D01G472900 | chr1D | 90.493 | 568 | 44 | 8 | 1 | 565 | 452250016 | 452250576 | 0.000000e+00 | 741.0 |
29 | TraesCS2D01G472900 | chr1D | 97.727 | 44 | 1 | 0 | 678 | 721 | 467315175 | 467315218 | 3.280000e-10 | 76.8 |
30 | TraesCS2D01G472900 | chr5D | 91.243 | 571 | 36 | 11 | 1 | 565 | 454030073 | 454029511 | 0.000000e+00 | 765.0 |
31 | TraesCS2D01G472900 | chr5D | 91.068 | 571 | 38 | 12 | 1 | 565 | 544788241 | 544788804 | 0.000000e+00 | 760.0 |
32 | TraesCS2D01G472900 | chr5D | 96.610 | 59 | 2 | 0 | 722 | 780 | 320306819 | 320306761 | 7.010000e-17 | 99.0 |
33 | TraesCS2D01G472900 | chr7D | 90.893 | 571 | 42 | 8 | 1 | 565 | 14555133 | 14555699 | 0.000000e+00 | 758.0 |
34 | TraesCS2D01G472900 | chr5B | 84.034 | 238 | 20 | 9 | 2452 | 2687 | 480240318 | 480240097 | 2.400000e-51 | 213.0 |
35 | TraesCS2D01G472900 | chr5B | 92.537 | 67 | 5 | 0 | 2609 | 2675 | 429033486 | 429033552 | 2.520000e-16 | 97.1 |
36 | TraesCS2D01G472900 | chr5B | 97.727 | 44 | 1 | 0 | 678 | 721 | 72094102 | 72094059 | 3.280000e-10 | 76.8 |
37 | TraesCS2D01G472900 | chr6D | 84.615 | 130 | 19 | 1 | 595 | 723 | 32071804 | 32071933 | 8.940000e-26 | 128.0 |
38 | TraesCS2D01G472900 | chr6D | 97.727 | 44 | 1 | 0 | 678 | 721 | 156432665 | 156432622 | 3.280000e-10 | 76.8 |
39 | TraesCS2D01G472900 | chr4B | 86.916 | 107 | 14 | 0 | 618 | 724 | 604538839 | 604538945 | 1.500000e-23 | 121.0 |
40 | TraesCS2D01G472900 | chr4B | 93.548 | 62 | 4 | 0 | 662 | 723 | 665211976 | 665211915 | 3.260000e-15 | 93.5 |
41 | TraesCS2D01G472900 | chr6B | 89.091 | 55 | 6 | 0 | 667 | 721 | 10175576 | 10175522 | 5.490000e-08 | 69.4 |
42 | TraesCS2D01G472900 | chr1B | 89.091 | 55 | 6 | 0 | 667 | 721 | 487417204 | 487417150 | 5.490000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G472900 | chr2D | 576459612 | 576462682 | 3070 | False | 5672.0 | 5672 | 100.0000 | 1 | 3071 | 1 | chr2D.!!$F3 | 3070 |
1 | TraesCS2D01G472900 | chr2D | 576294094 | 576295769 | 1675 | False | 1500.0 | 1500 | 83.6180 | 810 | 2426 | 1 | chr2D.!!$F2 | 1616 |
2 | TraesCS2D01G472900 | chr2D | 576580349 | 576581774 | 1425 | False | 1441.0 | 1441 | 85.2820 | 894 | 2311 | 1 | chr2D.!!$F4 | 1417 |
3 | TraesCS2D01G472900 | chr2D | 113478599 | 113479163 | 564 | True | 767.0 | 767 | 91.2280 | 1 | 565 | 1 | chr2D.!!$R1 | 564 |
4 | TraesCS2D01G472900 | chr2D | 9671927 | 9672498 | 571 | False | 750.0 | 750 | 90.5590 | 1 | 565 | 1 | chr2D.!!$F1 | 564 |
5 | TraesCS2D01G472900 | chr2D | 489573082 | 489573648 | 566 | True | 741.0 | 741 | 90.3850 | 1 | 565 | 1 | chr2D.!!$R2 | 564 |
6 | TraesCS2D01G472900 | chr2A | 714343973 | 714346181 | 2208 | False | 2398.0 | 2398 | 86.7110 | 894 | 3063 | 1 | chr2A.!!$F1 | 2169 |
7 | TraesCS2D01G472900 | chr2A | 714528778 | 714530192 | 1414 | False | 1421.0 | 1421 | 85.2260 | 795 | 2189 | 1 | chr2A.!!$F2 | 1394 |
8 | TraesCS2D01G472900 | chrUn | 328242089 | 328243377 | 1288 | False | 1234.0 | 1234 | 84.3080 | 908 | 2178 | 1 | chrUn.!!$F1 | 1270 |
9 | TraesCS2D01G472900 | chr2B | 692489398 | 692490686 | 1288 | False | 1234.0 | 1234 | 84.3080 | 908 | 2178 | 1 | chr2B.!!$F1 | 1270 |
10 | TraesCS2D01G472900 | chr2B | 692615165 | 692617260 | 2095 | False | 694.0 | 795 | 85.2225 | 936 | 2311 | 2 | chr2B.!!$F2 | 1375 |
11 | TraesCS2D01G472900 | chr5A | 704253551 | 704254202 | 651 | False | 802.0 | 802 | 89.7130 | 2448 | 3071 | 1 | chr5A.!!$F1 | 623 |
12 | TraesCS2D01G472900 | chr5A | 704123595 | 704124250 | 655 | False | 474.0 | 558 | 92.6040 | 2448 | 3071 | 2 | chr5A.!!$F3 | 623 |
13 | TraesCS2D01G472900 | chr5A | 704093246 | 704093901 | 655 | False | 473.0 | 569 | 92.5000 | 2448 | 3071 | 2 | chr5A.!!$F2 | 623 |
14 | TraesCS2D01G472900 | chr5A | 704201854 | 704202534 | 680 | False | 387.5 | 599 | 91.7385 | 2448 | 3071 | 2 | chr5A.!!$F4 | 623 |
15 | TraesCS2D01G472900 | chr3D | 475866744 | 475867309 | 565 | False | 773.0 | 773 | 91.3880 | 1 | 565 | 1 | chr3D.!!$F1 | 564 |
16 | TraesCS2D01G472900 | chr1D | 58617028 | 58617591 | 563 | False | 771.0 | 771 | 91.3730 | 1 | 565 | 1 | chr1D.!!$F1 | 564 |
17 | TraesCS2D01G472900 | chr1D | 452250016 | 452250576 | 560 | False | 741.0 | 741 | 90.4930 | 1 | 565 | 1 | chr1D.!!$F2 | 564 |
18 | TraesCS2D01G472900 | chr5D | 454029511 | 454030073 | 562 | True | 765.0 | 765 | 91.2430 | 1 | 565 | 1 | chr5D.!!$R2 | 564 |
19 | TraesCS2D01G472900 | chr5D | 544788241 | 544788804 | 563 | False | 760.0 | 760 | 91.0680 | 1 | 565 | 1 | chr5D.!!$F1 | 564 |
20 | TraesCS2D01G472900 | chr7D | 14555133 | 14555699 | 566 | False | 758.0 | 758 | 90.8930 | 1 | 565 | 1 | chr7D.!!$F1 | 564 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
618 | 641 | 0.039527 | CAGCCCCGTGCAAGTTAAAC | 60.040 | 55.0 | 0.00 | 0.0 | 44.83 | 2.01 | F |
670 | 693 | 0.106569 | AATTGATCGGGGCATCTGCA | 60.107 | 50.0 | 4.33 | 0.0 | 44.36 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1970 | 2821 | 0.867746 | GCAACGTGTCATGAAGCTCA | 59.132 | 50.000 | 0.00 | 0.0 | 0.00 | 4.26 | R |
2252 | 3135 | 1.635487 | CACCCAAAGGATCCAAGGAGA | 59.365 | 52.381 | 15.82 | 0.0 | 36.73 | 3.71 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 3.277211 | TTTCGGGAGAGTCACGGCG | 62.277 | 63.158 | 4.80 | 4.80 | 44.75 | 6.46 |
43 | 44 | 4.162690 | GGCGGTGCCTCTCGGAAT | 62.163 | 66.667 | 0.00 | 0.00 | 46.69 | 3.01 |
259 | 275 | 2.125147 | CGGGCATGCCTCTTTCGA | 60.125 | 61.111 | 34.70 | 0.00 | 36.10 | 3.71 |
294 | 312 | 1.894756 | TGCTCCCGGTTCGGTTTTG | 60.895 | 57.895 | 0.00 | 0.00 | 46.80 | 2.44 |
346 | 366 | 6.323739 | AGTTTGTCAAAACCTATCAACATGGT | 59.676 | 34.615 | 0.00 | 0.00 | 45.75 | 3.55 |
425 | 448 | 2.481449 | GGACGCACGGTTTGAGAGATAT | 60.481 | 50.000 | 0.00 | 0.00 | 0.00 | 1.63 |
481 | 504 | 0.106918 | AACTCCAGGGTTGCGACAAA | 60.107 | 50.000 | 6.39 | 0.00 | 0.00 | 2.83 |
508 | 531 | 1.576451 | CTGCATGTGCGCCACTTGTA | 61.576 | 55.000 | 4.18 | 10.17 | 45.83 | 2.41 |
512 | 535 | 1.300971 | ATGTGCGCCACTTGTAGCAG | 61.301 | 55.000 | 4.18 | 0.00 | 40.53 | 4.24 |
565 | 588 | 7.122948 | ACGAGTACTCCTCAATTAGTGATTTCT | 59.877 | 37.037 | 17.23 | 0.00 | 40.48 | 2.52 |
566 | 589 | 7.646130 | CGAGTACTCCTCAATTAGTGATTTCTC | 59.354 | 40.741 | 17.23 | 0.00 | 40.48 | 2.87 |
567 | 590 | 8.367660 | AGTACTCCTCAATTAGTGATTTCTCA | 57.632 | 34.615 | 0.00 | 0.00 | 35.07 | 3.27 |
568 | 591 | 8.816894 | AGTACTCCTCAATTAGTGATTTCTCAA | 58.183 | 33.333 | 0.00 | 0.00 | 35.07 | 3.02 |
569 | 592 | 9.436957 | GTACTCCTCAATTAGTGATTTCTCAAA | 57.563 | 33.333 | 0.00 | 0.00 | 35.07 | 2.69 |
570 | 593 | 8.924511 | ACTCCTCAATTAGTGATTTCTCAAAA | 57.075 | 30.769 | 0.00 | 0.00 | 35.07 | 2.44 |
571 | 594 | 8.787852 | ACTCCTCAATTAGTGATTTCTCAAAAC | 58.212 | 33.333 | 0.00 | 0.00 | 35.07 | 2.43 |
572 | 595 | 8.690203 | TCCTCAATTAGTGATTTCTCAAAACA | 57.310 | 30.769 | 0.00 | 0.00 | 35.07 | 2.83 |
573 | 596 | 9.130661 | TCCTCAATTAGTGATTTCTCAAAACAA | 57.869 | 29.630 | 0.00 | 0.00 | 35.07 | 2.83 |
574 | 597 | 9.748708 | CCTCAATTAGTGATTTCTCAAAACAAA | 57.251 | 29.630 | 0.00 | 0.00 | 35.07 | 2.83 |
576 | 599 | 9.748708 | TCAATTAGTGATTTCTCAAAACAAAGG | 57.251 | 29.630 | 0.00 | 0.00 | 31.85 | 3.11 |
577 | 600 | 9.748708 | CAATTAGTGATTTCTCAAAACAAAGGA | 57.251 | 29.630 | 0.00 | 0.00 | 31.85 | 3.36 |
578 | 601 | 9.750125 | AATTAGTGATTTCTCAAAACAAAGGAC | 57.250 | 29.630 | 0.00 | 0.00 | 31.85 | 3.85 |
579 | 602 | 6.773976 | AGTGATTTCTCAAAACAAAGGACA | 57.226 | 33.333 | 0.00 | 0.00 | 31.85 | 4.02 |
580 | 603 | 7.169158 | AGTGATTTCTCAAAACAAAGGACAA | 57.831 | 32.000 | 0.00 | 0.00 | 31.85 | 3.18 |
581 | 604 | 7.610865 | AGTGATTTCTCAAAACAAAGGACAAA | 58.389 | 30.769 | 0.00 | 0.00 | 31.85 | 2.83 |
582 | 605 | 8.093927 | AGTGATTTCTCAAAACAAAGGACAAAA | 58.906 | 29.630 | 0.00 | 0.00 | 31.85 | 2.44 |
583 | 606 | 8.716909 | GTGATTTCTCAAAACAAAGGACAAAAA | 58.283 | 29.630 | 0.00 | 0.00 | 31.85 | 1.94 |
584 | 607 | 8.716909 | TGATTTCTCAAAACAAAGGACAAAAAC | 58.283 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
585 | 608 | 8.614469 | ATTTCTCAAAACAAAGGACAAAAACA | 57.386 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
586 | 609 | 7.650834 | TTCTCAAAACAAAGGACAAAAACAG | 57.349 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
587 | 610 | 5.637387 | TCTCAAAACAAAGGACAAAAACAGC | 59.363 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
588 | 611 | 5.546526 | TCAAAACAAAGGACAAAAACAGCT | 58.453 | 33.333 | 0.00 | 0.00 | 0.00 | 4.24 |
589 | 612 | 5.637387 | TCAAAACAAAGGACAAAAACAGCTC | 59.363 | 36.000 | 0.00 | 0.00 | 0.00 | 4.09 |
590 | 613 | 4.799564 | AACAAAGGACAAAAACAGCTCA | 57.200 | 36.364 | 0.00 | 0.00 | 0.00 | 4.26 |
591 | 614 | 5.343307 | AACAAAGGACAAAAACAGCTCAT | 57.657 | 34.783 | 0.00 | 0.00 | 0.00 | 2.90 |
592 | 615 | 4.936891 | ACAAAGGACAAAAACAGCTCATC | 58.063 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
593 | 616 | 4.646492 | ACAAAGGACAAAAACAGCTCATCT | 59.354 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
594 | 617 | 5.827797 | ACAAAGGACAAAAACAGCTCATCTA | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
595 | 618 | 6.321181 | ACAAAGGACAAAAACAGCTCATCTAA | 59.679 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
596 | 619 | 6.959639 | AAGGACAAAAACAGCTCATCTAAA | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
597 | 620 | 6.959639 | AGGACAAAAACAGCTCATCTAAAA | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
598 | 621 | 6.974965 | AGGACAAAAACAGCTCATCTAAAAG | 58.025 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
599 | 622 | 5.631096 | GGACAAAAACAGCTCATCTAAAAGC | 59.369 | 40.000 | 0.00 | 0.00 | 38.84 | 3.51 |
600 | 623 | 6.147864 | ACAAAAACAGCTCATCTAAAAGCA | 57.852 | 33.333 | 0.00 | 0.00 | 41.06 | 3.91 |
601 | 624 | 6.211515 | ACAAAAACAGCTCATCTAAAAGCAG | 58.788 | 36.000 | 0.00 | 0.00 | 41.06 | 4.24 |
602 | 625 | 4.431661 | AAACAGCTCATCTAAAAGCAGC | 57.568 | 40.909 | 0.00 | 0.00 | 41.06 | 5.25 |
603 | 626 | 2.363683 | ACAGCTCATCTAAAAGCAGCC | 58.636 | 47.619 | 0.00 | 0.00 | 41.06 | 4.85 |
604 | 627 | 1.674962 | CAGCTCATCTAAAAGCAGCCC | 59.325 | 52.381 | 0.00 | 0.00 | 41.06 | 5.19 |
605 | 628 | 1.028130 | GCTCATCTAAAAGCAGCCCC | 58.972 | 55.000 | 0.00 | 0.00 | 38.42 | 5.80 |
606 | 629 | 1.303309 | CTCATCTAAAAGCAGCCCCG | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
607 | 630 | 0.618458 | TCATCTAAAAGCAGCCCCGT | 59.382 | 50.000 | 0.00 | 0.00 | 0.00 | 5.28 |
608 | 631 | 0.734889 | CATCTAAAAGCAGCCCCGTG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
609 | 632 | 1.032114 | ATCTAAAAGCAGCCCCGTGC | 61.032 | 55.000 | 0.00 | 0.00 | 44.35 | 5.34 |
610 | 633 | 1.971167 | CTAAAAGCAGCCCCGTGCA | 60.971 | 57.895 | 0.00 | 0.00 | 46.60 | 4.57 |
611 | 634 | 1.523154 | CTAAAAGCAGCCCCGTGCAA | 61.523 | 55.000 | 0.00 | 0.00 | 46.60 | 4.08 |
612 | 635 | 1.523154 | TAAAAGCAGCCCCGTGCAAG | 61.523 | 55.000 | 0.00 | 0.00 | 46.60 | 4.01 |
613 | 636 | 4.586235 | AAGCAGCCCCGTGCAAGT | 62.586 | 61.111 | 0.00 | 0.00 | 46.60 | 3.16 |
614 | 637 | 4.586235 | AGCAGCCCCGTGCAAGTT | 62.586 | 61.111 | 0.00 | 0.00 | 46.60 | 2.66 |
615 | 638 | 2.671619 | GCAGCCCCGTGCAAGTTA | 60.672 | 61.111 | 0.00 | 0.00 | 43.41 | 2.24 |
616 | 639 | 2.265182 | GCAGCCCCGTGCAAGTTAA | 61.265 | 57.895 | 0.00 | 0.00 | 43.41 | 2.01 |
617 | 640 | 1.801309 | GCAGCCCCGTGCAAGTTAAA | 61.801 | 55.000 | 0.00 | 0.00 | 43.41 | 1.52 |
618 | 641 | 0.039527 | CAGCCCCGTGCAAGTTAAAC | 60.040 | 55.000 | 0.00 | 0.00 | 44.83 | 2.01 |
619 | 642 | 0.466555 | AGCCCCGTGCAAGTTAAACA | 60.467 | 50.000 | 0.00 | 0.00 | 44.83 | 2.83 |
620 | 643 | 0.386113 | GCCCCGTGCAAGTTAAACAA | 59.614 | 50.000 | 0.00 | 0.00 | 40.77 | 2.83 |
621 | 644 | 1.601914 | GCCCCGTGCAAGTTAAACAAG | 60.602 | 52.381 | 0.00 | 0.00 | 40.77 | 3.16 |
622 | 645 | 1.601914 | CCCCGTGCAAGTTAAACAAGC | 60.602 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
623 | 646 | 1.601914 | CCCGTGCAAGTTAAACAAGCC | 60.602 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
624 | 647 | 1.601914 | CCGTGCAAGTTAAACAAGCCC | 60.602 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
625 | 648 | 1.066303 | CGTGCAAGTTAAACAAGCCCA | 59.934 | 47.619 | 0.00 | 0.00 | 0.00 | 5.36 |
626 | 649 | 2.480416 | CGTGCAAGTTAAACAAGCCCAA | 60.480 | 45.455 | 0.00 | 0.00 | 0.00 | 4.12 |
627 | 650 | 3.526534 | GTGCAAGTTAAACAAGCCCAAA | 58.473 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
628 | 651 | 3.555547 | GTGCAAGTTAAACAAGCCCAAAG | 59.444 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
629 | 652 | 3.449018 | TGCAAGTTAAACAAGCCCAAAGA | 59.551 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
630 | 653 | 4.081420 | TGCAAGTTAAACAAGCCCAAAGAA | 60.081 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
631 | 654 | 4.873259 | GCAAGTTAAACAAGCCCAAAGAAA | 59.127 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
632 | 655 | 5.352846 | GCAAGTTAAACAAGCCCAAAGAAAA | 59.647 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
633 | 656 | 6.128145 | GCAAGTTAAACAAGCCCAAAGAAAAA | 60.128 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
634 | 657 | 6.978343 | AGTTAAACAAGCCCAAAGAAAAAC | 57.022 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
635 | 658 | 6.468543 | AGTTAAACAAGCCCAAAGAAAAACA | 58.531 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
636 | 659 | 6.937465 | AGTTAAACAAGCCCAAAGAAAAACAA | 59.063 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
637 | 660 | 7.445707 | AGTTAAACAAGCCCAAAGAAAAACAAA | 59.554 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
638 | 661 | 6.832520 | AAACAAGCCCAAAGAAAAACAAAT | 57.167 | 29.167 | 0.00 | 0.00 | 0.00 | 2.32 |
639 | 662 | 5.816449 | ACAAGCCCAAAGAAAAACAAATG | 57.184 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
640 | 663 | 5.495640 | ACAAGCCCAAAGAAAAACAAATGA | 58.504 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
641 | 664 | 5.942826 | ACAAGCCCAAAGAAAAACAAATGAA | 59.057 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
642 | 665 | 6.602803 | ACAAGCCCAAAGAAAAACAAATGAAT | 59.397 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
643 | 666 | 6.622833 | AGCCCAAAGAAAAACAAATGAATG | 57.377 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
644 | 667 | 6.355747 | AGCCCAAAGAAAAACAAATGAATGA | 58.644 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
645 | 668 | 6.260714 | AGCCCAAAGAAAAACAAATGAATGAC | 59.739 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
646 | 669 | 6.038050 | GCCCAAAGAAAAACAAATGAATGACA | 59.962 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
647 | 670 | 7.414984 | GCCCAAAGAAAAACAAATGAATGACAA | 60.415 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
648 | 671 | 8.124199 | CCCAAAGAAAAACAAATGAATGACAAG | 58.876 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
649 | 672 | 8.124199 | CCAAAGAAAAACAAATGAATGACAAGG | 58.876 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
650 | 673 | 8.881743 | CAAAGAAAAACAAATGAATGACAAGGA | 58.118 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
651 | 674 | 9.447157 | AAAGAAAAACAAATGAATGACAAGGAA | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 3.36 |
652 | 675 | 9.447157 | AAGAAAAACAAATGAATGACAAGGAAA | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 3.13 |
653 | 676 | 9.617523 | AGAAAAACAAATGAATGACAAGGAAAT | 57.382 | 25.926 | 0.00 | 0.00 | 0.00 | 2.17 |
656 | 679 | 8.961294 | AAACAAATGAATGACAAGGAAATTGA | 57.039 | 26.923 | 0.00 | 0.00 | 41.83 | 2.57 |
657 | 680 | 9.563748 | AAACAAATGAATGACAAGGAAATTGAT | 57.436 | 25.926 | 0.00 | 0.00 | 41.83 | 2.57 |
658 | 681 | 8.767478 | ACAAATGAATGACAAGGAAATTGATC | 57.233 | 30.769 | 0.00 | 0.00 | 41.83 | 2.92 |
659 | 682 | 7.543172 | ACAAATGAATGACAAGGAAATTGATCG | 59.457 | 33.333 | 0.00 | 0.00 | 41.83 | 3.69 |
660 | 683 | 5.565592 | TGAATGACAAGGAAATTGATCGG | 57.434 | 39.130 | 0.00 | 0.00 | 41.83 | 4.18 |
661 | 684 | 4.398988 | TGAATGACAAGGAAATTGATCGGG | 59.601 | 41.667 | 0.00 | 0.00 | 41.83 | 5.14 |
662 | 685 | 2.722094 | TGACAAGGAAATTGATCGGGG | 58.278 | 47.619 | 0.00 | 0.00 | 41.83 | 5.73 |
663 | 686 | 1.405463 | GACAAGGAAATTGATCGGGGC | 59.595 | 52.381 | 0.00 | 0.00 | 41.83 | 5.80 |
664 | 687 | 1.272425 | ACAAGGAAATTGATCGGGGCA | 60.272 | 47.619 | 0.00 | 0.00 | 41.83 | 5.36 |
665 | 688 | 2.034124 | CAAGGAAATTGATCGGGGCAT | 58.966 | 47.619 | 0.00 | 0.00 | 41.83 | 4.40 |
666 | 689 | 1.986882 | AGGAAATTGATCGGGGCATC | 58.013 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
667 | 690 | 1.496429 | AGGAAATTGATCGGGGCATCT | 59.504 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
668 | 691 | 1.610522 | GGAAATTGATCGGGGCATCTG | 59.389 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
669 | 692 | 1.000938 | GAAATTGATCGGGGCATCTGC | 60.001 | 52.381 | 0.00 | 0.00 | 41.14 | 4.26 |
670 | 693 | 0.106569 | AATTGATCGGGGCATCTGCA | 60.107 | 50.000 | 4.33 | 0.00 | 44.36 | 4.41 |
671 | 694 | 0.536687 | ATTGATCGGGGCATCTGCAG | 60.537 | 55.000 | 7.63 | 7.63 | 44.36 | 4.41 |
672 | 695 | 2.281345 | GATCGGGGCATCTGCAGG | 60.281 | 66.667 | 15.13 | 0.00 | 44.36 | 4.85 |
673 | 696 | 2.769621 | ATCGGGGCATCTGCAGGA | 60.770 | 61.111 | 15.13 | 0.96 | 44.36 | 3.86 |
674 | 697 | 2.121992 | GATCGGGGCATCTGCAGGAT | 62.122 | 60.000 | 15.13 | 6.48 | 44.36 | 3.24 |
703 | 726 | 3.963622 | GTCGACTTAGACTTCGCGA | 57.036 | 52.632 | 3.71 | 3.71 | 38.09 | 5.87 |
704 | 727 | 2.238245 | GTCGACTTAGACTTCGCGAA | 57.762 | 50.000 | 22.01 | 22.01 | 38.09 | 4.70 |
705 | 728 | 2.167591 | GTCGACTTAGACTTCGCGAAG | 58.832 | 52.381 | 39.55 | 39.55 | 43.79 | 3.79 |
716 | 739 | 3.955887 | CTTCGCGAAGTCTAAGTCAAC | 57.044 | 47.619 | 34.97 | 0.00 | 33.87 | 3.18 |
717 | 740 | 3.566523 | CTTCGCGAAGTCTAAGTCAACT | 58.433 | 45.455 | 34.97 | 0.00 | 33.87 | 3.16 |
718 | 741 | 2.929960 | TCGCGAAGTCTAAGTCAACTG | 58.070 | 47.619 | 6.20 | 0.00 | 0.00 | 3.16 |
719 | 742 | 2.551032 | TCGCGAAGTCTAAGTCAACTGA | 59.449 | 45.455 | 6.20 | 0.00 | 0.00 | 3.41 |
720 | 743 | 2.911723 | CGCGAAGTCTAAGTCAACTGAG | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
721 | 744 | 3.609644 | CGCGAAGTCTAAGTCAACTGAGT | 60.610 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
722 | 745 | 4.299978 | GCGAAGTCTAAGTCAACTGAGTT | 58.700 | 43.478 | 5.20 | 5.20 | 40.50 | 3.01 |
723 | 746 | 5.458891 | GCGAAGTCTAAGTCAACTGAGTTA | 58.541 | 41.667 | 0.00 | 6.78 | 38.53 | 2.24 |
741 | 764 | 8.932791 | ACTGAGTTAGTTGTATGGAAAATTACG | 58.067 | 33.333 | 0.00 | 0.00 | 35.67 | 3.18 |
742 | 765 | 8.836268 | TGAGTTAGTTGTATGGAAAATTACGT | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 3.57 |
743 | 766 | 9.926158 | TGAGTTAGTTGTATGGAAAATTACGTA | 57.074 | 29.630 | 0.00 | 0.00 | 0.00 | 3.57 |
745 | 768 | 9.374838 | AGTTAGTTGTATGGAAAATTACGTAGG | 57.625 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
746 | 769 | 6.673154 | AGTTGTATGGAAAATTACGTAGGC | 57.327 | 37.500 | 0.00 | 0.00 | 0.00 | 3.93 |
747 | 770 | 5.587443 | AGTTGTATGGAAAATTACGTAGGCC | 59.413 | 40.000 | 0.00 | 0.00 | 0.00 | 5.19 |
748 | 771 | 5.362105 | TGTATGGAAAATTACGTAGGCCT | 57.638 | 39.130 | 11.78 | 11.78 | 0.00 | 5.19 |
749 | 772 | 5.747342 | TGTATGGAAAATTACGTAGGCCTT | 58.253 | 37.500 | 12.58 | 0.00 | 0.00 | 4.35 |
750 | 773 | 5.818857 | TGTATGGAAAATTACGTAGGCCTTC | 59.181 | 40.000 | 12.58 | 4.38 | 0.00 | 3.46 |
751 | 774 | 3.264104 | TGGAAAATTACGTAGGCCTTCG | 58.736 | 45.455 | 27.86 | 27.86 | 0.00 | 3.79 |
752 | 775 | 3.264947 | GGAAAATTACGTAGGCCTTCGT | 58.735 | 45.455 | 34.92 | 34.92 | 42.82 | 3.85 |
753 | 776 | 4.081752 | TGGAAAATTACGTAGGCCTTCGTA | 60.082 | 41.667 | 32.91 | 32.91 | 40.70 | 3.43 |
754 | 777 | 4.505556 | GGAAAATTACGTAGGCCTTCGTAG | 59.494 | 45.833 | 33.74 | 15.45 | 42.09 | 3.51 |
755 | 778 | 3.722728 | AATTACGTAGGCCTTCGTAGG | 57.277 | 47.619 | 33.74 | 16.23 | 42.09 | 3.18 |
771 | 794 | 4.485024 | CGTAGGCACTATGTAGGTGTAG | 57.515 | 50.000 | 0.00 | 0.00 | 45.60 | 2.74 |
772 | 795 | 3.252701 | CGTAGGCACTATGTAGGTGTAGG | 59.747 | 52.174 | 0.00 | 0.00 | 45.60 | 3.18 |
773 | 796 | 3.682592 | AGGCACTATGTAGGTGTAGGA | 57.317 | 47.619 | 0.00 | 0.00 | 36.02 | 2.94 |
774 | 797 | 4.200447 | AGGCACTATGTAGGTGTAGGAT | 57.800 | 45.455 | 0.00 | 0.00 | 36.02 | 3.24 |
775 | 798 | 4.557705 | AGGCACTATGTAGGTGTAGGATT | 58.442 | 43.478 | 0.00 | 0.00 | 36.02 | 3.01 |
776 | 799 | 5.712752 | AGGCACTATGTAGGTGTAGGATTA | 58.287 | 41.667 | 0.00 | 0.00 | 36.02 | 1.75 |
777 | 800 | 6.323737 | AGGCACTATGTAGGTGTAGGATTAT | 58.676 | 40.000 | 0.00 | 0.00 | 36.02 | 1.28 |
778 | 801 | 6.437793 | AGGCACTATGTAGGTGTAGGATTATC | 59.562 | 42.308 | 0.00 | 0.00 | 36.02 | 1.75 |
779 | 802 | 6.323266 | GCACTATGTAGGTGTAGGATTATCG | 58.677 | 44.000 | 0.00 | 0.00 | 37.07 | 2.92 |
780 | 803 | 6.072064 | GCACTATGTAGGTGTAGGATTATCGT | 60.072 | 42.308 | 0.00 | 0.00 | 37.07 | 3.73 |
781 | 804 | 7.523380 | GCACTATGTAGGTGTAGGATTATCGTT | 60.523 | 40.741 | 0.00 | 0.00 | 37.07 | 3.85 |
782 | 805 | 8.358148 | CACTATGTAGGTGTAGGATTATCGTTT | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
783 | 806 | 8.358148 | ACTATGTAGGTGTAGGATTATCGTTTG | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 2.93 |
784 | 807 | 6.534475 | TGTAGGTGTAGGATTATCGTTTGT | 57.466 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
785 | 808 | 6.938507 | TGTAGGTGTAGGATTATCGTTTGTT | 58.061 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
786 | 809 | 7.388437 | TGTAGGTGTAGGATTATCGTTTGTTT | 58.612 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
787 | 810 | 7.879160 | TGTAGGTGTAGGATTATCGTTTGTTTT | 59.121 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
788 | 811 | 7.373778 | AGGTGTAGGATTATCGTTTGTTTTC | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
789 | 812 | 6.373495 | AGGTGTAGGATTATCGTTTGTTTTCC | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
790 | 813 | 6.149807 | GGTGTAGGATTATCGTTTGTTTTCCA | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
791 | 814 | 7.148137 | GGTGTAGGATTATCGTTTGTTTTCCAT | 60.148 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
792 | 815 | 7.696453 | GTGTAGGATTATCGTTTGTTTTCCATG | 59.304 | 37.037 | 0.00 | 0.00 | 0.00 | 3.66 |
793 | 816 | 6.207691 | AGGATTATCGTTTGTTTTCCATGG | 57.792 | 37.500 | 4.97 | 4.97 | 0.00 | 3.66 |
804 | 827 | 3.574396 | TGTTTTCCATGGCCGATAACAAA | 59.426 | 39.130 | 6.96 | 0.00 | 31.17 | 2.83 |
805 | 828 | 3.859411 | TTTCCATGGCCGATAACAAAC | 57.141 | 42.857 | 6.96 | 0.00 | 0.00 | 2.93 |
806 | 829 | 2.799126 | TCCATGGCCGATAACAAACT | 57.201 | 45.000 | 6.96 | 0.00 | 0.00 | 2.66 |
844 | 868 | 2.154798 | CTCTCCAAAGTCGGACGCCA | 62.155 | 60.000 | 1.89 | 0.00 | 0.00 | 5.69 |
846 | 881 | 1.079405 | TCCAAAGTCGGACGCCATC | 60.079 | 57.895 | 1.89 | 0.00 | 0.00 | 3.51 |
847 | 882 | 2.452813 | CCAAAGTCGGACGCCATCG | 61.453 | 63.158 | 1.89 | 0.00 | 42.43 | 3.84 |
855 | 890 | 1.490693 | CGGACGCCATCGAAATCCTG | 61.491 | 60.000 | 0.00 | 0.00 | 39.41 | 3.86 |
878 | 913 | 3.290776 | CCATCGGGACTCGGATTTC | 57.709 | 57.895 | 0.00 | 0.00 | 39.77 | 2.17 |
879 | 914 | 0.249911 | CCATCGGGACTCGGATTTCC | 60.250 | 60.000 | 0.00 | 0.00 | 39.77 | 3.13 |
883 | 918 | 2.308185 | GGGACTCGGATTTCCCCTT | 58.692 | 57.895 | 12.05 | 0.00 | 45.40 | 3.95 |
885 | 920 | 0.909623 | GGACTCGGATTTCCCCTTCA | 59.090 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
886 | 921 | 1.490910 | GGACTCGGATTTCCCCTTCAT | 59.509 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
888 | 923 | 2.170607 | GACTCGGATTTCCCCTTCATCA | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
890 | 925 | 3.181450 | ACTCGGATTTCCCCTTCATCATC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
892 | 927 | 2.158623 | CGGATTTCCCCTTCATCATCCA | 60.159 | 50.000 | 0.00 | 0.00 | 31.24 | 3.41 |
905 | 959 | 5.482163 | TCATCATCCAATATAAGACGCCA | 57.518 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
942 | 1001 | 2.414161 | GCTGGTGCAAATTCGGTTCTAC | 60.414 | 50.000 | 0.00 | 0.00 | 39.41 | 2.59 |
989 | 1058 | 2.261671 | CCCCGTCTGTTCTCCACG | 59.738 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1049 | 1118 | 2.096657 | AGATCACGTCGAGATGTGTCAG | 59.903 | 50.000 | 20.73 | 0.84 | 45.84 | 3.51 |
1051 | 1120 | 0.521735 | CACGTCGAGATGTGTCAGGA | 59.478 | 55.000 | 15.26 | 0.00 | 41.97 | 3.86 |
1067 | 1136 | 1.758514 | GGATCTGGGAGCAGACCGA | 60.759 | 63.158 | 0.00 | 0.00 | 33.58 | 4.69 |
1074 | 1143 | 2.383527 | GGAGCAGACCGAAACGCTG | 61.384 | 63.158 | 0.00 | 0.00 | 34.12 | 5.18 |
1090 | 1159 | 2.270923 | CGCTGAATTTCGAGATGACCA | 58.729 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
1091 | 1160 | 2.283617 | CGCTGAATTTCGAGATGACCAG | 59.716 | 50.000 | 8.13 | 8.13 | 0.00 | 4.00 |
1104 | 1173 | 0.764890 | TGACCAGTTACCTGCAGCTT | 59.235 | 50.000 | 8.66 | 0.00 | 37.38 | 3.74 |
1105 | 1174 | 1.974957 | TGACCAGTTACCTGCAGCTTA | 59.025 | 47.619 | 8.66 | 0.00 | 37.38 | 3.09 |
1107 | 1176 | 3.003480 | GACCAGTTACCTGCAGCTTAAG | 58.997 | 50.000 | 8.66 | 0.00 | 37.38 | 1.85 |
1132 | 1202 | 2.604174 | GGTGTCGGCCAGTTCGTTG | 61.604 | 63.158 | 2.24 | 0.00 | 0.00 | 4.10 |
1142 | 1212 | 4.736631 | GTTCGTTGCTTCGCCCGC | 62.737 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
1164 | 1234 | 1.812686 | TTGAAGTCGGCGGCTACAGT | 61.813 | 55.000 | 17.05 | 0.00 | 0.00 | 3.55 |
1168 | 1238 | 4.077184 | TCGGCGGCTACAGTTGGG | 62.077 | 66.667 | 7.21 | 0.00 | 0.00 | 4.12 |
1170 | 1240 | 2.436115 | GGCGGCTACAGTTGGGAC | 60.436 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
1175 | 1245 | 1.134401 | CGGCTACAGTTGGGACATCAT | 60.134 | 52.381 | 0.00 | 0.00 | 39.30 | 2.45 |
1176 | 1246 | 2.292267 | GGCTACAGTTGGGACATCATG | 58.708 | 52.381 | 0.00 | 0.00 | 39.30 | 3.07 |
1187 | 1257 | 1.202651 | GGACATCATGTTCTACCCGGG | 60.203 | 57.143 | 22.25 | 22.25 | 0.00 | 5.73 |
1188 | 1258 | 1.485066 | GACATCATGTTCTACCCGGGT | 59.515 | 52.381 | 32.66 | 32.66 | 0.00 | 5.28 |
1211 | 1281 | 3.062466 | CGAGGAGGACTGTGGCGA | 61.062 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1234 | 1304 | 1.518792 | GCCTCGGCGTTTCTCTACC | 60.519 | 63.158 | 6.85 | 0.00 | 0.00 | 3.18 |
1237 | 1307 | 0.522915 | CTCGGCGTTTCTCTACCGTC | 60.523 | 60.000 | 6.85 | 0.00 | 45.76 | 4.79 |
1243 | 1313 | 1.335597 | CGTTTCTCTACCGTCACAGCA | 60.336 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1245 | 1315 | 2.724977 | TTCTCTACCGTCACAGCAAG | 57.275 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1289 | 1362 | 2.806856 | GCTTCACGCTGAGCATCCG | 61.807 | 63.158 | 4.88 | 0.00 | 35.14 | 4.18 |
1334 | 1407 | 1.970917 | GCCAACTTCGATGCGGTGAG | 61.971 | 60.000 | 8.57 | 0.00 | 0.00 | 3.51 |
1475 | 1560 | 2.506438 | CGACGAGTCGCCCTTTCC | 60.506 | 66.667 | 13.59 | 0.00 | 46.50 | 3.13 |
1501 | 1598 | 2.113774 | CCAGCCAACTGTCCAGCA | 59.886 | 61.111 | 0.00 | 0.00 | 42.81 | 4.41 |
1503 | 1600 | 1.656441 | CAGCCAACTGTCCAGCAAC | 59.344 | 57.895 | 0.00 | 0.00 | 39.22 | 4.17 |
1508 | 1605 | 0.532862 | CAACTGTCCAGCAACCTCGT | 60.533 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1510 | 1607 | 1.669115 | CTGTCCAGCAACCTCGTGG | 60.669 | 63.158 | 0.99 | 0.99 | 39.83 | 4.94 |
1620 | 1717 | 1.301716 | GCCGGTGTTCAGAGCTCAA | 60.302 | 57.895 | 17.77 | 0.00 | 0.00 | 3.02 |
1708 | 1808 | 1.069204 | TCCAGATGATGCTTCGCTACC | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
1839 | 2687 | 2.095869 | GTGTGAAGATGAGCTGTGCAAG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
1874 | 2722 | 0.804364 | ACCGTTATGAGCACGTACGA | 59.196 | 50.000 | 24.41 | 0.00 | 35.81 | 3.43 |
1966 | 2817 | 2.835431 | CCGCCATCCTCGAGACCT | 60.835 | 66.667 | 15.71 | 0.00 | 0.00 | 3.85 |
1968 | 2819 | 1.655329 | CGCCATCCTCGAGACCTAC | 59.345 | 63.158 | 15.71 | 0.00 | 0.00 | 3.18 |
1970 | 2821 | 1.102222 | GCCATCCTCGAGACCTACGT | 61.102 | 60.000 | 15.71 | 0.00 | 0.00 | 3.57 |
1996 | 2853 | 1.003839 | ATGACACGTTGCCGACCAT | 60.004 | 52.632 | 0.00 | 0.00 | 37.88 | 3.55 |
2093 | 2959 | 5.987347 | AGATGTTGGTTTTCTTTTCTGCATG | 59.013 | 36.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2094 | 2960 | 3.870419 | TGTTGGTTTTCTTTTCTGCATGC | 59.130 | 39.130 | 11.82 | 11.82 | 0.00 | 4.06 |
2095 | 2961 | 3.815856 | TGGTTTTCTTTTCTGCATGCA | 57.184 | 38.095 | 21.29 | 21.29 | 0.00 | 3.96 |
2096 | 2962 | 3.456280 | TGGTTTTCTTTTCTGCATGCAC | 58.544 | 40.909 | 18.46 | 2.35 | 0.00 | 4.57 |
2139 | 3015 | 2.559998 | AAAGTGCCTCAACGTTTGTG | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2157 | 3033 | 2.548057 | TGTGAGCCGAAAATGTCTGAAC | 59.452 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2198 | 3075 | 9.010029 | ACCTTGGTATTTGTTTACAAGATACTG | 57.990 | 33.333 | 17.39 | 12.21 | 37.15 | 2.74 |
2231 | 3114 | 9.087424 | GGTTTATGTTTGCCTTCTTATGAAATC | 57.913 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2241 | 3124 | 7.137426 | GCCTTCTTATGAAATCTGCATACAAG | 58.863 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2243 | 3126 | 6.624352 | TCTTATGAAATCTGCATACAAGCC | 57.376 | 37.500 | 0.00 | 0.00 | 0.00 | 4.35 |
2252 | 3135 | 3.196039 | TCTGCATACAAGCCATTGCATTT | 59.804 | 39.130 | 0.00 | 0.00 | 43.51 | 2.32 |
2426 | 3313 | 3.434637 | CACACAACAAAAGAACCCGAAG | 58.565 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
2437 | 3324 | 2.236146 | AGAACCCGAAGATGTACATGCA | 59.764 | 45.455 | 14.43 | 0.00 | 0.00 | 3.96 |
2535 | 3422 | 1.582502 | CTAAACGTGCGGAGATTCGTC | 59.417 | 52.381 | 0.00 | 0.00 | 35.49 | 4.20 |
2546 | 3433 | 2.602878 | GAGATTCGTCCGTGCTGTTTA | 58.397 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
2689 | 3607 | 2.612221 | GCACTACCCAGTTACCACAGTC | 60.612 | 54.545 | 0.00 | 0.00 | 30.46 | 3.51 |
2693 | 3611 | 2.062636 | ACCCAGTTACCACAGTCCATT | 58.937 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2694 | 3612 | 2.224769 | ACCCAGTTACCACAGTCCATTG | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2810 | 3767 | 7.040340 | TCACTCTCGTGACTAATCTTTCTTTCT | 60.040 | 37.037 | 0.00 | 0.00 | 44.85 | 2.52 |
2811 | 3768 | 7.596995 | CACTCTCGTGACTAATCTTTCTTTCTT | 59.403 | 37.037 | 0.00 | 0.00 | 43.97 | 2.52 |
2812 | 3769 | 8.145122 | ACTCTCGTGACTAATCTTTCTTTCTTT | 58.855 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2813 | 3770 | 8.522178 | TCTCGTGACTAATCTTTCTTTCTTTC | 57.478 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
2814 | 3771 | 8.361139 | TCTCGTGACTAATCTTTCTTTCTTTCT | 58.639 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
3063 | 4021 | 4.084900 | GCAAGTTTTCAAAAGGAATCGCAG | 60.085 | 41.667 | 0.00 | 0.00 | 34.91 | 5.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
368 | 388 | 1.375396 | CACCGTTGGATTCCTCGCA | 60.375 | 57.895 | 3.95 | 0.00 | 0.00 | 5.10 |
468 | 491 | 2.244000 | CGTCATTTGTCGCAACCCT | 58.756 | 52.632 | 0.00 | 0.00 | 0.00 | 4.34 |
481 | 504 | 4.170062 | GCACATGCAGCGCGTCAT | 62.170 | 61.111 | 8.43 | 10.86 | 41.59 | 3.06 |
508 | 531 | 1.353694 | ACTCCAATTTCTCTGGCTGCT | 59.646 | 47.619 | 0.00 | 0.00 | 33.63 | 4.24 |
512 | 535 | 3.883669 | AGATCACTCCAATTTCTCTGGC | 58.116 | 45.455 | 0.00 | 0.00 | 33.63 | 4.85 |
565 | 588 | 5.546526 | AGCTGTTTTTGTCCTTTGTTTTGA | 58.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
566 | 589 | 5.407995 | TGAGCTGTTTTTGTCCTTTGTTTTG | 59.592 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
567 | 590 | 5.546526 | TGAGCTGTTTTTGTCCTTTGTTTT | 58.453 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
568 | 591 | 5.146010 | TGAGCTGTTTTTGTCCTTTGTTT | 57.854 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
569 | 592 | 4.799564 | TGAGCTGTTTTTGTCCTTTGTT | 57.200 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
570 | 593 | 4.646492 | AGATGAGCTGTTTTTGTCCTTTGT | 59.354 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
571 | 594 | 5.192327 | AGATGAGCTGTTTTTGTCCTTTG | 57.808 | 39.130 | 0.00 | 0.00 | 0.00 | 2.77 |
572 | 595 | 6.959639 | TTAGATGAGCTGTTTTTGTCCTTT | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
573 | 596 | 6.959639 | TTTAGATGAGCTGTTTTTGTCCTT | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
574 | 597 | 6.515696 | GCTTTTAGATGAGCTGTTTTTGTCCT | 60.516 | 38.462 | 0.00 | 0.00 | 36.01 | 3.85 |
575 | 598 | 5.631096 | GCTTTTAGATGAGCTGTTTTTGTCC | 59.369 | 40.000 | 0.00 | 0.00 | 36.01 | 4.02 |
576 | 599 | 6.208644 | TGCTTTTAGATGAGCTGTTTTTGTC | 58.791 | 36.000 | 0.00 | 0.00 | 39.60 | 3.18 |
577 | 600 | 6.147864 | TGCTTTTAGATGAGCTGTTTTTGT | 57.852 | 33.333 | 0.00 | 0.00 | 39.60 | 2.83 |
578 | 601 | 5.118203 | GCTGCTTTTAGATGAGCTGTTTTTG | 59.882 | 40.000 | 0.00 | 0.00 | 39.25 | 2.44 |
579 | 602 | 5.225642 | GCTGCTTTTAGATGAGCTGTTTTT | 58.774 | 37.500 | 0.00 | 0.00 | 39.25 | 1.94 |
580 | 603 | 4.321527 | GGCTGCTTTTAGATGAGCTGTTTT | 60.322 | 41.667 | 0.00 | 0.00 | 39.25 | 2.43 |
581 | 604 | 3.192212 | GGCTGCTTTTAGATGAGCTGTTT | 59.808 | 43.478 | 0.00 | 0.00 | 39.25 | 2.83 |
582 | 605 | 2.751806 | GGCTGCTTTTAGATGAGCTGTT | 59.248 | 45.455 | 0.00 | 0.00 | 39.25 | 3.16 |
583 | 606 | 2.363683 | GGCTGCTTTTAGATGAGCTGT | 58.636 | 47.619 | 0.00 | 0.00 | 39.25 | 4.40 |
584 | 607 | 1.674962 | GGGCTGCTTTTAGATGAGCTG | 59.325 | 52.381 | 0.00 | 0.00 | 39.60 | 4.24 |
585 | 608 | 1.409381 | GGGGCTGCTTTTAGATGAGCT | 60.409 | 52.381 | 0.00 | 0.00 | 39.60 | 4.09 |
586 | 609 | 1.028130 | GGGGCTGCTTTTAGATGAGC | 58.972 | 55.000 | 0.00 | 0.00 | 39.33 | 4.26 |
587 | 610 | 1.303309 | CGGGGCTGCTTTTAGATGAG | 58.697 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
588 | 611 | 0.618458 | ACGGGGCTGCTTTTAGATGA | 59.382 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
589 | 612 | 0.734889 | CACGGGGCTGCTTTTAGATG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
590 | 613 | 1.032114 | GCACGGGGCTGCTTTTAGAT | 61.032 | 55.000 | 0.00 | 0.00 | 40.25 | 1.98 |
591 | 614 | 1.674322 | GCACGGGGCTGCTTTTAGA | 60.674 | 57.895 | 0.00 | 0.00 | 40.25 | 2.10 |
592 | 615 | 1.523154 | TTGCACGGGGCTGCTTTTAG | 61.523 | 55.000 | 2.92 | 0.00 | 45.15 | 1.85 |
593 | 616 | 1.523154 | CTTGCACGGGGCTGCTTTTA | 61.523 | 55.000 | 2.92 | 0.00 | 45.15 | 1.52 |
594 | 617 | 2.837291 | TTGCACGGGGCTGCTTTT | 60.837 | 55.556 | 2.92 | 0.00 | 45.15 | 2.27 |
595 | 618 | 3.297620 | CTTGCACGGGGCTGCTTT | 61.298 | 61.111 | 2.92 | 0.00 | 45.15 | 3.51 |
596 | 619 | 2.690653 | TAACTTGCACGGGGCTGCTT | 62.691 | 55.000 | 2.92 | 0.00 | 45.15 | 3.91 |
597 | 620 | 2.690653 | TTAACTTGCACGGGGCTGCT | 62.691 | 55.000 | 2.92 | 0.00 | 45.15 | 4.24 |
598 | 621 | 1.801309 | TTTAACTTGCACGGGGCTGC | 61.801 | 55.000 | 2.92 | 0.00 | 45.15 | 5.25 |
599 | 622 | 0.039527 | GTTTAACTTGCACGGGGCTG | 60.040 | 55.000 | 2.92 | 0.00 | 45.15 | 4.85 |
600 | 623 | 0.466555 | TGTTTAACTTGCACGGGGCT | 60.467 | 50.000 | 2.92 | 0.00 | 45.15 | 5.19 |
601 | 624 | 0.386113 | TTGTTTAACTTGCACGGGGC | 59.614 | 50.000 | 0.00 | 0.00 | 45.13 | 5.80 |
602 | 625 | 1.601914 | GCTTGTTTAACTTGCACGGGG | 60.602 | 52.381 | 0.00 | 0.00 | 0.00 | 5.73 |
603 | 626 | 1.601914 | GGCTTGTTTAACTTGCACGGG | 60.602 | 52.381 | 12.69 | 0.00 | 0.00 | 5.28 |
604 | 627 | 1.601914 | GGGCTTGTTTAACTTGCACGG | 60.602 | 52.381 | 12.69 | 0.00 | 0.00 | 4.94 |
605 | 628 | 1.066303 | TGGGCTTGTTTAACTTGCACG | 59.934 | 47.619 | 12.69 | 0.00 | 0.00 | 5.34 |
606 | 629 | 2.880963 | TGGGCTTGTTTAACTTGCAC | 57.119 | 45.000 | 12.69 | 10.36 | 0.00 | 4.57 |
607 | 630 | 3.449018 | TCTTTGGGCTTGTTTAACTTGCA | 59.551 | 39.130 | 12.69 | 0.00 | 0.00 | 4.08 |
608 | 631 | 4.053469 | TCTTTGGGCTTGTTTAACTTGC | 57.947 | 40.909 | 0.00 | 0.80 | 0.00 | 4.01 |
609 | 632 | 6.976636 | TTTTCTTTGGGCTTGTTTAACTTG | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
610 | 633 | 6.937465 | TGTTTTTCTTTGGGCTTGTTTAACTT | 59.063 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
611 | 634 | 6.468543 | TGTTTTTCTTTGGGCTTGTTTAACT | 58.531 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
612 | 635 | 6.729391 | TGTTTTTCTTTGGGCTTGTTTAAC | 57.271 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
613 | 636 | 7.745620 | TTTGTTTTTCTTTGGGCTTGTTTAA | 57.254 | 28.000 | 0.00 | 0.00 | 0.00 | 1.52 |
614 | 637 | 7.607991 | TCATTTGTTTTTCTTTGGGCTTGTTTA | 59.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
615 | 638 | 6.432472 | TCATTTGTTTTTCTTTGGGCTTGTTT | 59.568 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
616 | 639 | 5.942826 | TCATTTGTTTTTCTTTGGGCTTGTT | 59.057 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
617 | 640 | 5.495640 | TCATTTGTTTTTCTTTGGGCTTGT | 58.504 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
618 | 641 | 6.434018 | TTCATTTGTTTTTCTTTGGGCTTG | 57.566 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
619 | 642 | 6.827762 | TCATTCATTTGTTTTTCTTTGGGCTT | 59.172 | 30.769 | 0.00 | 0.00 | 0.00 | 4.35 |
620 | 643 | 6.260714 | GTCATTCATTTGTTTTTCTTTGGGCT | 59.739 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
621 | 644 | 6.038050 | TGTCATTCATTTGTTTTTCTTTGGGC | 59.962 | 34.615 | 0.00 | 0.00 | 0.00 | 5.36 |
622 | 645 | 7.551035 | TGTCATTCATTTGTTTTTCTTTGGG | 57.449 | 32.000 | 0.00 | 0.00 | 0.00 | 4.12 |
623 | 646 | 8.124199 | CCTTGTCATTCATTTGTTTTTCTTTGG | 58.876 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
624 | 647 | 8.881743 | TCCTTGTCATTCATTTGTTTTTCTTTG | 58.118 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
625 | 648 | 9.447157 | TTCCTTGTCATTCATTTGTTTTTCTTT | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
626 | 649 | 9.447157 | TTTCCTTGTCATTCATTTGTTTTTCTT | 57.553 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
627 | 650 | 9.617523 | ATTTCCTTGTCATTCATTTGTTTTTCT | 57.382 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
630 | 653 | 9.393512 | TCAATTTCCTTGTCATTCATTTGTTTT | 57.606 | 25.926 | 0.00 | 0.00 | 36.20 | 2.43 |
631 | 654 | 8.961294 | TCAATTTCCTTGTCATTCATTTGTTT | 57.039 | 26.923 | 0.00 | 0.00 | 36.20 | 2.83 |
632 | 655 | 9.211485 | GATCAATTTCCTTGTCATTCATTTGTT | 57.789 | 29.630 | 0.00 | 0.00 | 36.20 | 2.83 |
633 | 656 | 7.543172 | CGATCAATTTCCTTGTCATTCATTTGT | 59.457 | 33.333 | 0.00 | 0.00 | 36.20 | 2.83 |
634 | 657 | 7.009815 | CCGATCAATTTCCTTGTCATTCATTTG | 59.990 | 37.037 | 0.00 | 0.00 | 36.20 | 2.32 |
635 | 658 | 7.037438 | CCGATCAATTTCCTTGTCATTCATTT | 58.963 | 34.615 | 0.00 | 0.00 | 36.20 | 2.32 |
636 | 659 | 6.406177 | CCCGATCAATTTCCTTGTCATTCATT | 60.406 | 38.462 | 0.00 | 0.00 | 36.20 | 2.57 |
637 | 660 | 5.068198 | CCCGATCAATTTCCTTGTCATTCAT | 59.932 | 40.000 | 0.00 | 0.00 | 36.20 | 2.57 |
638 | 661 | 4.398988 | CCCGATCAATTTCCTTGTCATTCA | 59.601 | 41.667 | 0.00 | 0.00 | 36.20 | 2.57 |
639 | 662 | 4.202050 | CCCCGATCAATTTCCTTGTCATTC | 60.202 | 45.833 | 0.00 | 0.00 | 36.20 | 2.67 |
640 | 663 | 3.701040 | CCCCGATCAATTTCCTTGTCATT | 59.299 | 43.478 | 0.00 | 0.00 | 36.20 | 2.57 |
641 | 664 | 3.290710 | CCCCGATCAATTTCCTTGTCAT | 58.709 | 45.455 | 0.00 | 0.00 | 36.20 | 3.06 |
642 | 665 | 2.722094 | CCCCGATCAATTTCCTTGTCA | 58.278 | 47.619 | 0.00 | 0.00 | 36.20 | 3.58 |
643 | 666 | 1.405463 | GCCCCGATCAATTTCCTTGTC | 59.595 | 52.381 | 0.00 | 0.00 | 36.20 | 3.18 |
644 | 667 | 1.272425 | TGCCCCGATCAATTTCCTTGT | 60.272 | 47.619 | 0.00 | 0.00 | 36.20 | 3.16 |
645 | 668 | 1.473258 | TGCCCCGATCAATTTCCTTG | 58.527 | 50.000 | 0.00 | 0.00 | 36.09 | 3.61 |
646 | 669 | 2.091665 | AGATGCCCCGATCAATTTCCTT | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
647 | 670 | 1.496429 | AGATGCCCCGATCAATTTCCT | 59.504 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
648 | 671 | 1.610522 | CAGATGCCCCGATCAATTTCC | 59.389 | 52.381 | 0.00 | 0.00 | 0.00 | 3.13 |
649 | 672 | 1.000938 | GCAGATGCCCCGATCAATTTC | 60.001 | 52.381 | 0.00 | 0.00 | 34.31 | 2.17 |
650 | 673 | 1.035139 | GCAGATGCCCCGATCAATTT | 58.965 | 50.000 | 0.00 | 0.00 | 34.31 | 1.82 |
651 | 674 | 0.106569 | TGCAGATGCCCCGATCAATT | 60.107 | 50.000 | 1.72 | 0.00 | 41.18 | 2.32 |
652 | 675 | 0.536687 | CTGCAGATGCCCCGATCAAT | 60.537 | 55.000 | 8.42 | 0.00 | 41.18 | 2.57 |
653 | 676 | 1.153107 | CTGCAGATGCCCCGATCAA | 60.153 | 57.895 | 8.42 | 0.00 | 41.18 | 2.57 |
654 | 677 | 2.507452 | CTGCAGATGCCCCGATCA | 59.493 | 61.111 | 8.42 | 0.00 | 41.18 | 2.92 |
655 | 678 | 2.121992 | ATCCTGCAGATGCCCCGATC | 62.122 | 60.000 | 17.39 | 0.00 | 41.18 | 3.69 |
656 | 679 | 2.152058 | ATCCTGCAGATGCCCCGAT | 61.152 | 57.895 | 17.39 | 4.29 | 41.18 | 4.18 |
657 | 680 | 2.769621 | ATCCTGCAGATGCCCCGA | 60.770 | 61.111 | 17.39 | 1.60 | 41.18 | 5.14 |
658 | 681 | 2.593725 | CATCCTGCAGATGCCCCG | 60.594 | 66.667 | 17.39 | 0.00 | 45.76 | 5.73 |
677 | 700 | 4.142881 | CGAAGTCTAAGTCGACTGATGTCA | 60.143 | 45.833 | 20.85 | 0.00 | 43.14 | 3.58 |
678 | 701 | 4.336101 | CGAAGTCTAAGTCGACTGATGTC | 58.664 | 47.826 | 20.85 | 12.43 | 43.14 | 3.06 |
679 | 702 | 3.426426 | GCGAAGTCTAAGTCGACTGATGT | 60.426 | 47.826 | 20.85 | 5.70 | 43.14 | 3.06 |
680 | 703 | 3.102276 | GCGAAGTCTAAGTCGACTGATG | 58.898 | 50.000 | 20.85 | 12.23 | 43.14 | 3.07 |
681 | 704 | 2.223066 | CGCGAAGTCTAAGTCGACTGAT | 60.223 | 50.000 | 20.85 | 6.95 | 43.14 | 2.90 |
682 | 705 | 1.128136 | CGCGAAGTCTAAGTCGACTGA | 59.872 | 52.381 | 20.85 | 11.31 | 43.14 | 3.41 |
683 | 706 | 1.128136 | TCGCGAAGTCTAAGTCGACTG | 59.872 | 52.381 | 20.85 | 7.79 | 43.14 | 3.51 |
684 | 707 | 1.436600 | TCGCGAAGTCTAAGTCGACT | 58.563 | 50.000 | 13.58 | 13.58 | 45.73 | 4.18 |
685 | 708 | 2.167591 | CTTCGCGAAGTCTAAGTCGAC | 58.832 | 52.381 | 34.97 | 7.70 | 39.64 | 4.20 |
686 | 709 | 2.522372 | CTTCGCGAAGTCTAAGTCGA | 57.478 | 50.000 | 34.97 | 4.60 | 39.64 | 4.20 |
696 | 719 | 3.362237 | CAGTTGACTTAGACTTCGCGAAG | 59.638 | 47.826 | 39.55 | 39.55 | 43.79 | 3.79 |
697 | 720 | 3.004002 | TCAGTTGACTTAGACTTCGCGAA | 59.996 | 43.478 | 22.01 | 22.01 | 0.00 | 4.70 |
698 | 721 | 2.551032 | TCAGTTGACTTAGACTTCGCGA | 59.449 | 45.455 | 3.71 | 3.71 | 0.00 | 5.87 |
699 | 722 | 2.911723 | CTCAGTTGACTTAGACTTCGCG | 59.088 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
700 | 723 | 3.903360 | ACTCAGTTGACTTAGACTTCGC | 58.097 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
701 | 724 | 6.670233 | ACTAACTCAGTTGACTTAGACTTCG | 58.330 | 40.000 | 0.00 | 0.00 | 31.59 | 3.79 |
715 | 738 | 8.932791 | CGTAATTTTCCATACAACTAACTCAGT | 58.067 | 33.333 | 0.00 | 0.00 | 40.05 | 3.41 |
716 | 739 | 8.932791 | ACGTAATTTTCCATACAACTAACTCAG | 58.067 | 33.333 | 0.00 | 0.00 | 0.00 | 3.35 |
717 | 740 | 8.836268 | ACGTAATTTTCCATACAACTAACTCA | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
719 | 742 | 9.374838 | CCTACGTAATTTTCCATACAACTAACT | 57.625 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
720 | 743 | 8.118607 | GCCTACGTAATTTTCCATACAACTAAC | 58.881 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
721 | 744 | 7.280652 | GGCCTACGTAATTTTCCATACAACTAA | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
722 | 745 | 6.762661 | GGCCTACGTAATTTTCCATACAACTA | 59.237 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
723 | 746 | 5.587443 | GGCCTACGTAATTTTCCATACAACT | 59.413 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
724 | 747 | 5.587443 | AGGCCTACGTAATTTTCCATACAAC | 59.413 | 40.000 | 1.29 | 0.00 | 0.00 | 3.32 |
725 | 748 | 5.747342 | AGGCCTACGTAATTTTCCATACAA | 58.253 | 37.500 | 1.29 | 0.00 | 0.00 | 2.41 |
726 | 749 | 5.362105 | AGGCCTACGTAATTTTCCATACA | 57.638 | 39.130 | 1.29 | 0.00 | 0.00 | 2.29 |
727 | 750 | 5.050567 | CGAAGGCCTACGTAATTTTCCATAC | 60.051 | 44.000 | 5.16 | 0.00 | 0.00 | 2.39 |
728 | 751 | 5.051816 | CGAAGGCCTACGTAATTTTCCATA | 58.948 | 41.667 | 5.16 | 0.00 | 0.00 | 2.74 |
729 | 752 | 3.875134 | CGAAGGCCTACGTAATTTTCCAT | 59.125 | 43.478 | 5.16 | 0.00 | 0.00 | 3.41 |
730 | 753 | 3.264104 | CGAAGGCCTACGTAATTTTCCA | 58.736 | 45.455 | 5.16 | 0.00 | 0.00 | 3.53 |
731 | 754 | 3.264947 | ACGAAGGCCTACGTAATTTTCC | 58.735 | 45.455 | 5.16 | 0.00 | 40.92 | 3.13 |
732 | 755 | 4.505556 | CCTACGAAGGCCTACGTAATTTTC | 59.494 | 45.833 | 5.16 | 0.00 | 42.77 | 2.29 |
733 | 756 | 4.436332 | CCTACGAAGGCCTACGTAATTTT | 58.564 | 43.478 | 5.16 | 0.00 | 42.77 | 1.82 |
734 | 757 | 4.050852 | CCTACGAAGGCCTACGTAATTT | 57.949 | 45.455 | 5.16 | 0.00 | 42.77 | 1.82 |
735 | 758 | 3.722728 | CCTACGAAGGCCTACGTAATT | 57.277 | 47.619 | 5.16 | 0.00 | 42.77 | 1.40 |
746 | 769 | 2.957006 | ACCTACATAGTGCCTACGAAGG | 59.043 | 50.000 | 0.00 | 0.00 | 46.76 | 3.46 |
747 | 770 | 3.380637 | ACACCTACATAGTGCCTACGAAG | 59.619 | 47.826 | 0.00 | 0.00 | 38.87 | 3.79 |
748 | 771 | 3.359033 | ACACCTACATAGTGCCTACGAA | 58.641 | 45.455 | 0.00 | 0.00 | 38.87 | 3.85 |
749 | 772 | 3.008835 | ACACCTACATAGTGCCTACGA | 57.991 | 47.619 | 0.00 | 0.00 | 38.87 | 3.43 |
750 | 773 | 3.252701 | CCTACACCTACATAGTGCCTACG | 59.747 | 52.174 | 0.00 | 0.00 | 38.87 | 3.51 |
751 | 774 | 4.467769 | TCCTACACCTACATAGTGCCTAC | 58.532 | 47.826 | 0.00 | 0.00 | 38.87 | 3.18 |
752 | 775 | 4.801521 | TCCTACACCTACATAGTGCCTA | 57.198 | 45.455 | 0.00 | 0.00 | 38.87 | 3.93 |
753 | 776 | 3.682592 | TCCTACACCTACATAGTGCCT | 57.317 | 47.619 | 0.00 | 0.00 | 38.87 | 4.75 |
754 | 777 | 4.957684 | AATCCTACACCTACATAGTGCC | 57.042 | 45.455 | 0.00 | 0.00 | 38.87 | 5.01 |
755 | 778 | 6.072064 | ACGATAATCCTACACCTACATAGTGC | 60.072 | 42.308 | 0.00 | 0.00 | 38.87 | 4.40 |
756 | 779 | 7.450124 | ACGATAATCCTACACCTACATAGTG | 57.550 | 40.000 | 0.00 | 0.00 | 41.15 | 2.74 |
757 | 780 | 8.358148 | CAAACGATAATCCTACACCTACATAGT | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
758 | 781 | 8.358148 | ACAAACGATAATCCTACACCTACATAG | 58.642 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
759 | 782 | 8.241497 | ACAAACGATAATCCTACACCTACATA | 57.759 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
760 | 783 | 7.120923 | ACAAACGATAATCCTACACCTACAT | 57.879 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
761 | 784 | 6.534475 | ACAAACGATAATCCTACACCTACA | 57.466 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
762 | 785 | 7.838771 | AAACAAACGATAATCCTACACCTAC | 57.161 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
763 | 786 | 7.550196 | GGAAAACAAACGATAATCCTACACCTA | 59.450 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
764 | 787 | 6.373495 | GGAAAACAAACGATAATCCTACACCT | 59.627 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
765 | 788 | 6.149807 | TGGAAAACAAACGATAATCCTACACC | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 4.16 |
766 | 789 | 7.136289 | TGGAAAACAAACGATAATCCTACAC | 57.864 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
767 | 790 | 7.148154 | CCATGGAAAACAAACGATAATCCTACA | 60.148 | 37.037 | 5.56 | 0.00 | 0.00 | 2.74 |
768 | 791 | 7.193595 | CCATGGAAAACAAACGATAATCCTAC | 58.806 | 38.462 | 5.56 | 0.00 | 0.00 | 3.18 |
769 | 792 | 6.183360 | GCCATGGAAAACAAACGATAATCCTA | 60.183 | 38.462 | 18.40 | 0.00 | 0.00 | 2.94 |
770 | 793 | 5.394115 | GCCATGGAAAACAAACGATAATCCT | 60.394 | 40.000 | 18.40 | 0.00 | 0.00 | 3.24 |
771 | 794 | 4.803613 | GCCATGGAAAACAAACGATAATCC | 59.196 | 41.667 | 18.40 | 0.00 | 0.00 | 3.01 |
772 | 795 | 4.803613 | GGCCATGGAAAACAAACGATAATC | 59.196 | 41.667 | 18.40 | 0.00 | 0.00 | 1.75 |
773 | 796 | 4.676723 | CGGCCATGGAAAACAAACGATAAT | 60.677 | 41.667 | 18.40 | 0.00 | 0.00 | 1.28 |
774 | 797 | 3.366476 | CGGCCATGGAAAACAAACGATAA | 60.366 | 43.478 | 18.40 | 0.00 | 0.00 | 1.75 |
775 | 798 | 2.162608 | CGGCCATGGAAAACAAACGATA | 59.837 | 45.455 | 18.40 | 0.00 | 0.00 | 2.92 |
776 | 799 | 1.067915 | CGGCCATGGAAAACAAACGAT | 60.068 | 47.619 | 18.40 | 0.00 | 0.00 | 3.73 |
777 | 800 | 0.312416 | CGGCCATGGAAAACAAACGA | 59.688 | 50.000 | 18.40 | 0.00 | 0.00 | 3.85 |
778 | 801 | 0.312416 | TCGGCCATGGAAAACAAACG | 59.688 | 50.000 | 18.40 | 6.10 | 0.00 | 3.60 |
779 | 802 | 2.741759 | ATCGGCCATGGAAAACAAAC | 57.258 | 45.000 | 18.40 | 0.00 | 0.00 | 2.93 |
780 | 803 | 3.574396 | TGTTATCGGCCATGGAAAACAAA | 59.426 | 39.130 | 18.40 | 0.00 | 0.00 | 2.83 |
781 | 804 | 3.157881 | TGTTATCGGCCATGGAAAACAA | 58.842 | 40.909 | 18.40 | 0.00 | 0.00 | 2.83 |
782 | 805 | 2.796557 | TGTTATCGGCCATGGAAAACA | 58.203 | 42.857 | 18.40 | 13.87 | 0.00 | 2.83 |
783 | 806 | 3.859411 | TTGTTATCGGCCATGGAAAAC | 57.141 | 42.857 | 18.40 | 11.46 | 0.00 | 2.43 |
784 | 807 | 3.829601 | AGTTTGTTATCGGCCATGGAAAA | 59.170 | 39.130 | 18.40 | 0.00 | 0.00 | 2.29 |
785 | 808 | 3.426615 | AGTTTGTTATCGGCCATGGAAA | 58.573 | 40.909 | 18.40 | 0.86 | 0.00 | 3.13 |
786 | 809 | 3.080300 | AGTTTGTTATCGGCCATGGAA | 57.920 | 42.857 | 18.40 | 0.00 | 0.00 | 3.53 |
787 | 810 | 2.799126 | AGTTTGTTATCGGCCATGGA | 57.201 | 45.000 | 18.40 | 0.00 | 0.00 | 3.41 |
788 | 811 | 3.016736 | AGAAGTTTGTTATCGGCCATGG | 58.983 | 45.455 | 7.63 | 7.63 | 0.00 | 3.66 |
789 | 812 | 4.438744 | GGAAGAAGTTTGTTATCGGCCATG | 60.439 | 45.833 | 2.24 | 0.00 | 0.00 | 3.66 |
790 | 813 | 3.694566 | GGAAGAAGTTTGTTATCGGCCAT | 59.305 | 43.478 | 2.24 | 0.00 | 0.00 | 4.40 |
791 | 814 | 3.078837 | GGAAGAAGTTTGTTATCGGCCA | 58.921 | 45.455 | 2.24 | 0.00 | 0.00 | 5.36 |
792 | 815 | 3.344515 | AGGAAGAAGTTTGTTATCGGCC | 58.655 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
793 | 816 | 5.181433 | AGAAAGGAAGAAGTTTGTTATCGGC | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 5.54 |
804 | 827 | 5.247337 | AGAGGAATCGAAGAAAGGAAGAAGT | 59.753 | 40.000 | 0.00 | 0.00 | 43.58 | 3.01 |
805 | 828 | 5.729510 | AGAGGAATCGAAGAAAGGAAGAAG | 58.270 | 41.667 | 0.00 | 0.00 | 43.58 | 2.85 |
806 | 829 | 5.337652 | GGAGAGGAATCGAAGAAAGGAAGAA | 60.338 | 44.000 | 0.00 | 0.00 | 43.58 | 2.52 |
844 | 868 | 1.072965 | GATGGGGAGCAGGATTTCGAT | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
846 | 881 | 0.882042 | CGATGGGGAGCAGGATTTCG | 60.882 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
847 | 882 | 0.536006 | CCGATGGGGAGCAGGATTTC | 60.536 | 60.000 | 0.00 | 0.00 | 38.47 | 2.17 |
872 | 907 | 3.600448 | TGGATGATGAAGGGGAAATCC | 57.400 | 47.619 | 0.00 | 0.00 | 35.23 | 3.01 |
873 | 908 | 8.884124 | TTATATTGGATGATGAAGGGGAAATC | 57.116 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
874 | 909 | 8.681584 | TCTTATATTGGATGATGAAGGGGAAAT | 58.318 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
875 | 910 | 7.944554 | GTCTTATATTGGATGATGAAGGGGAAA | 59.055 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
877 | 912 | 6.295859 | CGTCTTATATTGGATGATGAAGGGGA | 60.296 | 42.308 | 0.00 | 0.00 | 0.00 | 4.81 |
878 | 913 | 5.877012 | CGTCTTATATTGGATGATGAAGGGG | 59.123 | 44.000 | 0.00 | 0.00 | 0.00 | 4.79 |
879 | 914 | 5.352569 | GCGTCTTATATTGGATGATGAAGGG | 59.647 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
880 | 915 | 5.352569 | GGCGTCTTATATTGGATGATGAAGG | 59.647 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
881 | 916 | 5.934043 | TGGCGTCTTATATTGGATGATGAAG | 59.066 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
883 | 918 | 5.482163 | TGGCGTCTTATATTGGATGATGA | 57.518 | 39.130 | 0.00 | 0.00 | 0.00 | 2.92 |
885 | 920 | 5.221925 | ACCTTGGCGTCTTATATTGGATGAT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
886 | 921 | 4.102524 | ACCTTGGCGTCTTATATTGGATGA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
888 | 923 | 4.706842 | ACCTTGGCGTCTTATATTGGAT | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
890 | 925 | 3.739300 | CGTACCTTGGCGTCTTATATTGG | 59.261 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
892 | 927 | 3.385755 | ACCGTACCTTGGCGTCTTATATT | 59.614 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
905 | 959 | 1.098050 | CAGCCTACGTACCGTACCTT | 58.902 | 55.000 | 3.04 | 0.00 | 41.54 | 3.50 |
920 | 979 | 0.388520 | GAACCGAATTTGCACCAGCC | 60.389 | 55.000 | 0.00 | 0.00 | 41.13 | 4.85 |
923 | 982 | 3.134574 | AGTAGAACCGAATTTGCACCA | 57.865 | 42.857 | 0.00 | 0.00 | 0.00 | 4.17 |
971 | 1040 | 2.047179 | GTGGAGAACAGACGGGGC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 5.80 |
1005 | 1074 | 0.601311 | GTGAGGTCGAGCTGCTGTTT | 60.601 | 55.000 | 23.97 | 0.00 | 0.00 | 2.83 |
1067 | 1136 | 3.125316 | GGTCATCTCGAAATTCAGCGTTT | 59.875 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
1074 | 1143 | 5.720261 | GGTAACTGGTCATCTCGAAATTC | 57.280 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1091 | 1160 | 1.095600 | GCCCTTAAGCTGCAGGTAAC | 58.904 | 55.000 | 20.51 | 0.00 | 0.00 | 2.50 |
1104 | 1173 | 2.994699 | CCGACACCCATGCCCTTA | 59.005 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
1105 | 1174 | 4.740822 | GCCGACACCCATGCCCTT | 62.741 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1142 | 1212 | 3.014085 | TAGCCGCCGACTTCAAGGG | 62.014 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
1146 | 1216 | 1.812686 | AACTGTAGCCGCCGACTTCA | 61.813 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1164 | 1234 | 2.093181 | CGGGTAGAACATGATGTCCCAA | 60.093 | 50.000 | 17.21 | 0.00 | 32.00 | 4.12 |
1168 | 1238 | 1.485066 | ACCCGGGTAGAACATGATGTC | 59.515 | 52.381 | 29.13 | 0.00 | 0.00 | 3.06 |
1170 | 1240 | 1.475034 | CCACCCGGGTAGAACATGATG | 60.475 | 57.143 | 29.72 | 9.88 | 0.00 | 3.07 |
1193 | 1263 | 4.135153 | CGCCACAGTCCTCCTCGG | 62.135 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
1221 | 1291 | 0.038892 | TGTGACGGTAGAGAAACGCC | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1228 | 1298 | 0.888619 | TCCTTGCTGTGACGGTAGAG | 59.111 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1231 | 1301 | 0.032952 | GTGTCCTTGCTGTGACGGTA | 59.967 | 55.000 | 0.00 | 0.00 | 34.18 | 4.02 |
1234 | 1304 | 2.310233 | CCGTGTCCTTGCTGTGACG | 61.310 | 63.158 | 0.00 | 0.00 | 34.18 | 4.35 |
1237 | 1307 | 1.021390 | GGATCCGTGTCCTTGCTGTG | 61.021 | 60.000 | 0.00 | 0.00 | 35.32 | 3.66 |
1243 | 1313 | 2.284405 | ACCCGGATCCGTGTCCTT | 60.284 | 61.111 | 31.22 | 2.23 | 36.07 | 3.36 |
1245 | 1315 | 3.387947 | ACACCCGGATCCGTGTCC | 61.388 | 66.667 | 31.22 | 0.00 | 37.81 | 4.02 |
1259 | 1332 | 2.280797 | TGAAGCTGCCGGTCACAC | 60.281 | 61.111 | 1.90 | 0.00 | 0.00 | 3.82 |
1272 | 1345 | 1.144565 | CTCGGATGCTCAGCGTGAAG | 61.145 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1289 | 1362 | 0.326264 | TGCCTGGCTCCTTTTCTCTC | 59.674 | 55.000 | 21.03 | 0.00 | 0.00 | 3.20 |
1319 | 1392 | 2.125512 | GCCTCACCGCATCGAAGT | 60.126 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
1362 | 1441 | 2.037053 | CACGAATTTGTGGTGGCCA | 58.963 | 52.632 | 16.91 | 0.00 | 36.20 | 5.36 |
1470 | 1555 | 2.437359 | CTGGGCAGCTCCGGAAAG | 60.437 | 66.667 | 5.23 | 0.00 | 35.18 | 2.62 |
1501 | 1598 | 2.045926 | GAGCATGCCCACGAGGTT | 60.046 | 61.111 | 15.66 | 0.00 | 38.26 | 3.50 |
1503 | 1600 | 4.147449 | TCGAGCATGCCCACGAGG | 62.147 | 66.667 | 21.87 | 0.00 | 39.47 | 4.63 |
1508 | 1605 | 4.147449 | CGTCCTCGAGCATGCCCA | 62.147 | 66.667 | 15.66 | 0.00 | 39.71 | 5.36 |
1510 | 1607 | 4.899239 | CCCGTCCTCGAGCATGCC | 62.899 | 72.222 | 15.66 | 4.99 | 39.71 | 4.40 |
1708 | 1808 | 2.030946 | GCGGCAGCTTGTCTGTATAAAG | 59.969 | 50.000 | 0.00 | 0.00 | 44.66 | 1.85 |
1839 | 2687 | 1.664965 | GGTCGCGGCATCCATAGTC | 60.665 | 63.158 | 14.93 | 0.00 | 0.00 | 2.59 |
1966 | 2817 | 1.977188 | CGTGTCATGAAGCTCACGTA | 58.023 | 50.000 | 21.82 | 0.00 | 45.26 | 3.57 |
1970 | 2821 | 0.867746 | GCAACGTGTCATGAAGCTCA | 59.132 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2012 | 2869 | 6.091986 | GTGATCAACTTCTTCCTCTTCATGAC | 59.908 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
2087 | 2945 | 4.449405 | TCAAAATGTTCATTGTGCATGCAG | 59.551 | 37.500 | 23.41 | 9.73 | 32.13 | 4.41 |
2093 | 2959 | 5.927954 | ATGGTTCAAAATGTTCATTGTGC | 57.072 | 34.783 | 9.97 | 0.00 | 0.00 | 4.57 |
2094 | 2960 | 6.482641 | TGGAATGGTTCAAAATGTTCATTGTG | 59.517 | 34.615 | 8.85 | 8.85 | 0.00 | 3.33 |
2095 | 2961 | 6.590068 | TGGAATGGTTCAAAATGTTCATTGT | 58.410 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2096 | 2962 | 7.493743 | TTGGAATGGTTCAAAATGTTCATTG | 57.506 | 32.000 | 0.00 | 0.00 | 0.00 | 2.82 |
2198 | 3075 | 2.897326 | AGGCAAACATAAACCTTCCACC | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
2241 | 3124 | 1.826720 | TCCAAGGAGAAATGCAATGGC | 59.173 | 47.619 | 0.00 | 0.00 | 41.68 | 4.40 |
2243 | 3126 | 3.958798 | AGGATCCAAGGAGAAATGCAATG | 59.041 | 43.478 | 15.82 | 0.00 | 0.00 | 2.82 |
2252 | 3135 | 1.635487 | CACCCAAAGGATCCAAGGAGA | 59.365 | 52.381 | 15.82 | 0.00 | 36.73 | 3.71 |
2426 | 3313 | 8.023128 | ACTGTTCTTTAAATGTGCATGTACATC | 58.977 | 33.333 | 26.65 | 13.71 | 40.24 | 3.06 |
2708 | 3664 | 5.975988 | AAGATAGACATGGGTGTGGTAAT | 57.024 | 39.130 | 0.00 | 0.00 | 39.09 | 1.89 |
2718 | 3674 | 6.824305 | AAGGTGACAAAAAGATAGACATGG | 57.176 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
2753 | 3709 | 4.274602 | TGGTCGCTTTCCTATTAACACA | 57.725 | 40.909 | 0.00 | 0.00 | 0.00 | 3.72 |
2754 | 3710 | 4.634443 | ACATGGTCGCTTTCCTATTAACAC | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
3012 | 3970 | 6.247903 | TGCGATCTATTTTTAAAGACTTGCG | 58.752 | 36.000 | 0.00 | 0.00 | 0.00 | 4.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.