Multiple sequence alignment - TraesCS2D01G472900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G472900 chr2D 100.000 3071 0 0 1 3071 576459612 576462682 0.000000e+00 5672.0
1 TraesCS2D01G472900 chr2D 83.618 1697 177 52 810 2426 576294094 576295769 0.000000e+00 1500.0
2 TraesCS2D01G472900 chr2D 85.282 1454 150 32 894 2311 576580349 576581774 0.000000e+00 1441.0
3 TraesCS2D01G472900 chr2D 91.228 570 40 9 1 565 113479163 113478599 0.000000e+00 767.0
4 TraesCS2D01G472900 chr2D 90.559 572 47 5 1 565 9671927 9672498 0.000000e+00 750.0
5 TraesCS2D01G472900 chr2D 90.385 572 43 11 1 565 489573648 489573082 0.000000e+00 741.0
6 TraesCS2D01G472900 chr2A 86.711 2235 206 47 894 3063 714343973 714346181 0.000000e+00 2398.0
7 TraesCS2D01G472900 chr2A 85.226 1435 152 41 795 2189 714528778 714530192 0.000000e+00 1421.0
8 TraesCS2D01G472900 chr2A 95.238 63 2 1 722 783 15641217 15641279 7.010000e-17 99.0
9 TraesCS2D01G472900 chr2A 95.238 63 2 1 722 783 15641404 15641466 7.010000e-17 99.0
10 TraesCS2D01G472900 chrUn 84.308 1300 164 24 908 2178 328242089 328243377 0.000000e+00 1234.0
11 TraesCS2D01G472900 chr2B 84.308 1300 164 24 908 2178 692489398 692490686 0.000000e+00 1234.0
12 TraesCS2D01G472900 chr2B 85.194 797 93 16 936 1712 692615165 692615956 0.000000e+00 795.0
13 TraesCS2D01G472900 chr2B 85.251 617 45 13 1704 2311 692616681 692617260 7.330000e-166 593.0
14 TraesCS2D01G472900 chr2B 84.483 116 18 0 1077 1192 693041812 693041697 6.960000e-22 115.0
15 TraesCS2D01G472900 chr2B 95.745 47 2 0 2262 2308 692524915 692524869 3.280000e-10 76.8
16 TraesCS2D01G472900 chr5A 89.713 661 22 14 2448 3071 704253551 704254202 0.000000e+00 802.0
17 TraesCS2D01G472900 chr5A 88.740 524 14 13 2584 3071 704202020 704202534 1.580000e-167 599.0
18 TraesCS2D01G472900 chr5A 93.000 400 13 8 2680 3071 704093509 704093901 1.240000e-158 569.0
19 TraesCS2D01G472900 chr5A 92.982 399 14 9 2680 3071 704332954 704333345 1.240000e-158 569.0
20 TraesCS2D01G472900 chr5A 92.481 399 16 9 2680 3071 704123859 704124250 2.670000e-155 558.0
21 TraesCS2D01G472900 chr5A 92.727 275 12 4 2448 2717 704123595 704123866 1.030000e-104 390.0
22 TraesCS2D01G472900 chr5A 92.000 275 13 4 2448 2717 704093246 704093516 8.040000e-101 377.0
23 TraesCS2D01G472900 chr5A 94.737 114 5 1 2448 2561 704201854 704201966 3.150000e-40 176.0
24 TraesCS2D01G472900 chr5A 92.708 96 4 2 2622 2717 704332869 704332961 5.340000e-28 135.0
25 TraesCS2D01G472900 chr3D 91.388 569 42 7 1 565 475866744 475867309 0.000000e+00 773.0
26 TraesCS2D01G472900 chr3D 83.846 130 20 1 595 723 611570995 611570866 4.160000e-24 122.0
27 TraesCS2D01G472900 chr1D 91.373 568 42 7 1 565 58617028 58617591 0.000000e+00 771.0
28 TraesCS2D01G472900 chr1D 90.493 568 44 8 1 565 452250016 452250576 0.000000e+00 741.0
29 TraesCS2D01G472900 chr1D 97.727 44 1 0 678 721 467315175 467315218 3.280000e-10 76.8
30 TraesCS2D01G472900 chr5D 91.243 571 36 11 1 565 454030073 454029511 0.000000e+00 765.0
31 TraesCS2D01G472900 chr5D 91.068 571 38 12 1 565 544788241 544788804 0.000000e+00 760.0
32 TraesCS2D01G472900 chr5D 96.610 59 2 0 722 780 320306819 320306761 7.010000e-17 99.0
33 TraesCS2D01G472900 chr7D 90.893 571 42 8 1 565 14555133 14555699 0.000000e+00 758.0
34 TraesCS2D01G472900 chr5B 84.034 238 20 9 2452 2687 480240318 480240097 2.400000e-51 213.0
35 TraesCS2D01G472900 chr5B 92.537 67 5 0 2609 2675 429033486 429033552 2.520000e-16 97.1
36 TraesCS2D01G472900 chr5B 97.727 44 1 0 678 721 72094102 72094059 3.280000e-10 76.8
37 TraesCS2D01G472900 chr6D 84.615 130 19 1 595 723 32071804 32071933 8.940000e-26 128.0
38 TraesCS2D01G472900 chr6D 97.727 44 1 0 678 721 156432665 156432622 3.280000e-10 76.8
39 TraesCS2D01G472900 chr4B 86.916 107 14 0 618 724 604538839 604538945 1.500000e-23 121.0
40 TraesCS2D01G472900 chr4B 93.548 62 4 0 662 723 665211976 665211915 3.260000e-15 93.5
41 TraesCS2D01G472900 chr6B 89.091 55 6 0 667 721 10175576 10175522 5.490000e-08 69.4
42 TraesCS2D01G472900 chr1B 89.091 55 6 0 667 721 487417204 487417150 5.490000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G472900 chr2D 576459612 576462682 3070 False 5672.0 5672 100.0000 1 3071 1 chr2D.!!$F3 3070
1 TraesCS2D01G472900 chr2D 576294094 576295769 1675 False 1500.0 1500 83.6180 810 2426 1 chr2D.!!$F2 1616
2 TraesCS2D01G472900 chr2D 576580349 576581774 1425 False 1441.0 1441 85.2820 894 2311 1 chr2D.!!$F4 1417
3 TraesCS2D01G472900 chr2D 113478599 113479163 564 True 767.0 767 91.2280 1 565 1 chr2D.!!$R1 564
4 TraesCS2D01G472900 chr2D 9671927 9672498 571 False 750.0 750 90.5590 1 565 1 chr2D.!!$F1 564
5 TraesCS2D01G472900 chr2D 489573082 489573648 566 True 741.0 741 90.3850 1 565 1 chr2D.!!$R2 564
6 TraesCS2D01G472900 chr2A 714343973 714346181 2208 False 2398.0 2398 86.7110 894 3063 1 chr2A.!!$F1 2169
7 TraesCS2D01G472900 chr2A 714528778 714530192 1414 False 1421.0 1421 85.2260 795 2189 1 chr2A.!!$F2 1394
8 TraesCS2D01G472900 chrUn 328242089 328243377 1288 False 1234.0 1234 84.3080 908 2178 1 chrUn.!!$F1 1270
9 TraesCS2D01G472900 chr2B 692489398 692490686 1288 False 1234.0 1234 84.3080 908 2178 1 chr2B.!!$F1 1270
10 TraesCS2D01G472900 chr2B 692615165 692617260 2095 False 694.0 795 85.2225 936 2311 2 chr2B.!!$F2 1375
11 TraesCS2D01G472900 chr5A 704253551 704254202 651 False 802.0 802 89.7130 2448 3071 1 chr5A.!!$F1 623
12 TraesCS2D01G472900 chr5A 704123595 704124250 655 False 474.0 558 92.6040 2448 3071 2 chr5A.!!$F3 623
13 TraesCS2D01G472900 chr5A 704093246 704093901 655 False 473.0 569 92.5000 2448 3071 2 chr5A.!!$F2 623
14 TraesCS2D01G472900 chr5A 704201854 704202534 680 False 387.5 599 91.7385 2448 3071 2 chr5A.!!$F4 623
15 TraesCS2D01G472900 chr3D 475866744 475867309 565 False 773.0 773 91.3880 1 565 1 chr3D.!!$F1 564
16 TraesCS2D01G472900 chr1D 58617028 58617591 563 False 771.0 771 91.3730 1 565 1 chr1D.!!$F1 564
17 TraesCS2D01G472900 chr1D 452250016 452250576 560 False 741.0 741 90.4930 1 565 1 chr1D.!!$F2 564
18 TraesCS2D01G472900 chr5D 454029511 454030073 562 True 765.0 765 91.2430 1 565 1 chr5D.!!$R2 564
19 TraesCS2D01G472900 chr5D 544788241 544788804 563 False 760.0 760 91.0680 1 565 1 chr5D.!!$F1 564
20 TraesCS2D01G472900 chr7D 14555133 14555699 566 False 758.0 758 90.8930 1 565 1 chr7D.!!$F1 564


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 641 0.039527 CAGCCCCGTGCAAGTTAAAC 60.040 55.0 0.00 0.0 44.83 2.01 F
670 693 0.106569 AATTGATCGGGGCATCTGCA 60.107 50.0 4.33 0.0 44.36 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1970 2821 0.867746 GCAACGTGTCATGAAGCTCA 59.132 50.000 0.00 0.0 0.00 4.26 R
2252 3135 1.635487 CACCCAAAGGATCCAAGGAGA 59.365 52.381 15.82 0.0 36.73 3.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.277211 TTTCGGGAGAGTCACGGCG 62.277 63.158 4.80 4.80 44.75 6.46
43 44 4.162690 GGCGGTGCCTCTCGGAAT 62.163 66.667 0.00 0.00 46.69 3.01
259 275 2.125147 CGGGCATGCCTCTTTCGA 60.125 61.111 34.70 0.00 36.10 3.71
294 312 1.894756 TGCTCCCGGTTCGGTTTTG 60.895 57.895 0.00 0.00 46.80 2.44
346 366 6.323739 AGTTTGTCAAAACCTATCAACATGGT 59.676 34.615 0.00 0.00 45.75 3.55
425 448 2.481449 GGACGCACGGTTTGAGAGATAT 60.481 50.000 0.00 0.00 0.00 1.63
481 504 0.106918 AACTCCAGGGTTGCGACAAA 60.107 50.000 6.39 0.00 0.00 2.83
508 531 1.576451 CTGCATGTGCGCCACTTGTA 61.576 55.000 4.18 10.17 45.83 2.41
512 535 1.300971 ATGTGCGCCACTTGTAGCAG 61.301 55.000 4.18 0.00 40.53 4.24
565 588 7.122948 ACGAGTACTCCTCAATTAGTGATTTCT 59.877 37.037 17.23 0.00 40.48 2.52
566 589 7.646130 CGAGTACTCCTCAATTAGTGATTTCTC 59.354 40.741 17.23 0.00 40.48 2.87
567 590 8.367660 AGTACTCCTCAATTAGTGATTTCTCA 57.632 34.615 0.00 0.00 35.07 3.27
568 591 8.816894 AGTACTCCTCAATTAGTGATTTCTCAA 58.183 33.333 0.00 0.00 35.07 3.02
569 592 9.436957 GTACTCCTCAATTAGTGATTTCTCAAA 57.563 33.333 0.00 0.00 35.07 2.69
570 593 8.924511 ACTCCTCAATTAGTGATTTCTCAAAA 57.075 30.769 0.00 0.00 35.07 2.44
571 594 8.787852 ACTCCTCAATTAGTGATTTCTCAAAAC 58.212 33.333 0.00 0.00 35.07 2.43
572 595 8.690203 TCCTCAATTAGTGATTTCTCAAAACA 57.310 30.769 0.00 0.00 35.07 2.83
573 596 9.130661 TCCTCAATTAGTGATTTCTCAAAACAA 57.869 29.630 0.00 0.00 35.07 2.83
574 597 9.748708 CCTCAATTAGTGATTTCTCAAAACAAA 57.251 29.630 0.00 0.00 35.07 2.83
576 599 9.748708 TCAATTAGTGATTTCTCAAAACAAAGG 57.251 29.630 0.00 0.00 31.85 3.11
577 600 9.748708 CAATTAGTGATTTCTCAAAACAAAGGA 57.251 29.630 0.00 0.00 31.85 3.36
578 601 9.750125 AATTAGTGATTTCTCAAAACAAAGGAC 57.250 29.630 0.00 0.00 31.85 3.85
579 602 6.773976 AGTGATTTCTCAAAACAAAGGACA 57.226 33.333 0.00 0.00 31.85 4.02
580 603 7.169158 AGTGATTTCTCAAAACAAAGGACAA 57.831 32.000 0.00 0.00 31.85 3.18
581 604 7.610865 AGTGATTTCTCAAAACAAAGGACAAA 58.389 30.769 0.00 0.00 31.85 2.83
582 605 8.093927 AGTGATTTCTCAAAACAAAGGACAAAA 58.906 29.630 0.00 0.00 31.85 2.44
583 606 8.716909 GTGATTTCTCAAAACAAAGGACAAAAA 58.283 29.630 0.00 0.00 31.85 1.94
584 607 8.716909 TGATTTCTCAAAACAAAGGACAAAAAC 58.283 29.630 0.00 0.00 0.00 2.43
585 608 8.614469 ATTTCTCAAAACAAAGGACAAAAACA 57.386 26.923 0.00 0.00 0.00 2.83
586 609 7.650834 TTCTCAAAACAAAGGACAAAAACAG 57.349 32.000 0.00 0.00 0.00 3.16
587 610 5.637387 TCTCAAAACAAAGGACAAAAACAGC 59.363 36.000 0.00 0.00 0.00 4.40
588 611 5.546526 TCAAAACAAAGGACAAAAACAGCT 58.453 33.333 0.00 0.00 0.00 4.24
589 612 5.637387 TCAAAACAAAGGACAAAAACAGCTC 59.363 36.000 0.00 0.00 0.00 4.09
590 613 4.799564 AACAAAGGACAAAAACAGCTCA 57.200 36.364 0.00 0.00 0.00 4.26
591 614 5.343307 AACAAAGGACAAAAACAGCTCAT 57.657 34.783 0.00 0.00 0.00 2.90
592 615 4.936891 ACAAAGGACAAAAACAGCTCATC 58.063 39.130 0.00 0.00 0.00 2.92
593 616 4.646492 ACAAAGGACAAAAACAGCTCATCT 59.354 37.500 0.00 0.00 0.00 2.90
594 617 5.827797 ACAAAGGACAAAAACAGCTCATCTA 59.172 36.000 0.00 0.00 0.00 1.98
595 618 6.321181 ACAAAGGACAAAAACAGCTCATCTAA 59.679 34.615 0.00 0.00 0.00 2.10
596 619 6.959639 AAGGACAAAAACAGCTCATCTAAA 57.040 33.333 0.00 0.00 0.00 1.85
597 620 6.959639 AGGACAAAAACAGCTCATCTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
598 621 6.974965 AGGACAAAAACAGCTCATCTAAAAG 58.025 36.000 0.00 0.00 0.00 2.27
599 622 5.631096 GGACAAAAACAGCTCATCTAAAAGC 59.369 40.000 0.00 0.00 38.84 3.51
600 623 6.147864 ACAAAAACAGCTCATCTAAAAGCA 57.852 33.333 0.00 0.00 41.06 3.91
601 624 6.211515 ACAAAAACAGCTCATCTAAAAGCAG 58.788 36.000 0.00 0.00 41.06 4.24
602 625 4.431661 AAACAGCTCATCTAAAAGCAGC 57.568 40.909 0.00 0.00 41.06 5.25
603 626 2.363683 ACAGCTCATCTAAAAGCAGCC 58.636 47.619 0.00 0.00 41.06 4.85
604 627 1.674962 CAGCTCATCTAAAAGCAGCCC 59.325 52.381 0.00 0.00 41.06 5.19
605 628 1.028130 GCTCATCTAAAAGCAGCCCC 58.972 55.000 0.00 0.00 38.42 5.80
606 629 1.303309 CTCATCTAAAAGCAGCCCCG 58.697 55.000 0.00 0.00 0.00 5.73
607 630 0.618458 TCATCTAAAAGCAGCCCCGT 59.382 50.000 0.00 0.00 0.00 5.28
608 631 0.734889 CATCTAAAAGCAGCCCCGTG 59.265 55.000 0.00 0.00 0.00 4.94
609 632 1.032114 ATCTAAAAGCAGCCCCGTGC 61.032 55.000 0.00 0.00 44.35 5.34
610 633 1.971167 CTAAAAGCAGCCCCGTGCA 60.971 57.895 0.00 0.00 46.60 4.57
611 634 1.523154 CTAAAAGCAGCCCCGTGCAA 61.523 55.000 0.00 0.00 46.60 4.08
612 635 1.523154 TAAAAGCAGCCCCGTGCAAG 61.523 55.000 0.00 0.00 46.60 4.01
613 636 4.586235 AAGCAGCCCCGTGCAAGT 62.586 61.111 0.00 0.00 46.60 3.16
614 637 4.586235 AGCAGCCCCGTGCAAGTT 62.586 61.111 0.00 0.00 46.60 2.66
615 638 2.671619 GCAGCCCCGTGCAAGTTA 60.672 61.111 0.00 0.00 43.41 2.24
616 639 2.265182 GCAGCCCCGTGCAAGTTAA 61.265 57.895 0.00 0.00 43.41 2.01
617 640 1.801309 GCAGCCCCGTGCAAGTTAAA 61.801 55.000 0.00 0.00 43.41 1.52
618 641 0.039527 CAGCCCCGTGCAAGTTAAAC 60.040 55.000 0.00 0.00 44.83 2.01
619 642 0.466555 AGCCCCGTGCAAGTTAAACA 60.467 50.000 0.00 0.00 44.83 2.83
620 643 0.386113 GCCCCGTGCAAGTTAAACAA 59.614 50.000 0.00 0.00 40.77 2.83
621 644 1.601914 GCCCCGTGCAAGTTAAACAAG 60.602 52.381 0.00 0.00 40.77 3.16
622 645 1.601914 CCCCGTGCAAGTTAAACAAGC 60.602 52.381 0.00 0.00 0.00 4.01
623 646 1.601914 CCCGTGCAAGTTAAACAAGCC 60.602 52.381 0.00 0.00 0.00 4.35
624 647 1.601914 CCGTGCAAGTTAAACAAGCCC 60.602 52.381 0.00 0.00 0.00 5.19
625 648 1.066303 CGTGCAAGTTAAACAAGCCCA 59.934 47.619 0.00 0.00 0.00 5.36
626 649 2.480416 CGTGCAAGTTAAACAAGCCCAA 60.480 45.455 0.00 0.00 0.00 4.12
627 650 3.526534 GTGCAAGTTAAACAAGCCCAAA 58.473 40.909 0.00 0.00 0.00 3.28
628 651 3.555547 GTGCAAGTTAAACAAGCCCAAAG 59.444 43.478 0.00 0.00 0.00 2.77
629 652 3.449018 TGCAAGTTAAACAAGCCCAAAGA 59.551 39.130 0.00 0.00 0.00 2.52
630 653 4.081420 TGCAAGTTAAACAAGCCCAAAGAA 60.081 37.500 0.00 0.00 0.00 2.52
631 654 4.873259 GCAAGTTAAACAAGCCCAAAGAAA 59.127 37.500 0.00 0.00 0.00 2.52
632 655 5.352846 GCAAGTTAAACAAGCCCAAAGAAAA 59.647 36.000 0.00 0.00 0.00 2.29
633 656 6.128145 GCAAGTTAAACAAGCCCAAAGAAAAA 60.128 34.615 0.00 0.00 0.00 1.94
634 657 6.978343 AGTTAAACAAGCCCAAAGAAAAAC 57.022 33.333 0.00 0.00 0.00 2.43
635 658 6.468543 AGTTAAACAAGCCCAAAGAAAAACA 58.531 32.000 0.00 0.00 0.00 2.83
636 659 6.937465 AGTTAAACAAGCCCAAAGAAAAACAA 59.063 30.769 0.00 0.00 0.00 2.83
637 660 7.445707 AGTTAAACAAGCCCAAAGAAAAACAAA 59.554 29.630 0.00 0.00 0.00 2.83
638 661 6.832520 AAACAAGCCCAAAGAAAAACAAAT 57.167 29.167 0.00 0.00 0.00 2.32
639 662 5.816449 ACAAGCCCAAAGAAAAACAAATG 57.184 34.783 0.00 0.00 0.00 2.32
640 663 5.495640 ACAAGCCCAAAGAAAAACAAATGA 58.504 33.333 0.00 0.00 0.00 2.57
641 664 5.942826 ACAAGCCCAAAGAAAAACAAATGAA 59.057 32.000 0.00 0.00 0.00 2.57
642 665 6.602803 ACAAGCCCAAAGAAAAACAAATGAAT 59.397 30.769 0.00 0.00 0.00 2.57
643 666 6.622833 AGCCCAAAGAAAAACAAATGAATG 57.377 33.333 0.00 0.00 0.00 2.67
644 667 6.355747 AGCCCAAAGAAAAACAAATGAATGA 58.644 32.000 0.00 0.00 0.00 2.57
645 668 6.260714 AGCCCAAAGAAAAACAAATGAATGAC 59.739 34.615 0.00 0.00 0.00 3.06
646 669 6.038050 GCCCAAAGAAAAACAAATGAATGACA 59.962 34.615 0.00 0.00 0.00 3.58
647 670 7.414984 GCCCAAAGAAAAACAAATGAATGACAA 60.415 33.333 0.00 0.00 0.00 3.18
648 671 8.124199 CCCAAAGAAAAACAAATGAATGACAAG 58.876 33.333 0.00 0.00 0.00 3.16
649 672 8.124199 CCAAAGAAAAACAAATGAATGACAAGG 58.876 33.333 0.00 0.00 0.00 3.61
650 673 8.881743 CAAAGAAAAACAAATGAATGACAAGGA 58.118 29.630 0.00 0.00 0.00 3.36
651 674 9.447157 AAAGAAAAACAAATGAATGACAAGGAA 57.553 25.926 0.00 0.00 0.00 3.36
652 675 9.447157 AAGAAAAACAAATGAATGACAAGGAAA 57.553 25.926 0.00 0.00 0.00 3.13
653 676 9.617523 AGAAAAACAAATGAATGACAAGGAAAT 57.382 25.926 0.00 0.00 0.00 2.17
656 679 8.961294 AAACAAATGAATGACAAGGAAATTGA 57.039 26.923 0.00 0.00 41.83 2.57
657 680 9.563748 AAACAAATGAATGACAAGGAAATTGAT 57.436 25.926 0.00 0.00 41.83 2.57
658 681 8.767478 ACAAATGAATGACAAGGAAATTGATC 57.233 30.769 0.00 0.00 41.83 2.92
659 682 7.543172 ACAAATGAATGACAAGGAAATTGATCG 59.457 33.333 0.00 0.00 41.83 3.69
660 683 5.565592 TGAATGACAAGGAAATTGATCGG 57.434 39.130 0.00 0.00 41.83 4.18
661 684 4.398988 TGAATGACAAGGAAATTGATCGGG 59.601 41.667 0.00 0.00 41.83 5.14
662 685 2.722094 TGACAAGGAAATTGATCGGGG 58.278 47.619 0.00 0.00 41.83 5.73
663 686 1.405463 GACAAGGAAATTGATCGGGGC 59.595 52.381 0.00 0.00 41.83 5.80
664 687 1.272425 ACAAGGAAATTGATCGGGGCA 60.272 47.619 0.00 0.00 41.83 5.36
665 688 2.034124 CAAGGAAATTGATCGGGGCAT 58.966 47.619 0.00 0.00 41.83 4.40
666 689 1.986882 AGGAAATTGATCGGGGCATC 58.013 50.000 0.00 0.00 0.00 3.91
667 690 1.496429 AGGAAATTGATCGGGGCATCT 59.504 47.619 0.00 0.00 0.00 2.90
668 691 1.610522 GGAAATTGATCGGGGCATCTG 59.389 52.381 0.00 0.00 0.00 2.90
669 692 1.000938 GAAATTGATCGGGGCATCTGC 60.001 52.381 0.00 0.00 41.14 4.26
670 693 0.106569 AATTGATCGGGGCATCTGCA 60.107 50.000 4.33 0.00 44.36 4.41
671 694 0.536687 ATTGATCGGGGCATCTGCAG 60.537 55.000 7.63 7.63 44.36 4.41
672 695 2.281345 GATCGGGGCATCTGCAGG 60.281 66.667 15.13 0.00 44.36 4.85
673 696 2.769621 ATCGGGGCATCTGCAGGA 60.770 61.111 15.13 0.96 44.36 3.86
674 697 2.121992 GATCGGGGCATCTGCAGGAT 62.122 60.000 15.13 6.48 44.36 3.24
703 726 3.963622 GTCGACTTAGACTTCGCGA 57.036 52.632 3.71 3.71 38.09 5.87
704 727 2.238245 GTCGACTTAGACTTCGCGAA 57.762 50.000 22.01 22.01 38.09 4.70
705 728 2.167591 GTCGACTTAGACTTCGCGAAG 58.832 52.381 39.55 39.55 43.79 3.79
716 739 3.955887 CTTCGCGAAGTCTAAGTCAAC 57.044 47.619 34.97 0.00 33.87 3.18
717 740 3.566523 CTTCGCGAAGTCTAAGTCAACT 58.433 45.455 34.97 0.00 33.87 3.16
718 741 2.929960 TCGCGAAGTCTAAGTCAACTG 58.070 47.619 6.20 0.00 0.00 3.16
719 742 2.551032 TCGCGAAGTCTAAGTCAACTGA 59.449 45.455 6.20 0.00 0.00 3.41
720 743 2.911723 CGCGAAGTCTAAGTCAACTGAG 59.088 50.000 0.00 0.00 0.00 3.35
721 744 3.609644 CGCGAAGTCTAAGTCAACTGAGT 60.610 47.826 0.00 0.00 0.00 3.41
722 745 4.299978 GCGAAGTCTAAGTCAACTGAGTT 58.700 43.478 5.20 5.20 40.50 3.01
723 746 5.458891 GCGAAGTCTAAGTCAACTGAGTTA 58.541 41.667 0.00 6.78 38.53 2.24
741 764 8.932791 ACTGAGTTAGTTGTATGGAAAATTACG 58.067 33.333 0.00 0.00 35.67 3.18
742 765 8.836268 TGAGTTAGTTGTATGGAAAATTACGT 57.164 30.769 0.00 0.00 0.00 3.57
743 766 9.926158 TGAGTTAGTTGTATGGAAAATTACGTA 57.074 29.630 0.00 0.00 0.00 3.57
745 768 9.374838 AGTTAGTTGTATGGAAAATTACGTAGG 57.625 33.333 0.00 0.00 0.00 3.18
746 769 6.673154 AGTTGTATGGAAAATTACGTAGGC 57.327 37.500 0.00 0.00 0.00 3.93
747 770 5.587443 AGTTGTATGGAAAATTACGTAGGCC 59.413 40.000 0.00 0.00 0.00 5.19
748 771 5.362105 TGTATGGAAAATTACGTAGGCCT 57.638 39.130 11.78 11.78 0.00 5.19
749 772 5.747342 TGTATGGAAAATTACGTAGGCCTT 58.253 37.500 12.58 0.00 0.00 4.35
750 773 5.818857 TGTATGGAAAATTACGTAGGCCTTC 59.181 40.000 12.58 4.38 0.00 3.46
751 774 3.264104 TGGAAAATTACGTAGGCCTTCG 58.736 45.455 27.86 27.86 0.00 3.79
752 775 3.264947 GGAAAATTACGTAGGCCTTCGT 58.735 45.455 34.92 34.92 42.82 3.85
753 776 4.081752 TGGAAAATTACGTAGGCCTTCGTA 60.082 41.667 32.91 32.91 40.70 3.43
754 777 4.505556 GGAAAATTACGTAGGCCTTCGTAG 59.494 45.833 33.74 15.45 42.09 3.51
755 778 3.722728 AATTACGTAGGCCTTCGTAGG 57.277 47.619 33.74 16.23 42.09 3.18
771 794 4.485024 CGTAGGCACTATGTAGGTGTAG 57.515 50.000 0.00 0.00 45.60 2.74
772 795 3.252701 CGTAGGCACTATGTAGGTGTAGG 59.747 52.174 0.00 0.00 45.60 3.18
773 796 3.682592 AGGCACTATGTAGGTGTAGGA 57.317 47.619 0.00 0.00 36.02 2.94
774 797 4.200447 AGGCACTATGTAGGTGTAGGAT 57.800 45.455 0.00 0.00 36.02 3.24
775 798 4.557705 AGGCACTATGTAGGTGTAGGATT 58.442 43.478 0.00 0.00 36.02 3.01
776 799 5.712752 AGGCACTATGTAGGTGTAGGATTA 58.287 41.667 0.00 0.00 36.02 1.75
777 800 6.323737 AGGCACTATGTAGGTGTAGGATTAT 58.676 40.000 0.00 0.00 36.02 1.28
778 801 6.437793 AGGCACTATGTAGGTGTAGGATTATC 59.562 42.308 0.00 0.00 36.02 1.75
779 802 6.323266 GCACTATGTAGGTGTAGGATTATCG 58.677 44.000 0.00 0.00 37.07 2.92
780 803 6.072064 GCACTATGTAGGTGTAGGATTATCGT 60.072 42.308 0.00 0.00 37.07 3.73
781 804 7.523380 GCACTATGTAGGTGTAGGATTATCGTT 60.523 40.741 0.00 0.00 37.07 3.85
782 805 8.358148 CACTATGTAGGTGTAGGATTATCGTTT 58.642 37.037 0.00 0.00 0.00 3.60
783 806 8.358148 ACTATGTAGGTGTAGGATTATCGTTTG 58.642 37.037 0.00 0.00 0.00 2.93
784 807 6.534475 TGTAGGTGTAGGATTATCGTTTGT 57.466 37.500 0.00 0.00 0.00 2.83
785 808 6.938507 TGTAGGTGTAGGATTATCGTTTGTT 58.061 36.000 0.00 0.00 0.00 2.83
786 809 7.388437 TGTAGGTGTAGGATTATCGTTTGTTT 58.612 34.615 0.00 0.00 0.00 2.83
787 810 7.879160 TGTAGGTGTAGGATTATCGTTTGTTTT 59.121 33.333 0.00 0.00 0.00 2.43
788 811 7.373778 AGGTGTAGGATTATCGTTTGTTTTC 57.626 36.000 0.00 0.00 0.00 2.29
789 812 6.373495 AGGTGTAGGATTATCGTTTGTTTTCC 59.627 38.462 0.00 0.00 0.00 3.13
790 813 6.149807 GGTGTAGGATTATCGTTTGTTTTCCA 59.850 38.462 0.00 0.00 0.00 3.53
791 814 7.148137 GGTGTAGGATTATCGTTTGTTTTCCAT 60.148 37.037 0.00 0.00 0.00 3.41
792 815 7.696453 GTGTAGGATTATCGTTTGTTTTCCATG 59.304 37.037 0.00 0.00 0.00 3.66
793 816 6.207691 AGGATTATCGTTTGTTTTCCATGG 57.792 37.500 4.97 4.97 0.00 3.66
804 827 3.574396 TGTTTTCCATGGCCGATAACAAA 59.426 39.130 6.96 0.00 31.17 2.83
805 828 3.859411 TTTCCATGGCCGATAACAAAC 57.141 42.857 6.96 0.00 0.00 2.93
806 829 2.799126 TCCATGGCCGATAACAAACT 57.201 45.000 6.96 0.00 0.00 2.66
844 868 2.154798 CTCTCCAAAGTCGGACGCCA 62.155 60.000 1.89 0.00 0.00 5.69
846 881 1.079405 TCCAAAGTCGGACGCCATC 60.079 57.895 1.89 0.00 0.00 3.51
847 882 2.452813 CCAAAGTCGGACGCCATCG 61.453 63.158 1.89 0.00 42.43 3.84
855 890 1.490693 CGGACGCCATCGAAATCCTG 61.491 60.000 0.00 0.00 39.41 3.86
878 913 3.290776 CCATCGGGACTCGGATTTC 57.709 57.895 0.00 0.00 39.77 2.17
879 914 0.249911 CCATCGGGACTCGGATTTCC 60.250 60.000 0.00 0.00 39.77 3.13
883 918 2.308185 GGGACTCGGATTTCCCCTT 58.692 57.895 12.05 0.00 45.40 3.95
885 920 0.909623 GGACTCGGATTTCCCCTTCA 59.090 55.000 0.00 0.00 0.00 3.02
886 921 1.490910 GGACTCGGATTTCCCCTTCAT 59.509 52.381 0.00 0.00 0.00 2.57
888 923 2.170607 GACTCGGATTTCCCCTTCATCA 59.829 50.000 0.00 0.00 0.00 3.07
890 925 3.181450 ACTCGGATTTCCCCTTCATCATC 60.181 47.826 0.00 0.00 0.00 2.92
892 927 2.158623 CGGATTTCCCCTTCATCATCCA 60.159 50.000 0.00 0.00 31.24 3.41
905 959 5.482163 TCATCATCCAATATAAGACGCCA 57.518 39.130 0.00 0.00 0.00 5.69
942 1001 2.414161 GCTGGTGCAAATTCGGTTCTAC 60.414 50.000 0.00 0.00 39.41 2.59
989 1058 2.261671 CCCCGTCTGTTCTCCACG 59.738 66.667 0.00 0.00 0.00 4.94
1049 1118 2.096657 AGATCACGTCGAGATGTGTCAG 59.903 50.000 20.73 0.84 45.84 3.51
1051 1120 0.521735 CACGTCGAGATGTGTCAGGA 59.478 55.000 15.26 0.00 41.97 3.86
1067 1136 1.758514 GGATCTGGGAGCAGACCGA 60.759 63.158 0.00 0.00 33.58 4.69
1074 1143 2.383527 GGAGCAGACCGAAACGCTG 61.384 63.158 0.00 0.00 34.12 5.18
1090 1159 2.270923 CGCTGAATTTCGAGATGACCA 58.729 47.619 0.00 0.00 0.00 4.02
1091 1160 2.283617 CGCTGAATTTCGAGATGACCAG 59.716 50.000 8.13 8.13 0.00 4.00
1104 1173 0.764890 TGACCAGTTACCTGCAGCTT 59.235 50.000 8.66 0.00 37.38 3.74
1105 1174 1.974957 TGACCAGTTACCTGCAGCTTA 59.025 47.619 8.66 0.00 37.38 3.09
1107 1176 3.003480 GACCAGTTACCTGCAGCTTAAG 58.997 50.000 8.66 0.00 37.38 1.85
1132 1202 2.604174 GGTGTCGGCCAGTTCGTTG 61.604 63.158 2.24 0.00 0.00 4.10
1142 1212 4.736631 GTTCGTTGCTTCGCCCGC 62.737 66.667 0.00 0.00 0.00 6.13
1164 1234 1.812686 TTGAAGTCGGCGGCTACAGT 61.813 55.000 17.05 0.00 0.00 3.55
1168 1238 4.077184 TCGGCGGCTACAGTTGGG 62.077 66.667 7.21 0.00 0.00 4.12
1170 1240 2.436115 GGCGGCTACAGTTGGGAC 60.436 66.667 0.00 0.00 0.00 4.46
1175 1245 1.134401 CGGCTACAGTTGGGACATCAT 60.134 52.381 0.00 0.00 39.30 2.45
1176 1246 2.292267 GGCTACAGTTGGGACATCATG 58.708 52.381 0.00 0.00 39.30 3.07
1187 1257 1.202651 GGACATCATGTTCTACCCGGG 60.203 57.143 22.25 22.25 0.00 5.73
1188 1258 1.485066 GACATCATGTTCTACCCGGGT 59.515 52.381 32.66 32.66 0.00 5.28
1211 1281 3.062466 CGAGGAGGACTGTGGCGA 61.062 66.667 0.00 0.00 0.00 5.54
1234 1304 1.518792 GCCTCGGCGTTTCTCTACC 60.519 63.158 6.85 0.00 0.00 3.18
1237 1307 0.522915 CTCGGCGTTTCTCTACCGTC 60.523 60.000 6.85 0.00 45.76 4.79
1243 1313 1.335597 CGTTTCTCTACCGTCACAGCA 60.336 52.381 0.00 0.00 0.00 4.41
1245 1315 2.724977 TTCTCTACCGTCACAGCAAG 57.275 50.000 0.00 0.00 0.00 4.01
1289 1362 2.806856 GCTTCACGCTGAGCATCCG 61.807 63.158 4.88 0.00 35.14 4.18
1334 1407 1.970917 GCCAACTTCGATGCGGTGAG 61.971 60.000 8.57 0.00 0.00 3.51
1475 1560 2.506438 CGACGAGTCGCCCTTTCC 60.506 66.667 13.59 0.00 46.50 3.13
1501 1598 2.113774 CCAGCCAACTGTCCAGCA 59.886 61.111 0.00 0.00 42.81 4.41
1503 1600 1.656441 CAGCCAACTGTCCAGCAAC 59.344 57.895 0.00 0.00 39.22 4.17
1508 1605 0.532862 CAACTGTCCAGCAACCTCGT 60.533 55.000 0.00 0.00 0.00 4.18
1510 1607 1.669115 CTGTCCAGCAACCTCGTGG 60.669 63.158 0.99 0.99 39.83 4.94
1620 1717 1.301716 GCCGGTGTTCAGAGCTCAA 60.302 57.895 17.77 0.00 0.00 3.02
1708 1808 1.069204 TCCAGATGATGCTTCGCTACC 59.931 52.381 0.00 0.00 0.00 3.18
1839 2687 2.095869 GTGTGAAGATGAGCTGTGCAAG 60.096 50.000 0.00 0.00 0.00 4.01
1874 2722 0.804364 ACCGTTATGAGCACGTACGA 59.196 50.000 24.41 0.00 35.81 3.43
1966 2817 2.835431 CCGCCATCCTCGAGACCT 60.835 66.667 15.71 0.00 0.00 3.85
1968 2819 1.655329 CGCCATCCTCGAGACCTAC 59.345 63.158 15.71 0.00 0.00 3.18
1970 2821 1.102222 GCCATCCTCGAGACCTACGT 61.102 60.000 15.71 0.00 0.00 3.57
1996 2853 1.003839 ATGACACGTTGCCGACCAT 60.004 52.632 0.00 0.00 37.88 3.55
2093 2959 5.987347 AGATGTTGGTTTTCTTTTCTGCATG 59.013 36.000 0.00 0.00 0.00 4.06
2094 2960 3.870419 TGTTGGTTTTCTTTTCTGCATGC 59.130 39.130 11.82 11.82 0.00 4.06
2095 2961 3.815856 TGGTTTTCTTTTCTGCATGCA 57.184 38.095 21.29 21.29 0.00 3.96
2096 2962 3.456280 TGGTTTTCTTTTCTGCATGCAC 58.544 40.909 18.46 2.35 0.00 4.57
2139 3015 2.559998 AAAGTGCCTCAACGTTTGTG 57.440 45.000 0.00 0.00 0.00 3.33
2157 3033 2.548057 TGTGAGCCGAAAATGTCTGAAC 59.452 45.455 0.00 0.00 0.00 3.18
2198 3075 9.010029 ACCTTGGTATTTGTTTACAAGATACTG 57.990 33.333 17.39 12.21 37.15 2.74
2231 3114 9.087424 GGTTTATGTTTGCCTTCTTATGAAATC 57.913 33.333 0.00 0.00 0.00 2.17
2241 3124 7.137426 GCCTTCTTATGAAATCTGCATACAAG 58.863 38.462 0.00 0.00 0.00 3.16
2243 3126 6.624352 TCTTATGAAATCTGCATACAAGCC 57.376 37.500 0.00 0.00 0.00 4.35
2252 3135 3.196039 TCTGCATACAAGCCATTGCATTT 59.804 39.130 0.00 0.00 43.51 2.32
2426 3313 3.434637 CACACAACAAAAGAACCCGAAG 58.565 45.455 0.00 0.00 0.00 3.79
2437 3324 2.236146 AGAACCCGAAGATGTACATGCA 59.764 45.455 14.43 0.00 0.00 3.96
2535 3422 1.582502 CTAAACGTGCGGAGATTCGTC 59.417 52.381 0.00 0.00 35.49 4.20
2546 3433 2.602878 GAGATTCGTCCGTGCTGTTTA 58.397 47.619 0.00 0.00 0.00 2.01
2689 3607 2.612221 GCACTACCCAGTTACCACAGTC 60.612 54.545 0.00 0.00 30.46 3.51
2693 3611 2.062636 ACCCAGTTACCACAGTCCATT 58.937 47.619 0.00 0.00 0.00 3.16
2694 3612 2.224769 ACCCAGTTACCACAGTCCATTG 60.225 50.000 0.00 0.00 0.00 2.82
2810 3767 7.040340 TCACTCTCGTGACTAATCTTTCTTTCT 60.040 37.037 0.00 0.00 44.85 2.52
2811 3768 7.596995 CACTCTCGTGACTAATCTTTCTTTCTT 59.403 37.037 0.00 0.00 43.97 2.52
2812 3769 8.145122 ACTCTCGTGACTAATCTTTCTTTCTTT 58.855 33.333 0.00 0.00 0.00 2.52
2813 3770 8.522178 TCTCGTGACTAATCTTTCTTTCTTTC 57.478 34.615 0.00 0.00 0.00 2.62
2814 3771 8.361139 TCTCGTGACTAATCTTTCTTTCTTTCT 58.639 33.333 0.00 0.00 0.00 2.52
3063 4021 4.084900 GCAAGTTTTCAAAAGGAATCGCAG 60.085 41.667 0.00 0.00 34.91 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
368 388 1.375396 CACCGTTGGATTCCTCGCA 60.375 57.895 3.95 0.00 0.00 5.10
468 491 2.244000 CGTCATTTGTCGCAACCCT 58.756 52.632 0.00 0.00 0.00 4.34
481 504 4.170062 GCACATGCAGCGCGTCAT 62.170 61.111 8.43 10.86 41.59 3.06
508 531 1.353694 ACTCCAATTTCTCTGGCTGCT 59.646 47.619 0.00 0.00 33.63 4.24
512 535 3.883669 AGATCACTCCAATTTCTCTGGC 58.116 45.455 0.00 0.00 33.63 4.85
565 588 5.546526 AGCTGTTTTTGTCCTTTGTTTTGA 58.453 33.333 0.00 0.00 0.00 2.69
566 589 5.407995 TGAGCTGTTTTTGTCCTTTGTTTTG 59.592 36.000 0.00 0.00 0.00 2.44
567 590 5.546526 TGAGCTGTTTTTGTCCTTTGTTTT 58.453 33.333 0.00 0.00 0.00 2.43
568 591 5.146010 TGAGCTGTTTTTGTCCTTTGTTT 57.854 34.783 0.00 0.00 0.00 2.83
569 592 4.799564 TGAGCTGTTTTTGTCCTTTGTT 57.200 36.364 0.00 0.00 0.00 2.83
570 593 4.646492 AGATGAGCTGTTTTTGTCCTTTGT 59.354 37.500 0.00 0.00 0.00 2.83
571 594 5.192327 AGATGAGCTGTTTTTGTCCTTTG 57.808 39.130 0.00 0.00 0.00 2.77
572 595 6.959639 TTAGATGAGCTGTTTTTGTCCTTT 57.040 33.333 0.00 0.00 0.00 3.11
573 596 6.959639 TTTAGATGAGCTGTTTTTGTCCTT 57.040 33.333 0.00 0.00 0.00 3.36
574 597 6.515696 GCTTTTAGATGAGCTGTTTTTGTCCT 60.516 38.462 0.00 0.00 36.01 3.85
575 598 5.631096 GCTTTTAGATGAGCTGTTTTTGTCC 59.369 40.000 0.00 0.00 36.01 4.02
576 599 6.208644 TGCTTTTAGATGAGCTGTTTTTGTC 58.791 36.000 0.00 0.00 39.60 3.18
577 600 6.147864 TGCTTTTAGATGAGCTGTTTTTGT 57.852 33.333 0.00 0.00 39.60 2.83
578 601 5.118203 GCTGCTTTTAGATGAGCTGTTTTTG 59.882 40.000 0.00 0.00 39.25 2.44
579 602 5.225642 GCTGCTTTTAGATGAGCTGTTTTT 58.774 37.500 0.00 0.00 39.25 1.94
580 603 4.321527 GGCTGCTTTTAGATGAGCTGTTTT 60.322 41.667 0.00 0.00 39.25 2.43
581 604 3.192212 GGCTGCTTTTAGATGAGCTGTTT 59.808 43.478 0.00 0.00 39.25 2.83
582 605 2.751806 GGCTGCTTTTAGATGAGCTGTT 59.248 45.455 0.00 0.00 39.25 3.16
583 606 2.363683 GGCTGCTTTTAGATGAGCTGT 58.636 47.619 0.00 0.00 39.25 4.40
584 607 1.674962 GGGCTGCTTTTAGATGAGCTG 59.325 52.381 0.00 0.00 39.60 4.24
585 608 1.409381 GGGGCTGCTTTTAGATGAGCT 60.409 52.381 0.00 0.00 39.60 4.09
586 609 1.028130 GGGGCTGCTTTTAGATGAGC 58.972 55.000 0.00 0.00 39.33 4.26
587 610 1.303309 CGGGGCTGCTTTTAGATGAG 58.697 55.000 0.00 0.00 0.00 2.90
588 611 0.618458 ACGGGGCTGCTTTTAGATGA 59.382 50.000 0.00 0.00 0.00 2.92
589 612 0.734889 CACGGGGCTGCTTTTAGATG 59.265 55.000 0.00 0.00 0.00 2.90
590 613 1.032114 GCACGGGGCTGCTTTTAGAT 61.032 55.000 0.00 0.00 40.25 1.98
591 614 1.674322 GCACGGGGCTGCTTTTAGA 60.674 57.895 0.00 0.00 40.25 2.10
592 615 1.523154 TTGCACGGGGCTGCTTTTAG 61.523 55.000 2.92 0.00 45.15 1.85
593 616 1.523154 CTTGCACGGGGCTGCTTTTA 61.523 55.000 2.92 0.00 45.15 1.52
594 617 2.837291 TTGCACGGGGCTGCTTTT 60.837 55.556 2.92 0.00 45.15 2.27
595 618 3.297620 CTTGCACGGGGCTGCTTT 61.298 61.111 2.92 0.00 45.15 3.51
596 619 2.690653 TAACTTGCACGGGGCTGCTT 62.691 55.000 2.92 0.00 45.15 3.91
597 620 2.690653 TTAACTTGCACGGGGCTGCT 62.691 55.000 2.92 0.00 45.15 4.24
598 621 1.801309 TTTAACTTGCACGGGGCTGC 61.801 55.000 2.92 0.00 45.15 5.25
599 622 0.039527 GTTTAACTTGCACGGGGCTG 60.040 55.000 2.92 0.00 45.15 4.85
600 623 0.466555 TGTTTAACTTGCACGGGGCT 60.467 50.000 2.92 0.00 45.15 5.19
601 624 0.386113 TTGTTTAACTTGCACGGGGC 59.614 50.000 0.00 0.00 45.13 5.80
602 625 1.601914 GCTTGTTTAACTTGCACGGGG 60.602 52.381 0.00 0.00 0.00 5.73
603 626 1.601914 GGCTTGTTTAACTTGCACGGG 60.602 52.381 12.69 0.00 0.00 5.28
604 627 1.601914 GGGCTTGTTTAACTTGCACGG 60.602 52.381 12.69 0.00 0.00 4.94
605 628 1.066303 TGGGCTTGTTTAACTTGCACG 59.934 47.619 12.69 0.00 0.00 5.34
606 629 2.880963 TGGGCTTGTTTAACTTGCAC 57.119 45.000 12.69 10.36 0.00 4.57
607 630 3.449018 TCTTTGGGCTTGTTTAACTTGCA 59.551 39.130 12.69 0.00 0.00 4.08
608 631 4.053469 TCTTTGGGCTTGTTTAACTTGC 57.947 40.909 0.00 0.80 0.00 4.01
609 632 6.976636 TTTTCTTTGGGCTTGTTTAACTTG 57.023 33.333 0.00 0.00 0.00 3.16
610 633 6.937465 TGTTTTTCTTTGGGCTTGTTTAACTT 59.063 30.769 0.00 0.00 0.00 2.66
611 634 6.468543 TGTTTTTCTTTGGGCTTGTTTAACT 58.531 32.000 0.00 0.00 0.00 2.24
612 635 6.729391 TGTTTTTCTTTGGGCTTGTTTAAC 57.271 33.333 0.00 0.00 0.00 2.01
613 636 7.745620 TTTGTTTTTCTTTGGGCTTGTTTAA 57.254 28.000 0.00 0.00 0.00 1.52
614 637 7.607991 TCATTTGTTTTTCTTTGGGCTTGTTTA 59.392 29.630 0.00 0.00 0.00 2.01
615 638 6.432472 TCATTTGTTTTTCTTTGGGCTTGTTT 59.568 30.769 0.00 0.00 0.00 2.83
616 639 5.942826 TCATTTGTTTTTCTTTGGGCTTGTT 59.057 32.000 0.00 0.00 0.00 2.83
617 640 5.495640 TCATTTGTTTTTCTTTGGGCTTGT 58.504 33.333 0.00 0.00 0.00 3.16
618 641 6.434018 TTCATTTGTTTTTCTTTGGGCTTG 57.566 33.333 0.00 0.00 0.00 4.01
619 642 6.827762 TCATTCATTTGTTTTTCTTTGGGCTT 59.172 30.769 0.00 0.00 0.00 4.35
620 643 6.260714 GTCATTCATTTGTTTTTCTTTGGGCT 59.739 34.615 0.00 0.00 0.00 5.19
621 644 6.038050 TGTCATTCATTTGTTTTTCTTTGGGC 59.962 34.615 0.00 0.00 0.00 5.36
622 645 7.551035 TGTCATTCATTTGTTTTTCTTTGGG 57.449 32.000 0.00 0.00 0.00 4.12
623 646 8.124199 CCTTGTCATTCATTTGTTTTTCTTTGG 58.876 33.333 0.00 0.00 0.00 3.28
624 647 8.881743 TCCTTGTCATTCATTTGTTTTTCTTTG 58.118 29.630 0.00 0.00 0.00 2.77
625 648 9.447157 TTCCTTGTCATTCATTTGTTTTTCTTT 57.553 25.926 0.00 0.00 0.00 2.52
626 649 9.447157 TTTCCTTGTCATTCATTTGTTTTTCTT 57.553 25.926 0.00 0.00 0.00 2.52
627 650 9.617523 ATTTCCTTGTCATTCATTTGTTTTTCT 57.382 25.926 0.00 0.00 0.00 2.52
630 653 9.393512 TCAATTTCCTTGTCATTCATTTGTTTT 57.606 25.926 0.00 0.00 36.20 2.43
631 654 8.961294 TCAATTTCCTTGTCATTCATTTGTTT 57.039 26.923 0.00 0.00 36.20 2.83
632 655 9.211485 GATCAATTTCCTTGTCATTCATTTGTT 57.789 29.630 0.00 0.00 36.20 2.83
633 656 7.543172 CGATCAATTTCCTTGTCATTCATTTGT 59.457 33.333 0.00 0.00 36.20 2.83
634 657 7.009815 CCGATCAATTTCCTTGTCATTCATTTG 59.990 37.037 0.00 0.00 36.20 2.32
635 658 7.037438 CCGATCAATTTCCTTGTCATTCATTT 58.963 34.615 0.00 0.00 36.20 2.32
636 659 6.406177 CCCGATCAATTTCCTTGTCATTCATT 60.406 38.462 0.00 0.00 36.20 2.57
637 660 5.068198 CCCGATCAATTTCCTTGTCATTCAT 59.932 40.000 0.00 0.00 36.20 2.57
638 661 4.398988 CCCGATCAATTTCCTTGTCATTCA 59.601 41.667 0.00 0.00 36.20 2.57
639 662 4.202050 CCCCGATCAATTTCCTTGTCATTC 60.202 45.833 0.00 0.00 36.20 2.67
640 663 3.701040 CCCCGATCAATTTCCTTGTCATT 59.299 43.478 0.00 0.00 36.20 2.57
641 664 3.290710 CCCCGATCAATTTCCTTGTCAT 58.709 45.455 0.00 0.00 36.20 3.06
642 665 2.722094 CCCCGATCAATTTCCTTGTCA 58.278 47.619 0.00 0.00 36.20 3.58
643 666 1.405463 GCCCCGATCAATTTCCTTGTC 59.595 52.381 0.00 0.00 36.20 3.18
644 667 1.272425 TGCCCCGATCAATTTCCTTGT 60.272 47.619 0.00 0.00 36.20 3.16
645 668 1.473258 TGCCCCGATCAATTTCCTTG 58.527 50.000 0.00 0.00 36.09 3.61
646 669 2.091665 AGATGCCCCGATCAATTTCCTT 60.092 45.455 0.00 0.00 0.00 3.36
647 670 1.496429 AGATGCCCCGATCAATTTCCT 59.504 47.619 0.00 0.00 0.00 3.36
648 671 1.610522 CAGATGCCCCGATCAATTTCC 59.389 52.381 0.00 0.00 0.00 3.13
649 672 1.000938 GCAGATGCCCCGATCAATTTC 60.001 52.381 0.00 0.00 34.31 2.17
650 673 1.035139 GCAGATGCCCCGATCAATTT 58.965 50.000 0.00 0.00 34.31 1.82
651 674 0.106569 TGCAGATGCCCCGATCAATT 60.107 50.000 1.72 0.00 41.18 2.32
652 675 0.536687 CTGCAGATGCCCCGATCAAT 60.537 55.000 8.42 0.00 41.18 2.57
653 676 1.153107 CTGCAGATGCCCCGATCAA 60.153 57.895 8.42 0.00 41.18 2.57
654 677 2.507452 CTGCAGATGCCCCGATCA 59.493 61.111 8.42 0.00 41.18 2.92
655 678 2.121992 ATCCTGCAGATGCCCCGATC 62.122 60.000 17.39 0.00 41.18 3.69
656 679 2.152058 ATCCTGCAGATGCCCCGAT 61.152 57.895 17.39 4.29 41.18 4.18
657 680 2.769621 ATCCTGCAGATGCCCCGA 60.770 61.111 17.39 1.60 41.18 5.14
658 681 2.593725 CATCCTGCAGATGCCCCG 60.594 66.667 17.39 0.00 45.76 5.73
677 700 4.142881 CGAAGTCTAAGTCGACTGATGTCA 60.143 45.833 20.85 0.00 43.14 3.58
678 701 4.336101 CGAAGTCTAAGTCGACTGATGTC 58.664 47.826 20.85 12.43 43.14 3.06
679 702 3.426426 GCGAAGTCTAAGTCGACTGATGT 60.426 47.826 20.85 5.70 43.14 3.06
680 703 3.102276 GCGAAGTCTAAGTCGACTGATG 58.898 50.000 20.85 12.23 43.14 3.07
681 704 2.223066 CGCGAAGTCTAAGTCGACTGAT 60.223 50.000 20.85 6.95 43.14 2.90
682 705 1.128136 CGCGAAGTCTAAGTCGACTGA 59.872 52.381 20.85 11.31 43.14 3.41
683 706 1.128136 TCGCGAAGTCTAAGTCGACTG 59.872 52.381 20.85 7.79 43.14 3.51
684 707 1.436600 TCGCGAAGTCTAAGTCGACT 58.563 50.000 13.58 13.58 45.73 4.18
685 708 2.167591 CTTCGCGAAGTCTAAGTCGAC 58.832 52.381 34.97 7.70 39.64 4.20
686 709 2.522372 CTTCGCGAAGTCTAAGTCGA 57.478 50.000 34.97 4.60 39.64 4.20
696 719 3.362237 CAGTTGACTTAGACTTCGCGAAG 59.638 47.826 39.55 39.55 43.79 3.79
697 720 3.004002 TCAGTTGACTTAGACTTCGCGAA 59.996 43.478 22.01 22.01 0.00 4.70
698 721 2.551032 TCAGTTGACTTAGACTTCGCGA 59.449 45.455 3.71 3.71 0.00 5.87
699 722 2.911723 CTCAGTTGACTTAGACTTCGCG 59.088 50.000 0.00 0.00 0.00 5.87
700 723 3.903360 ACTCAGTTGACTTAGACTTCGC 58.097 45.455 0.00 0.00 0.00 4.70
701 724 6.670233 ACTAACTCAGTTGACTTAGACTTCG 58.330 40.000 0.00 0.00 31.59 3.79
715 738 8.932791 CGTAATTTTCCATACAACTAACTCAGT 58.067 33.333 0.00 0.00 40.05 3.41
716 739 8.932791 ACGTAATTTTCCATACAACTAACTCAG 58.067 33.333 0.00 0.00 0.00 3.35
717 740 8.836268 ACGTAATTTTCCATACAACTAACTCA 57.164 30.769 0.00 0.00 0.00 3.41
719 742 9.374838 CCTACGTAATTTTCCATACAACTAACT 57.625 33.333 0.00 0.00 0.00 2.24
720 743 8.118607 GCCTACGTAATTTTCCATACAACTAAC 58.881 37.037 0.00 0.00 0.00 2.34
721 744 7.280652 GGCCTACGTAATTTTCCATACAACTAA 59.719 37.037 0.00 0.00 0.00 2.24
722 745 6.762661 GGCCTACGTAATTTTCCATACAACTA 59.237 38.462 0.00 0.00 0.00 2.24
723 746 5.587443 GGCCTACGTAATTTTCCATACAACT 59.413 40.000 0.00 0.00 0.00 3.16
724 747 5.587443 AGGCCTACGTAATTTTCCATACAAC 59.413 40.000 1.29 0.00 0.00 3.32
725 748 5.747342 AGGCCTACGTAATTTTCCATACAA 58.253 37.500 1.29 0.00 0.00 2.41
726 749 5.362105 AGGCCTACGTAATTTTCCATACA 57.638 39.130 1.29 0.00 0.00 2.29
727 750 5.050567 CGAAGGCCTACGTAATTTTCCATAC 60.051 44.000 5.16 0.00 0.00 2.39
728 751 5.051816 CGAAGGCCTACGTAATTTTCCATA 58.948 41.667 5.16 0.00 0.00 2.74
729 752 3.875134 CGAAGGCCTACGTAATTTTCCAT 59.125 43.478 5.16 0.00 0.00 3.41
730 753 3.264104 CGAAGGCCTACGTAATTTTCCA 58.736 45.455 5.16 0.00 0.00 3.53
731 754 3.264947 ACGAAGGCCTACGTAATTTTCC 58.735 45.455 5.16 0.00 40.92 3.13
732 755 4.505556 CCTACGAAGGCCTACGTAATTTTC 59.494 45.833 5.16 0.00 42.77 2.29
733 756 4.436332 CCTACGAAGGCCTACGTAATTTT 58.564 43.478 5.16 0.00 42.77 1.82
734 757 4.050852 CCTACGAAGGCCTACGTAATTT 57.949 45.455 5.16 0.00 42.77 1.82
735 758 3.722728 CCTACGAAGGCCTACGTAATT 57.277 47.619 5.16 0.00 42.77 1.40
746 769 2.957006 ACCTACATAGTGCCTACGAAGG 59.043 50.000 0.00 0.00 46.76 3.46
747 770 3.380637 ACACCTACATAGTGCCTACGAAG 59.619 47.826 0.00 0.00 38.87 3.79
748 771 3.359033 ACACCTACATAGTGCCTACGAA 58.641 45.455 0.00 0.00 38.87 3.85
749 772 3.008835 ACACCTACATAGTGCCTACGA 57.991 47.619 0.00 0.00 38.87 3.43
750 773 3.252701 CCTACACCTACATAGTGCCTACG 59.747 52.174 0.00 0.00 38.87 3.51
751 774 4.467769 TCCTACACCTACATAGTGCCTAC 58.532 47.826 0.00 0.00 38.87 3.18
752 775 4.801521 TCCTACACCTACATAGTGCCTA 57.198 45.455 0.00 0.00 38.87 3.93
753 776 3.682592 TCCTACACCTACATAGTGCCT 57.317 47.619 0.00 0.00 38.87 4.75
754 777 4.957684 AATCCTACACCTACATAGTGCC 57.042 45.455 0.00 0.00 38.87 5.01
755 778 6.072064 ACGATAATCCTACACCTACATAGTGC 60.072 42.308 0.00 0.00 38.87 4.40
756 779 7.450124 ACGATAATCCTACACCTACATAGTG 57.550 40.000 0.00 0.00 41.15 2.74
757 780 8.358148 CAAACGATAATCCTACACCTACATAGT 58.642 37.037 0.00 0.00 0.00 2.12
758 781 8.358148 ACAAACGATAATCCTACACCTACATAG 58.642 37.037 0.00 0.00 0.00 2.23
759 782 8.241497 ACAAACGATAATCCTACACCTACATA 57.759 34.615 0.00 0.00 0.00 2.29
760 783 7.120923 ACAAACGATAATCCTACACCTACAT 57.879 36.000 0.00 0.00 0.00 2.29
761 784 6.534475 ACAAACGATAATCCTACACCTACA 57.466 37.500 0.00 0.00 0.00 2.74
762 785 7.838771 AAACAAACGATAATCCTACACCTAC 57.161 36.000 0.00 0.00 0.00 3.18
763 786 7.550196 GGAAAACAAACGATAATCCTACACCTA 59.450 37.037 0.00 0.00 0.00 3.08
764 787 6.373495 GGAAAACAAACGATAATCCTACACCT 59.627 38.462 0.00 0.00 0.00 4.00
765 788 6.149807 TGGAAAACAAACGATAATCCTACACC 59.850 38.462 0.00 0.00 0.00 4.16
766 789 7.136289 TGGAAAACAAACGATAATCCTACAC 57.864 36.000 0.00 0.00 0.00 2.90
767 790 7.148154 CCATGGAAAACAAACGATAATCCTACA 60.148 37.037 5.56 0.00 0.00 2.74
768 791 7.193595 CCATGGAAAACAAACGATAATCCTAC 58.806 38.462 5.56 0.00 0.00 3.18
769 792 6.183360 GCCATGGAAAACAAACGATAATCCTA 60.183 38.462 18.40 0.00 0.00 2.94
770 793 5.394115 GCCATGGAAAACAAACGATAATCCT 60.394 40.000 18.40 0.00 0.00 3.24
771 794 4.803613 GCCATGGAAAACAAACGATAATCC 59.196 41.667 18.40 0.00 0.00 3.01
772 795 4.803613 GGCCATGGAAAACAAACGATAATC 59.196 41.667 18.40 0.00 0.00 1.75
773 796 4.676723 CGGCCATGGAAAACAAACGATAAT 60.677 41.667 18.40 0.00 0.00 1.28
774 797 3.366476 CGGCCATGGAAAACAAACGATAA 60.366 43.478 18.40 0.00 0.00 1.75
775 798 2.162608 CGGCCATGGAAAACAAACGATA 59.837 45.455 18.40 0.00 0.00 2.92
776 799 1.067915 CGGCCATGGAAAACAAACGAT 60.068 47.619 18.40 0.00 0.00 3.73
777 800 0.312416 CGGCCATGGAAAACAAACGA 59.688 50.000 18.40 0.00 0.00 3.85
778 801 0.312416 TCGGCCATGGAAAACAAACG 59.688 50.000 18.40 6.10 0.00 3.60
779 802 2.741759 ATCGGCCATGGAAAACAAAC 57.258 45.000 18.40 0.00 0.00 2.93
780 803 3.574396 TGTTATCGGCCATGGAAAACAAA 59.426 39.130 18.40 0.00 0.00 2.83
781 804 3.157881 TGTTATCGGCCATGGAAAACAA 58.842 40.909 18.40 0.00 0.00 2.83
782 805 2.796557 TGTTATCGGCCATGGAAAACA 58.203 42.857 18.40 13.87 0.00 2.83
783 806 3.859411 TTGTTATCGGCCATGGAAAAC 57.141 42.857 18.40 11.46 0.00 2.43
784 807 3.829601 AGTTTGTTATCGGCCATGGAAAA 59.170 39.130 18.40 0.00 0.00 2.29
785 808 3.426615 AGTTTGTTATCGGCCATGGAAA 58.573 40.909 18.40 0.86 0.00 3.13
786 809 3.080300 AGTTTGTTATCGGCCATGGAA 57.920 42.857 18.40 0.00 0.00 3.53
787 810 2.799126 AGTTTGTTATCGGCCATGGA 57.201 45.000 18.40 0.00 0.00 3.41
788 811 3.016736 AGAAGTTTGTTATCGGCCATGG 58.983 45.455 7.63 7.63 0.00 3.66
789 812 4.438744 GGAAGAAGTTTGTTATCGGCCATG 60.439 45.833 2.24 0.00 0.00 3.66
790 813 3.694566 GGAAGAAGTTTGTTATCGGCCAT 59.305 43.478 2.24 0.00 0.00 4.40
791 814 3.078837 GGAAGAAGTTTGTTATCGGCCA 58.921 45.455 2.24 0.00 0.00 5.36
792 815 3.344515 AGGAAGAAGTTTGTTATCGGCC 58.655 45.455 0.00 0.00 0.00 6.13
793 816 5.181433 AGAAAGGAAGAAGTTTGTTATCGGC 59.819 40.000 0.00 0.00 0.00 5.54
804 827 5.247337 AGAGGAATCGAAGAAAGGAAGAAGT 59.753 40.000 0.00 0.00 43.58 3.01
805 828 5.729510 AGAGGAATCGAAGAAAGGAAGAAG 58.270 41.667 0.00 0.00 43.58 2.85
806 829 5.337652 GGAGAGGAATCGAAGAAAGGAAGAA 60.338 44.000 0.00 0.00 43.58 2.52
844 868 1.072965 GATGGGGAGCAGGATTTCGAT 59.927 52.381 0.00 0.00 0.00 3.59
846 881 0.882042 CGATGGGGAGCAGGATTTCG 60.882 60.000 0.00 0.00 0.00 3.46
847 882 0.536006 CCGATGGGGAGCAGGATTTC 60.536 60.000 0.00 0.00 38.47 2.17
872 907 3.600448 TGGATGATGAAGGGGAAATCC 57.400 47.619 0.00 0.00 35.23 3.01
873 908 8.884124 TTATATTGGATGATGAAGGGGAAATC 57.116 34.615 0.00 0.00 0.00 2.17
874 909 8.681584 TCTTATATTGGATGATGAAGGGGAAAT 58.318 33.333 0.00 0.00 0.00 2.17
875 910 7.944554 GTCTTATATTGGATGATGAAGGGGAAA 59.055 37.037 0.00 0.00 0.00 3.13
877 912 6.295859 CGTCTTATATTGGATGATGAAGGGGA 60.296 42.308 0.00 0.00 0.00 4.81
878 913 5.877012 CGTCTTATATTGGATGATGAAGGGG 59.123 44.000 0.00 0.00 0.00 4.79
879 914 5.352569 GCGTCTTATATTGGATGATGAAGGG 59.647 44.000 0.00 0.00 0.00 3.95
880 915 5.352569 GGCGTCTTATATTGGATGATGAAGG 59.647 44.000 0.00 0.00 0.00 3.46
881 916 5.934043 TGGCGTCTTATATTGGATGATGAAG 59.066 40.000 0.00 0.00 0.00 3.02
883 918 5.482163 TGGCGTCTTATATTGGATGATGA 57.518 39.130 0.00 0.00 0.00 2.92
885 920 5.221925 ACCTTGGCGTCTTATATTGGATGAT 60.222 40.000 0.00 0.00 0.00 2.45
886 921 4.102524 ACCTTGGCGTCTTATATTGGATGA 59.897 41.667 0.00 0.00 0.00 2.92
888 923 4.706842 ACCTTGGCGTCTTATATTGGAT 57.293 40.909 0.00 0.00 0.00 3.41
890 925 3.739300 CGTACCTTGGCGTCTTATATTGG 59.261 47.826 0.00 0.00 0.00 3.16
892 927 3.385755 ACCGTACCTTGGCGTCTTATATT 59.614 43.478 0.00 0.00 0.00 1.28
905 959 1.098050 CAGCCTACGTACCGTACCTT 58.902 55.000 3.04 0.00 41.54 3.50
920 979 0.388520 GAACCGAATTTGCACCAGCC 60.389 55.000 0.00 0.00 41.13 4.85
923 982 3.134574 AGTAGAACCGAATTTGCACCA 57.865 42.857 0.00 0.00 0.00 4.17
971 1040 2.047179 GTGGAGAACAGACGGGGC 60.047 66.667 0.00 0.00 0.00 5.80
1005 1074 0.601311 GTGAGGTCGAGCTGCTGTTT 60.601 55.000 23.97 0.00 0.00 2.83
1067 1136 3.125316 GGTCATCTCGAAATTCAGCGTTT 59.875 43.478 0.00 0.00 0.00 3.60
1074 1143 5.720261 GGTAACTGGTCATCTCGAAATTC 57.280 43.478 0.00 0.00 0.00 2.17
1091 1160 1.095600 GCCCTTAAGCTGCAGGTAAC 58.904 55.000 20.51 0.00 0.00 2.50
1104 1173 2.994699 CCGACACCCATGCCCTTA 59.005 61.111 0.00 0.00 0.00 2.69
1105 1174 4.740822 GCCGACACCCATGCCCTT 62.741 66.667 0.00 0.00 0.00 3.95
1142 1212 3.014085 TAGCCGCCGACTTCAAGGG 62.014 63.158 0.00 0.00 0.00 3.95
1146 1216 1.812686 AACTGTAGCCGCCGACTTCA 61.813 55.000 0.00 0.00 0.00 3.02
1164 1234 2.093181 CGGGTAGAACATGATGTCCCAA 60.093 50.000 17.21 0.00 32.00 4.12
1168 1238 1.485066 ACCCGGGTAGAACATGATGTC 59.515 52.381 29.13 0.00 0.00 3.06
1170 1240 1.475034 CCACCCGGGTAGAACATGATG 60.475 57.143 29.72 9.88 0.00 3.07
1193 1263 4.135153 CGCCACAGTCCTCCTCGG 62.135 72.222 0.00 0.00 0.00 4.63
1221 1291 0.038892 TGTGACGGTAGAGAAACGCC 60.039 55.000 0.00 0.00 0.00 5.68
1228 1298 0.888619 TCCTTGCTGTGACGGTAGAG 59.111 55.000 0.00 0.00 0.00 2.43
1231 1301 0.032952 GTGTCCTTGCTGTGACGGTA 59.967 55.000 0.00 0.00 34.18 4.02
1234 1304 2.310233 CCGTGTCCTTGCTGTGACG 61.310 63.158 0.00 0.00 34.18 4.35
1237 1307 1.021390 GGATCCGTGTCCTTGCTGTG 61.021 60.000 0.00 0.00 35.32 3.66
1243 1313 2.284405 ACCCGGATCCGTGTCCTT 60.284 61.111 31.22 2.23 36.07 3.36
1245 1315 3.387947 ACACCCGGATCCGTGTCC 61.388 66.667 31.22 0.00 37.81 4.02
1259 1332 2.280797 TGAAGCTGCCGGTCACAC 60.281 61.111 1.90 0.00 0.00 3.82
1272 1345 1.144565 CTCGGATGCTCAGCGTGAAG 61.145 60.000 0.00 0.00 0.00 3.02
1289 1362 0.326264 TGCCTGGCTCCTTTTCTCTC 59.674 55.000 21.03 0.00 0.00 3.20
1319 1392 2.125512 GCCTCACCGCATCGAAGT 60.126 61.111 0.00 0.00 0.00 3.01
1362 1441 2.037053 CACGAATTTGTGGTGGCCA 58.963 52.632 16.91 0.00 36.20 5.36
1470 1555 2.437359 CTGGGCAGCTCCGGAAAG 60.437 66.667 5.23 0.00 35.18 2.62
1501 1598 2.045926 GAGCATGCCCACGAGGTT 60.046 61.111 15.66 0.00 38.26 3.50
1503 1600 4.147449 TCGAGCATGCCCACGAGG 62.147 66.667 21.87 0.00 39.47 4.63
1508 1605 4.147449 CGTCCTCGAGCATGCCCA 62.147 66.667 15.66 0.00 39.71 5.36
1510 1607 4.899239 CCCGTCCTCGAGCATGCC 62.899 72.222 15.66 4.99 39.71 4.40
1708 1808 2.030946 GCGGCAGCTTGTCTGTATAAAG 59.969 50.000 0.00 0.00 44.66 1.85
1839 2687 1.664965 GGTCGCGGCATCCATAGTC 60.665 63.158 14.93 0.00 0.00 2.59
1966 2817 1.977188 CGTGTCATGAAGCTCACGTA 58.023 50.000 21.82 0.00 45.26 3.57
1970 2821 0.867746 GCAACGTGTCATGAAGCTCA 59.132 50.000 0.00 0.00 0.00 4.26
2012 2869 6.091986 GTGATCAACTTCTTCCTCTTCATGAC 59.908 42.308 0.00 0.00 0.00 3.06
2087 2945 4.449405 TCAAAATGTTCATTGTGCATGCAG 59.551 37.500 23.41 9.73 32.13 4.41
2093 2959 5.927954 ATGGTTCAAAATGTTCATTGTGC 57.072 34.783 9.97 0.00 0.00 4.57
2094 2960 6.482641 TGGAATGGTTCAAAATGTTCATTGTG 59.517 34.615 8.85 8.85 0.00 3.33
2095 2961 6.590068 TGGAATGGTTCAAAATGTTCATTGT 58.410 32.000 0.00 0.00 0.00 2.71
2096 2962 7.493743 TTGGAATGGTTCAAAATGTTCATTG 57.506 32.000 0.00 0.00 0.00 2.82
2198 3075 2.897326 AGGCAAACATAAACCTTCCACC 59.103 45.455 0.00 0.00 0.00 4.61
2241 3124 1.826720 TCCAAGGAGAAATGCAATGGC 59.173 47.619 0.00 0.00 41.68 4.40
2243 3126 3.958798 AGGATCCAAGGAGAAATGCAATG 59.041 43.478 15.82 0.00 0.00 2.82
2252 3135 1.635487 CACCCAAAGGATCCAAGGAGA 59.365 52.381 15.82 0.00 36.73 3.71
2426 3313 8.023128 ACTGTTCTTTAAATGTGCATGTACATC 58.977 33.333 26.65 13.71 40.24 3.06
2708 3664 5.975988 AAGATAGACATGGGTGTGGTAAT 57.024 39.130 0.00 0.00 39.09 1.89
2718 3674 6.824305 AAGGTGACAAAAAGATAGACATGG 57.176 37.500 0.00 0.00 0.00 3.66
2753 3709 4.274602 TGGTCGCTTTCCTATTAACACA 57.725 40.909 0.00 0.00 0.00 3.72
2754 3710 4.634443 ACATGGTCGCTTTCCTATTAACAC 59.366 41.667 0.00 0.00 0.00 3.32
3012 3970 6.247903 TGCGATCTATTTTTAAAGACTTGCG 58.752 36.000 0.00 0.00 0.00 4.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.