Multiple sequence alignment - TraesCS2D01G471800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G471800 chr2D 100.000 3801 0 0 1 3801 575703704 575707504 0.000000e+00 7020.0
1 TraesCS2D01G471800 chr2D 91.658 911 63 9 1398 2300 575686120 575687025 0.000000e+00 1249.0
2 TraesCS2D01G471800 chr2D 88.479 651 49 12 2438 3071 575688567 575689208 0.000000e+00 763.0
3 TraesCS2D01G471800 chr2D 92.399 421 21 5 1 414 180520138 180519722 1.180000e-164 590.0
4 TraesCS2D01G471800 chr2D 78.697 399 60 18 977 1369 575684545 575684924 3.790000e-60 243.0
5 TraesCS2D01G471800 chr2D 93.182 88 6 0 2297 2384 575687265 575687352 3.080000e-26 130.0
6 TraesCS2D01G471800 chr2B 94.352 1381 58 11 924 2300 691771819 691773183 0.000000e+00 2100.0
7 TraesCS2D01G471800 chr2B 86.949 590 39 13 2298 2868 691773423 691773993 2.490000e-176 628.0
8 TraesCS2D01G471800 chr2B 91.234 308 26 1 411 717 691768143 691768450 5.870000e-113 418.0
9 TraesCS2D01G471800 chr2B 93.939 132 6 2 785 915 691769629 691769759 8.330000e-47 198.0
10 TraesCS2D01G471800 chr2A 89.580 1334 106 24 977 2298 713873226 713874538 0.000000e+00 1663.0
11 TraesCS2D01G471800 chr2A 89.548 641 66 1 3162 3801 561253887 561253247 0.000000e+00 811.0
12 TraesCS2D01G471800 chr2A 90.453 618 41 8 2548 3156 713875003 713875611 0.000000e+00 798.0
13 TraesCS2D01G471800 chr2A 88.491 643 70 2 3163 3801 552867590 552866948 0.000000e+00 774.0
14 TraesCS2D01G471800 chr1D 92.368 642 36 9 3162 3801 31670229 31670859 0.000000e+00 902.0
15 TraesCS2D01G471800 chr1D 92.162 421 25 3 1 414 81681581 81682000 4.230000e-164 588.0
16 TraesCS2D01G471800 chr1D 84.651 215 32 1 411 624 396894020 396893806 2.970000e-51 213.0
17 TraesCS2D01G471800 chr3A 89.860 641 64 1 3162 3801 23773497 23772857 0.000000e+00 822.0
18 TraesCS2D01G471800 chr1A 89.114 643 66 4 3163 3801 517320871 517321513 0.000000e+00 797.0
19 TraesCS2D01G471800 chr7B 90.522 517 47 2 3163 3678 244203830 244203315 0.000000e+00 682.0
20 TraesCS2D01G471800 chr7B 81.804 643 111 5 3162 3801 52567093 52567732 5.590000e-148 534.0
21 TraesCS2D01G471800 chr6D 94.299 421 15 4 1 414 319713646 319714064 1.490000e-178 636.0
22 TraesCS2D01G471800 chr6D 93.112 421 21 3 1 414 114220032 114219613 9.030000e-171 610.0
23 TraesCS2D01G471800 chr6D 92.806 417 23 2 1 410 319736755 319736339 7.030000e-167 597.0
24 TraesCS2D01G471800 chr6D 92.399 421 24 4 1 414 93457115 93457534 9.090000e-166 593.0
25 TraesCS2D01G471800 chr5B 84.186 645 97 5 3160 3801 708956823 708957465 4.170000e-174 621.0
26 TraesCS2D01G471800 chr7D 93.269 416 20 4 2 410 237434021 237433607 1.170000e-169 606.0
27 TraesCS2D01G471800 chr7D 92.566 417 24 2 1 410 89226513 89226929 3.270000e-165 592.0
28 TraesCS2D01G471800 chr7D 85.106 94 11 1 469 562 108292190 108292280 4.040000e-15 93.5
29 TraesCS2D01G471800 chr4D 92.806 417 22 3 1 410 9712804 9713219 7.030000e-167 597.0
30 TraesCS2D01G471800 chr6B 82.582 643 107 4 3162 3801 665673684 665673044 2.560000e-156 562.0
31 TraesCS2D01G471800 chr6B 86.321 212 26 2 414 624 433074775 433074566 1.060000e-55 228.0
32 TraesCS2D01G471800 chr3B 90.233 215 20 1 411 624 535702705 535702491 2.890000e-71 279.0
33 TraesCS2D01G471800 chr3B 86.935 199 23 2 427 624 638335480 638335676 1.780000e-53 220.0
34 TraesCS2D01G471800 chr1B 90.233 215 20 1 411 624 141868179 141868393 2.890000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G471800 chr2D 575703704 575707504 3800 False 7020.00 7020 100.0000 1 3801 1 chr2D.!!$F1 3800
1 TraesCS2D01G471800 chr2D 575684545 575689208 4663 False 596.25 1249 88.0040 977 3071 4 chr2D.!!$F2 2094
2 TraesCS2D01G471800 chr2B 691768143 691773993 5850 False 836.00 2100 91.6185 411 2868 4 chr2B.!!$F1 2457
3 TraesCS2D01G471800 chr2A 713873226 713875611 2385 False 1230.50 1663 90.0165 977 3156 2 chr2A.!!$F1 2179
4 TraesCS2D01G471800 chr2A 561253247 561253887 640 True 811.00 811 89.5480 3162 3801 1 chr2A.!!$R2 639
5 TraesCS2D01G471800 chr2A 552866948 552867590 642 True 774.00 774 88.4910 3163 3801 1 chr2A.!!$R1 638
6 TraesCS2D01G471800 chr1D 31670229 31670859 630 False 902.00 902 92.3680 3162 3801 1 chr1D.!!$F1 639
7 TraesCS2D01G471800 chr3A 23772857 23773497 640 True 822.00 822 89.8600 3162 3801 1 chr3A.!!$R1 639
8 TraesCS2D01G471800 chr1A 517320871 517321513 642 False 797.00 797 89.1140 3163 3801 1 chr1A.!!$F1 638
9 TraesCS2D01G471800 chr7B 244203315 244203830 515 True 682.00 682 90.5220 3163 3678 1 chr7B.!!$R1 515
10 TraesCS2D01G471800 chr7B 52567093 52567732 639 False 534.00 534 81.8040 3162 3801 1 chr7B.!!$F1 639
11 TraesCS2D01G471800 chr5B 708956823 708957465 642 False 621.00 621 84.1860 3160 3801 1 chr5B.!!$F1 641
12 TraesCS2D01G471800 chr6B 665673044 665673684 640 True 562.00 562 82.5820 3162 3801 1 chr6B.!!$R2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.025513 CGTTGTCATAGCGCTTCTGC 59.974 55.0 18.68 10.64 0.00 4.26 F
754 756 0.039346 CATGGCGTGCATGAACACAA 60.039 50.0 10.93 0.00 40.73 3.33 F
1028 4240 0.104855 ATCATAGCTTCTTCGGCGCA 59.895 50.0 10.83 0.00 34.52 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 5848 0.852777 CAAGACCGTCAAGACACACG 59.147 55.0 0.40 0.00 35.72 4.49 R
1740 6122 1.230324 AGTGAAGAAGCGCCTTGAAC 58.770 50.0 2.29 2.41 0.00 3.18 R
2838 8708 0.615331 ACTGGATCGGTTCACATGCT 59.385 50.0 0.00 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.642938 GCACCCCATAGACACACAA 57.357 52.632 0.00 0.00 0.00 3.33
19 20 1.453155 GCACCCCATAGACACACAAG 58.547 55.000 0.00 0.00 0.00 3.16
20 21 1.271379 GCACCCCATAGACACACAAGT 60.271 52.381 0.00 0.00 0.00 3.16
21 22 2.814097 GCACCCCATAGACACACAAGTT 60.814 50.000 0.00 0.00 0.00 2.66
22 23 2.813754 CACCCCATAGACACACAAGTTG 59.186 50.000 0.00 0.00 0.00 3.16
23 24 2.224769 ACCCCATAGACACACAAGTTGG 60.225 50.000 7.96 0.00 0.00 3.77
24 25 2.224769 CCCCATAGACACACAAGTTGGT 60.225 50.000 7.96 0.00 0.00 3.67
25 26 3.074412 CCCATAGACACACAAGTTGGTC 58.926 50.000 7.96 5.30 0.00 4.02
26 27 3.495983 CCCATAGACACACAAGTTGGTCA 60.496 47.826 7.96 0.00 31.32 4.02
27 28 4.326826 CCATAGACACACAAGTTGGTCAT 58.673 43.478 7.96 0.27 31.32 3.06
28 29 4.761739 CCATAGACACACAAGTTGGTCATT 59.238 41.667 7.96 0.00 31.32 2.57
29 30 5.335113 CCATAGACACACAAGTTGGTCATTG 60.335 44.000 7.96 6.83 31.32 2.82
30 31 3.884895 AGACACACAAGTTGGTCATTGA 58.115 40.909 7.96 0.00 31.32 2.57
31 32 4.464008 AGACACACAAGTTGGTCATTGAT 58.536 39.130 7.96 0.00 31.32 2.57
32 33 4.516698 AGACACACAAGTTGGTCATTGATC 59.483 41.667 7.96 0.00 31.32 2.92
33 34 4.464008 ACACACAAGTTGGTCATTGATCT 58.536 39.130 7.96 0.00 0.00 2.75
34 35 4.889409 ACACACAAGTTGGTCATTGATCTT 59.111 37.500 7.96 0.00 0.00 2.40
35 36 5.360714 ACACACAAGTTGGTCATTGATCTTT 59.639 36.000 7.96 0.00 0.00 2.52
36 37 6.127366 ACACACAAGTTGGTCATTGATCTTTT 60.127 34.615 7.96 0.00 0.00 2.27
37 38 7.068103 ACACACAAGTTGGTCATTGATCTTTTA 59.932 33.333 7.96 0.00 0.00 1.52
38 39 7.592533 CACACAAGTTGGTCATTGATCTTTTAG 59.407 37.037 7.96 0.00 0.00 1.85
39 40 6.583806 CACAAGTTGGTCATTGATCTTTTAGC 59.416 38.462 7.96 0.00 0.00 3.09
40 41 6.491403 ACAAGTTGGTCATTGATCTTTTAGCT 59.509 34.615 7.96 0.00 0.00 3.32
41 42 6.506500 AGTTGGTCATTGATCTTTTAGCTG 57.493 37.500 0.00 0.00 0.00 4.24
42 43 6.006449 AGTTGGTCATTGATCTTTTAGCTGT 58.994 36.000 0.00 0.00 0.00 4.40
43 44 5.885230 TGGTCATTGATCTTTTAGCTGTG 57.115 39.130 0.00 0.00 0.00 3.66
44 45 5.316167 TGGTCATTGATCTTTTAGCTGTGT 58.684 37.500 0.00 0.00 0.00 3.72
45 46 5.181811 TGGTCATTGATCTTTTAGCTGTGTG 59.818 40.000 0.00 0.00 0.00 3.82
46 47 5.091431 GTCATTGATCTTTTAGCTGTGTGC 58.909 41.667 0.00 0.00 43.29 4.57
62 63 4.554036 GCGGTGCCCTCCTCCATC 62.554 72.222 0.00 0.00 0.00 3.51
63 64 3.083349 CGGTGCCCTCCTCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
64 65 2.446848 CGGTGCCCTCCTCCATCAT 61.447 63.158 0.00 0.00 0.00 2.45
65 66 1.121407 CGGTGCCCTCCTCCATCATA 61.121 60.000 0.00 0.00 0.00 2.15
66 67 1.140312 GGTGCCCTCCTCCATCATAA 58.860 55.000 0.00 0.00 0.00 1.90
67 68 1.707427 GGTGCCCTCCTCCATCATAAT 59.293 52.381 0.00 0.00 0.00 1.28
68 69 2.290577 GGTGCCCTCCTCCATCATAATC 60.291 54.545 0.00 0.00 0.00 1.75
69 70 1.988107 TGCCCTCCTCCATCATAATCC 59.012 52.381 0.00 0.00 0.00 3.01
70 71 1.988107 GCCCTCCTCCATCATAATCCA 59.012 52.381 0.00 0.00 0.00 3.41
71 72 2.290577 GCCCTCCTCCATCATAATCCAC 60.291 54.545 0.00 0.00 0.00 4.02
72 73 2.307098 CCCTCCTCCATCATAATCCACC 59.693 54.545 0.00 0.00 0.00 4.61
73 74 3.254960 CCTCCTCCATCATAATCCACCT 58.745 50.000 0.00 0.00 0.00 4.00
74 75 3.262915 CCTCCTCCATCATAATCCACCTC 59.737 52.174 0.00 0.00 0.00 3.85
75 76 2.899900 TCCTCCATCATAATCCACCTCG 59.100 50.000 0.00 0.00 0.00 4.63
76 77 2.027745 CCTCCATCATAATCCACCTCGG 60.028 54.545 0.00 0.00 0.00 4.63
77 78 2.634940 CTCCATCATAATCCACCTCGGT 59.365 50.000 0.00 0.00 35.57 4.69
78 79 2.632996 TCCATCATAATCCACCTCGGTC 59.367 50.000 0.00 0.00 35.57 4.79
79 80 2.368548 CCATCATAATCCACCTCGGTCA 59.631 50.000 0.00 0.00 35.57 4.02
80 81 3.008375 CCATCATAATCCACCTCGGTCAT 59.992 47.826 0.00 0.00 35.57 3.06
81 82 4.222810 CCATCATAATCCACCTCGGTCATA 59.777 45.833 0.00 0.00 35.57 2.15
82 83 5.104776 CCATCATAATCCACCTCGGTCATAT 60.105 44.000 0.00 0.00 35.57 1.78
83 84 5.661056 TCATAATCCACCTCGGTCATATC 57.339 43.478 0.00 0.00 35.57 1.63
84 85 4.157840 TCATAATCCACCTCGGTCATATCG 59.842 45.833 0.00 0.00 35.57 2.92
85 86 1.996798 ATCCACCTCGGTCATATCGT 58.003 50.000 0.00 0.00 35.57 3.73
86 87 2.643995 TCCACCTCGGTCATATCGTA 57.356 50.000 0.00 0.00 35.57 3.43
87 88 2.501261 TCCACCTCGGTCATATCGTAG 58.499 52.381 0.00 0.00 35.57 3.51
88 89 1.068472 CCACCTCGGTCATATCGTAGC 60.068 57.143 0.00 0.00 0.00 3.58
89 90 0.873054 ACCTCGGTCATATCGTAGCG 59.127 55.000 0.00 0.00 37.92 4.26
90 91 0.168348 CCTCGGTCATATCGTAGCGG 59.832 60.000 0.00 0.00 37.22 5.52
91 92 0.873054 CTCGGTCATATCGTAGCGGT 59.127 55.000 0.00 0.00 37.22 5.68
92 93 0.589708 TCGGTCATATCGTAGCGGTG 59.410 55.000 0.00 0.00 37.22 4.94
93 94 1.002250 CGGTCATATCGTAGCGGTGC 61.002 60.000 0.00 0.00 33.22 5.01
94 95 0.314302 GGTCATATCGTAGCGGTGCT 59.686 55.000 0.00 0.00 43.41 4.40
95 96 1.269621 GGTCATATCGTAGCGGTGCTT 60.270 52.381 0.00 0.00 40.44 3.91
96 97 2.030540 GGTCATATCGTAGCGGTGCTTA 60.031 50.000 0.00 0.00 40.44 3.09
97 98 3.235195 GTCATATCGTAGCGGTGCTTAG 58.765 50.000 0.00 0.00 40.44 2.18
98 99 2.228103 TCATATCGTAGCGGTGCTTAGG 59.772 50.000 0.00 0.00 40.44 2.69
99 100 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
100 101 2.679132 ATCGTAGCGGTGCTTAGGCG 62.679 60.000 0.00 0.00 40.44 5.52
101 102 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
102 103 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
103 104 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
117 118 2.202756 GAAGCCCTGCGTCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
118 119 4.452733 AAGCCCTGCGTCGGTAGC 62.453 66.667 0.00 0.00 0.00 3.58
120 121 4.752879 GCCCTGCGTCGGTAGCAA 62.753 66.667 0.00 0.00 44.67 3.91
121 122 2.813908 CCCTGCGTCGGTAGCAAC 60.814 66.667 0.00 0.00 44.67 4.17
122 123 2.048597 CCTGCGTCGGTAGCAACA 60.049 61.111 0.00 0.00 44.67 3.33
123 124 1.447838 CCTGCGTCGGTAGCAACAT 60.448 57.895 0.00 0.00 44.67 2.71
124 125 1.421410 CCTGCGTCGGTAGCAACATC 61.421 60.000 0.00 0.00 44.67 3.06
125 126 0.735978 CTGCGTCGGTAGCAACATCA 60.736 55.000 0.00 0.00 44.67 3.07
126 127 0.108377 TGCGTCGGTAGCAACATCAT 60.108 50.000 0.00 0.00 42.18 2.45
127 128 0.577269 GCGTCGGTAGCAACATCATC 59.423 55.000 0.00 0.00 34.19 2.92
128 129 1.921243 CGTCGGTAGCAACATCATCA 58.079 50.000 0.00 0.00 0.00 3.07
129 130 1.588404 CGTCGGTAGCAACATCATCAC 59.412 52.381 0.00 0.00 0.00 3.06
130 131 1.933853 GTCGGTAGCAACATCATCACC 59.066 52.381 0.00 0.00 0.00 4.02
131 132 0.930310 CGGTAGCAACATCATCACCG 59.070 55.000 0.00 0.00 42.41 4.94
132 133 1.739035 CGGTAGCAACATCATCACCGT 60.739 52.381 2.91 0.00 42.93 4.83
133 134 1.933853 GGTAGCAACATCATCACCGTC 59.066 52.381 0.00 0.00 0.00 4.79
134 135 2.616960 GTAGCAACATCATCACCGTCA 58.383 47.619 0.00 0.00 0.00 4.35
135 136 2.408271 AGCAACATCATCACCGTCAT 57.592 45.000 0.00 0.00 0.00 3.06
136 137 2.283298 AGCAACATCATCACCGTCATC 58.717 47.619 0.00 0.00 0.00 2.92
137 138 1.004610 GCAACATCATCACCGTCATCG 60.005 52.381 0.00 0.00 0.00 3.84
138 139 1.004610 CAACATCATCACCGTCATCGC 60.005 52.381 0.00 0.00 35.54 4.58
139 140 0.871592 ACATCATCACCGTCATCGCG 60.872 55.000 0.00 0.00 35.54 5.87
140 141 0.871592 CATCATCACCGTCATCGCGT 60.872 55.000 5.77 0.00 35.54 6.01
141 142 0.179111 ATCATCACCGTCATCGCGTT 60.179 50.000 5.77 0.00 35.54 4.84
142 143 1.075979 TCATCACCGTCATCGCGTTG 61.076 55.000 10.93 10.93 35.54 4.10
143 144 1.080093 ATCACCGTCATCGCGTTGT 60.080 52.632 16.21 0.00 35.54 3.32
144 145 1.076533 ATCACCGTCATCGCGTTGTC 61.077 55.000 16.21 10.29 35.54 3.18
145 146 2.803670 ACCGTCATCGCGTTGTCG 60.804 61.111 23.48 23.48 40.37 4.35
146 147 2.803670 CCGTCATCGCGTTGTCGT 60.804 61.111 26.41 0.00 39.49 4.34
148 149 2.093983 GTCATCGCGTTGTCGTGC 59.906 61.111 16.21 1.11 45.60 5.34
149 150 2.049526 TCATCGCGTTGTCGTGCT 60.050 55.556 16.21 0.00 45.60 4.40
150 151 2.094539 CATCGCGTTGTCGTGCTG 59.905 61.111 5.77 0.00 45.60 4.41
151 152 2.049526 ATCGCGTTGTCGTGCTGA 60.050 55.556 5.77 0.00 45.60 4.26
159 160 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
160 161 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
161 162 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
162 163 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
163 164 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
164 165 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
165 166 1.251527 TGCTGACGGAACTCTCCCTC 61.252 60.000 0.00 0.00 38.71 4.30
166 167 1.803943 CTGACGGAACTCTCCCTCG 59.196 63.158 0.00 0.00 38.71 4.63
167 168 0.677098 CTGACGGAACTCTCCCTCGA 60.677 60.000 0.00 0.00 38.71 4.04
168 169 0.251033 TGACGGAACTCTCCCTCGAA 60.251 55.000 0.00 0.00 38.71 3.71
169 170 0.452585 GACGGAACTCTCCCTCGAAG 59.547 60.000 0.00 0.00 38.71 3.79
170 171 1.139947 CGGAACTCTCCCTCGAAGC 59.860 63.158 0.00 0.00 38.71 3.86
171 172 1.316706 CGGAACTCTCCCTCGAAGCT 61.317 60.000 0.00 0.00 38.71 3.74
172 173 0.458260 GGAACTCTCCCTCGAAGCTC 59.542 60.000 0.00 0.00 35.42 4.09
173 174 1.470051 GAACTCTCCCTCGAAGCTCT 58.530 55.000 0.00 0.00 0.00 4.09
174 175 2.645802 GAACTCTCCCTCGAAGCTCTA 58.354 52.381 0.00 0.00 0.00 2.43
175 176 2.047002 ACTCTCCCTCGAAGCTCTAC 57.953 55.000 0.00 0.00 0.00 2.59
176 177 1.562475 ACTCTCCCTCGAAGCTCTACT 59.438 52.381 0.00 0.00 0.00 2.57
177 178 1.946768 CTCTCCCTCGAAGCTCTACTG 59.053 57.143 0.00 0.00 0.00 2.74
178 179 1.028905 CTCCCTCGAAGCTCTACTGG 58.971 60.000 0.00 0.00 0.00 4.00
179 180 0.624254 TCCCTCGAAGCTCTACTGGA 59.376 55.000 0.00 0.00 0.00 3.86
180 181 1.215673 TCCCTCGAAGCTCTACTGGAT 59.784 52.381 0.00 0.00 0.00 3.41
181 182 1.611491 CCCTCGAAGCTCTACTGGATC 59.389 57.143 0.00 0.00 0.00 3.36
182 183 1.265635 CCTCGAAGCTCTACTGGATCG 59.734 57.143 0.00 0.00 0.00 3.69
183 184 1.944024 CTCGAAGCTCTACTGGATCGT 59.056 52.381 0.00 0.00 0.00 3.73
184 185 1.671328 TCGAAGCTCTACTGGATCGTG 59.329 52.381 0.00 0.00 0.00 4.35
185 186 1.671328 CGAAGCTCTACTGGATCGTGA 59.329 52.381 0.00 0.00 0.00 4.35
186 187 2.286713 CGAAGCTCTACTGGATCGTGAG 60.287 54.545 0.00 0.00 0.00 3.51
187 188 2.428544 AGCTCTACTGGATCGTGAGT 57.571 50.000 0.00 0.00 0.00 3.41
188 189 2.729194 AGCTCTACTGGATCGTGAGTT 58.271 47.619 0.00 0.00 0.00 3.01
189 190 2.685897 AGCTCTACTGGATCGTGAGTTC 59.314 50.000 0.00 0.00 0.00 3.01
190 191 2.539953 GCTCTACTGGATCGTGAGTTCG 60.540 54.545 0.00 0.00 0.00 3.95
191 192 1.400846 TCTACTGGATCGTGAGTTCGC 59.599 52.381 0.00 0.00 0.00 4.70
209 210 3.371063 GGGACGTCACCGAGCTGA 61.371 66.667 18.91 0.00 37.88 4.26
210 211 2.649034 GGACGTCACCGAGCTGAA 59.351 61.111 18.91 0.00 37.88 3.02
211 212 1.733399 GGACGTCACCGAGCTGAAC 60.733 63.158 18.91 0.00 37.88 3.18
212 213 2.050351 ACGTCACCGAGCTGAACG 60.050 61.111 0.00 0.00 37.88 3.95
213 214 2.050351 CGTCACCGAGCTGAACGT 60.050 61.111 0.00 0.00 35.63 3.99
214 215 2.365068 CGTCACCGAGCTGAACGTG 61.365 63.158 0.00 0.00 35.63 4.49
215 216 1.299926 GTCACCGAGCTGAACGTGT 60.300 57.895 0.00 0.00 0.00 4.49
216 217 1.299850 TCACCGAGCTGAACGTGTG 60.300 57.895 0.00 0.00 35.24 3.82
217 218 2.661866 ACCGAGCTGAACGTGTGC 60.662 61.111 0.00 0.00 0.00 4.57
218 219 2.661537 CCGAGCTGAACGTGTGCA 60.662 61.111 0.00 0.00 0.00 4.57
219 220 2.661566 CCGAGCTGAACGTGTGCAG 61.662 63.158 3.48 3.48 35.28 4.41
220 221 1.661509 CGAGCTGAACGTGTGCAGA 60.662 57.895 12.25 0.00 34.06 4.26
221 222 1.010935 CGAGCTGAACGTGTGCAGAT 61.011 55.000 12.25 5.18 34.06 2.90
222 223 0.718343 GAGCTGAACGTGTGCAGATC 59.282 55.000 12.25 11.22 39.88 2.75
223 224 1.010935 AGCTGAACGTGTGCAGATCG 61.011 55.000 12.25 0.00 34.06 3.69
224 225 1.417592 CTGAACGTGTGCAGATCGC 59.582 57.895 1.46 3.07 42.89 4.58
233 234 4.100981 GCAGATCGCAGAGGTGTC 57.899 61.111 4.93 0.00 43.63 3.67
234 235 1.875813 GCAGATCGCAGAGGTGTCG 60.876 63.158 4.93 0.00 43.63 4.35
235 236 1.508545 CAGATCGCAGAGGTGTCGT 59.491 57.895 0.00 0.00 43.63 4.34
236 237 0.733150 CAGATCGCAGAGGTGTCGTA 59.267 55.000 0.00 0.00 43.63 3.43
237 238 1.335182 CAGATCGCAGAGGTGTCGTAT 59.665 52.381 0.00 0.00 43.63 3.06
238 239 1.335182 AGATCGCAGAGGTGTCGTATG 59.665 52.381 0.00 0.00 43.63 2.39
239 240 1.065701 GATCGCAGAGGTGTCGTATGT 59.934 52.381 0.00 0.00 43.63 2.29
240 241 0.885879 TCGCAGAGGTGTCGTATGTT 59.114 50.000 0.00 0.00 0.00 2.71
241 242 1.135489 TCGCAGAGGTGTCGTATGTTC 60.135 52.381 0.00 0.00 0.00 3.18
242 243 1.269166 GCAGAGGTGTCGTATGTTCG 58.731 55.000 0.00 0.00 0.00 3.95
243 244 1.909376 CAGAGGTGTCGTATGTTCGG 58.091 55.000 0.00 0.00 0.00 4.30
244 245 1.201647 CAGAGGTGTCGTATGTTCGGT 59.798 52.381 0.00 0.00 0.00 4.69
245 246 2.421073 CAGAGGTGTCGTATGTTCGGTA 59.579 50.000 0.00 0.00 0.00 4.02
246 247 2.421424 AGAGGTGTCGTATGTTCGGTAC 59.579 50.000 0.00 0.00 0.00 3.34
247 248 2.421424 GAGGTGTCGTATGTTCGGTACT 59.579 50.000 0.00 0.00 0.00 2.73
248 249 3.609853 AGGTGTCGTATGTTCGGTACTA 58.390 45.455 0.00 0.00 0.00 1.82
249 250 3.624861 AGGTGTCGTATGTTCGGTACTAG 59.375 47.826 0.00 0.00 0.00 2.57
250 251 3.242870 GGTGTCGTATGTTCGGTACTAGG 60.243 52.174 0.00 0.00 0.00 3.02
251 252 3.623060 GTGTCGTATGTTCGGTACTAGGA 59.377 47.826 0.00 0.00 0.00 2.94
252 253 4.274459 GTGTCGTATGTTCGGTACTAGGAT 59.726 45.833 0.00 0.00 0.00 3.24
253 254 4.512944 TGTCGTATGTTCGGTACTAGGATC 59.487 45.833 0.00 0.00 0.00 3.36
254 255 3.742882 TCGTATGTTCGGTACTAGGATCG 59.257 47.826 0.00 0.00 0.00 3.69
255 256 3.120408 CGTATGTTCGGTACTAGGATCGG 60.120 52.174 8.01 0.00 0.00 4.18
256 257 2.425143 TGTTCGGTACTAGGATCGGT 57.575 50.000 8.01 0.00 0.00 4.69
257 258 2.292267 TGTTCGGTACTAGGATCGGTC 58.708 52.381 8.01 1.95 0.00 4.79
258 259 1.262683 GTTCGGTACTAGGATCGGTCG 59.737 57.143 8.01 0.00 0.00 4.79
259 260 0.752658 TCGGTACTAGGATCGGTCGA 59.247 55.000 8.01 0.00 0.00 4.20
260 261 1.345741 TCGGTACTAGGATCGGTCGAT 59.654 52.381 8.01 5.49 37.59 3.59
268 269 2.496718 GATCGGTCGATCGTGAAGC 58.503 57.895 19.01 4.66 41.09 3.86
269 270 0.935366 GATCGGTCGATCGTGAAGCC 60.935 60.000 19.01 9.65 41.09 4.35
270 271 2.663630 ATCGGTCGATCGTGAAGCCG 62.664 60.000 19.01 19.54 40.43 5.52
271 272 2.181021 GGTCGATCGTGAAGCCGT 59.819 61.111 15.94 0.00 0.00 5.68
272 273 1.430632 GGTCGATCGTGAAGCCGTA 59.569 57.895 15.94 0.00 0.00 4.02
273 274 0.864797 GGTCGATCGTGAAGCCGTAC 60.865 60.000 15.94 2.00 0.00 3.67
274 275 1.061411 TCGATCGTGAAGCCGTACG 59.939 57.895 15.94 8.69 41.38 3.67
277 278 3.659334 TCGTGAAGCCGTACGACT 58.341 55.556 18.76 7.80 43.54 4.18
278 279 2.839629 TCGTGAAGCCGTACGACTA 58.160 52.632 18.76 0.00 43.54 2.59
279 280 0.443869 TCGTGAAGCCGTACGACTAC 59.556 55.000 18.76 5.59 43.54 2.73
280 281 0.166597 CGTGAAGCCGTACGACTACA 59.833 55.000 18.76 8.82 42.54 2.74
281 282 1.202110 CGTGAAGCCGTACGACTACAT 60.202 52.381 18.76 0.00 42.54 2.29
282 283 2.448219 GTGAAGCCGTACGACTACATC 58.552 52.381 18.76 5.80 0.00 3.06
283 284 2.086094 TGAAGCCGTACGACTACATCA 58.914 47.619 18.76 8.65 0.00 3.07
284 285 2.488937 TGAAGCCGTACGACTACATCAA 59.511 45.455 18.76 0.00 0.00 2.57
285 286 2.556534 AGCCGTACGACTACATCAAC 57.443 50.000 18.76 0.00 0.00 3.18
286 287 1.133790 AGCCGTACGACTACATCAACC 59.866 52.381 18.76 0.00 0.00 3.77
287 288 1.818850 CCGTACGACTACATCAACCG 58.181 55.000 18.76 0.00 0.00 4.44
288 289 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
289 290 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
290 291 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
291 292 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
292 293 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
293 294 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
294 295 1.389106 GACTACATCAACCGCGTTGTC 59.611 52.381 16.97 5.64 43.23 3.18
295 296 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
296 297 1.999735 CTACATCAACCGCGTTGTCAT 59.000 47.619 16.97 5.85 43.23 3.06
297 298 2.087501 ACATCAACCGCGTTGTCATA 57.912 45.000 16.97 3.28 43.23 2.15
298 299 1.999735 ACATCAACCGCGTTGTCATAG 59.000 47.619 16.97 9.07 43.23 2.23
299 300 1.006832 ATCAACCGCGTTGTCATAGC 58.993 50.000 16.97 0.00 43.23 2.97
307 308 0.025513 CGTTGTCATAGCGCTTCTGC 59.974 55.000 18.68 10.64 0.00 4.26
309 310 1.325943 GTTGTCATAGCGCTTCTGCTC 59.674 52.381 18.68 10.77 45.87 4.26
310 311 0.532115 TGTCATAGCGCTTCTGCTCA 59.468 50.000 18.68 13.07 45.87 4.26
311 312 0.926846 GTCATAGCGCTTCTGCTCAC 59.073 55.000 18.68 4.79 45.87 3.51
312 313 0.526310 TCATAGCGCTTCTGCTCACG 60.526 55.000 18.68 0.00 45.87 4.35
313 314 0.526310 CATAGCGCTTCTGCTCACGA 60.526 55.000 18.68 0.00 45.87 4.35
314 315 0.248825 ATAGCGCTTCTGCTCACGAG 60.249 55.000 18.68 0.00 45.87 4.18
315 316 2.271607 TAGCGCTTCTGCTCACGAGG 62.272 60.000 18.68 0.00 45.87 4.63
316 317 2.507992 CGCTTCTGCTCACGAGGG 60.508 66.667 0.00 0.00 36.97 4.30
317 318 2.659610 GCTTCTGCTCACGAGGGT 59.340 61.111 0.00 0.00 36.03 4.34
318 319 1.890894 GCTTCTGCTCACGAGGGTA 59.109 57.895 0.00 0.00 36.03 3.69
319 320 0.458716 GCTTCTGCTCACGAGGGTAC 60.459 60.000 0.00 0.00 36.03 3.34
320 321 0.179161 CTTCTGCTCACGAGGGTACG 60.179 60.000 0.00 0.00 39.31 3.67
327 328 2.032528 ACGAGGGTACGTGGACGA 59.967 61.111 6.12 0.00 44.84 4.20
328 329 2.328099 ACGAGGGTACGTGGACGAC 61.328 63.158 6.12 0.14 44.84 4.34
329 330 2.327343 CGAGGGTACGTGGACGACA 61.327 63.158 6.12 0.00 43.02 4.35
330 331 1.211190 GAGGGTACGTGGACGACAC 59.789 63.158 6.12 3.44 46.78 3.67
337 338 2.971452 GTGGACGACACTCTCCCC 59.029 66.667 7.56 0.00 46.72 4.81
338 339 1.606889 GTGGACGACACTCTCCCCT 60.607 63.158 7.56 0.00 46.72 4.79
339 340 1.304217 TGGACGACACTCTCCCCTC 60.304 63.158 0.00 0.00 0.00 4.30
340 341 1.000646 GGACGACACTCTCCCCTCT 60.001 63.158 0.00 0.00 0.00 3.69
341 342 1.033202 GGACGACACTCTCCCCTCTC 61.033 65.000 0.00 0.00 0.00 3.20
342 343 1.370587 GACGACACTCTCCCCTCTCG 61.371 65.000 0.00 0.00 0.00 4.04
343 344 1.377463 CGACACTCTCCCCTCTCGT 60.377 63.158 0.00 0.00 0.00 4.18
344 345 0.961358 CGACACTCTCCCCTCTCGTT 60.961 60.000 0.00 0.00 0.00 3.85
345 346 0.528470 GACACTCTCCCCTCTCGTTG 59.472 60.000 0.00 0.00 0.00 4.10
346 347 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
347 348 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
348 349 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
349 350 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
350 351 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
351 352 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
352 353 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
353 354 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
354 355 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
355 356 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
356 357 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
357 358 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
358 359 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
359 360 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
360 361 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
361 362 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
362 363 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
363 364 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
364 365 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
365 366 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
366 367 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
367 368 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
368 369 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
369 370 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
370 371 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
371 372 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
372 373 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
373 374 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
385 386 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
409 410 7.814264 TTTAAAATTACTACGTTCCCCAACA 57.186 32.000 0.00 0.00 32.14 3.33
428 429 0.324943 AAGTGTCGCCCTGCAATACT 59.675 50.000 0.00 0.00 0.00 2.12
429 430 0.391661 AGTGTCGCCCTGCAATACTG 60.392 55.000 0.00 0.00 0.00 2.74
460 461 1.450312 CGACCTCAGGAACATGCCC 60.450 63.158 0.00 0.00 0.00 5.36
471 472 4.429212 CATGCCCGACGGTCGACA 62.429 66.667 30.33 25.70 43.74 4.35
509 510 1.471119 CCTGCTCATCTTGCAACCAT 58.529 50.000 0.00 0.00 40.13 3.55
511 512 2.089201 CTGCTCATCTTGCAACCATCA 58.911 47.619 0.00 0.00 40.13 3.07
514 515 2.686405 GCTCATCTTGCAACCATCATCA 59.314 45.455 0.00 0.00 0.00 3.07
515 516 3.318275 GCTCATCTTGCAACCATCATCAT 59.682 43.478 0.00 0.00 0.00 2.45
528 530 1.358877 TCATCATCGCCACAAAGTCG 58.641 50.000 0.00 0.00 0.00 4.18
546 548 2.604174 GCAACGCTACAACCGCACT 61.604 57.895 0.00 0.00 0.00 4.40
549 551 2.738521 CGCTACAACCGCACTGCT 60.739 61.111 0.00 0.00 0.00 4.24
578 580 1.430632 CTGCCAACCATGATGTCGC 59.569 57.895 0.00 0.00 0.00 5.19
597 599 2.743718 CACGTCCAGCCTCAAGGT 59.256 61.111 0.00 0.00 37.57 3.50
598 600 1.669115 CACGTCCAGCCTCAAGGTG 60.669 63.158 0.00 0.00 43.90 4.00
607 609 0.676151 GCCTCAAGGTGGAGCAAGAG 60.676 60.000 0.00 0.00 37.57 2.85
623 625 3.679917 GCAAGAGGGATCACGATCTTCAA 60.680 47.826 6.97 0.00 37.92 2.69
626 628 3.070734 AGAGGGATCACGATCTTCAATGG 59.929 47.826 6.97 0.00 37.92 3.16
628 630 3.134458 GGGATCACGATCTTCAATGGTC 58.866 50.000 6.97 0.00 37.92 4.02
717 719 1.909700 TGGCAGGAGTTTTCATGGTC 58.090 50.000 0.00 0.00 35.71 4.02
719 721 2.238521 GGCAGGAGTTTTCATGGTCAA 58.761 47.619 0.00 0.00 35.71 3.18
720 722 2.627699 GGCAGGAGTTTTCATGGTCAAA 59.372 45.455 0.00 0.00 35.71 2.69
721 723 3.259123 GGCAGGAGTTTTCATGGTCAAAT 59.741 43.478 0.00 0.00 35.71 2.32
722 724 4.488879 GCAGGAGTTTTCATGGTCAAATC 58.511 43.478 0.00 0.00 35.71 2.17
723 725 4.022068 GCAGGAGTTTTCATGGTCAAATCA 60.022 41.667 0.00 0.00 35.71 2.57
724 726 5.509501 GCAGGAGTTTTCATGGTCAAATCAA 60.510 40.000 0.00 0.00 35.71 2.57
725 727 6.694447 CAGGAGTTTTCATGGTCAAATCAAT 58.306 36.000 0.00 0.00 31.65 2.57
726 728 6.588756 CAGGAGTTTTCATGGTCAAATCAATG 59.411 38.462 0.00 0.00 31.65 2.82
727 729 5.870978 GGAGTTTTCATGGTCAAATCAATGG 59.129 40.000 0.00 0.00 0.00 3.16
728 730 5.797051 AGTTTTCATGGTCAAATCAATGGG 58.203 37.500 0.00 0.00 0.00 4.00
729 731 3.891422 TTCATGGTCAAATCAATGGGC 57.109 42.857 0.00 0.00 0.00 5.36
730 732 2.109774 TCATGGTCAAATCAATGGGCC 58.890 47.619 0.00 0.00 0.00 5.80
731 733 1.139455 CATGGTCAAATCAATGGGCCC 59.861 52.381 17.59 17.59 0.00 5.80
732 734 0.115944 TGGTCAAATCAATGGGCCCA 59.884 50.000 30.92 30.92 0.00 5.36
733 735 1.273724 TGGTCAAATCAATGGGCCCAT 60.274 47.619 32.75 32.75 38.46 4.00
734 736 1.413812 GGTCAAATCAATGGGCCCATC 59.586 52.381 37.44 21.30 35.31 3.51
735 737 1.413812 GTCAAATCAATGGGCCCATCC 59.586 52.381 37.44 13.62 35.31 3.51
736 738 1.008084 TCAAATCAATGGGCCCATCCA 59.992 47.619 37.44 25.98 41.60 3.41
738 740 1.724545 AATCAATGGGCCCATCCATG 58.275 50.000 37.44 29.89 46.05 3.66
739 741 0.178915 ATCAATGGGCCCATCCATGG 60.179 55.000 37.44 22.59 46.05 3.66
740 742 2.122725 AATGGGCCCATCCATGGC 60.123 61.111 37.44 0.00 46.05 4.40
746 748 2.520020 CCCATCCATGGCGTGCAT 60.520 61.111 6.96 0.00 46.70 3.96
747 749 2.725641 CCATCCATGGCGTGCATG 59.274 61.111 6.96 3.52 41.75 4.06
748 750 1.824760 CCATCCATGGCGTGCATGA 60.825 57.895 12.22 0.00 41.75 3.07
749 751 1.385756 CCATCCATGGCGTGCATGAA 61.386 55.000 12.22 0.00 41.75 2.57
750 752 0.248743 CATCCATGGCGTGCATGAAC 60.249 55.000 10.93 0.00 32.09 3.18
751 753 0.680601 ATCCATGGCGTGCATGAACA 60.681 50.000 10.93 8.18 32.09 3.18
752 754 1.153978 CCATGGCGTGCATGAACAC 60.154 57.895 10.93 0.00 37.19 3.32
753 755 1.580437 CATGGCGTGCATGAACACA 59.420 52.632 10.93 2.48 40.73 3.72
754 756 0.039346 CATGGCGTGCATGAACACAA 60.039 50.000 10.93 0.00 40.73 3.33
755 757 0.889994 ATGGCGTGCATGAACACAAT 59.110 45.000 10.93 0.00 40.73 2.71
756 758 0.240678 TGGCGTGCATGAACACAATC 59.759 50.000 10.93 0.00 40.73 2.67
757 759 0.240678 GGCGTGCATGAACACAATCA 59.759 50.000 10.93 0.00 40.73 2.57
758 760 1.335780 GGCGTGCATGAACACAATCAA 60.336 47.619 10.93 0.00 40.73 2.57
759 761 2.598589 GCGTGCATGAACACAATCAAT 58.401 42.857 10.93 0.00 40.73 2.57
760 762 2.343246 GCGTGCATGAACACAATCAATG 59.657 45.455 10.93 0.00 40.73 2.82
761 763 2.343246 CGTGCATGAACACAATCAATGC 59.657 45.455 4.29 0.00 40.73 3.56
762 764 3.581755 GTGCATGAACACAATCAATGCT 58.418 40.909 0.00 0.00 40.40 3.79
763 765 3.991773 GTGCATGAACACAATCAATGCTT 59.008 39.130 0.00 0.00 40.40 3.91
764 766 5.162794 GTGCATGAACACAATCAATGCTTA 58.837 37.500 0.00 0.00 40.40 3.09
765 767 5.808540 GTGCATGAACACAATCAATGCTTAT 59.191 36.000 0.00 0.00 40.40 1.73
766 768 6.311935 GTGCATGAACACAATCAATGCTTATT 59.688 34.615 0.00 0.00 40.40 1.40
767 769 6.874664 TGCATGAACACAATCAATGCTTATTT 59.125 30.769 0.00 0.00 36.10 1.40
811 1972 2.572191 TCCTATTACTTGTCCGTGCG 57.428 50.000 0.00 0.00 0.00 5.34
876 2037 1.079819 CGTGCCGGACATGAACTCT 60.080 57.895 5.05 0.00 37.49 3.24
878 2039 1.403647 CGTGCCGGACATGAACTCTTA 60.404 52.381 5.05 0.00 37.49 2.10
894 2056 6.714810 TGAACTCTTATTTGCTCTTTGGCTTA 59.285 34.615 0.00 0.00 0.00 3.09
906 2068 4.069304 TCTTTGGCTTATGCTACACGTTT 58.931 39.130 0.13 0.00 39.59 3.60
908 2070 4.932268 TTGGCTTATGCTACACGTTTAC 57.068 40.909 0.13 0.00 39.59 2.01
939 4151 0.320421 ACATAACACGGCTTCAGCGT 60.320 50.000 0.00 0.00 43.26 5.07
962 4174 7.474398 GTATGCATATACGAGTACGATCCTA 57.526 40.000 10.16 0.00 42.66 2.94
977 4189 1.604604 TCCTAGTGTTGCCTGTTTGC 58.395 50.000 0.00 0.00 0.00 3.68
1016 4228 1.267806 CGCCATGGGAAACATCATAGC 59.732 52.381 15.13 0.00 37.84 2.97
1027 4239 0.510359 CATCATAGCTTCTTCGGCGC 59.490 55.000 0.00 0.00 34.52 6.53
1028 4240 0.104855 ATCATAGCTTCTTCGGCGCA 59.895 50.000 10.83 0.00 34.52 6.09
1029 4241 0.806102 TCATAGCTTCTTCGGCGCAC 60.806 55.000 10.83 0.00 34.52 5.34
1030 4242 1.521681 ATAGCTTCTTCGGCGCACC 60.522 57.895 10.83 0.00 34.52 5.01
1032 4244 2.835701 TAGCTTCTTCGGCGCACCAG 62.836 60.000 10.83 0.37 34.57 4.00
1033 4245 2.357517 CTTCTTCGGCGCACCAGT 60.358 61.111 10.83 0.00 34.57 4.00
1034 4246 1.080093 CTTCTTCGGCGCACCAGTA 60.080 57.895 10.83 0.00 34.57 2.74
1245 4457 2.574399 GACGAGGGCGAAGAAGCT 59.426 61.111 0.00 0.00 41.64 3.74
1294 4506 0.907704 TCCCTGTAGCCGACAACCAT 60.908 55.000 0.00 0.00 37.70 3.55
1317 4529 1.669760 GACGGCCGTGATGACCAAA 60.670 57.895 39.65 0.00 0.00 3.28
1469 5848 2.983229 AGATGACTGCTTCACCATCAC 58.017 47.619 0.00 0.00 36.92 3.06
1536 5918 1.820581 GTTCATCGTCCCGATCCCA 59.179 57.895 0.00 0.00 45.19 4.37
1537 5919 0.177141 GTTCATCGTCCCGATCCCAA 59.823 55.000 0.00 0.00 45.19 4.12
1740 6122 1.892819 ATGACGTGGAGCCCTCTGTG 61.893 60.000 0.00 0.00 0.00 3.66
1777 6159 8.023021 TCTTCACTTTATATACACAGATGCCT 57.977 34.615 0.00 0.00 0.00 4.75
1790 6172 1.421268 AGATGCCTTGCCGGATAATCA 59.579 47.619 5.05 0.00 33.16 2.57
2331 6969 7.333672 GTCCGTAACTATGTTTGAGAATCCTTT 59.666 37.037 0.00 0.00 0.00 3.11
2352 6990 8.965819 TCCTTTAAATTAAAGAGCATGCATGTA 58.034 29.630 26.79 9.07 46.19 2.29
2421 7060 1.212751 CGACTCATCGGCACAGTGA 59.787 57.895 4.15 0.00 44.99 3.41
2422 7061 0.388520 CGACTCATCGGCACAGTGAA 60.389 55.000 4.15 0.00 44.99 3.18
2423 7062 1.071605 GACTCATCGGCACAGTGAAC 58.928 55.000 4.15 0.00 0.00 3.18
2462 8303 4.444056 GCACATGCACTATTTTCACGTTTT 59.556 37.500 0.00 0.00 41.59 2.43
2463 8304 5.051106 GCACATGCACTATTTTCACGTTTTT 60.051 36.000 0.00 0.00 41.59 1.94
2520 8361 8.115490 AGCTGAATAATAAACTCTTGCACTTT 57.885 30.769 0.00 0.00 0.00 2.66
2546 8387 8.036273 TCTTTTTATCTTCGTTGGTTGATACC 57.964 34.615 0.00 0.00 45.26 2.73
2579 8421 5.233902 GTGTGTTGAGAGAGATGATGCATAC 59.766 44.000 0.00 0.00 0.00 2.39
2794 8651 0.450583 GTCGAGTGTACATGAGGCGA 59.549 55.000 0.00 1.74 0.00 5.54
2796 8653 0.170339 CGAGTGTACATGAGGCGACA 59.830 55.000 0.00 0.00 0.00 4.35
2815 8672 0.683504 ACTAGTCCGGTCGGCTGATT 60.684 55.000 0.00 0.00 34.68 2.57
2817 8674 1.679680 CTAGTCCGGTCGGCTGATTAA 59.320 52.381 0.00 0.00 34.68 1.40
2818 8675 0.460311 AGTCCGGTCGGCTGATTAAG 59.540 55.000 0.00 0.00 34.68 1.85
2819 8676 0.529992 GTCCGGTCGGCTGATTAAGG 60.530 60.000 0.00 0.17 34.68 2.69
2834 8704 2.270434 TAAGGCTCAAGGGTGGATCT 57.730 50.000 0.00 0.00 0.00 2.75
2838 8708 2.050144 GGCTCAAGGGTGGATCTATCA 58.950 52.381 0.00 0.00 0.00 2.15
2854 8724 1.959042 ATCAGCATGTGAACCGATCC 58.041 50.000 0.00 0.00 39.19 3.36
2857 8727 0.615331 AGCATGTGAACCGATCCAGT 59.385 50.000 0.00 0.00 0.00 4.00
2942 8812 9.615295 GCTACGACTTTATTTTGGAATTTACAA 57.385 29.630 0.00 0.00 0.00 2.41
3017 8888 1.285578 CTTGTGGGTTTGTTTTGGCG 58.714 50.000 0.00 0.00 0.00 5.69
3023 8894 0.781787 GGTTTGTTTTGGCGCGATTC 59.218 50.000 12.10 0.00 0.00 2.52
3082 8955 3.502979 CCTAACGACAGCTCCTACCTATC 59.497 52.174 0.00 0.00 0.00 2.08
3114 8987 3.427233 GCCTGAATCTGTGCAATTGTCTC 60.427 47.826 7.40 1.63 0.00 3.36
3128 9001 8.025445 GTGCAATTGTCTCATTTCTTCAGTTAT 58.975 33.333 7.40 0.00 0.00 1.89
3129 9002 9.230122 TGCAATTGTCTCATTTCTTCAGTTATA 57.770 29.630 7.40 0.00 0.00 0.98
3135 9008 9.569167 TGTCTCATTTCTTCAGTTATAAGTACG 57.431 33.333 0.00 0.00 0.00 3.67
3137 9010 7.705325 TCTCATTTCTTCAGTTATAAGTACGGC 59.295 37.037 0.00 0.00 0.00 5.68
3138 9011 7.553334 TCATTTCTTCAGTTATAAGTACGGCT 58.447 34.615 0.00 0.00 0.00 5.52
3156 9029 4.218417 ACGGCTTCAATTCACTTTGCTTAT 59.782 37.500 0.00 0.00 0.00 1.73
3157 9030 5.163513 CGGCTTCAATTCACTTTGCTTATT 58.836 37.500 0.00 0.00 0.00 1.40
3158 9031 5.634859 CGGCTTCAATTCACTTTGCTTATTT 59.365 36.000 0.00 0.00 0.00 1.40
3243 9119 1.146263 GAGATTACCAGGGTGCCCG 59.854 63.158 0.06 0.00 41.95 6.13
3282 9158 5.081032 CCCACCCCTAACTTTAAAACATGA 58.919 41.667 0.00 0.00 0.00 3.07
3484 9361 0.466124 AGATCTTCGGCAAGGGCTAC 59.534 55.000 0.00 0.00 40.87 3.58
3545 9422 6.158598 GTCGTAAACACCCTTCACAAGTATA 58.841 40.000 0.00 0.00 0.00 1.47
3613 9490 2.039137 AACTCCCCTCCTCCGGTC 59.961 66.667 0.00 0.00 0.00 4.79
3722 9599 2.809010 GGCCTCGTACTGCTCCTC 59.191 66.667 0.00 0.00 0.00 3.71
3728 9605 1.329292 CTCGTACTGCTCCTCTTCTCG 59.671 57.143 0.00 0.00 0.00 4.04
3763 9640 3.584848 AGGTCATTCATATAGGCCTGGAC 59.415 47.826 17.99 9.42 0.00 4.02
3767 9644 4.346709 TCATTCATATAGGCCTGGACGAAA 59.653 41.667 17.99 3.00 0.00 3.46
3791 9668 1.625315 TGTGTGGATTGAGGACTCTGG 59.375 52.381 0.56 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.224769 CCAACTTGTGTGTCTATGGGGT 60.225 50.000 0.00 0.00 0.00 4.95
4 5 3.074412 GACCAACTTGTGTGTCTATGGG 58.926 50.000 0.00 0.00 0.00 4.00
5 6 3.738982 TGACCAACTTGTGTGTCTATGG 58.261 45.455 0.00 0.00 31.99 2.74
6 7 5.469760 TCAATGACCAACTTGTGTGTCTATG 59.530 40.000 0.00 0.00 31.99 2.23
7 8 5.620206 TCAATGACCAACTTGTGTGTCTAT 58.380 37.500 0.00 0.00 31.99 1.98
8 9 5.029807 TCAATGACCAACTTGTGTGTCTA 57.970 39.130 0.00 0.00 31.99 2.59
9 10 3.884895 TCAATGACCAACTTGTGTGTCT 58.115 40.909 0.00 0.00 31.99 3.41
10 11 4.516698 AGATCAATGACCAACTTGTGTGTC 59.483 41.667 0.00 0.00 0.00 3.67
11 12 4.464008 AGATCAATGACCAACTTGTGTGT 58.536 39.130 0.00 0.00 0.00 3.72
12 13 5.443185 AAGATCAATGACCAACTTGTGTG 57.557 39.130 0.00 0.00 0.00 3.82
13 14 6.469782 AAAAGATCAATGACCAACTTGTGT 57.530 33.333 0.00 0.00 0.00 3.72
14 15 6.583806 GCTAAAAGATCAATGACCAACTTGTG 59.416 38.462 0.00 0.00 0.00 3.33
15 16 6.491403 AGCTAAAAGATCAATGACCAACTTGT 59.509 34.615 0.00 0.00 0.00 3.16
16 17 6.805271 CAGCTAAAAGATCAATGACCAACTTG 59.195 38.462 0.00 0.00 0.00 3.16
17 18 6.491403 ACAGCTAAAAGATCAATGACCAACTT 59.509 34.615 0.00 0.00 0.00 2.66
18 19 6.006449 ACAGCTAAAAGATCAATGACCAACT 58.994 36.000 0.00 0.00 0.00 3.16
19 20 6.088824 CACAGCTAAAAGATCAATGACCAAC 58.911 40.000 0.00 0.00 0.00 3.77
20 21 5.769662 ACACAGCTAAAAGATCAATGACCAA 59.230 36.000 0.00 0.00 0.00 3.67
21 22 5.181811 CACACAGCTAAAAGATCAATGACCA 59.818 40.000 0.00 0.00 0.00 4.02
22 23 5.634896 CACACAGCTAAAAGATCAATGACC 58.365 41.667 0.00 0.00 0.00 4.02
23 24 5.091431 GCACACAGCTAAAAGATCAATGAC 58.909 41.667 0.00 0.00 41.15 3.06
24 25 4.142838 CGCACACAGCTAAAAGATCAATGA 60.143 41.667 0.00 0.00 42.61 2.57
25 26 4.093514 CGCACACAGCTAAAAGATCAATG 58.906 43.478 0.00 0.00 42.61 2.82
26 27 3.127548 CCGCACACAGCTAAAAGATCAAT 59.872 43.478 0.00 0.00 42.61 2.57
27 28 2.483877 CCGCACACAGCTAAAAGATCAA 59.516 45.455 0.00 0.00 42.61 2.57
28 29 2.076100 CCGCACACAGCTAAAAGATCA 58.924 47.619 0.00 0.00 42.61 2.92
29 30 2.076863 ACCGCACACAGCTAAAAGATC 58.923 47.619 0.00 0.00 42.61 2.75
30 31 1.806542 CACCGCACACAGCTAAAAGAT 59.193 47.619 0.00 0.00 42.61 2.40
31 32 1.225855 CACCGCACACAGCTAAAAGA 58.774 50.000 0.00 0.00 42.61 2.52
32 33 0.385974 GCACCGCACACAGCTAAAAG 60.386 55.000 0.00 0.00 42.61 2.27
33 34 1.652012 GCACCGCACACAGCTAAAA 59.348 52.632 0.00 0.00 42.61 1.52
34 35 2.258013 GGCACCGCACACAGCTAAA 61.258 57.895 0.00 0.00 42.61 1.85
35 36 2.668212 GGCACCGCACACAGCTAA 60.668 61.111 0.00 0.00 42.61 3.09
36 37 4.697756 GGGCACCGCACACAGCTA 62.698 66.667 0.00 0.00 40.86 3.32
48 49 2.290577 GGATTATGATGGAGGAGGGCAC 60.291 54.545 0.00 0.00 0.00 5.01
49 50 1.988107 GGATTATGATGGAGGAGGGCA 59.012 52.381 0.00 0.00 0.00 5.36
50 51 1.988107 TGGATTATGATGGAGGAGGGC 59.012 52.381 0.00 0.00 0.00 5.19
51 52 2.307098 GGTGGATTATGATGGAGGAGGG 59.693 54.545 0.00 0.00 0.00 4.30
52 53 3.254960 AGGTGGATTATGATGGAGGAGG 58.745 50.000 0.00 0.00 0.00 4.30
53 54 3.056250 CGAGGTGGATTATGATGGAGGAG 60.056 52.174 0.00 0.00 0.00 3.69
54 55 2.899900 CGAGGTGGATTATGATGGAGGA 59.100 50.000 0.00 0.00 0.00 3.71
55 56 2.027745 CCGAGGTGGATTATGATGGAGG 60.028 54.545 0.00 0.00 42.00 4.30
56 57 2.634940 ACCGAGGTGGATTATGATGGAG 59.365 50.000 0.00 0.00 42.00 3.86
57 58 2.632996 GACCGAGGTGGATTATGATGGA 59.367 50.000 0.00 0.00 42.00 3.41
58 59 2.368548 TGACCGAGGTGGATTATGATGG 59.631 50.000 0.00 0.00 42.00 3.51
59 60 3.751479 TGACCGAGGTGGATTATGATG 57.249 47.619 0.00 0.00 42.00 3.07
60 61 5.163509 CGATATGACCGAGGTGGATTATGAT 60.164 44.000 0.00 0.00 42.00 2.45
61 62 4.157840 CGATATGACCGAGGTGGATTATGA 59.842 45.833 0.00 0.00 42.00 2.15
62 63 4.082190 ACGATATGACCGAGGTGGATTATG 60.082 45.833 0.00 0.00 42.00 1.90
63 64 4.087182 ACGATATGACCGAGGTGGATTAT 58.913 43.478 0.00 0.00 42.00 1.28
64 65 3.493334 ACGATATGACCGAGGTGGATTA 58.507 45.455 0.00 0.00 42.00 1.75
65 66 2.317040 ACGATATGACCGAGGTGGATT 58.683 47.619 0.00 0.00 42.00 3.01
66 67 1.996798 ACGATATGACCGAGGTGGAT 58.003 50.000 0.00 0.00 42.00 3.41
67 68 2.501261 CTACGATATGACCGAGGTGGA 58.499 52.381 0.00 0.00 42.00 4.02
68 69 1.068472 GCTACGATATGACCGAGGTGG 60.068 57.143 0.00 0.00 46.41 4.61
69 70 1.399855 CGCTACGATATGACCGAGGTG 60.400 57.143 0.00 0.00 0.00 4.00
70 71 0.873054 CGCTACGATATGACCGAGGT 59.127 55.000 0.00 0.00 0.00 3.85
71 72 0.168348 CCGCTACGATATGACCGAGG 59.832 60.000 0.00 0.00 0.00 4.63
72 73 0.873054 ACCGCTACGATATGACCGAG 59.127 55.000 0.00 0.00 0.00 4.63
73 74 0.589708 CACCGCTACGATATGACCGA 59.410 55.000 0.00 0.00 0.00 4.69
74 75 1.002250 GCACCGCTACGATATGACCG 61.002 60.000 0.00 0.00 0.00 4.79
75 76 0.314302 AGCACCGCTACGATATGACC 59.686 55.000 0.00 0.00 36.99 4.02
76 77 2.135664 AAGCACCGCTACGATATGAC 57.864 50.000 0.00 0.00 38.25 3.06
77 78 2.228103 CCTAAGCACCGCTACGATATGA 59.772 50.000 0.00 0.00 38.25 2.15
78 79 2.596452 CCTAAGCACCGCTACGATATG 58.404 52.381 0.00 0.00 38.25 1.78
79 80 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
80 81 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
81 82 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
82 83 2.493030 GCCTAAGCACCGCTACGA 59.507 61.111 0.00 0.00 38.25 3.43
83 84 2.877360 TTCGCCTAAGCACCGCTACG 62.877 60.000 0.00 0.00 38.25 3.51
84 85 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
85 86 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
86 87 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
99 100 4.124351 TACCGACGCAGGGCTTCG 62.124 66.667 9.73 9.73 47.00 3.79
100 101 2.202756 CTACCGACGCAGGGCTTC 60.203 66.667 1.73 0.00 35.02 3.86
101 102 4.452733 GCTACCGACGCAGGGCTT 62.453 66.667 1.73 0.00 35.02 4.35
103 104 4.752879 TTGCTACCGACGCAGGGC 62.753 66.667 1.73 0.00 38.80 5.19
104 105 2.813908 GTTGCTACCGACGCAGGG 60.814 66.667 1.73 0.00 38.80 4.45
105 106 1.421410 GATGTTGCTACCGACGCAGG 61.421 60.000 0.00 0.00 38.80 4.85
106 107 0.735978 TGATGTTGCTACCGACGCAG 60.736 55.000 0.00 0.00 38.80 5.18
107 108 0.108377 ATGATGTTGCTACCGACGCA 60.108 50.000 0.00 0.00 35.22 5.24
108 109 0.577269 GATGATGTTGCTACCGACGC 59.423 55.000 0.00 0.00 0.00 5.19
109 110 1.588404 GTGATGATGTTGCTACCGACG 59.412 52.381 0.00 0.00 0.00 5.12
110 111 1.933853 GGTGATGATGTTGCTACCGAC 59.066 52.381 0.00 0.00 0.00 4.79
111 112 2.309528 GGTGATGATGTTGCTACCGA 57.690 50.000 0.00 0.00 0.00 4.69
112 113 0.930310 CGGTGATGATGTTGCTACCG 59.070 55.000 0.00 0.00 43.93 4.02
113 114 1.933853 GACGGTGATGATGTTGCTACC 59.066 52.381 0.00 0.00 0.00 3.18
114 115 2.616960 TGACGGTGATGATGTTGCTAC 58.383 47.619 0.00 0.00 0.00 3.58
115 116 3.457234 GATGACGGTGATGATGTTGCTA 58.543 45.455 0.00 0.00 0.00 3.49
116 117 2.283298 GATGACGGTGATGATGTTGCT 58.717 47.619 0.00 0.00 0.00 3.91
117 118 1.004610 CGATGACGGTGATGATGTTGC 60.005 52.381 0.00 0.00 35.72 4.17
118 119 1.004610 GCGATGACGGTGATGATGTTG 60.005 52.381 0.00 0.00 40.15 3.33
119 120 1.290203 GCGATGACGGTGATGATGTT 58.710 50.000 0.00 0.00 40.15 2.71
120 121 0.871592 CGCGATGACGGTGATGATGT 60.872 55.000 0.00 0.00 40.15 3.06
121 122 0.871592 ACGCGATGACGGTGATGATG 60.872 55.000 15.93 0.00 40.15 3.07
122 123 0.179111 AACGCGATGACGGTGATGAT 60.179 50.000 15.93 0.00 40.15 2.45
123 124 1.214325 AACGCGATGACGGTGATGA 59.786 52.632 15.93 0.00 40.15 2.92
124 125 3.780693 AACGCGATGACGGTGATG 58.219 55.556 15.93 0.00 40.15 3.07
128 129 2.803670 CGACAACGCGATGACGGT 60.804 61.111 27.26 10.31 40.15 4.83
129 130 2.803670 ACGACAACGCGATGACGG 60.804 61.111 34.10 21.16 41.56 4.79
130 131 2.386491 CACGACAACGCGATGACG 59.614 61.111 31.21 31.21 43.96 4.35
131 132 2.093983 GCACGACAACGCGATGAC 59.906 61.111 23.89 15.91 43.96 3.06
132 133 2.049526 AGCACGACAACGCGATGA 60.050 55.556 23.89 0.00 43.96 2.92
133 134 2.094539 CAGCACGACAACGCGATG 59.905 61.111 15.93 15.61 43.96 3.84
134 135 2.049526 TCAGCACGACAACGCGAT 60.050 55.556 15.93 0.00 43.96 4.58
135 136 3.028019 GTCAGCACGACAACGCGA 61.028 61.111 15.93 0.00 44.69 5.87
144 145 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
145 146 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
146 147 1.228894 AGGGAGAGTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
147 148 3.701454 AGGGAGAGTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
151 152 1.596895 GCTTCGAGGGAGAGTTCCGT 61.597 60.000 0.00 0.00 45.04 4.69
152 153 1.139947 GCTTCGAGGGAGAGTTCCG 59.860 63.158 0.00 0.00 45.04 4.30
153 154 0.458260 GAGCTTCGAGGGAGAGTTCC 59.542 60.000 0.00 0.00 43.23 3.62
154 155 1.470051 AGAGCTTCGAGGGAGAGTTC 58.530 55.000 0.00 0.00 0.00 3.01
155 156 2.025699 AGTAGAGCTTCGAGGGAGAGTT 60.026 50.000 0.00 0.00 0.00 3.01
156 157 1.562475 AGTAGAGCTTCGAGGGAGAGT 59.438 52.381 0.00 0.00 0.00 3.24
157 158 1.946768 CAGTAGAGCTTCGAGGGAGAG 59.053 57.143 0.00 0.00 0.00 3.20
158 159 1.408961 CCAGTAGAGCTTCGAGGGAGA 60.409 57.143 0.00 0.00 0.00 3.71
159 160 1.028905 CCAGTAGAGCTTCGAGGGAG 58.971 60.000 0.00 0.00 0.00 4.30
160 161 0.624254 TCCAGTAGAGCTTCGAGGGA 59.376 55.000 0.00 0.00 0.00 4.20
161 162 1.611491 GATCCAGTAGAGCTTCGAGGG 59.389 57.143 0.00 0.00 0.00 4.30
162 163 1.265635 CGATCCAGTAGAGCTTCGAGG 59.734 57.143 0.00 0.00 29.17 4.63
163 164 1.944024 ACGATCCAGTAGAGCTTCGAG 59.056 52.381 7.14 0.00 31.51 4.04
164 165 1.671328 CACGATCCAGTAGAGCTTCGA 59.329 52.381 7.14 0.00 31.51 3.71
165 166 1.671328 TCACGATCCAGTAGAGCTTCG 59.329 52.381 0.00 0.00 32.83 3.79
166 167 2.685897 ACTCACGATCCAGTAGAGCTTC 59.314 50.000 0.00 0.00 0.00 3.86
167 168 2.729194 ACTCACGATCCAGTAGAGCTT 58.271 47.619 0.00 0.00 0.00 3.74
168 169 2.428544 ACTCACGATCCAGTAGAGCT 57.571 50.000 0.00 0.00 0.00 4.09
169 170 2.539953 CGAACTCACGATCCAGTAGAGC 60.540 54.545 0.00 0.00 35.09 4.09
170 171 2.539953 GCGAACTCACGATCCAGTAGAG 60.540 54.545 0.00 0.00 35.09 2.43
171 172 1.400846 GCGAACTCACGATCCAGTAGA 59.599 52.381 0.00 0.00 35.09 2.59
172 173 1.828832 GCGAACTCACGATCCAGTAG 58.171 55.000 0.00 0.00 35.09 2.57
173 174 0.098200 CGCGAACTCACGATCCAGTA 59.902 55.000 0.00 0.00 35.09 2.74
174 175 1.154016 CGCGAACTCACGATCCAGT 60.154 57.895 0.00 0.00 35.09 4.00
175 176 1.874019 CCGCGAACTCACGATCCAG 60.874 63.158 8.23 0.00 35.09 3.86
176 177 2.180769 CCGCGAACTCACGATCCA 59.819 61.111 8.23 0.00 35.09 3.41
177 178 2.582498 CCCGCGAACTCACGATCC 60.582 66.667 8.23 0.00 35.09 3.36
178 179 1.872679 GTCCCGCGAACTCACGATC 60.873 63.158 8.23 0.00 35.09 3.69
179 180 2.181021 GTCCCGCGAACTCACGAT 59.819 61.111 8.23 0.00 35.09 3.73
180 181 4.394078 CGTCCCGCGAACTCACGA 62.394 66.667 8.23 0.00 44.77 4.35
181 182 4.695231 ACGTCCCGCGAACTCACG 62.695 66.667 8.23 10.62 44.77 4.35
182 183 2.804090 GACGTCCCGCGAACTCAC 60.804 66.667 8.23 0.00 44.77 3.51
183 184 3.289062 TGACGTCCCGCGAACTCA 61.289 61.111 14.12 8.41 44.77 3.41
184 185 2.804090 GTGACGTCCCGCGAACTC 60.804 66.667 14.12 5.97 44.77 3.01
185 186 4.353437 GGTGACGTCCCGCGAACT 62.353 66.667 14.12 0.00 44.77 3.01
197 198 1.299926 ACACGTTCAGCTCGGTGAC 60.300 57.895 9.25 0.00 0.00 3.67
198 199 1.299850 CACACGTTCAGCTCGGTGA 60.300 57.895 9.25 0.00 34.24 4.02
199 200 2.943345 GCACACGTTCAGCTCGGTG 61.943 63.158 9.18 9.18 34.88 4.94
200 201 2.661866 GCACACGTTCAGCTCGGT 60.662 61.111 0.00 0.00 0.00 4.69
201 202 2.661537 TGCACACGTTCAGCTCGG 60.662 61.111 5.40 0.00 0.00 4.63
202 203 1.010935 ATCTGCACACGTTCAGCTCG 61.011 55.000 5.40 0.00 0.00 5.03
203 204 0.718343 GATCTGCACACGTTCAGCTC 59.282 55.000 5.40 2.32 0.00 4.09
204 205 1.010935 CGATCTGCACACGTTCAGCT 61.011 55.000 5.40 0.00 0.00 4.24
205 206 1.417592 CGATCTGCACACGTTCAGC 59.582 57.895 4.78 1.26 0.00 4.26
206 207 1.417592 GCGATCTGCACACGTTCAG 59.582 57.895 4.93 0.00 45.45 3.02
207 208 3.549467 GCGATCTGCACACGTTCA 58.451 55.556 4.93 0.00 45.45 3.18
216 217 1.875813 CGACACCTCTGCGATCTGC 60.876 63.158 3.07 3.07 46.70 4.26
217 218 0.733150 TACGACACCTCTGCGATCTG 59.267 55.000 0.00 0.00 0.00 2.90
218 219 1.335182 CATACGACACCTCTGCGATCT 59.665 52.381 0.00 0.00 0.00 2.75
219 220 1.065701 ACATACGACACCTCTGCGATC 59.934 52.381 0.00 0.00 0.00 3.69
220 221 1.103803 ACATACGACACCTCTGCGAT 58.896 50.000 0.00 0.00 0.00 4.58
221 222 0.885879 AACATACGACACCTCTGCGA 59.114 50.000 0.00 0.00 0.00 5.10
222 223 1.269166 GAACATACGACACCTCTGCG 58.731 55.000 0.00 0.00 0.00 5.18
223 224 1.269166 CGAACATACGACACCTCTGC 58.731 55.000 0.00 0.00 35.09 4.26
224 225 1.201647 ACCGAACATACGACACCTCTG 59.798 52.381 0.00 0.00 35.09 3.35
225 226 1.542492 ACCGAACATACGACACCTCT 58.458 50.000 0.00 0.00 35.09 3.69
226 227 2.421424 AGTACCGAACATACGACACCTC 59.579 50.000 0.00 0.00 35.09 3.85
227 228 2.440409 AGTACCGAACATACGACACCT 58.560 47.619 0.00 0.00 35.09 4.00
228 229 2.927553 AGTACCGAACATACGACACC 57.072 50.000 0.00 0.00 35.09 4.16
229 230 3.623060 TCCTAGTACCGAACATACGACAC 59.377 47.826 0.00 0.00 35.09 3.67
230 231 3.872696 TCCTAGTACCGAACATACGACA 58.127 45.455 0.00 0.00 35.09 4.35
231 232 4.376819 CGATCCTAGTACCGAACATACGAC 60.377 50.000 0.00 0.00 35.09 4.34
232 233 3.742882 CGATCCTAGTACCGAACATACGA 59.257 47.826 0.00 0.00 35.09 3.43
233 234 3.120408 CCGATCCTAGTACCGAACATACG 60.120 52.174 0.00 0.00 0.00 3.06
234 235 3.817647 ACCGATCCTAGTACCGAACATAC 59.182 47.826 0.00 0.00 0.00 2.39
235 236 4.067896 GACCGATCCTAGTACCGAACATA 58.932 47.826 0.00 0.00 0.00 2.29
236 237 2.883386 GACCGATCCTAGTACCGAACAT 59.117 50.000 0.00 0.00 0.00 2.71
237 238 2.292267 GACCGATCCTAGTACCGAACA 58.708 52.381 0.00 0.00 0.00 3.18
238 239 1.262683 CGACCGATCCTAGTACCGAAC 59.737 57.143 0.00 0.00 0.00 3.95
239 240 1.138859 TCGACCGATCCTAGTACCGAA 59.861 52.381 0.00 0.00 0.00 4.30
240 241 0.752658 TCGACCGATCCTAGTACCGA 59.247 55.000 0.00 0.00 0.00 4.69
241 242 1.731160 GATCGACCGATCCTAGTACCG 59.269 57.143 18.61 0.00 43.71 4.02
242 243 1.731160 CGATCGACCGATCCTAGTACC 59.269 57.143 22.02 1.24 45.95 3.34
243 244 2.157279 CACGATCGACCGATCCTAGTAC 59.843 54.545 24.34 1.87 45.95 2.73
244 245 2.036346 TCACGATCGACCGATCCTAGTA 59.964 50.000 24.34 5.51 45.95 1.82
245 246 1.202615 TCACGATCGACCGATCCTAGT 60.203 52.381 24.34 13.76 45.95 2.57
246 247 1.509703 TCACGATCGACCGATCCTAG 58.490 55.000 24.34 13.23 45.95 3.02
247 248 1.871676 CTTCACGATCGACCGATCCTA 59.128 52.381 24.34 8.71 45.95 2.94
248 249 0.663688 CTTCACGATCGACCGATCCT 59.336 55.000 24.34 11.28 45.95 3.24
249 250 0.935366 GCTTCACGATCGACCGATCC 60.935 60.000 24.34 7.37 45.95 3.36
250 251 0.935366 GGCTTCACGATCGACCGATC 60.935 60.000 24.34 19.20 45.42 3.69
251 252 1.065928 GGCTTCACGATCGACCGAT 59.934 57.895 24.34 4.42 37.59 4.18
252 253 2.488355 GGCTTCACGATCGACCGA 59.512 61.111 24.34 12.15 0.00 4.69
253 254 2.313717 TACGGCTTCACGATCGACCG 62.314 60.000 24.34 24.61 45.86 4.79
254 255 0.864797 GTACGGCTTCACGATCGACC 60.865 60.000 24.34 13.13 37.61 4.79
255 256 1.192436 CGTACGGCTTCACGATCGAC 61.192 60.000 24.34 4.86 40.56 4.20
256 257 1.061411 CGTACGGCTTCACGATCGA 59.939 57.895 24.34 0.00 40.56 3.59
257 258 1.061411 TCGTACGGCTTCACGATCG 59.939 57.895 16.52 14.88 41.89 3.69
260 261 0.443869 GTAGTCGTACGGCTTCACGA 59.556 55.000 29.28 6.42 44.32 4.35
261 262 0.166597 TGTAGTCGTACGGCTTCACG 59.833 55.000 29.28 0.00 39.48 4.35
262 263 2.159476 TGATGTAGTCGTACGGCTTCAC 60.159 50.000 29.28 20.93 30.44 3.18
263 264 2.086094 TGATGTAGTCGTACGGCTTCA 58.914 47.619 29.28 28.26 32.11 3.02
264 265 2.838386 TGATGTAGTCGTACGGCTTC 57.162 50.000 29.28 23.26 30.95 3.86
265 266 2.416431 GGTTGATGTAGTCGTACGGCTT 60.416 50.000 29.28 10.43 30.95 4.35
266 267 1.133790 GGTTGATGTAGTCGTACGGCT 59.866 52.381 27.24 27.24 30.95 5.52
267 268 1.553308 GGTTGATGTAGTCGTACGGC 58.447 55.000 12.98 12.98 30.95 5.68
268 269 1.818850 CGGTTGATGTAGTCGTACGG 58.181 55.000 16.52 0.00 30.95 4.02
269 270 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
270 271 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
271 272 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
272 273 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
273 274 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
274 275 1.389106 GACAACGCGGTTGATGTAGTC 59.611 52.381 22.26 10.01 45.28 2.59
275 276 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
276 277 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
277 278 2.087501 ATGACAACGCGGTTGATGTA 57.912 45.000 22.26 9.68 45.28 2.29
278 279 1.999735 CTATGACAACGCGGTTGATGT 59.000 47.619 22.26 13.84 45.28 3.06
279 280 1.267532 GCTATGACAACGCGGTTGATG 60.268 52.381 22.26 11.18 45.28 3.07
280 281 1.006832 GCTATGACAACGCGGTTGAT 58.993 50.000 22.26 12.10 45.28 2.57
281 282 1.348538 CGCTATGACAACGCGGTTGA 61.349 55.000 22.26 6.79 45.28 3.18
283 284 2.736682 GCGCTATGACAACGCGGTT 61.737 57.895 12.47 0.00 46.31 4.44
284 285 3.186047 GCGCTATGACAACGCGGT 61.186 61.111 12.47 0.00 46.31 5.68
288 289 0.025513 GCAGAAGCGCTATGACAACG 59.974 55.000 22.76 3.46 0.00 4.10
289 290 3.885777 GCAGAAGCGCTATGACAAC 57.114 52.632 22.76 4.82 0.00 3.32
300 301 0.458716 GTACCCTCGTGAGCAGAAGC 60.459 60.000 0.00 0.00 42.56 3.86
301 302 0.179161 CGTACCCTCGTGAGCAGAAG 60.179 60.000 0.00 0.00 0.00 2.85
302 303 0.892358 ACGTACCCTCGTGAGCAGAA 60.892 55.000 0.00 0.00 42.56 3.02
303 304 1.303074 ACGTACCCTCGTGAGCAGA 60.303 57.895 0.00 0.00 42.56 4.26
304 305 3.275088 ACGTACCCTCGTGAGCAG 58.725 61.111 0.00 0.00 42.56 4.24
310 311 2.032528 TCGTCCACGTACCCTCGT 59.967 61.111 0.00 0.00 45.10 4.18
311 312 2.327343 TGTCGTCCACGTACCCTCG 61.327 63.158 0.00 0.00 40.80 4.63
312 313 1.211190 GTGTCGTCCACGTACCCTC 59.789 63.158 0.00 0.00 40.80 4.30
313 314 3.359002 GTGTCGTCCACGTACCCT 58.641 61.111 0.00 0.00 40.80 4.34
320 321 1.596895 GAGGGGAGAGTGTCGTCCAC 61.597 65.000 0.60 0.60 44.89 4.02
321 322 1.304217 GAGGGGAGAGTGTCGTCCA 60.304 63.158 2.08 0.00 34.14 4.02
322 323 1.000646 AGAGGGGAGAGTGTCGTCC 60.001 63.158 0.00 0.00 0.00 4.79
323 324 1.370587 CGAGAGGGGAGAGTGTCGTC 61.371 65.000 0.00 0.00 0.00 4.20
324 325 1.377463 CGAGAGGGGAGAGTGTCGT 60.377 63.158 0.00 0.00 0.00 4.34
325 326 0.961358 AACGAGAGGGGAGAGTGTCG 60.961 60.000 0.00 0.00 35.69 4.35
326 327 0.528470 CAACGAGAGGGGAGAGTGTC 59.472 60.000 0.00 0.00 0.00 3.67
327 328 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
328 329 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
329 330 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
330 331 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
331 332 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
332 333 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
333 334 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
334 335 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
335 336 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
336 337 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
337 338 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
338 339 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
339 340 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
340 341 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
341 342 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
342 343 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
343 344 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
344 345 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
345 346 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
346 347 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
347 348 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
348 349 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
349 350 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
350 351 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
351 352 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
352 353 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
353 354 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
354 355 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
355 356 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
356 357 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
357 358 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
358 359 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
359 360 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
360 361 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
361 362 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
362 363 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
363 364 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
364 365 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
365 366 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
366 367 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
383 384 8.689972 TGTTGGGGAACGTAGTAATTTTAAAAA 58.310 29.630 4.44 0.00 45.00 1.94
384 385 8.230472 TGTTGGGGAACGTAGTAATTTTAAAA 57.770 30.769 2.51 2.51 45.00 1.52
385 386 7.814264 TGTTGGGGAACGTAGTAATTTTAAA 57.186 32.000 0.00 0.00 45.00 1.52
386 387 7.501892 ACTTGTTGGGGAACGTAGTAATTTTAA 59.498 33.333 0.00 0.00 45.00 1.52
387 388 6.997476 ACTTGTTGGGGAACGTAGTAATTTTA 59.003 34.615 0.00 0.00 45.00 1.52
388 389 5.829391 ACTTGTTGGGGAACGTAGTAATTTT 59.171 36.000 0.00 0.00 45.00 1.82
389 390 5.239963 CACTTGTTGGGGAACGTAGTAATTT 59.760 40.000 0.00 0.00 45.00 1.82
390 391 4.758165 CACTTGTTGGGGAACGTAGTAATT 59.242 41.667 0.00 0.00 45.00 1.40
391 392 4.202388 ACACTTGTTGGGGAACGTAGTAAT 60.202 41.667 0.00 0.00 45.00 1.89
392 393 3.134442 ACACTTGTTGGGGAACGTAGTAA 59.866 43.478 0.00 0.00 45.00 2.24
393 394 2.699846 ACACTTGTTGGGGAACGTAGTA 59.300 45.455 0.00 0.00 45.00 1.82
395 396 2.140717 GACACTTGTTGGGGAACGTAG 58.859 52.381 0.00 0.00 0.00 3.51
396 397 1.538634 CGACACTTGTTGGGGAACGTA 60.539 52.381 0.00 0.00 0.00 3.57
397 398 0.812412 CGACACTTGTTGGGGAACGT 60.812 55.000 0.00 0.00 0.00 3.99
398 399 1.938861 CGACACTTGTTGGGGAACG 59.061 57.895 0.00 0.00 0.00 3.95
399 400 1.652563 GCGACACTTGTTGGGGAAC 59.347 57.895 0.00 0.00 0.00 3.62
400 401 1.527380 GGCGACACTTGTTGGGGAA 60.527 57.895 0.00 0.00 0.00 3.97
401 402 2.112297 GGCGACACTTGTTGGGGA 59.888 61.111 0.00 0.00 0.00 4.81
402 403 2.983592 GGGCGACACTTGTTGGGG 60.984 66.667 0.00 0.00 0.00 4.96
403 404 2.113139 AGGGCGACACTTGTTGGG 59.887 61.111 0.00 0.00 0.00 4.12
404 405 2.908073 GCAGGGCGACACTTGTTGG 61.908 63.158 0.00 0.00 0.00 3.77
405 406 1.723608 TTGCAGGGCGACACTTGTTG 61.724 55.000 0.00 0.00 0.00 3.33
406 407 0.823356 ATTGCAGGGCGACACTTGTT 60.823 50.000 0.00 0.00 0.00 2.83
407 408 0.036164 TATTGCAGGGCGACACTTGT 59.964 50.000 0.00 0.00 0.00 3.16
408 409 0.447801 GTATTGCAGGGCGACACTTG 59.552 55.000 0.00 0.00 0.00 3.16
409 410 0.324943 AGTATTGCAGGGCGACACTT 59.675 50.000 0.00 0.00 0.00 3.16
428 429 2.258591 GTCGAAGTCGGAGCTGCA 59.741 61.111 5.91 0.00 40.29 4.41
429 430 2.507324 GGTCGAAGTCGGAGCTGC 60.507 66.667 0.00 0.00 40.29 5.25
430 431 1.137825 GAGGTCGAAGTCGGAGCTG 59.862 63.158 0.00 0.00 40.29 4.24
460 461 2.078914 CCTTCGTTGTCGACCGTCG 61.079 63.158 14.94 14.94 46.03 5.12
471 472 0.878961 GGTCGTGACTTGCCTTCGTT 60.879 55.000 0.00 0.00 0.00 3.85
474 475 0.951040 CAGGGTCGTGACTTGCCTTC 60.951 60.000 0.00 0.00 0.00 3.46
528 530 2.127383 GTGCGGTTGTAGCGTTGC 60.127 61.111 0.15 0.00 41.74 4.17
560 562 1.430632 GCGACATCATGGTTGGCAG 59.569 57.895 0.00 0.00 0.00 4.85
561 563 2.397754 CGCGACATCATGGTTGGCA 61.398 57.895 0.00 0.00 0.00 4.92
565 567 2.739704 CGTGCGCGACATCATGGTT 61.740 57.895 16.08 0.00 41.33 3.67
570 572 4.350441 TGGACGTGCGCGACATCA 62.350 61.111 28.73 11.75 42.00 3.07
578 580 3.114616 CTTGAGGCTGGACGTGCG 61.115 66.667 1.60 0.00 0.00 5.34
597 599 0.614697 TCGTGATCCCTCTTGCTCCA 60.615 55.000 0.00 0.00 0.00 3.86
598 600 0.755686 ATCGTGATCCCTCTTGCTCC 59.244 55.000 0.00 0.00 0.00 4.70
607 609 3.134458 GACCATTGAAGATCGTGATCCC 58.866 50.000 6.24 0.43 38.58 3.85
623 625 6.080648 TCTTATTATTACACGAGCGACCAT 57.919 37.500 0.00 0.00 0.00 3.55
626 628 5.517904 ACCTCTTATTATTACACGAGCGAC 58.482 41.667 0.00 0.00 0.00 5.19
628 630 6.914215 TGTTACCTCTTATTATTACACGAGCG 59.086 38.462 0.00 0.00 0.00 5.03
674 676 1.265236 TGGGCCCATTGATTGTGTTC 58.735 50.000 24.45 0.00 0.00 3.18
717 719 1.498264 TGGATGGGCCCATTGATTTG 58.502 50.000 37.69 0.00 36.70 2.32
719 721 1.724545 CATGGATGGGCCCATTGATT 58.275 50.000 37.69 17.76 44.11 2.57
720 722 0.178915 CCATGGATGGGCCCATTGAT 60.179 55.000 37.69 27.33 44.11 2.57
721 723 1.233659 CCATGGATGGGCCCATTGA 59.766 57.895 37.69 26.38 44.11 2.57
722 724 3.879844 CCATGGATGGGCCCATTG 58.120 61.111 37.69 29.65 44.11 2.82
736 738 0.889994 ATTGTGTTCATGCACGCCAT 59.110 45.000 6.58 0.00 41.94 4.40
737 739 0.240678 GATTGTGTTCATGCACGCCA 59.759 50.000 6.58 0.00 41.94 5.69
738 740 0.240678 TGATTGTGTTCATGCACGCC 59.759 50.000 6.58 0.00 41.94 5.68
739 741 2.049077 TTGATTGTGTTCATGCACGC 57.951 45.000 1.81 1.81 41.94 5.34
740 742 2.343246 GCATTGATTGTGTTCATGCACG 59.657 45.455 0.00 0.00 41.94 5.34
741 743 3.581755 AGCATTGATTGTGTTCATGCAC 58.418 40.909 5.32 0.00 39.65 4.57
742 744 3.945981 AGCATTGATTGTGTTCATGCA 57.054 38.095 5.32 0.00 34.96 3.96
743 745 6.897259 AATAAGCATTGATTGTGTTCATGC 57.103 33.333 0.00 0.00 33.82 4.06
744 746 8.810427 GGTAAATAAGCATTGATTGTGTTCATG 58.190 33.333 0.00 0.00 0.00 3.07
745 747 8.752187 AGGTAAATAAGCATTGATTGTGTTCAT 58.248 29.630 0.00 0.00 0.00 2.57
746 748 8.028354 CAGGTAAATAAGCATTGATTGTGTTCA 58.972 33.333 0.00 0.00 0.00 3.18
747 749 7.009540 GCAGGTAAATAAGCATTGATTGTGTTC 59.990 37.037 0.00 0.00 0.00 3.18
748 750 6.813152 GCAGGTAAATAAGCATTGATTGTGTT 59.187 34.615 0.00 0.00 0.00 3.32
749 751 6.153340 AGCAGGTAAATAAGCATTGATTGTGT 59.847 34.615 0.00 0.00 0.00 3.72
750 752 6.567050 AGCAGGTAAATAAGCATTGATTGTG 58.433 36.000 0.00 0.00 0.00 3.33
751 753 6.458751 CGAGCAGGTAAATAAGCATTGATTGT 60.459 38.462 0.00 0.00 0.00 2.71
752 754 5.911280 CGAGCAGGTAAATAAGCATTGATTG 59.089 40.000 0.00 0.00 0.00 2.67
753 755 5.506317 GCGAGCAGGTAAATAAGCATTGATT 60.506 40.000 0.00 0.00 0.00 2.57
754 756 4.023707 GCGAGCAGGTAAATAAGCATTGAT 60.024 41.667 0.00 0.00 0.00 2.57
755 757 3.312421 GCGAGCAGGTAAATAAGCATTGA 59.688 43.478 0.00 0.00 0.00 2.57
756 758 3.548818 GGCGAGCAGGTAAATAAGCATTG 60.549 47.826 0.00 0.00 0.00 2.82
757 759 2.618709 GGCGAGCAGGTAAATAAGCATT 59.381 45.455 0.00 0.00 0.00 3.56
758 760 2.158755 AGGCGAGCAGGTAAATAAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
759 761 1.209504 AGGCGAGCAGGTAAATAAGCA 59.790 47.619 0.00 0.00 0.00 3.91
760 762 1.599542 CAGGCGAGCAGGTAAATAAGC 59.400 52.381 0.00 0.00 0.00 3.09
761 763 1.599542 GCAGGCGAGCAGGTAAATAAG 59.400 52.381 0.00 0.00 0.00 1.73
762 764 1.065782 TGCAGGCGAGCAGGTAAATAA 60.066 47.619 3.54 0.00 40.11 1.40
763 765 0.539518 TGCAGGCGAGCAGGTAAATA 59.460 50.000 3.54 0.00 40.11 1.40
764 766 1.299648 TGCAGGCGAGCAGGTAAAT 59.700 52.632 3.54 0.00 40.11 1.40
765 767 2.747022 TGCAGGCGAGCAGGTAAA 59.253 55.556 3.54 0.00 40.11 2.01
811 1972 9.956720 TCTTTTCTTCTTTGATGATGAAAGAAC 57.043 29.630 14.37 0.00 42.03 3.01
863 2024 4.872691 AGAGCAAATAAGAGTTCATGTCCG 59.127 41.667 0.00 0.00 0.00 4.79
876 2037 5.920193 AGCATAAGCCAAAGAGCAAATAA 57.080 34.783 0.00 0.00 43.56 1.40
878 2039 4.706476 TGTAGCATAAGCCAAAGAGCAAAT 59.294 37.500 0.00 0.00 43.56 2.32
914 2076 5.220510 CGCTGAAGCCGTGTTATGTTAAATA 60.221 40.000 0.00 0.00 37.91 1.40
915 2077 4.436852 CGCTGAAGCCGTGTTATGTTAAAT 60.437 41.667 0.00 0.00 37.91 1.40
919 4131 0.796312 CGCTGAAGCCGTGTTATGTT 59.204 50.000 0.00 0.00 37.91 2.71
921 4133 1.635844 TACGCTGAAGCCGTGTTATG 58.364 50.000 9.14 0.00 37.91 1.90
922 4134 2.201732 CATACGCTGAAGCCGTGTTAT 58.798 47.619 9.14 0.00 37.91 1.89
939 4151 7.224167 CACTAGGATCGTACTCGTATATGCATA 59.776 40.741 9.27 9.27 38.33 3.14
952 4164 2.165845 ACAGGCAACACTAGGATCGTAC 59.834 50.000 0.00 0.00 41.41 3.67
953 4165 2.453521 ACAGGCAACACTAGGATCGTA 58.546 47.619 0.00 0.00 41.41 3.43
954 4166 1.267121 ACAGGCAACACTAGGATCGT 58.733 50.000 0.00 0.00 41.41 3.73
955 4167 2.386661 AACAGGCAACACTAGGATCG 57.613 50.000 0.00 0.00 41.41 3.69
956 4168 2.162408 GCAAACAGGCAACACTAGGATC 59.838 50.000 0.00 0.00 41.41 3.36
957 4169 2.162681 GCAAACAGGCAACACTAGGAT 58.837 47.619 0.00 0.00 41.41 3.24
958 4170 1.142870 AGCAAACAGGCAACACTAGGA 59.857 47.619 0.00 0.00 41.41 2.94
959 4171 1.537202 GAGCAAACAGGCAACACTAGG 59.463 52.381 0.00 0.00 41.41 3.02
962 4174 0.463654 TCGAGCAAACAGGCAACACT 60.464 50.000 0.00 0.00 41.41 3.55
977 4189 0.602562 GATGGGCAGGAGATCTCGAG 59.397 60.000 16.46 5.93 0.00 4.04
1016 4228 1.080093 TACTGGTGCGCCGAAGAAG 60.080 57.895 12.58 5.37 37.67 2.85
1027 4239 4.143333 CTCGGGGGCGTACTGGTG 62.143 72.222 0.00 0.00 0.00 4.17
1028 4240 4.371417 TCTCGGGGGCGTACTGGT 62.371 66.667 0.00 0.00 0.00 4.00
1029 4241 3.834799 GTCTCGGGGGCGTACTGG 61.835 72.222 0.00 0.00 0.00 4.00
1030 4242 3.834799 GGTCTCGGGGGCGTACTG 61.835 72.222 0.00 0.00 0.00 2.74
1304 4516 3.618594 CAGAGTGTATTTGGTCATCACGG 59.381 47.826 0.00 0.00 34.71 4.94
1317 4529 2.370189 GCCCCATAAGCTCAGAGTGTAT 59.630 50.000 0.00 0.00 0.00 2.29
1374 4586 1.555992 CCACCAGGGGTAAACGTATGA 59.444 52.381 0.00 0.00 32.11 2.15
1469 5848 0.852777 CAAGACCGTCAAGACACACG 59.147 55.000 0.40 0.00 35.72 4.49
1536 5918 2.606272 GTCTTGGTGAAAGTTCGACGTT 59.394 45.455 0.00 0.00 37.18 3.99
1537 5919 2.159142 AGTCTTGGTGAAAGTTCGACGT 60.159 45.455 0.00 0.00 37.18 4.34
1740 6122 1.230324 AGTGAAGAAGCGCCTTGAAC 58.770 50.000 2.29 2.41 0.00 3.18
1777 6159 2.159028 TGACATCGTGATTATCCGGCAA 60.159 45.455 0.00 0.00 0.00 4.52
1790 6172 1.611977 TCGTGTTCTTCCTGACATCGT 59.388 47.619 0.00 0.00 0.00 3.73
2059 6441 9.139174 CGGCAAATTTTCTTGTAAAATATCTGT 57.861 29.630 0.00 0.00 30.38 3.41
2151 6535 1.436983 GCAATGGGTACGCTAGTGGC 61.437 60.000 11.59 3.21 37.64 5.01
2264 6648 9.074576 ACTATCGTAAACTCCATATGTGTATGA 57.925 33.333 1.24 0.00 40.12 2.15
2305 6943 6.338937 AGGATTCTCAAACATAGTTACGGAC 58.661 40.000 0.00 0.00 0.00 4.79
2418 7057 6.368791 TGTGCAGATCAGTTTATACAGTTCAC 59.631 38.462 0.00 0.00 0.00 3.18
2421 7060 6.183360 GCATGTGCAGATCAGTTTATACAGTT 60.183 38.462 0.00 0.00 41.59 3.16
2422 7061 5.295292 GCATGTGCAGATCAGTTTATACAGT 59.705 40.000 0.00 0.00 41.59 3.55
2423 7062 5.745514 GCATGTGCAGATCAGTTTATACAG 58.254 41.667 0.00 0.00 41.59 2.74
2448 8286 8.114359 TGAAAGAAGCAAAAACGTGAAAATAG 57.886 30.769 0.00 0.00 0.00 1.73
2462 8303 3.084039 AGGCGAATGATGAAAGAAGCAA 58.916 40.909 0.00 0.00 0.00 3.91
2463 8304 2.715046 AGGCGAATGATGAAAGAAGCA 58.285 42.857 0.00 0.00 0.00 3.91
2520 8361 8.508875 GGTATCAACCAACGAAGATAAAAAGAA 58.491 33.333 0.00 0.00 45.98 2.52
2546 8387 2.203280 TCAACACACGCCCTTGGG 60.203 61.111 0.32 0.32 0.00 4.12
2683 8540 1.531365 CTGCCTTTTGAGCCACCCA 60.531 57.895 0.00 0.00 0.00 4.51
2686 8543 1.288127 CTGCTGCCTTTTGAGCCAC 59.712 57.895 0.00 0.00 34.04 5.01
2695 8552 2.823147 GATGAGCGCTGCTGCCTT 60.823 61.111 18.48 0.00 39.88 4.35
2794 8651 2.035312 AGCCGACCGGACTAGTGT 59.965 61.111 9.46 0.00 37.50 3.55
2796 8653 0.683504 AATCAGCCGACCGGACTAGT 60.684 55.000 9.46 0.00 37.50 2.57
2815 8672 2.270434 AGATCCACCCTTGAGCCTTA 57.730 50.000 0.00 0.00 0.00 2.69
2817 8674 2.334023 GATAGATCCACCCTTGAGCCT 58.666 52.381 0.00 0.00 0.00 4.58
2818 8675 2.038295 CTGATAGATCCACCCTTGAGCC 59.962 54.545 0.00 0.00 0.00 4.70
2819 8676 2.549778 GCTGATAGATCCACCCTTGAGC 60.550 54.545 0.00 0.00 0.00 4.26
2821 8678 2.763039 TGCTGATAGATCCACCCTTGA 58.237 47.619 0.00 0.00 0.00 3.02
2822 8679 3.181447 ACATGCTGATAGATCCACCCTTG 60.181 47.826 0.00 0.00 0.00 3.61
2834 8704 2.433970 TGGATCGGTTCACATGCTGATA 59.566 45.455 0.00 0.00 31.49 2.15
2838 8708 0.615331 ACTGGATCGGTTCACATGCT 59.385 50.000 0.00 0.00 0.00 3.79
3017 8888 1.061276 GGAGAAAACGAGCAGAATCGC 59.939 52.381 0.00 0.00 46.60 4.58
3023 8894 1.876156 AGCAAAGGAGAAAACGAGCAG 59.124 47.619 0.00 0.00 0.00 4.24
3114 8987 7.772332 AGCCGTACTTATAACTGAAGAAATG 57.228 36.000 0.00 0.00 0.00 2.32
3128 9001 5.334569 GCAAAGTGAATTGAAGCCGTACTTA 60.335 40.000 0.00 0.00 39.29 2.24
3129 9002 4.556699 GCAAAGTGAATTGAAGCCGTACTT 60.557 41.667 0.00 0.00 42.98 2.24
3135 9008 7.425577 AAAATAAGCAAAGTGAATTGAAGCC 57.574 32.000 0.00 0.00 31.84 4.35
3196 9072 7.633193 TTGTACCTGTAAACATTGTTTCAGT 57.367 32.000 24.19 17.67 0.00 3.41
3282 9158 2.544694 CGAGGCTCACAATCTAGCGAAT 60.545 50.000 15.95 0.00 39.71 3.34
3484 9361 1.142748 CTAGCTGTTCGGGAGGCTG 59.857 63.158 0.00 0.00 36.40 4.85
3545 9422 2.843912 CTTTCCTTGGGGCATCGGCT 62.844 60.000 0.00 0.00 40.87 5.52
3613 9490 1.812922 GATGGCGCAGTCTCACAGG 60.813 63.158 10.83 0.00 0.00 4.00
3683 9560 2.683933 CAGGGAGTACCACGGCCT 60.684 66.667 0.00 0.00 43.89 5.19
3722 9599 5.466728 TGACCTTCTTTCAATTGACGAGAAG 59.533 40.000 31.28 31.28 40.56 2.85
3763 9640 3.940852 TCCTCAATCCACACATCATTTCG 59.059 43.478 0.00 0.00 0.00 3.46
3767 9644 3.779183 AGAGTCCTCAATCCACACATCAT 59.221 43.478 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.