Multiple sequence alignment - TraesCS2D01G471100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G471100 chr2D 100.000 3559 0 0 1 3559 575270917 575267359 0.000000e+00 6573.0
1 TraesCS2D01G471100 chr2D 96.801 2876 53 8 685 3559 263424008 263421171 0.000000e+00 4765.0
2 TraesCS2D01G471100 chr2D 98.214 1344 18 5 2219 3559 118381872 118380532 0.000000e+00 2344.0
3 TraesCS2D01G471100 chr2D 96.333 1418 31 1 766 2162 118383285 118381868 0.000000e+00 2311.0
4 TraesCS2D01G471100 chr4D 97.997 2796 51 4 766 3559 264461336 264464128 0.000000e+00 4848.0
5 TraesCS2D01G471100 chr4A 95.702 2885 105 14 685 3559 359640454 359637579 0.000000e+00 4623.0
6 TraesCS2D01G471100 chr4A 88.949 552 34 7 684 1210 725532128 725532677 0.000000e+00 656.0
7 TraesCS2D01G471100 chr6A 96.467 2717 68 17 742 3443 526165135 526162432 0.000000e+00 4460.0
8 TraesCS2D01G471100 chr6A 87.361 269 29 4 810 1073 54085943 54086211 1.610000e-78 303.0
9 TraesCS2D01G471100 chr2B 97.309 2527 61 6 1036 3559 706585108 706587630 0.000000e+00 4283.0
10 TraesCS2D01G471100 chr2B 90.312 320 29 1 682 1001 706584820 706585137 5.500000e-113 418.0
11 TraesCS2D01G471100 chr2B 88.673 309 29 2 67 375 359421405 359421707 4.340000e-99 372.0
12 TraesCS2D01G471100 chr2B 89.000 300 27 2 65 364 502725970 502726263 2.020000e-97 366.0
13 TraesCS2D01G471100 chr2B 86.842 304 27 6 65 366 756384934 756384642 9.530000e-86 327.0
14 TraesCS2D01G471100 chr3B 98.231 1865 31 2 1696 3559 739840915 739842778 0.000000e+00 3260.0
15 TraesCS2D01G471100 chr3B 94.792 1056 32 5 1953 2994 758390654 758391700 0.000000e+00 1624.0
16 TraesCS2D01G471100 chr3B 94.876 566 19 7 2994 3559 758392218 758392773 0.000000e+00 876.0
17 TraesCS2D01G471100 chr3B 90.112 627 17 11 765 1391 739839683 739840264 0.000000e+00 773.0
18 TraesCS2D01G471100 chr3B 98.188 276 4 1 1384 1659 739840645 739840919 6.910000e-132 481.0
19 TraesCS2D01G471100 chr3B 89.298 299 26 2 65 363 391007572 391007280 1.560000e-98 370.0
20 TraesCS2D01G471100 chr3B 92.079 202 16 0 1320 1521 758389167 758389368 5.820000e-73 285.0
21 TraesCS2D01G471100 chr3B 87.500 176 12 6 2994 3169 68212897 68213062 1.010000e-45 195.0
22 TraesCS2D01G471100 chr3B 91.176 68 5 1 1 67 514919813 514919880 1.360000e-14 91.6
23 TraesCS2D01G471100 chr4B 90.061 825 37 13 675 1494 626780512 626781296 0.000000e+00 1027.0
24 TraesCS2D01G471100 chr4B 94.987 379 17 2 832 1210 37100688 37101064 8.510000e-166 593.0
25 TraesCS2D01G471100 chr4B 87.574 169 14 7 671 836 37091880 37092044 4.690000e-44 189.0
26 TraesCS2D01G471100 chr6D 92.756 566 27 10 2994 3559 249490104 249490655 0.000000e+00 806.0
27 TraesCS2D01G471100 chr6D 93.701 381 19 5 2617 2994 249489221 249489599 1.850000e-157 566.0
28 TraesCS2D01G471100 chr1D 90.305 557 25 3 2235 2789 209572299 209571770 0.000000e+00 702.0
29 TraesCS2D01G471100 chr1D 95.046 323 16 0 1472 1794 209725239 209724917 3.170000e-140 508.0
30 TraesCS2D01G471100 chr5B 86.151 556 26 4 2235 2789 203340924 203341429 1.440000e-153 553.0
31 TraesCS2D01G471100 chr5B 92.258 310 24 0 1485 1794 203112650 203112959 1.170000e-119 440.0
32 TraesCS2D01G471100 chr5B 89.286 112 10 1 576 685 317598566 317598677 4.790000e-29 139.0
33 TraesCS2D01G471100 chr5B 87.629 97 11 1 582 677 515670698 515670602 1.040000e-20 111.0
34 TraesCS2D01G471100 chr5B 86.316 95 10 3 687 779 439682556 439682463 2.260000e-17 100.0
35 TraesCS2D01G471100 chr7D 91.558 308 25 1 1785 2091 613624395 613624702 1.180000e-114 424.0
36 TraesCS2D01G471100 chr7D 100.000 30 0 0 685 714 410891269 410891298 4.960000e-04 56.5
37 TraesCS2D01G471100 chr7B 92.333 300 17 2 65 364 355703084 355703377 4.250000e-114 422.0
38 TraesCS2D01G471100 chr7B 90.033 301 22 4 65 364 576024720 576025013 2.000000e-102 383.0
39 TraesCS2D01G471100 chr7B 90.000 110 11 0 576 685 348083585 348083476 3.700000e-30 143.0
40 TraesCS2D01G471100 chr3D 91.667 300 19 1 65 364 498022352 498022059 9.200000e-111 411.0
41 TraesCS2D01G471100 chr3D 89.527 296 24 2 65 360 183360478 183360190 5.610000e-98 368.0
42 TraesCS2D01G471100 chrUn 88.851 296 27 3 62 357 59998298 59998587 3.380000e-95 359.0
43 TraesCS2D01G471100 chr7A 88.561 271 24 6 810 1073 680662006 680661736 4.430000e-84 322.0
44 TraesCS2D01G471100 chr1B 88.889 117 12 1 570 685 268981052 268980936 3.700000e-30 143.0
45 TraesCS2D01G471100 chr5D 90.196 102 8 2 685 785 114804772 114804872 8.020000e-27 132.0
46 TraesCS2D01G471100 chr6B 76.471 119 21 7 415 529 252176833 252176718 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G471100 chr2D 575267359 575270917 3558 True 6573.000000 6573 100.000000 1 3559 1 chr2D.!!$R2 3558
1 TraesCS2D01G471100 chr2D 263421171 263424008 2837 True 4765.000000 4765 96.801000 685 3559 1 chr2D.!!$R1 2874
2 TraesCS2D01G471100 chr2D 118380532 118383285 2753 True 2327.500000 2344 97.273500 766 3559 2 chr2D.!!$R3 2793
3 TraesCS2D01G471100 chr4D 264461336 264464128 2792 False 4848.000000 4848 97.997000 766 3559 1 chr4D.!!$F1 2793
4 TraesCS2D01G471100 chr4A 359637579 359640454 2875 True 4623.000000 4623 95.702000 685 3559 1 chr4A.!!$R1 2874
5 TraesCS2D01G471100 chr4A 725532128 725532677 549 False 656.000000 656 88.949000 684 1210 1 chr4A.!!$F1 526
6 TraesCS2D01G471100 chr6A 526162432 526165135 2703 True 4460.000000 4460 96.467000 742 3443 1 chr6A.!!$R1 2701
7 TraesCS2D01G471100 chr2B 706584820 706587630 2810 False 2350.500000 4283 93.810500 682 3559 2 chr2B.!!$F3 2877
8 TraesCS2D01G471100 chr3B 739839683 739842778 3095 False 1504.666667 3260 95.510333 765 3559 3 chr3B.!!$F3 2794
9 TraesCS2D01G471100 chr3B 758389167 758392773 3606 False 928.333333 1624 93.915667 1320 3559 3 chr3B.!!$F4 2239
10 TraesCS2D01G471100 chr4B 626780512 626781296 784 False 1027.000000 1027 90.061000 675 1494 1 chr4B.!!$F3 819
11 TraesCS2D01G471100 chr6D 249489221 249490655 1434 False 686.000000 806 93.228500 2617 3559 2 chr6D.!!$F1 942
12 TraesCS2D01G471100 chr1D 209571770 209572299 529 True 702.000000 702 90.305000 2235 2789 1 chr1D.!!$R1 554
13 TraesCS2D01G471100 chr5B 203340924 203341429 505 False 553.000000 553 86.151000 2235 2789 1 chr5B.!!$F2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.029567 GTACTGCGTCATCTCCTCGG 59.970 60.0 0.00 0.0 0.0 4.63 F
377 378 0.034198 TCGCCGTTGGTCAGATTTGA 59.966 50.0 0.00 0.0 0.0 2.69 F
424 425 0.039437 CGGACGCGAATATAGGCAGT 60.039 55.0 15.93 0.0 0.0 4.40 F
1358 1518 0.109153 TGTAGTAGAGCCCGCCGATA 59.891 55.0 0.00 0.0 0.0 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2233 3636 0.393808 TTGACAATTAGCTCCGCCCC 60.394 55.0 0.00 0.0 0.00 5.80 R
2388 3792 0.322816 GGAGGGATGAAGCAACTGCA 60.323 55.0 4.22 0.0 45.16 4.41 R
2542 3947 5.994250 TCTAGGCTCAAGCACTAATCAATT 58.006 37.5 4.13 0.0 44.36 2.32 R
2763 4183 1.055040 AGAACAGCAAGAGGTCAGCT 58.945 50.0 0.00 0.0 39.63 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.180769 CGACCTGATTCGTGCCGA 59.819 61.111 0.00 0.00 34.16 5.54
26 27 1.281353 TTCGTGCCGAACATGTTGC 59.719 52.632 17.58 14.69 41.05 4.17
27 28 1.440145 TTCGTGCCGAACATGTTGCA 61.440 50.000 17.58 17.28 41.05 4.08
28 29 1.009108 CGTGCCGAACATGTTGCAA 60.009 52.632 21.23 0.00 35.16 4.08
29 30 0.593518 CGTGCCGAACATGTTGCAAA 60.594 50.000 21.23 1.79 35.16 3.68
30 31 1.130955 GTGCCGAACATGTTGCAAAG 58.869 50.000 21.23 5.59 35.16 2.77
31 32 0.597118 TGCCGAACATGTTGCAAAGC 60.597 50.000 17.58 11.29 0.00 3.51
32 33 1.284297 GCCGAACATGTTGCAAAGCC 61.284 55.000 17.58 0.00 0.00 4.35
33 34 0.031857 CCGAACATGTTGCAAAGCCA 59.968 50.000 17.58 0.00 0.00 4.75
34 35 1.411394 CGAACATGTTGCAAAGCCAG 58.589 50.000 17.58 0.00 0.00 4.85
35 36 1.269206 CGAACATGTTGCAAAGCCAGT 60.269 47.619 17.58 0.00 0.00 4.00
36 37 2.397549 GAACATGTTGCAAAGCCAGTC 58.602 47.619 17.58 0.00 0.00 3.51
37 38 0.675633 ACATGTTGCAAAGCCAGTCC 59.324 50.000 0.00 0.00 0.00 3.85
38 39 0.963962 CATGTTGCAAAGCCAGTCCT 59.036 50.000 0.00 0.00 0.00 3.85
39 40 1.068055 CATGTTGCAAAGCCAGTCCTC 60.068 52.381 0.00 0.00 0.00 3.71
40 41 0.106769 TGTTGCAAAGCCAGTCCTCA 60.107 50.000 0.00 0.00 0.00 3.86
41 42 1.032014 GTTGCAAAGCCAGTCCTCAA 58.968 50.000 0.00 0.00 0.00 3.02
42 43 1.615392 GTTGCAAAGCCAGTCCTCAAT 59.385 47.619 0.00 0.00 0.00 2.57
43 44 2.819608 GTTGCAAAGCCAGTCCTCAATA 59.180 45.455 0.00 0.00 0.00 1.90
44 45 3.370840 TGCAAAGCCAGTCCTCAATAT 57.629 42.857 0.00 0.00 0.00 1.28
45 46 3.018856 TGCAAAGCCAGTCCTCAATATG 58.981 45.455 0.00 0.00 0.00 1.78
46 47 2.223665 GCAAAGCCAGTCCTCAATATGC 60.224 50.000 0.00 0.00 0.00 3.14
47 48 3.285484 CAAAGCCAGTCCTCAATATGCT 58.715 45.455 0.00 0.00 0.00 3.79
48 49 3.659183 AAGCCAGTCCTCAATATGCTT 57.341 42.857 0.00 0.00 33.10 3.91
49 50 4.778213 AAGCCAGTCCTCAATATGCTTA 57.222 40.909 0.00 0.00 35.95 3.09
50 51 4.348863 AGCCAGTCCTCAATATGCTTAG 57.651 45.455 0.00 0.00 0.00 2.18
51 52 3.713764 AGCCAGTCCTCAATATGCTTAGT 59.286 43.478 0.00 0.00 0.00 2.24
52 53 4.901849 AGCCAGTCCTCAATATGCTTAGTA 59.098 41.667 0.00 0.00 0.00 1.82
53 54 5.011533 AGCCAGTCCTCAATATGCTTAGTAG 59.988 44.000 0.00 0.00 0.00 2.57
70 71 8.215899 GCTTAGTAGCACTTTTATTTGTTGTG 57.784 34.615 0.00 0.00 46.95 3.33
71 72 7.860872 GCTTAGTAGCACTTTTATTTGTTGTGT 59.139 33.333 0.00 0.00 46.95 3.72
72 73 9.169468 CTTAGTAGCACTTTTATTTGTTGTGTG 57.831 33.333 0.00 0.00 0.00 3.82
73 74 5.977129 AGTAGCACTTTTATTTGTTGTGTGC 59.023 36.000 0.00 0.00 46.38 4.57
75 76 5.717038 GCACTTTTATTTGTTGTGTGCTT 57.283 34.783 0.00 0.00 43.79 3.91
76 77 5.491973 GCACTTTTATTTGTTGTGTGCTTG 58.508 37.500 0.00 0.00 43.79 4.01
77 78 5.290643 GCACTTTTATTTGTTGTGTGCTTGA 59.709 36.000 0.00 0.00 43.79 3.02
78 79 6.508404 GCACTTTTATTTGTTGTGTGCTTGAG 60.508 38.462 0.00 0.00 43.79 3.02
79 80 6.019640 CACTTTTATTTGTTGTGTGCTTGAGG 60.020 38.462 0.00 0.00 0.00 3.86
80 81 5.590530 TTTATTTGTTGTGTGCTTGAGGT 57.409 34.783 0.00 0.00 0.00 3.85
81 82 3.715628 ATTTGTTGTGTGCTTGAGGTC 57.284 42.857 0.00 0.00 0.00 3.85
82 83 2.121291 TTGTTGTGTGCTTGAGGTCA 57.879 45.000 0.00 0.00 0.00 4.02
83 84 2.346766 TGTTGTGTGCTTGAGGTCAT 57.653 45.000 0.00 0.00 0.00 3.06
84 85 2.653726 TGTTGTGTGCTTGAGGTCATT 58.346 42.857 0.00 0.00 0.00 2.57
85 86 3.814625 TGTTGTGTGCTTGAGGTCATTA 58.185 40.909 0.00 0.00 0.00 1.90
86 87 3.563808 TGTTGTGTGCTTGAGGTCATTAC 59.436 43.478 0.00 0.00 0.00 1.89
97 98 2.981859 GGTCATTACCTCCACGTCAT 57.018 50.000 0.00 0.00 43.08 3.06
98 99 3.261981 GGTCATTACCTCCACGTCATT 57.738 47.619 0.00 0.00 43.08 2.57
99 100 2.936498 GGTCATTACCTCCACGTCATTG 59.064 50.000 0.00 0.00 43.08 2.82
100 101 2.351726 GTCATTACCTCCACGTCATTGC 59.648 50.000 0.00 0.00 0.00 3.56
101 102 2.236146 TCATTACCTCCACGTCATTGCT 59.764 45.455 0.00 0.00 0.00 3.91
102 103 3.449377 TCATTACCTCCACGTCATTGCTA 59.551 43.478 0.00 0.00 0.00 3.49
103 104 4.100963 TCATTACCTCCACGTCATTGCTAT 59.899 41.667 0.00 0.00 0.00 2.97
104 105 2.315925 ACCTCCACGTCATTGCTATG 57.684 50.000 1.30 1.30 0.00 2.23
105 106 1.134401 ACCTCCACGTCATTGCTATGG 60.134 52.381 8.30 0.00 32.40 2.74
106 107 0.940126 CTCCACGTCATTGCTATGGC 59.060 55.000 8.30 5.45 39.26 4.40
126 127 5.844301 GGCAATACCAAGAAAAACATGTG 57.156 39.130 0.00 0.00 38.86 3.21
127 128 5.296748 GGCAATACCAAGAAAAACATGTGT 58.703 37.500 0.00 0.00 38.86 3.72
128 129 6.451393 GGCAATACCAAGAAAAACATGTGTA 58.549 36.000 0.00 0.00 38.86 2.90
129 130 6.586082 GGCAATACCAAGAAAAACATGTGTAG 59.414 38.462 0.00 0.00 38.86 2.74
130 131 6.089417 GCAATACCAAGAAAAACATGTGTAGC 59.911 38.462 0.00 0.00 0.00 3.58
131 132 7.370383 CAATACCAAGAAAAACATGTGTAGCT 58.630 34.615 0.00 0.00 0.00 3.32
132 133 5.438761 ACCAAGAAAAACATGTGTAGCTC 57.561 39.130 0.00 0.00 0.00 4.09
133 134 4.278419 ACCAAGAAAAACATGTGTAGCTCC 59.722 41.667 0.00 0.00 0.00 4.70
134 135 4.520492 CCAAGAAAAACATGTGTAGCTCCT 59.480 41.667 0.00 0.00 0.00 3.69
135 136 5.705441 CCAAGAAAAACATGTGTAGCTCCTA 59.295 40.000 0.00 0.00 0.00 2.94
136 137 6.375455 CCAAGAAAAACATGTGTAGCTCCTAT 59.625 38.462 0.00 0.00 0.00 2.57
137 138 7.094205 CCAAGAAAAACATGTGTAGCTCCTATT 60.094 37.037 0.00 0.00 0.00 1.73
138 139 8.946085 CAAGAAAAACATGTGTAGCTCCTATTA 58.054 33.333 0.00 0.00 0.00 0.98
139 140 8.494016 AGAAAAACATGTGTAGCTCCTATTAC 57.506 34.615 0.00 0.00 0.00 1.89
140 141 6.903883 AAAACATGTGTAGCTCCTATTACG 57.096 37.500 0.00 0.00 0.00 3.18
141 142 5.593679 AACATGTGTAGCTCCTATTACGT 57.406 39.130 0.00 0.00 0.00 3.57
142 143 4.933330 ACATGTGTAGCTCCTATTACGTG 58.067 43.478 0.00 0.00 33.39 4.49
143 144 4.202121 ACATGTGTAGCTCCTATTACGTGG 60.202 45.833 0.00 0.00 32.45 4.94
144 145 3.623703 TGTGTAGCTCCTATTACGTGGA 58.376 45.455 0.00 0.00 0.00 4.02
145 146 3.379372 TGTGTAGCTCCTATTACGTGGAC 59.621 47.826 0.00 0.00 0.00 4.02
146 147 3.379372 GTGTAGCTCCTATTACGTGGACA 59.621 47.826 0.00 0.00 0.00 4.02
147 148 3.379372 TGTAGCTCCTATTACGTGGACAC 59.621 47.826 0.00 0.00 0.00 3.67
148 149 2.453521 AGCTCCTATTACGTGGACACA 58.546 47.619 0.00 0.00 0.00 3.72
149 150 2.829720 AGCTCCTATTACGTGGACACAA 59.170 45.455 0.00 0.00 0.00 3.33
150 151 3.119101 AGCTCCTATTACGTGGACACAAG 60.119 47.826 0.00 0.00 0.00 3.16
151 152 3.187700 CTCCTATTACGTGGACACAAGC 58.812 50.000 0.00 0.00 0.00 4.01
152 153 2.563620 TCCTATTACGTGGACACAAGCA 59.436 45.455 0.00 0.00 0.00 3.91
153 154 2.930040 CCTATTACGTGGACACAAGCAG 59.070 50.000 0.00 0.00 0.00 4.24
154 155 2.543777 ATTACGTGGACACAAGCAGT 57.456 45.000 0.00 0.00 0.00 4.40
155 156 1.860676 TTACGTGGACACAAGCAGTC 58.139 50.000 0.00 0.00 35.29 3.51
166 167 6.210287 GACACAAGCAGTCCTAGTAATACT 57.790 41.667 0.00 0.00 0.00 2.12
167 168 7.330900 GACACAAGCAGTCCTAGTAATACTA 57.669 40.000 0.00 0.00 0.00 1.82
168 169 7.336161 ACACAAGCAGTCCTAGTAATACTAG 57.664 40.000 18.09 18.09 45.93 2.57
179 180 6.309712 CTAGTAATACTAGGCGTACTTGCA 57.690 41.667 17.44 0.00 43.37 4.08
180 181 4.929781 AGTAATACTAGGCGTACTTGCAC 58.070 43.478 0.00 0.00 36.28 4.57
181 182 4.643784 AGTAATACTAGGCGTACTTGCACT 59.356 41.667 0.00 0.00 36.28 4.40
182 183 4.467198 AATACTAGGCGTACTTGCACTT 57.533 40.909 0.00 0.00 36.28 3.16
183 184 2.080286 ACTAGGCGTACTTGCACTTG 57.920 50.000 0.00 0.00 36.28 3.16
184 185 0.721718 CTAGGCGTACTTGCACTTGC 59.278 55.000 0.00 0.00 42.50 4.01
194 195 2.331451 GCACTTGCACGTGGGAAC 59.669 61.111 23.09 4.38 41.59 3.62
195 196 2.186826 GCACTTGCACGTGGGAACT 61.187 57.895 23.09 0.00 41.59 3.01
196 197 1.648720 CACTTGCACGTGGGAACTG 59.351 57.895 18.88 1.77 0.00 3.16
197 198 2.186826 ACTTGCACGTGGGAACTGC 61.187 57.895 18.88 0.65 0.00 4.40
198 199 2.124529 TTGCACGTGGGAACTGCA 60.125 55.556 18.88 3.81 39.15 4.41
199 200 1.518056 CTTGCACGTGGGAACTGCAT 61.518 55.000 18.88 0.00 40.52 3.96
200 201 0.250510 TTGCACGTGGGAACTGCATA 60.251 50.000 18.88 0.00 40.52 3.14
201 202 0.250510 TGCACGTGGGAACTGCATAA 60.251 50.000 18.88 0.00 36.00 1.90
202 203 0.878416 GCACGTGGGAACTGCATAAA 59.122 50.000 18.88 0.00 0.00 1.40
203 204 1.268352 GCACGTGGGAACTGCATAAAA 59.732 47.619 18.88 0.00 0.00 1.52
204 205 2.668279 GCACGTGGGAACTGCATAAAAG 60.668 50.000 18.88 0.00 0.00 2.27
205 206 2.095263 CACGTGGGAACTGCATAAAAGG 60.095 50.000 7.95 0.00 0.00 3.11
206 207 2.224670 ACGTGGGAACTGCATAAAAGGA 60.225 45.455 0.00 0.00 0.00 3.36
207 208 2.817258 CGTGGGAACTGCATAAAAGGAA 59.183 45.455 0.00 0.00 0.00 3.36
208 209 3.119849 CGTGGGAACTGCATAAAAGGAAG 60.120 47.826 0.00 0.00 0.00 3.46
209 210 4.079253 GTGGGAACTGCATAAAAGGAAGA 58.921 43.478 0.00 0.00 0.00 2.87
210 211 4.706962 GTGGGAACTGCATAAAAGGAAGAT 59.293 41.667 0.00 0.00 0.00 2.40
211 212 4.706476 TGGGAACTGCATAAAAGGAAGATG 59.294 41.667 0.00 0.00 0.00 2.90
212 213 4.949856 GGGAACTGCATAAAAGGAAGATGA 59.050 41.667 0.00 0.00 0.00 2.92
213 214 5.595952 GGGAACTGCATAAAAGGAAGATGAT 59.404 40.000 0.00 0.00 0.00 2.45
214 215 6.097412 GGGAACTGCATAAAAGGAAGATGATT 59.903 38.462 0.00 0.00 0.00 2.57
215 216 7.285401 GGGAACTGCATAAAAGGAAGATGATTA 59.715 37.037 0.00 0.00 0.00 1.75
216 217 8.348507 GGAACTGCATAAAAGGAAGATGATTAG 58.651 37.037 0.00 0.00 0.00 1.73
217 218 7.269477 ACTGCATAAAAGGAAGATGATTAGC 57.731 36.000 0.00 0.00 0.00 3.09
218 219 6.017605 ACTGCATAAAAGGAAGATGATTAGCG 60.018 38.462 0.00 0.00 0.00 4.26
219 220 6.054941 TGCATAAAAGGAAGATGATTAGCGA 58.945 36.000 0.00 0.00 0.00 4.93
220 221 6.542005 TGCATAAAAGGAAGATGATTAGCGAA 59.458 34.615 0.00 0.00 0.00 4.70
221 222 7.066887 TGCATAAAAGGAAGATGATTAGCGAAA 59.933 33.333 0.00 0.00 0.00 3.46
222 223 7.915397 GCATAAAAGGAAGATGATTAGCGAAAA 59.085 33.333 0.00 0.00 0.00 2.29
223 224 9.443283 CATAAAAGGAAGATGATTAGCGAAAAG 57.557 33.333 0.00 0.00 0.00 2.27
272 273 6.486253 TGAAGGAAAGAGAAACAATGATCG 57.514 37.500 0.00 0.00 0.00 3.69
273 274 5.412594 TGAAGGAAAGAGAAACAATGATCGG 59.587 40.000 0.00 0.00 0.00 4.18
274 275 5.165961 AGGAAAGAGAAACAATGATCGGA 57.834 39.130 0.00 0.00 0.00 4.55
275 276 5.749462 AGGAAAGAGAAACAATGATCGGAT 58.251 37.500 0.00 0.00 0.00 4.18
276 277 5.819901 AGGAAAGAGAAACAATGATCGGATC 59.180 40.000 11.07 11.07 0.00 3.36
277 278 5.819901 GGAAAGAGAAACAATGATCGGATCT 59.180 40.000 18.16 2.33 0.00 2.75
278 279 6.317391 GGAAAGAGAAACAATGATCGGATCTT 59.683 38.462 18.16 9.79 0.00 2.40
279 280 6.917217 AAGAGAAACAATGATCGGATCTTC 57.083 37.500 18.16 12.65 0.00 2.87
280 281 5.363939 AGAGAAACAATGATCGGATCTTCC 58.636 41.667 18.16 7.91 0.00 3.46
281 282 5.130145 AGAGAAACAATGATCGGATCTTCCT 59.870 40.000 18.16 9.59 33.30 3.36
282 283 5.121811 AGAAACAATGATCGGATCTTCCTG 58.878 41.667 18.16 10.69 33.30 3.86
283 284 4.494091 AACAATGATCGGATCTTCCTGT 57.506 40.909 18.16 11.24 33.30 4.00
284 285 5.614324 AACAATGATCGGATCTTCCTGTA 57.386 39.130 18.16 0.00 33.30 2.74
285 286 5.614324 ACAATGATCGGATCTTCCTGTAA 57.386 39.130 18.16 0.00 33.30 2.41
286 287 5.360591 ACAATGATCGGATCTTCCTGTAAC 58.639 41.667 18.16 0.00 33.30 2.50
287 288 5.129485 ACAATGATCGGATCTTCCTGTAACT 59.871 40.000 18.16 0.00 33.30 2.24
288 289 4.655762 TGATCGGATCTTCCTGTAACTG 57.344 45.455 18.16 0.00 33.30 3.16
289 290 2.961526 TCGGATCTTCCTGTAACTGC 57.038 50.000 0.00 0.00 33.30 4.40
290 291 1.134367 TCGGATCTTCCTGTAACTGCG 59.866 52.381 0.00 0.00 33.30 5.18
291 292 1.291132 GGATCTTCCTGTAACTGCGC 58.709 55.000 0.00 0.00 32.53 6.09
292 293 1.134670 GGATCTTCCTGTAACTGCGCT 60.135 52.381 9.73 0.00 32.53 5.92
293 294 1.929836 GATCTTCCTGTAACTGCGCTG 59.070 52.381 13.23 13.23 0.00 5.18
294 295 0.966179 TCTTCCTGTAACTGCGCTGA 59.034 50.000 21.92 0.00 0.00 4.26
295 296 1.067565 TCTTCCTGTAACTGCGCTGAG 60.068 52.381 21.92 7.31 0.00 3.35
305 306 4.110493 GCGCTGAGCCGAACTATT 57.890 55.556 0.00 0.00 40.81 1.73
306 307 1.638467 GCGCTGAGCCGAACTATTG 59.362 57.895 0.00 0.00 40.81 1.90
307 308 1.084370 GCGCTGAGCCGAACTATTGT 61.084 55.000 0.00 0.00 40.81 2.71
308 309 0.924090 CGCTGAGCCGAACTATTGTC 59.076 55.000 0.00 0.00 0.00 3.18
309 310 0.924090 GCTGAGCCGAACTATTGTCG 59.076 55.000 0.00 0.00 0.00 4.35
315 316 1.934589 CCGAACTATTGTCGGCATCA 58.065 50.000 0.00 0.00 40.25 3.07
316 317 1.860950 CCGAACTATTGTCGGCATCAG 59.139 52.381 0.00 0.00 40.25 2.90
317 318 2.481276 CCGAACTATTGTCGGCATCAGA 60.481 50.000 5.48 0.00 40.25 3.27
318 319 3.384668 CGAACTATTGTCGGCATCAGAT 58.615 45.455 5.48 0.00 0.00 2.90
319 320 3.804325 CGAACTATTGTCGGCATCAGATT 59.196 43.478 5.48 0.00 0.00 2.40
320 321 4.084849 CGAACTATTGTCGGCATCAGATTC 60.085 45.833 5.48 5.10 0.00 2.52
321 322 4.406648 ACTATTGTCGGCATCAGATTCA 57.593 40.909 5.48 0.00 0.00 2.57
322 323 4.965814 ACTATTGTCGGCATCAGATTCAT 58.034 39.130 5.48 0.00 0.00 2.57
323 324 4.753610 ACTATTGTCGGCATCAGATTCATG 59.246 41.667 5.48 0.00 0.00 3.07
324 325 2.696989 TGTCGGCATCAGATTCATGT 57.303 45.000 0.00 0.00 0.00 3.21
325 326 2.989909 TGTCGGCATCAGATTCATGTT 58.010 42.857 0.00 0.00 0.00 2.71
326 327 2.679336 TGTCGGCATCAGATTCATGTTG 59.321 45.455 0.00 0.00 0.00 3.33
327 328 2.679837 GTCGGCATCAGATTCATGTTGT 59.320 45.455 0.00 0.00 0.00 3.32
328 329 2.679336 TCGGCATCAGATTCATGTTGTG 59.321 45.455 0.00 0.00 0.00 3.33
329 330 2.421073 CGGCATCAGATTCATGTTGTGT 59.579 45.455 0.00 0.00 0.00 3.72
330 331 3.622612 CGGCATCAGATTCATGTTGTGTA 59.377 43.478 0.00 0.00 0.00 2.90
331 332 4.494690 CGGCATCAGATTCATGTTGTGTAC 60.495 45.833 0.00 0.00 0.00 2.90
332 333 4.637534 GGCATCAGATTCATGTTGTGTACT 59.362 41.667 0.00 0.00 0.00 2.73
333 334 5.448225 GGCATCAGATTCATGTTGTGTACTG 60.448 44.000 0.00 0.00 0.00 2.74
334 335 5.122869 GCATCAGATTCATGTTGTGTACTGT 59.877 40.000 0.00 0.00 0.00 3.55
335 336 6.313658 GCATCAGATTCATGTTGTGTACTGTA 59.686 38.462 0.00 0.00 0.00 2.74
336 337 7.674937 GCATCAGATTCATGTTGTGTACTGTAC 60.675 40.741 10.98 10.98 0.00 2.90
337 338 6.993079 TCAGATTCATGTTGTGTACTGTACT 58.007 36.000 17.98 0.00 0.00 2.73
338 339 6.868339 TCAGATTCATGTTGTGTACTGTACTG 59.132 38.462 17.98 7.71 0.00 2.74
339 340 5.639506 AGATTCATGTTGTGTACTGTACTGC 59.360 40.000 17.98 11.54 0.00 4.40
340 341 3.313690 TCATGTTGTGTACTGTACTGCG 58.686 45.455 17.98 1.80 0.00 5.18
341 342 2.875087 TGTTGTGTACTGTACTGCGT 57.125 45.000 17.98 0.00 0.00 5.24
342 343 2.734670 TGTTGTGTACTGTACTGCGTC 58.265 47.619 17.98 8.93 0.00 5.19
343 344 2.099427 TGTTGTGTACTGTACTGCGTCA 59.901 45.455 17.98 10.82 0.00 4.35
344 345 3.243602 TGTTGTGTACTGTACTGCGTCAT 60.244 43.478 17.98 0.00 0.00 3.06
345 346 3.211803 TGTGTACTGTACTGCGTCATC 57.788 47.619 17.98 1.47 0.00 2.92
346 347 2.817844 TGTGTACTGTACTGCGTCATCT 59.182 45.455 17.98 0.00 0.00 2.90
347 348 3.119955 TGTGTACTGTACTGCGTCATCTC 60.120 47.826 17.98 0.00 0.00 2.75
348 349 2.422479 TGTACTGTACTGCGTCATCTCC 59.578 50.000 17.98 0.00 0.00 3.71
349 350 1.840737 ACTGTACTGCGTCATCTCCT 58.159 50.000 0.00 0.00 0.00 3.69
350 351 1.746220 ACTGTACTGCGTCATCTCCTC 59.254 52.381 0.00 0.00 0.00 3.71
351 352 0.733150 TGTACTGCGTCATCTCCTCG 59.267 55.000 0.00 0.00 0.00 4.63
352 353 0.029567 GTACTGCGTCATCTCCTCGG 59.970 60.000 0.00 0.00 0.00 4.63
353 354 1.725557 TACTGCGTCATCTCCTCGGC 61.726 60.000 0.00 0.00 0.00 5.54
354 355 2.755876 TGCGTCATCTCCTCGGCT 60.756 61.111 0.00 0.00 0.00 5.52
355 356 2.279120 GCGTCATCTCCTCGGCTG 60.279 66.667 0.00 0.00 0.00 4.85
356 357 2.415010 CGTCATCTCCTCGGCTGG 59.585 66.667 0.00 0.00 0.00 4.85
357 358 2.121538 CGTCATCTCCTCGGCTGGA 61.122 63.158 0.00 0.00 34.52 3.86
358 359 1.459455 CGTCATCTCCTCGGCTGGAT 61.459 60.000 0.00 0.00 35.30 3.41
359 360 0.316841 GTCATCTCCTCGGCTGGATC 59.683 60.000 0.00 0.00 35.30 3.36
360 361 1.175347 TCATCTCCTCGGCTGGATCG 61.175 60.000 0.00 0.00 35.30 3.69
361 362 2.569354 ATCTCCTCGGCTGGATCGC 61.569 63.158 0.00 0.00 35.30 4.58
362 363 4.292178 CTCCTCGGCTGGATCGCC 62.292 72.222 1.72 1.72 46.68 5.54
368 369 4.778143 GGCTGGATCGCCGTTGGT 62.778 66.667 0.00 0.00 40.79 3.67
369 370 3.195698 GCTGGATCGCCGTTGGTC 61.196 66.667 0.00 0.00 36.79 4.02
370 371 2.264480 CTGGATCGCCGTTGGTCA 59.736 61.111 0.00 0.00 36.79 4.02
371 372 1.811266 CTGGATCGCCGTTGGTCAG 60.811 63.158 0.00 0.00 36.79 3.51
372 373 2.225791 CTGGATCGCCGTTGGTCAGA 62.226 60.000 0.00 0.00 36.79 3.27
373 374 1.144057 GGATCGCCGTTGGTCAGAT 59.856 57.895 0.00 0.00 0.00 2.90
374 375 0.462047 GGATCGCCGTTGGTCAGATT 60.462 55.000 0.00 0.00 0.00 2.40
375 376 1.369625 GATCGCCGTTGGTCAGATTT 58.630 50.000 0.00 0.00 0.00 2.17
376 377 1.062587 GATCGCCGTTGGTCAGATTTG 59.937 52.381 0.00 0.00 0.00 2.32
377 378 0.034198 TCGCCGTTGGTCAGATTTGA 59.966 50.000 0.00 0.00 0.00 2.69
378 379 0.443869 CGCCGTTGGTCAGATTTGAG 59.556 55.000 0.00 0.00 32.98 3.02
379 380 1.523758 GCCGTTGGTCAGATTTGAGT 58.476 50.000 0.00 0.00 32.98 3.41
380 381 1.464997 GCCGTTGGTCAGATTTGAGTC 59.535 52.381 0.00 0.00 32.98 3.36
381 382 2.076863 CCGTTGGTCAGATTTGAGTCC 58.923 52.381 0.00 0.00 32.98 3.85
382 383 1.726791 CGTTGGTCAGATTTGAGTCCG 59.273 52.381 0.00 0.00 32.98 4.79
383 384 2.076863 GTTGGTCAGATTTGAGTCCGG 58.923 52.381 0.00 0.00 32.98 5.14
384 385 1.639722 TGGTCAGATTTGAGTCCGGA 58.360 50.000 0.00 0.00 32.98 5.14
385 386 2.187958 TGGTCAGATTTGAGTCCGGAT 58.812 47.619 7.81 0.00 32.98 4.18
386 387 2.168521 TGGTCAGATTTGAGTCCGGATC 59.831 50.000 7.81 7.20 32.98 3.36
387 388 2.483889 GGTCAGATTTGAGTCCGGATCC 60.484 54.545 7.81 0.00 32.98 3.36
388 389 1.409064 TCAGATTTGAGTCCGGATCCG 59.591 52.381 27.65 27.65 39.44 4.18
389 390 1.409064 CAGATTTGAGTCCGGATCCGA 59.591 52.381 35.42 18.23 42.83 4.55
390 391 2.036475 CAGATTTGAGTCCGGATCCGAT 59.964 50.000 35.42 20.12 42.83 4.18
391 392 2.036475 AGATTTGAGTCCGGATCCGATG 59.964 50.000 35.42 19.52 42.83 3.84
392 393 1.191535 TTTGAGTCCGGATCCGATGT 58.808 50.000 35.42 18.20 42.83 3.06
393 394 2.061509 TTGAGTCCGGATCCGATGTA 57.938 50.000 35.42 14.52 42.83 2.29
394 395 2.287977 TGAGTCCGGATCCGATGTAT 57.712 50.000 35.42 15.66 42.83 2.29
395 396 2.160205 TGAGTCCGGATCCGATGTATC 58.840 52.381 35.42 22.68 42.83 2.24
396 397 2.160205 GAGTCCGGATCCGATGTATCA 58.840 52.381 35.42 6.83 42.83 2.15
397 398 1.887198 AGTCCGGATCCGATGTATCAC 59.113 52.381 35.42 17.48 42.83 3.06
398 399 1.067776 GTCCGGATCCGATGTATCACC 60.068 57.143 35.42 7.79 42.83 4.02
399 400 0.109272 CCGGATCCGATGTATCACCG 60.109 60.000 35.42 10.51 42.83 4.94
400 401 0.879090 CGGATCCGATGTATCACCGA 59.121 55.000 30.62 0.00 42.83 4.69
401 402 1.135660 CGGATCCGATGTATCACCGAG 60.136 57.143 30.62 0.00 42.83 4.63
402 403 1.402984 GGATCCGATGTATCACCGAGC 60.403 57.143 0.00 0.00 0.00 5.03
403 404 1.269723 GATCCGATGTATCACCGAGCA 59.730 52.381 0.00 0.00 0.00 4.26
404 405 0.668535 TCCGATGTATCACCGAGCAG 59.331 55.000 0.00 0.00 0.00 4.24
405 406 0.941463 CCGATGTATCACCGAGCAGC 60.941 60.000 0.00 0.00 0.00 5.25
406 407 1.271446 CGATGTATCACCGAGCAGCG 61.271 60.000 0.00 0.00 40.47 5.18
421 422 3.460144 GCGGACGCGAATATAGGC 58.540 61.111 15.93 1.90 0.00 3.93
422 423 1.372499 GCGGACGCGAATATAGGCA 60.372 57.895 15.93 0.00 0.00 4.75
423 424 1.344942 GCGGACGCGAATATAGGCAG 61.345 60.000 15.93 0.00 0.00 4.85
424 425 0.039437 CGGACGCGAATATAGGCAGT 60.039 55.000 15.93 0.00 0.00 4.40
425 426 1.198408 CGGACGCGAATATAGGCAGTA 59.802 52.381 15.93 0.00 0.00 2.74
426 427 2.593257 GGACGCGAATATAGGCAGTAC 58.407 52.381 15.93 0.00 0.00 2.73
427 428 2.228343 GGACGCGAATATAGGCAGTACT 59.772 50.000 15.93 0.00 0.00 2.73
428 429 3.235195 GACGCGAATATAGGCAGTACTG 58.765 50.000 18.93 18.93 0.00 2.74
446 447 8.871686 CAGTACTGCAATCTATATACACACAA 57.128 34.615 10.54 0.00 0.00 3.33
447 448 8.755941 CAGTACTGCAATCTATATACACACAAC 58.244 37.037 10.54 0.00 0.00 3.32
448 449 8.474831 AGTACTGCAATCTATATACACACAACA 58.525 33.333 0.00 0.00 0.00 3.33
449 450 7.776933 ACTGCAATCTATATACACACAACAG 57.223 36.000 0.00 0.00 0.00 3.16
450 451 6.258727 ACTGCAATCTATATACACACAACAGC 59.741 38.462 0.00 0.00 0.00 4.40
451 452 6.112058 TGCAATCTATATACACACAACAGCA 58.888 36.000 0.00 0.00 0.00 4.41
452 453 6.037062 TGCAATCTATATACACACAACAGCAC 59.963 38.462 0.00 0.00 0.00 4.40
453 454 6.037062 GCAATCTATATACACACAACAGCACA 59.963 38.462 0.00 0.00 0.00 4.57
454 455 7.413988 GCAATCTATATACACACAACAGCACAA 60.414 37.037 0.00 0.00 0.00 3.33
455 456 8.450180 CAATCTATATACACACAACAGCACAAA 58.550 33.333 0.00 0.00 0.00 2.83
456 457 7.359262 TCTATATACACACAACAGCACAAAC 57.641 36.000 0.00 0.00 0.00 2.93
457 458 3.708563 ATACACACAACAGCACAAACC 57.291 42.857 0.00 0.00 0.00 3.27
458 459 0.170116 ACACACAACAGCACAAACCG 59.830 50.000 0.00 0.00 0.00 4.44
459 460 0.449786 CACACAACAGCACAAACCGA 59.550 50.000 0.00 0.00 0.00 4.69
460 461 1.135546 CACACAACAGCACAAACCGAA 60.136 47.619 0.00 0.00 0.00 4.30
461 462 1.135517 ACACAACAGCACAAACCGAAC 60.136 47.619 0.00 0.00 0.00 3.95
462 463 1.135546 CACAACAGCACAAACCGAACA 60.136 47.619 0.00 0.00 0.00 3.18
463 464 1.132262 ACAACAGCACAAACCGAACAG 59.868 47.619 0.00 0.00 0.00 3.16
464 465 1.400142 CAACAGCACAAACCGAACAGA 59.600 47.619 0.00 0.00 0.00 3.41
465 466 1.745232 ACAGCACAAACCGAACAGAA 58.255 45.000 0.00 0.00 0.00 3.02
466 467 2.088423 ACAGCACAAACCGAACAGAAA 58.912 42.857 0.00 0.00 0.00 2.52
467 468 2.490115 ACAGCACAAACCGAACAGAAAA 59.510 40.909 0.00 0.00 0.00 2.29
468 469 3.130340 ACAGCACAAACCGAACAGAAAAT 59.870 39.130 0.00 0.00 0.00 1.82
469 470 4.336993 ACAGCACAAACCGAACAGAAAATA 59.663 37.500 0.00 0.00 0.00 1.40
470 471 5.163602 ACAGCACAAACCGAACAGAAAATAA 60.164 36.000 0.00 0.00 0.00 1.40
471 472 5.920273 CAGCACAAACCGAACAGAAAATAAT 59.080 36.000 0.00 0.00 0.00 1.28
472 473 5.920273 AGCACAAACCGAACAGAAAATAATG 59.080 36.000 0.00 0.00 0.00 1.90
473 474 5.918011 GCACAAACCGAACAGAAAATAATGA 59.082 36.000 0.00 0.00 0.00 2.57
474 475 6.586082 GCACAAACCGAACAGAAAATAATGAT 59.414 34.615 0.00 0.00 0.00 2.45
475 476 7.753132 GCACAAACCGAACAGAAAATAATGATA 59.247 33.333 0.00 0.00 0.00 2.15
476 477 9.061610 CACAAACCGAACAGAAAATAATGATAC 57.938 33.333 0.00 0.00 0.00 2.24
477 478 8.788806 ACAAACCGAACAGAAAATAATGATACA 58.211 29.630 0.00 0.00 0.00 2.29
478 479 9.619316 CAAACCGAACAGAAAATAATGATACAA 57.381 29.630 0.00 0.00 0.00 2.41
523 524 9.853177 AATTATTAGGAAGAATAACACCTCAGG 57.147 33.333 0.00 0.00 34.83 3.86
524 525 8.618240 TTATTAGGAAGAATAACACCTCAGGA 57.382 34.615 0.00 0.00 34.42 3.86
525 526 7.698163 ATTAGGAAGAATAACACCTCAGGAT 57.302 36.000 0.00 0.00 34.42 3.24
526 527 7.510675 TTAGGAAGAATAACACCTCAGGATT 57.489 36.000 0.00 0.00 34.42 3.01
527 528 6.394345 AGGAAGAATAACACCTCAGGATTT 57.606 37.500 0.00 0.00 0.00 2.17
528 529 7.510675 AGGAAGAATAACACCTCAGGATTTA 57.489 36.000 0.00 0.00 0.00 1.40
529 530 8.107196 AGGAAGAATAACACCTCAGGATTTAT 57.893 34.615 0.00 0.00 0.00 1.40
530 531 8.214364 AGGAAGAATAACACCTCAGGATTTATC 58.786 37.037 0.00 0.00 0.00 1.75
542 543 3.071874 GGATTTATCCGATGATGCCCA 57.928 47.619 0.00 0.00 37.19 5.36
543 544 3.012518 GGATTTATCCGATGATGCCCAG 58.987 50.000 0.00 0.00 37.19 4.45
544 545 3.307691 GGATTTATCCGATGATGCCCAGA 60.308 47.826 0.00 0.00 37.19 3.86
545 546 2.839486 TTATCCGATGATGCCCAGAC 57.161 50.000 0.00 0.00 32.18 3.51
546 547 2.015456 TATCCGATGATGCCCAGACT 57.985 50.000 0.00 0.00 32.18 3.24
547 548 0.395686 ATCCGATGATGCCCAGACTG 59.604 55.000 0.00 0.00 0.00 3.51
548 549 0.687427 TCCGATGATGCCCAGACTGA 60.687 55.000 3.32 0.00 0.00 3.41
549 550 0.395686 CCGATGATGCCCAGACTGAT 59.604 55.000 3.32 0.00 0.00 2.90
550 551 1.620323 CCGATGATGCCCAGACTGATA 59.380 52.381 3.32 0.00 0.00 2.15
551 552 2.353505 CCGATGATGCCCAGACTGATAG 60.354 54.545 3.32 0.00 0.00 2.08
552 553 2.697654 GATGATGCCCAGACTGATAGC 58.302 52.381 3.32 4.63 0.00 2.97
553 554 1.499368 TGATGCCCAGACTGATAGCA 58.501 50.000 14.49 14.49 37.94 3.49
555 556 1.690893 GATGCCCAGACTGATAGCAGA 59.309 52.381 16.32 0.00 45.17 4.26
556 557 0.826715 TGCCCAGACTGATAGCAGAC 59.173 55.000 16.32 8.89 45.17 3.51
557 558 0.249238 GCCCAGACTGATAGCAGACG 60.249 60.000 16.32 5.27 45.17 4.18
558 559 1.393603 CCCAGACTGATAGCAGACGA 58.606 55.000 16.32 0.00 45.17 4.20
559 560 1.336440 CCCAGACTGATAGCAGACGAG 59.664 57.143 16.32 6.96 45.17 4.18
560 561 2.293170 CCAGACTGATAGCAGACGAGA 58.707 52.381 16.32 0.00 45.17 4.04
561 562 2.884012 CCAGACTGATAGCAGACGAGAT 59.116 50.000 16.32 0.00 45.17 2.75
562 563 3.304592 CCAGACTGATAGCAGACGAGATG 60.305 52.174 16.32 2.84 45.17 2.90
563 564 3.563390 CAGACTGATAGCAGACGAGATGA 59.437 47.826 16.32 0.00 45.17 2.92
564 565 4.216042 CAGACTGATAGCAGACGAGATGAT 59.784 45.833 16.32 0.00 45.17 2.45
565 566 4.455533 AGACTGATAGCAGACGAGATGATC 59.544 45.833 16.32 0.00 45.17 2.92
566 567 4.140536 ACTGATAGCAGACGAGATGATCA 58.859 43.478 16.32 0.00 45.17 2.92
567 568 4.766373 ACTGATAGCAGACGAGATGATCAT 59.234 41.667 16.32 8.25 45.17 2.45
568 569 5.942826 ACTGATAGCAGACGAGATGATCATA 59.057 40.000 16.32 0.00 45.17 2.15
569 570 6.432472 ACTGATAGCAGACGAGATGATCATAA 59.568 38.462 16.32 0.00 45.17 1.90
570 571 6.616017 TGATAGCAGACGAGATGATCATAAC 58.384 40.000 8.54 4.93 0.00 1.89
571 572 3.894920 AGCAGACGAGATGATCATAACG 58.105 45.455 23.26 23.26 0.00 3.18
572 573 2.983136 GCAGACGAGATGATCATAACGG 59.017 50.000 26.24 15.84 0.00 4.44
573 574 3.551046 GCAGACGAGATGATCATAACGGT 60.551 47.826 26.24 15.80 0.00 4.83
574 575 3.977579 CAGACGAGATGATCATAACGGTG 59.022 47.826 26.24 21.02 0.00 4.94
575 576 3.632604 AGACGAGATGATCATAACGGTGT 59.367 43.478 26.24 13.79 0.00 4.16
576 577 3.966154 ACGAGATGATCATAACGGTGTC 58.034 45.455 26.24 9.05 0.00 3.67
577 578 2.973879 CGAGATGATCATAACGGTGTCG 59.026 50.000 19.59 10.33 43.02 4.35
578 579 3.309388 GAGATGATCATAACGGTGTCGG 58.691 50.000 8.54 0.00 41.39 4.79
579 580 2.956333 AGATGATCATAACGGTGTCGGA 59.044 45.455 8.54 0.00 41.39 4.55
580 581 3.574396 AGATGATCATAACGGTGTCGGAT 59.426 43.478 8.54 0.00 41.39 4.18
581 582 3.364889 TGATCATAACGGTGTCGGATC 57.635 47.619 0.00 0.00 41.39 3.36
582 583 2.287368 TGATCATAACGGTGTCGGATCG 60.287 50.000 0.00 0.00 41.39 3.69
583 584 0.382873 TCATAACGGTGTCGGATCGG 59.617 55.000 0.00 0.00 41.39 4.18
584 585 1.066918 ATAACGGTGTCGGATCGGC 59.933 57.895 0.00 0.00 41.39 5.54
585 586 2.359570 ATAACGGTGTCGGATCGGCC 62.360 60.000 0.00 0.00 41.39 6.13
596 597 3.362581 GATCGGCCGATCTCAACAA 57.637 52.632 45.74 19.43 45.42 2.83
597 598 1.651987 GATCGGCCGATCTCAACAAA 58.348 50.000 45.74 18.68 45.42 2.83
598 599 2.006888 GATCGGCCGATCTCAACAAAA 58.993 47.619 45.74 18.15 45.42 2.44
599 600 1.885560 TCGGCCGATCTCAACAAAAA 58.114 45.000 27.28 0.00 0.00 1.94
620 621 7.817418 AAAAAGGAAGTGCATCAACTAGTAA 57.183 32.000 0.00 0.00 0.00 2.24
621 622 8.409358 AAAAAGGAAGTGCATCAACTAGTAAT 57.591 30.769 0.00 0.00 0.00 1.89
622 623 8.409358 AAAAGGAAGTGCATCAACTAGTAATT 57.591 30.769 0.00 0.00 0.00 1.40
623 624 8.409358 AAAGGAAGTGCATCAACTAGTAATTT 57.591 30.769 0.00 0.00 0.00 1.82
624 625 9.515226 AAAGGAAGTGCATCAACTAGTAATTTA 57.485 29.630 0.00 0.00 0.00 1.40
625 626 8.723942 AGGAAGTGCATCAACTAGTAATTTAG 57.276 34.615 0.00 0.00 0.00 1.85
626 627 7.770897 AGGAAGTGCATCAACTAGTAATTTAGG 59.229 37.037 0.00 0.00 0.00 2.69
627 628 7.553044 GGAAGTGCATCAACTAGTAATTTAGGT 59.447 37.037 0.00 0.00 0.00 3.08
628 629 8.494016 AAGTGCATCAACTAGTAATTTAGGTC 57.506 34.615 0.00 0.00 0.00 3.85
629 630 7.620880 AGTGCATCAACTAGTAATTTAGGTCA 58.379 34.615 0.00 0.00 0.00 4.02
630 631 7.766278 AGTGCATCAACTAGTAATTTAGGTCAG 59.234 37.037 0.00 0.00 0.00 3.51
631 632 7.764443 GTGCATCAACTAGTAATTTAGGTCAGA 59.236 37.037 0.00 0.00 0.00 3.27
632 633 7.764443 TGCATCAACTAGTAATTTAGGTCAGAC 59.236 37.037 0.00 0.00 0.00 3.51
633 634 7.224949 GCATCAACTAGTAATTTAGGTCAGACC 59.775 40.741 12.25 12.25 38.99 3.85
634 635 7.786046 TCAACTAGTAATTTAGGTCAGACCA 57.214 36.000 22.31 5.02 41.95 4.02
635 636 8.197592 TCAACTAGTAATTTAGGTCAGACCAA 57.802 34.615 22.31 8.58 41.95 3.67
636 637 8.653191 TCAACTAGTAATTTAGGTCAGACCAAA 58.347 33.333 22.31 18.21 41.95 3.28
637 638 9.449719 CAACTAGTAATTTAGGTCAGACCAAAT 57.550 33.333 22.31 19.44 41.95 2.32
642 643 8.903820 AGTAATTTAGGTCAGACCAAATAATGC 58.096 33.333 22.31 13.07 41.95 3.56
643 644 7.716799 AATTTAGGTCAGACCAAATAATGCA 57.283 32.000 22.31 0.00 41.95 3.96
644 645 6.509418 TTTAGGTCAGACCAAATAATGCAC 57.491 37.500 22.31 0.00 41.95 4.57
645 646 3.009723 AGGTCAGACCAAATAATGCACG 58.990 45.455 22.31 0.00 41.95 5.34
646 647 2.477863 GGTCAGACCAAATAATGCACGC 60.478 50.000 15.43 0.00 38.42 5.34
647 648 1.742831 TCAGACCAAATAATGCACGCC 59.257 47.619 0.00 0.00 0.00 5.68
648 649 1.472082 CAGACCAAATAATGCACGCCA 59.528 47.619 0.00 0.00 0.00 5.69
649 650 2.099592 CAGACCAAATAATGCACGCCAT 59.900 45.455 0.00 0.00 35.06 4.40
650 651 2.099592 AGACCAAATAATGCACGCCATG 59.900 45.455 0.00 0.00 33.49 3.66
651 652 1.824230 ACCAAATAATGCACGCCATGT 59.176 42.857 0.00 0.00 33.49 3.21
652 653 3.020274 ACCAAATAATGCACGCCATGTA 58.980 40.909 0.00 0.00 33.49 2.29
653 654 3.066621 ACCAAATAATGCACGCCATGTAG 59.933 43.478 0.00 0.00 33.49 2.74
654 655 3.066621 CCAAATAATGCACGCCATGTAGT 59.933 43.478 0.00 0.00 33.49 2.73
655 656 4.282068 CAAATAATGCACGCCATGTAGTC 58.718 43.478 0.00 0.00 33.49 2.59
656 657 2.979814 TAATGCACGCCATGTAGTCT 57.020 45.000 0.00 0.00 33.49 3.24
657 658 1.372582 AATGCACGCCATGTAGTCTG 58.627 50.000 0.00 0.00 33.49 3.51
658 659 0.250234 ATGCACGCCATGTAGTCTGT 59.750 50.000 0.00 0.00 31.48 3.41
659 660 0.670239 TGCACGCCATGTAGTCTGTG 60.670 55.000 0.00 0.00 0.00 3.66
660 661 1.970917 GCACGCCATGTAGTCTGTGC 61.971 60.000 0.00 0.00 44.72 4.57
661 662 0.670239 CACGCCATGTAGTCTGTGCA 60.670 55.000 0.00 0.00 0.00 4.57
662 663 0.670546 ACGCCATGTAGTCTGTGCAC 60.671 55.000 10.75 10.75 0.00 4.57
663 664 1.361668 CGCCATGTAGTCTGTGCACC 61.362 60.000 15.69 0.00 0.00 5.01
664 665 1.361668 GCCATGTAGTCTGTGCACCG 61.362 60.000 15.69 8.41 0.00 4.94
665 666 0.246360 CCATGTAGTCTGTGCACCGA 59.754 55.000 15.69 11.16 0.00 4.69
666 667 1.350193 CATGTAGTCTGTGCACCGAC 58.650 55.000 28.02 28.02 0.00 4.79
667 668 1.067565 CATGTAGTCTGTGCACCGACT 60.068 52.381 35.83 35.83 42.67 4.18
668 669 1.900245 TGTAGTCTGTGCACCGACTA 58.100 50.000 34.06 34.06 40.67 2.59
669 670 1.810755 TGTAGTCTGTGCACCGACTAG 59.189 52.381 36.64 19.89 41.80 2.57
670 671 1.811359 GTAGTCTGTGCACCGACTAGT 59.189 52.381 36.64 22.72 41.80 2.57
671 672 2.195741 AGTCTGTGCACCGACTAGTA 57.804 50.000 34.07 5.64 38.63 1.82
672 673 2.724454 AGTCTGTGCACCGACTAGTAT 58.276 47.619 34.07 16.14 38.63 2.12
673 674 3.090037 AGTCTGTGCACCGACTAGTATT 58.910 45.455 34.07 15.50 38.63 1.89
674 675 4.267536 AGTCTGTGCACCGACTAGTATTA 58.732 43.478 34.07 3.66 38.63 0.98
675 676 4.703575 AGTCTGTGCACCGACTAGTATTAA 59.296 41.667 34.07 3.46 38.63 1.40
676 677 5.184479 AGTCTGTGCACCGACTAGTATTAAA 59.816 40.000 34.07 3.02 38.63 1.52
677 678 5.287992 GTCTGTGCACCGACTAGTATTAAAC 59.712 44.000 27.98 3.81 0.00 2.01
678 679 5.184479 TCTGTGCACCGACTAGTATTAAACT 59.816 40.000 15.69 0.00 42.62 2.66
679 680 6.375174 TCTGTGCACCGACTAGTATTAAACTA 59.625 38.462 15.69 0.00 39.80 2.24
708 709 6.093771 GTCTCTACTCCTAATGAACGACTTGA 59.906 42.308 0.00 0.00 0.00 3.02
720 721 6.267496 TGAACGACTTGATGAATAGTCTCA 57.733 37.500 0.00 0.00 38.86 3.27
734 735 7.748847 TGAATAGTCTCAGCGGTTTAATTTTC 58.251 34.615 0.00 0.00 0.00 2.29
738 739 4.215613 GTCTCAGCGGTTTAATTTTCCTGT 59.784 41.667 0.00 0.00 0.00 4.00
739 740 4.825085 TCTCAGCGGTTTAATTTTCCTGTT 59.175 37.500 0.00 0.00 0.00 3.16
1017 1132 2.173669 CGTCGGAATCGCTGCCAAT 61.174 57.895 0.00 0.00 36.13 3.16
1049 1164 4.183686 GATCGTCGCCGTCCGGAA 62.184 66.667 5.23 0.00 37.50 4.30
1358 1518 0.109153 TGTAGTAGAGCCCGCCGATA 59.891 55.000 0.00 0.00 0.00 2.92
1514 2063 8.977267 TTGATGGAATTGGAAATCAAAAGTTT 57.023 26.923 0.00 0.00 39.05 2.66
1645 2354 5.113383 TGATCAATTATCGTACACGCCTTT 58.887 37.500 0.00 0.00 37.42 3.11
2169 3572 7.750229 TTTGCATCTTGTCTAACTCTTGAAT 57.250 32.000 0.00 0.00 0.00 2.57
2233 3636 1.171308 CCAGCCAACAGGACTGAATG 58.829 55.000 6.29 4.84 32.03 2.67
3343 5295 4.321899 GCCTTTCAAATATGCAAGTGTCCA 60.322 41.667 0.00 0.00 29.06 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.130955 CTTTGCAACATGTTCGGCAC 58.869 50.000 19.83 4.57 35.74 5.01
12 13 0.597118 GCTTTGCAACATGTTCGGCA 60.597 50.000 17.07 17.07 0.00 5.69
13 14 1.284297 GGCTTTGCAACATGTTCGGC 61.284 55.000 8.48 11.00 0.00 5.54
14 15 0.031857 TGGCTTTGCAACATGTTCGG 59.968 50.000 8.48 0.00 0.00 4.30
15 16 1.269206 ACTGGCTTTGCAACATGTTCG 60.269 47.619 8.48 5.92 0.00 3.95
16 17 2.397549 GACTGGCTTTGCAACATGTTC 58.602 47.619 8.48 4.68 0.00 3.18
17 18 1.069049 GGACTGGCTTTGCAACATGTT 59.931 47.619 4.92 4.92 0.00 2.71
18 19 0.675633 GGACTGGCTTTGCAACATGT 59.324 50.000 0.00 0.00 0.00 3.21
19 20 0.963962 AGGACTGGCTTTGCAACATG 59.036 50.000 0.00 0.00 0.00 3.21
20 21 1.251251 GAGGACTGGCTTTGCAACAT 58.749 50.000 0.00 0.00 0.00 2.71
21 22 0.106769 TGAGGACTGGCTTTGCAACA 60.107 50.000 0.00 0.00 0.00 3.33
22 23 1.032014 TTGAGGACTGGCTTTGCAAC 58.968 50.000 0.00 0.00 0.00 4.17
23 24 1.999648 ATTGAGGACTGGCTTTGCAA 58.000 45.000 0.00 0.00 0.00 4.08
24 25 2.877097 TATTGAGGACTGGCTTTGCA 57.123 45.000 0.00 0.00 0.00 4.08
25 26 2.223665 GCATATTGAGGACTGGCTTTGC 60.224 50.000 0.00 0.00 0.00 3.68
26 27 3.285484 AGCATATTGAGGACTGGCTTTG 58.715 45.455 0.00 0.00 0.00 2.77
27 28 3.659183 AGCATATTGAGGACTGGCTTT 57.341 42.857 0.00 0.00 0.00 3.51
28 29 3.659183 AAGCATATTGAGGACTGGCTT 57.341 42.857 0.00 0.00 35.48 4.35
29 30 3.713764 ACTAAGCATATTGAGGACTGGCT 59.286 43.478 0.00 0.00 0.00 4.75
30 31 4.078639 ACTAAGCATATTGAGGACTGGC 57.921 45.455 0.00 0.00 0.00 4.85
46 47 9.169468 CACACAACAAATAAAAGTGCTACTAAG 57.831 33.333 0.00 0.00 33.69 2.18
47 48 7.646130 GCACACAACAAATAAAAGTGCTACTAA 59.354 33.333 0.00 0.00 45.24 2.24
48 49 7.136119 GCACACAACAAATAAAAGTGCTACTA 58.864 34.615 0.00 0.00 45.24 1.82
49 50 5.977129 GCACACAACAAATAAAAGTGCTACT 59.023 36.000 0.00 0.00 45.24 2.57
50 51 6.197788 GCACACAACAAATAAAAGTGCTAC 57.802 37.500 0.00 0.00 45.24 3.58
54 55 6.019640 CCTCAAGCACACAACAAATAAAAGTG 60.020 38.462 0.00 0.00 36.34 3.16
55 56 6.042143 CCTCAAGCACACAACAAATAAAAGT 58.958 36.000 0.00 0.00 0.00 2.66
56 57 6.042143 ACCTCAAGCACACAACAAATAAAAG 58.958 36.000 0.00 0.00 0.00 2.27
57 58 5.971763 ACCTCAAGCACACAACAAATAAAA 58.028 33.333 0.00 0.00 0.00 1.52
58 59 5.126222 TGACCTCAAGCACACAACAAATAAA 59.874 36.000 0.00 0.00 0.00 1.40
59 60 4.642437 TGACCTCAAGCACACAACAAATAA 59.358 37.500 0.00 0.00 0.00 1.40
60 61 4.203226 TGACCTCAAGCACACAACAAATA 58.797 39.130 0.00 0.00 0.00 1.40
61 62 3.023119 TGACCTCAAGCACACAACAAAT 58.977 40.909 0.00 0.00 0.00 2.32
62 63 2.441410 TGACCTCAAGCACACAACAAA 58.559 42.857 0.00 0.00 0.00 2.83
63 64 2.121291 TGACCTCAAGCACACAACAA 57.879 45.000 0.00 0.00 0.00 2.83
64 65 2.346766 ATGACCTCAAGCACACAACA 57.653 45.000 0.00 0.00 0.00 3.33
65 66 3.058224 GGTAATGACCTCAAGCACACAAC 60.058 47.826 0.00 0.00 43.16 3.32
66 67 3.146066 GGTAATGACCTCAAGCACACAA 58.854 45.455 0.00 0.00 43.16 3.33
67 68 2.778299 GGTAATGACCTCAAGCACACA 58.222 47.619 0.00 0.00 43.16 3.72
79 80 2.351726 GCAATGACGTGGAGGTAATGAC 59.648 50.000 0.00 0.00 0.00 3.06
80 81 2.236146 AGCAATGACGTGGAGGTAATGA 59.764 45.455 0.00 0.00 0.00 2.57
81 82 2.632377 AGCAATGACGTGGAGGTAATG 58.368 47.619 0.00 0.00 0.00 1.90
82 83 4.380531 CATAGCAATGACGTGGAGGTAAT 58.619 43.478 0.00 0.00 34.84 1.89
83 84 3.431626 CCATAGCAATGACGTGGAGGTAA 60.432 47.826 0.00 0.00 34.84 2.85
84 85 2.102420 CCATAGCAATGACGTGGAGGTA 59.898 50.000 0.00 0.00 34.84 3.08
85 86 1.134401 CCATAGCAATGACGTGGAGGT 60.134 52.381 0.00 0.00 34.84 3.85
86 87 1.586422 CCATAGCAATGACGTGGAGG 58.414 55.000 0.00 0.00 34.84 4.30
87 88 0.940126 GCCATAGCAATGACGTGGAG 59.060 55.000 0.00 0.00 39.53 3.86
88 89 3.079131 GCCATAGCAATGACGTGGA 57.921 52.632 0.00 0.00 39.53 4.02
104 105 5.296748 ACACATGTTTTTCTTGGTATTGCC 58.703 37.500 0.00 0.00 37.90 4.52
105 106 6.089417 GCTACACATGTTTTTCTTGGTATTGC 59.911 38.462 0.00 0.00 0.00 3.56
106 107 7.370383 AGCTACACATGTTTTTCTTGGTATTG 58.630 34.615 0.00 0.00 0.00 1.90
107 108 7.309194 GGAGCTACACATGTTTTTCTTGGTATT 60.309 37.037 0.00 0.00 0.00 1.89
108 109 6.151144 GGAGCTACACATGTTTTTCTTGGTAT 59.849 38.462 0.00 0.00 0.00 2.73
109 110 5.472137 GGAGCTACACATGTTTTTCTTGGTA 59.528 40.000 0.00 0.00 0.00 3.25
110 111 4.278419 GGAGCTACACATGTTTTTCTTGGT 59.722 41.667 0.00 0.00 0.00 3.67
111 112 4.520492 AGGAGCTACACATGTTTTTCTTGG 59.480 41.667 0.00 0.00 0.00 3.61
112 113 5.695851 AGGAGCTACACATGTTTTTCTTG 57.304 39.130 0.00 0.00 0.00 3.02
113 114 8.947115 GTAATAGGAGCTACACATGTTTTTCTT 58.053 33.333 0.00 0.00 0.00 2.52
114 115 7.277981 CGTAATAGGAGCTACACATGTTTTTCT 59.722 37.037 0.00 0.00 0.00 2.52
115 116 7.064253 ACGTAATAGGAGCTACACATGTTTTTC 59.936 37.037 0.00 0.00 0.00 2.29
116 117 6.877322 ACGTAATAGGAGCTACACATGTTTTT 59.123 34.615 0.00 0.00 0.00 1.94
117 118 6.312918 CACGTAATAGGAGCTACACATGTTTT 59.687 38.462 0.00 0.00 0.00 2.43
118 119 5.810587 CACGTAATAGGAGCTACACATGTTT 59.189 40.000 0.00 0.00 0.00 2.83
119 120 5.348986 CACGTAATAGGAGCTACACATGTT 58.651 41.667 0.00 0.00 0.00 2.71
120 121 4.202121 CCACGTAATAGGAGCTACACATGT 60.202 45.833 0.00 0.00 0.00 3.21
121 122 4.037565 TCCACGTAATAGGAGCTACACATG 59.962 45.833 0.00 0.00 0.00 3.21
122 123 4.037684 GTCCACGTAATAGGAGCTACACAT 59.962 45.833 0.00 0.00 33.85 3.21
123 124 3.379372 GTCCACGTAATAGGAGCTACACA 59.621 47.826 0.00 0.00 33.85 3.72
124 125 3.379372 TGTCCACGTAATAGGAGCTACAC 59.621 47.826 0.00 0.00 33.85 2.90
125 126 3.379372 GTGTCCACGTAATAGGAGCTACA 59.621 47.826 0.00 0.00 33.85 2.74
126 127 3.379372 TGTGTCCACGTAATAGGAGCTAC 59.621 47.826 0.00 0.00 33.85 3.58
127 128 3.623703 TGTGTCCACGTAATAGGAGCTA 58.376 45.455 0.00 0.00 33.85 3.32
128 129 2.453521 TGTGTCCACGTAATAGGAGCT 58.546 47.619 0.00 0.00 33.85 4.09
129 130 2.953466 TGTGTCCACGTAATAGGAGC 57.047 50.000 0.00 0.00 33.85 4.70
130 131 3.187700 GCTTGTGTCCACGTAATAGGAG 58.812 50.000 0.00 0.00 33.85 3.69
131 132 2.563620 TGCTTGTGTCCACGTAATAGGA 59.436 45.455 0.00 0.00 0.00 2.94
132 133 2.930040 CTGCTTGTGTCCACGTAATAGG 59.070 50.000 0.00 0.00 0.00 2.57
133 134 3.585862 ACTGCTTGTGTCCACGTAATAG 58.414 45.455 0.00 0.00 0.00 1.73
134 135 3.581755 GACTGCTTGTGTCCACGTAATA 58.418 45.455 0.00 0.00 0.00 0.98
135 136 2.413837 GACTGCTTGTGTCCACGTAAT 58.586 47.619 0.00 0.00 0.00 1.89
136 137 1.860676 GACTGCTTGTGTCCACGTAA 58.139 50.000 0.00 0.00 0.00 3.18
137 138 3.580904 GACTGCTTGTGTCCACGTA 57.419 52.632 0.00 0.00 0.00 3.57
138 139 4.438346 GACTGCTTGTGTCCACGT 57.562 55.556 0.00 0.00 0.00 4.49
143 144 6.210287 AGTATTACTAGGACTGCTTGTGTC 57.790 41.667 0.00 0.00 0.00 3.67
144 145 7.336161 CTAGTATTACTAGGACTGCTTGTGT 57.664 40.000 19.18 0.00 43.37 3.72
156 157 6.017275 AGTGCAAGTACGCCTAGTATTACTAG 60.017 42.308 19.77 19.77 45.93 2.57
157 158 5.824624 AGTGCAAGTACGCCTAGTATTACTA 59.175 40.000 3.61 3.61 37.69 1.82
158 159 4.643784 AGTGCAAGTACGCCTAGTATTACT 59.356 41.667 1.30 1.30 37.69 2.24
159 160 4.929781 AGTGCAAGTACGCCTAGTATTAC 58.070 43.478 0.00 0.00 37.69 1.89
160 161 5.345702 CAAGTGCAAGTACGCCTAGTATTA 58.654 41.667 0.00 0.00 37.69 0.98
161 162 4.181578 CAAGTGCAAGTACGCCTAGTATT 58.818 43.478 0.00 0.00 37.69 1.89
162 163 3.782046 CAAGTGCAAGTACGCCTAGTAT 58.218 45.455 0.00 0.00 37.69 2.12
163 164 2.673043 GCAAGTGCAAGTACGCCTAGTA 60.673 50.000 0.00 0.00 41.59 1.82
164 165 1.939838 GCAAGTGCAAGTACGCCTAGT 60.940 52.381 0.00 0.00 41.59 2.57
165 166 0.721718 GCAAGTGCAAGTACGCCTAG 59.278 55.000 0.00 0.00 41.59 3.02
166 167 2.835605 GCAAGTGCAAGTACGCCTA 58.164 52.632 0.00 0.00 41.59 3.93
167 168 3.655481 GCAAGTGCAAGTACGCCT 58.345 55.556 0.00 0.00 41.59 5.52
177 178 2.186826 AGTTCCCACGTGCAAGTGC 61.187 57.895 25.05 12.69 40.59 4.40
178 179 1.648720 CAGTTCCCACGTGCAAGTG 59.351 57.895 23.76 23.76 41.53 3.16
179 180 2.186826 GCAGTTCCCACGTGCAAGT 61.187 57.895 10.91 0.00 37.16 3.16
180 181 2.186160 TGCAGTTCCCACGTGCAAG 61.186 57.895 10.91 0.00 44.05 4.01
181 182 2.124529 TGCAGTTCCCACGTGCAA 60.125 55.556 10.91 1.61 44.05 4.08
183 184 0.878416 TTTATGCAGTTCCCACGTGC 59.122 50.000 10.91 0.00 37.73 5.34
184 185 2.095263 CCTTTTATGCAGTTCCCACGTG 60.095 50.000 9.08 9.08 0.00 4.49
185 186 2.159382 CCTTTTATGCAGTTCCCACGT 58.841 47.619 0.00 0.00 0.00 4.49
186 187 2.432444 TCCTTTTATGCAGTTCCCACG 58.568 47.619 0.00 0.00 0.00 4.94
187 188 4.079253 TCTTCCTTTTATGCAGTTCCCAC 58.921 43.478 0.00 0.00 0.00 4.61
188 189 4.380843 TCTTCCTTTTATGCAGTTCCCA 57.619 40.909 0.00 0.00 0.00 4.37
189 190 4.949856 TCATCTTCCTTTTATGCAGTTCCC 59.050 41.667 0.00 0.00 0.00 3.97
190 191 6.705863 ATCATCTTCCTTTTATGCAGTTCC 57.294 37.500 0.00 0.00 0.00 3.62
191 192 7.859875 GCTAATCATCTTCCTTTTATGCAGTTC 59.140 37.037 0.00 0.00 0.00 3.01
192 193 7.467811 CGCTAATCATCTTCCTTTTATGCAGTT 60.468 37.037 0.00 0.00 0.00 3.16
193 194 6.017605 CGCTAATCATCTTCCTTTTATGCAGT 60.018 38.462 0.00 0.00 0.00 4.40
194 195 6.203530 TCGCTAATCATCTTCCTTTTATGCAG 59.796 38.462 0.00 0.00 0.00 4.41
195 196 6.054941 TCGCTAATCATCTTCCTTTTATGCA 58.945 36.000 0.00 0.00 0.00 3.96
196 197 6.545504 TCGCTAATCATCTTCCTTTTATGC 57.454 37.500 0.00 0.00 0.00 3.14
197 198 9.443283 CTTTTCGCTAATCATCTTCCTTTTATG 57.557 33.333 0.00 0.00 0.00 1.90
198 199 8.131731 GCTTTTCGCTAATCATCTTCCTTTTAT 58.868 33.333 0.00 0.00 35.14 1.40
199 200 7.120579 TGCTTTTCGCTAATCATCTTCCTTTTA 59.879 33.333 0.00 0.00 40.11 1.52
200 201 6.071952 TGCTTTTCGCTAATCATCTTCCTTTT 60.072 34.615 0.00 0.00 40.11 2.27
201 202 5.415701 TGCTTTTCGCTAATCATCTTCCTTT 59.584 36.000 0.00 0.00 40.11 3.11
202 203 4.943705 TGCTTTTCGCTAATCATCTTCCTT 59.056 37.500 0.00 0.00 40.11 3.36
203 204 4.517285 TGCTTTTCGCTAATCATCTTCCT 58.483 39.130 0.00 0.00 40.11 3.36
204 205 4.882671 TGCTTTTCGCTAATCATCTTCC 57.117 40.909 0.00 0.00 40.11 3.46
205 206 7.413475 TCTATGCTTTTCGCTAATCATCTTC 57.587 36.000 0.00 0.00 40.11 2.87
206 207 7.976135 ATCTATGCTTTTCGCTAATCATCTT 57.024 32.000 0.00 0.00 40.11 2.40
207 208 7.094890 CCAATCTATGCTTTTCGCTAATCATCT 60.095 37.037 0.00 0.00 40.11 2.90
208 209 7.020010 CCAATCTATGCTTTTCGCTAATCATC 58.980 38.462 0.00 0.00 40.11 2.92
209 210 6.569226 GCCAATCTATGCTTTTCGCTAATCAT 60.569 38.462 0.00 0.00 40.11 2.45
210 211 5.277974 GCCAATCTATGCTTTTCGCTAATCA 60.278 40.000 0.00 0.00 40.11 2.57
211 212 5.049129 AGCCAATCTATGCTTTTCGCTAATC 60.049 40.000 0.00 0.00 40.11 1.75
212 213 4.823989 AGCCAATCTATGCTTTTCGCTAAT 59.176 37.500 0.00 0.00 40.11 1.73
213 214 4.199310 AGCCAATCTATGCTTTTCGCTAA 58.801 39.130 0.00 0.00 40.11 3.09
214 215 3.808728 AGCCAATCTATGCTTTTCGCTA 58.191 40.909 0.00 0.00 40.11 4.26
215 216 2.648059 AGCCAATCTATGCTTTTCGCT 58.352 42.857 0.00 0.00 40.11 4.93
216 217 3.111098 CAAGCCAATCTATGCTTTTCGC 58.889 45.455 0.00 0.00 45.09 4.70
217 218 4.361451 ACAAGCCAATCTATGCTTTTCG 57.639 40.909 0.00 0.00 45.09 3.46
218 219 9.801873 TTAATTACAAGCCAATCTATGCTTTTC 57.198 29.630 0.00 0.00 45.09 2.29
246 247 8.668353 CGATCATTGTTTCTCTTTCCTTCATTA 58.332 33.333 0.00 0.00 0.00 1.90
247 248 7.362401 CCGATCATTGTTTCTCTTTCCTTCATT 60.362 37.037 0.00 0.00 0.00 2.57
248 249 6.094603 CCGATCATTGTTTCTCTTTCCTTCAT 59.905 38.462 0.00 0.00 0.00 2.57
249 250 5.412594 CCGATCATTGTTTCTCTTTCCTTCA 59.587 40.000 0.00 0.00 0.00 3.02
250 251 5.643777 TCCGATCATTGTTTCTCTTTCCTTC 59.356 40.000 0.00 0.00 0.00 3.46
251 252 5.560724 TCCGATCATTGTTTCTCTTTCCTT 58.439 37.500 0.00 0.00 0.00 3.36
252 253 5.165961 TCCGATCATTGTTTCTCTTTCCT 57.834 39.130 0.00 0.00 0.00 3.36
253 254 5.819901 AGATCCGATCATTGTTTCTCTTTCC 59.180 40.000 11.01 0.00 0.00 3.13
254 255 6.917217 AGATCCGATCATTGTTTCTCTTTC 57.083 37.500 11.01 0.00 0.00 2.62
255 256 6.317391 GGAAGATCCGATCATTGTTTCTCTTT 59.683 38.462 11.01 0.00 0.00 2.52
256 257 5.819901 GGAAGATCCGATCATTGTTTCTCTT 59.180 40.000 11.01 0.00 0.00 2.85
257 258 5.130145 AGGAAGATCCGATCATTGTTTCTCT 59.870 40.000 11.01 3.02 42.75 3.10
258 259 5.236047 CAGGAAGATCCGATCATTGTTTCTC 59.764 44.000 11.01 1.15 42.75 2.87
259 260 5.121811 CAGGAAGATCCGATCATTGTTTCT 58.878 41.667 11.01 0.00 42.75 2.52
260 261 4.878397 ACAGGAAGATCCGATCATTGTTTC 59.122 41.667 11.01 5.21 42.75 2.78
261 262 4.848357 ACAGGAAGATCCGATCATTGTTT 58.152 39.130 11.01 0.00 42.75 2.83
262 263 4.494091 ACAGGAAGATCCGATCATTGTT 57.506 40.909 11.01 0.00 42.75 2.83
263 264 5.129485 AGTTACAGGAAGATCCGATCATTGT 59.871 40.000 11.01 10.48 42.75 2.71
264 265 5.464722 CAGTTACAGGAAGATCCGATCATTG 59.535 44.000 11.01 5.74 42.75 2.82
265 266 5.605534 CAGTTACAGGAAGATCCGATCATT 58.394 41.667 11.01 2.54 42.75 2.57
266 267 4.502259 GCAGTTACAGGAAGATCCGATCAT 60.502 45.833 11.01 0.00 42.75 2.45
267 268 3.181475 GCAGTTACAGGAAGATCCGATCA 60.181 47.826 11.01 0.00 42.75 2.92
268 269 3.385577 GCAGTTACAGGAAGATCCGATC 58.614 50.000 0.00 0.00 42.75 3.69
269 270 2.223829 CGCAGTTACAGGAAGATCCGAT 60.224 50.000 0.00 0.00 42.75 4.18
270 271 1.134367 CGCAGTTACAGGAAGATCCGA 59.866 52.381 0.00 0.00 42.75 4.55
271 272 1.560923 CGCAGTTACAGGAAGATCCG 58.439 55.000 0.00 0.00 42.75 4.18
272 273 1.134670 AGCGCAGTTACAGGAAGATCC 60.135 52.381 11.47 0.00 36.58 3.36
273 274 1.929836 CAGCGCAGTTACAGGAAGATC 59.070 52.381 11.47 0.00 0.00 2.75
274 275 1.550524 TCAGCGCAGTTACAGGAAGAT 59.449 47.619 11.47 0.00 0.00 2.40
275 276 0.966179 TCAGCGCAGTTACAGGAAGA 59.034 50.000 11.47 0.00 0.00 2.87
276 277 1.354040 CTCAGCGCAGTTACAGGAAG 58.646 55.000 11.47 0.00 0.00 3.46
277 278 0.670546 GCTCAGCGCAGTTACAGGAA 60.671 55.000 11.47 0.00 38.92 3.36
278 279 1.079819 GCTCAGCGCAGTTACAGGA 60.080 57.895 11.47 0.00 38.92 3.86
279 280 2.103042 GGCTCAGCGCAGTTACAGG 61.103 63.158 11.47 0.00 41.67 4.00
280 281 2.447887 CGGCTCAGCGCAGTTACAG 61.448 63.158 11.47 0.00 41.67 2.74
281 282 2.428960 TTCGGCTCAGCGCAGTTACA 62.429 55.000 11.47 0.00 41.67 2.41
282 283 1.736645 TTCGGCTCAGCGCAGTTAC 60.737 57.895 11.47 0.00 41.67 2.50
283 284 1.736645 GTTCGGCTCAGCGCAGTTA 60.737 57.895 11.47 0.00 41.67 2.24
284 285 2.154798 TAGTTCGGCTCAGCGCAGTT 62.155 55.000 11.47 0.00 41.67 3.16
285 286 1.949847 ATAGTTCGGCTCAGCGCAGT 61.950 55.000 11.47 0.00 41.67 4.40
286 287 0.807667 AATAGTTCGGCTCAGCGCAG 60.808 55.000 11.47 0.00 41.67 5.18
287 288 1.083806 CAATAGTTCGGCTCAGCGCA 61.084 55.000 11.47 0.00 41.67 6.09
288 289 1.084370 ACAATAGTTCGGCTCAGCGC 61.084 55.000 0.00 0.00 38.13 5.92
289 290 0.924090 GACAATAGTTCGGCTCAGCG 59.076 55.000 0.00 0.00 0.00 5.18
290 291 0.924090 CGACAATAGTTCGGCTCAGC 59.076 55.000 0.00 0.00 0.00 4.26
291 292 1.560923 CCGACAATAGTTCGGCTCAG 58.439 55.000 0.00 0.00 40.25 3.35
292 293 3.733236 CCGACAATAGTTCGGCTCA 57.267 52.632 0.00 0.00 40.25 4.26
297 298 2.809446 TCTGATGCCGACAATAGTTCG 58.191 47.619 0.00 0.00 0.00 3.95
298 299 4.811024 TGAATCTGATGCCGACAATAGTTC 59.189 41.667 0.00 0.00 0.00 3.01
299 300 4.769688 TGAATCTGATGCCGACAATAGTT 58.230 39.130 0.00 0.00 0.00 2.24
300 301 4.406648 TGAATCTGATGCCGACAATAGT 57.593 40.909 0.00 0.00 0.00 2.12
301 302 4.753610 ACATGAATCTGATGCCGACAATAG 59.246 41.667 0.00 0.00 0.00 1.73
302 303 4.707105 ACATGAATCTGATGCCGACAATA 58.293 39.130 0.00 0.00 0.00 1.90
303 304 3.548770 ACATGAATCTGATGCCGACAAT 58.451 40.909 0.00 0.00 0.00 2.71
304 305 2.989909 ACATGAATCTGATGCCGACAA 58.010 42.857 0.00 0.00 0.00 3.18
305 306 2.679336 CAACATGAATCTGATGCCGACA 59.321 45.455 0.00 0.00 0.00 4.35
306 307 2.679837 ACAACATGAATCTGATGCCGAC 59.320 45.455 0.00 0.00 0.00 4.79
307 308 2.679336 CACAACATGAATCTGATGCCGA 59.321 45.455 0.00 0.00 0.00 5.54
308 309 2.421073 ACACAACATGAATCTGATGCCG 59.579 45.455 0.00 0.00 0.00 5.69
309 310 4.637534 AGTACACAACATGAATCTGATGCC 59.362 41.667 0.00 0.00 0.00 4.40
310 311 5.122869 ACAGTACACAACATGAATCTGATGC 59.877 40.000 0.00 0.00 32.55 3.91
311 312 6.732531 ACAGTACACAACATGAATCTGATG 57.267 37.500 0.00 0.00 32.55 3.07
312 313 7.547019 CAGTACAGTACACAACATGAATCTGAT 59.453 37.037 13.37 0.00 32.55 2.90
313 314 6.868339 CAGTACAGTACACAACATGAATCTGA 59.132 38.462 13.37 0.00 32.55 3.27
314 315 6.401474 GCAGTACAGTACACAACATGAATCTG 60.401 42.308 13.37 0.00 33.53 2.90
315 316 5.639506 GCAGTACAGTACACAACATGAATCT 59.360 40.000 13.37 0.00 0.00 2.40
316 317 5.444613 CGCAGTACAGTACACAACATGAATC 60.445 44.000 13.37 0.00 0.00 2.52
317 318 4.388773 CGCAGTACAGTACACAACATGAAT 59.611 41.667 13.37 0.00 0.00 2.57
318 319 3.738791 CGCAGTACAGTACACAACATGAA 59.261 43.478 13.37 0.00 0.00 2.57
319 320 3.243602 ACGCAGTACAGTACACAACATGA 60.244 43.478 13.37 0.00 41.94 3.07
320 321 3.057019 ACGCAGTACAGTACACAACATG 58.943 45.455 13.37 2.60 41.94 3.21
321 322 3.380479 ACGCAGTACAGTACACAACAT 57.620 42.857 13.37 0.00 41.94 2.71
322 323 2.875087 ACGCAGTACAGTACACAACA 57.125 45.000 13.37 0.00 41.94 3.33
336 337 2.279120 GCCGAGGAGATGACGCAG 60.279 66.667 0.00 0.00 0.00 5.18
337 338 2.755876 AGCCGAGGAGATGACGCA 60.756 61.111 0.00 0.00 0.00 5.24
338 339 2.279120 CAGCCGAGGAGATGACGC 60.279 66.667 0.00 0.00 0.00 5.19
339 340 1.459455 ATCCAGCCGAGGAGATGACG 61.459 60.000 0.00 0.00 41.90 4.35
340 341 0.316841 GATCCAGCCGAGGAGATGAC 59.683 60.000 0.00 0.00 41.90 3.06
341 342 1.175347 CGATCCAGCCGAGGAGATGA 61.175 60.000 0.00 0.00 41.90 2.92
342 343 1.288439 CGATCCAGCCGAGGAGATG 59.712 63.158 0.00 0.00 41.90 2.90
343 344 2.569354 GCGATCCAGCCGAGGAGAT 61.569 63.158 0.00 0.00 41.90 2.75
344 345 3.219928 GCGATCCAGCCGAGGAGA 61.220 66.667 0.00 0.00 41.90 3.71
352 353 3.195698 GACCAACGGCGATCCAGC 61.196 66.667 16.62 0.00 0.00 4.85
353 354 1.811266 CTGACCAACGGCGATCCAG 60.811 63.158 16.62 9.36 0.00 3.86
354 355 1.613317 ATCTGACCAACGGCGATCCA 61.613 55.000 16.62 2.95 0.00 3.41
355 356 0.462047 AATCTGACCAACGGCGATCC 60.462 55.000 16.62 0.00 0.00 3.36
356 357 1.062587 CAAATCTGACCAACGGCGATC 59.937 52.381 16.62 6.07 0.00 3.69
357 358 1.086696 CAAATCTGACCAACGGCGAT 58.913 50.000 16.62 0.00 0.00 4.58
358 359 0.034198 TCAAATCTGACCAACGGCGA 59.966 50.000 16.62 0.00 0.00 5.54
359 360 0.443869 CTCAAATCTGACCAACGGCG 59.556 55.000 4.80 4.80 0.00 6.46
360 361 1.464997 GACTCAAATCTGACCAACGGC 59.535 52.381 0.00 0.00 0.00 5.68
361 362 2.076863 GGACTCAAATCTGACCAACGG 58.923 52.381 0.00 0.00 0.00 4.44
362 363 1.726791 CGGACTCAAATCTGACCAACG 59.273 52.381 0.00 0.00 0.00 4.10
363 364 2.076863 CCGGACTCAAATCTGACCAAC 58.923 52.381 0.00 0.00 0.00 3.77
364 365 1.974957 TCCGGACTCAAATCTGACCAA 59.025 47.619 0.00 0.00 0.00 3.67
365 366 1.639722 TCCGGACTCAAATCTGACCA 58.360 50.000 0.00 0.00 0.00 4.02
366 367 2.483889 GGATCCGGACTCAAATCTGACC 60.484 54.545 6.12 0.00 0.00 4.02
367 368 2.799917 CGGATCCGGACTCAAATCTGAC 60.800 54.545 26.95 0.00 35.56 3.51
368 369 1.409064 CGGATCCGGACTCAAATCTGA 59.591 52.381 26.95 0.00 35.56 3.27
369 370 1.409064 TCGGATCCGGACTCAAATCTG 59.591 52.381 32.79 4.35 40.25 2.90
370 371 1.776662 TCGGATCCGGACTCAAATCT 58.223 50.000 32.79 0.00 40.25 2.40
371 372 2.224066 ACATCGGATCCGGACTCAAATC 60.224 50.000 32.79 0.00 40.25 2.17
372 373 1.762957 ACATCGGATCCGGACTCAAAT 59.237 47.619 32.79 14.96 40.25 2.32
373 374 1.191535 ACATCGGATCCGGACTCAAA 58.808 50.000 32.79 13.17 40.25 2.69
374 375 2.061509 TACATCGGATCCGGACTCAA 57.938 50.000 32.79 13.95 40.25 3.02
375 376 2.160205 GATACATCGGATCCGGACTCA 58.840 52.381 32.79 14.74 40.25 3.41
376 377 2.095161 GTGATACATCGGATCCGGACTC 60.095 54.545 32.79 21.05 40.25 3.36
377 378 1.887198 GTGATACATCGGATCCGGACT 59.113 52.381 32.79 17.33 40.25 3.85
378 379 1.067776 GGTGATACATCGGATCCGGAC 60.068 57.143 32.79 17.35 40.25 4.79
379 380 1.254026 GGTGATACATCGGATCCGGA 58.746 55.000 32.79 19.95 40.25 5.14
380 381 0.109272 CGGTGATACATCGGATCCGG 60.109 60.000 32.79 20.49 40.25 5.14
381 382 0.879090 TCGGTGATACATCGGATCCG 59.121 55.000 28.62 28.62 38.63 4.18
382 383 1.402984 GCTCGGTGATACATCGGATCC 60.403 57.143 0.00 0.00 38.63 3.36
383 384 1.269723 TGCTCGGTGATACATCGGATC 59.730 52.381 4.65 0.00 38.63 3.36
384 385 1.270826 CTGCTCGGTGATACATCGGAT 59.729 52.381 4.65 0.00 38.63 4.18
385 386 0.668535 CTGCTCGGTGATACATCGGA 59.331 55.000 4.65 0.00 38.63 4.55
386 387 0.941463 GCTGCTCGGTGATACATCGG 60.941 60.000 4.65 0.00 38.63 4.18
387 388 1.271446 CGCTGCTCGGTGATACATCG 61.271 60.000 0.00 0.00 39.56 3.84
388 389 2.510948 CGCTGCTCGGTGATACATC 58.489 57.895 0.00 0.00 33.78 3.06
389 390 4.738198 CGCTGCTCGGTGATACAT 57.262 55.556 0.00 0.00 33.78 2.29
398 399 3.950362 TATATTCGCGTCCGCTGCTCG 62.950 57.143 5.77 1.30 39.32 5.03
399 400 0.386858 TATATTCGCGTCCGCTGCTC 60.387 55.000 5.77 0.00 39.32 4.26
400 401 0.387367 CTATATTCGCGTCCGCTGCT 60.387 55.000 5.77 0.00 39.32 4.24
401 402 1.344942 CCTATATTCGCGTCCGCTGC 61.345 60.000 5.77 0.00 39.32 5.25
402 403 1.344942 GCCTATATTCGCGTCCGCTG 61.345 60.000 5.77 3.86 39.32 5.18
403 404 1.080705 GCCTATATTCGCGTCCGCT 60.081 57.895 5.77 0.00 39.32 5.52
404 405 1.344942 CTGCCTATATTCGCGTCCGC 61.345 60.000 5.77 0.68 37.85 5.54
405 406 0.039437 ACTGCCTATATTCGCGTCCG 60.039 55.000 5.77 0.00 0.00 4.79
406 407 2.228343 AGTACTGCCTATATTCGCGTCC 59.772 50.000 5.77 0.00 0.00 4.79
407 408 3.235195 CAGTACTGCCTATATTCGCGTC 58.765 50.000 10.54 0.00 0.00 5.19
408 409 3.284323 CAGTACTGCCTATATTCGCGT 57.716 47.619 10.54 0.00 0.00 6.01
421 422 8.755941 GTTGTGTGTATATAGATTGCAGTACTG 58.244 37.037 18.93 18.93 0.00 2.74
422 423 8.474831 TGTTGTGTGTATATAGATTGCAGTACT 58.525 33.333 0.00 0.00 0.00 2.73
423 424 8.642908 TGTTGTGTGTATATAGATTGCAGTAC 57.357 34.615 0.00 0.00 0.00 2.73
424 425 7.438160 GCTGTTGTGTGTATATAGATTGCAGTA 59.562 37.037 0.00 0.00 0.00 2.74
425 426 6.258727 GCTGTTGTGTGTATATAGATTGCAGT 59.741 38.462 0.00 0.00 0.00 4.40
426 427 6.258507 TGCTGTTGTGTGTATATAGATTGCAG 59.741 38.462 0.00 0.00 0.00 4.41
427 428 6.037062 GTGCTGTTGTGTGTATATAGATTGCA 59.963 38.462 0.00 0.00 0.00 4.08
428 429 6.037062 TGTGCTGTTGTGTGTATATAGATTGC 59.963 38.462 0.00 0.00 0.00 3.56
429 430 7.538303 TGTGCTGTTGTGTGTATATAGATTG 57.462 36.000 0.00 0.00 0.00 2.67
430 431 8.450964 GTTTGTGCTGTTGTGTGTATATAGATT 58.549 33.333 0.00 0.00 0.00 2.40
431 432 7.065803 GGTTTGTGCTGTTGTGTGTATATAGAT 59.934 37.037 0.00 0.00 0.00 1.98
432 433 6.370442 GGTTTGTGCTGTTGTGTGTATATAGA 59.630 38.462 0.00 0.00 0.00 1.98
433 434 6.542852 GGTTTGTGCTGTTGTGTGTATATAG 58.457 40.000 0.00 0.00 0.00 1.31
434 435 5.120986 CGGTTTGTGCTGTTGTGTGTATATA 59.879 40.000 0.00 0.00 0.00 0.86
435 436 4.083537 CGGTTTGTGCTGTTGTGTGTATAT 60.084 41.667 0.00 0.00 0.00 0.86
436 437 3.248841 CGGTTTGTGCTGTTGTGTGTATA 59.751 43.478 0.00 0.00 0.00 1.47
437 438 2.032799 CGGTTTGTGCTGTTGTGTGTAT 59.967 45.455 0.00 0.00 0.00 2.29
438 439 1.398739 CGGTTTGTGCTGTTGTGTGTA 59.601 47.619 0.00 0.00 0.00 2.90
439 440 0.170116 CGGTTTGTGCTGTTGTGTGT 59.830 50.000 0.00 0.00 0.00 3.72
440 441 0.449786 TCGGTTTGTGCTGTTGTGTG 59.550 50.000 0.00 0.00 0.00 3.82
441 442 1.135517 GTTCGGTTTGTGCTGTTGTGT 60.136 47.619 0.00 0.00 0.00 3.72
442 443 1.135546 TGTTCGGTTTGTGCTGTTGTG 60.136 47.619 0.00 0.00 0.00 3.33
443 444 1.132262 CTGTTCGGTTTGTGCTGTTGT 59.868 47.619 0.00 0.00 0.00 3.32
444 445 1.400142 TCTGTTCGGTTTGTGCTGTTG 59.600 47.619 0.00 0.00 0.00 3.33
445 446 1.745232 TCTGTTCGGTTTGTGCTGTT 58.255 45.000 0.00 0.00 0.00 3.16
446 447 1.745232 TTCTGTTCGGTTTGTGCTGT 58.255 45.000 0.00 0.00 0.00 4.40
447 448 2.842208 TTTCTGTTCGGTTTGTGCTG 57.158 45.000 0.00 0.00 0.00 4.41
448 449 5.508200 TTATTTTCTGTTCGGTTTGTGCT 57.492 34.783 0.00 0.00 0.00 4.40
449 450 5.918011 TCATTATTTTCTGTTCGGTTTGTGC 59.082 36.000 0.00 0.00 0.00 4.57
450 451 9.061610 GTATCATTATTTTCTGTTCGGTTTGTG 57.938 33.333 0.00 0.00 0.00 3.33
451 452 8.788806 TGTATCATTATTTTCTGTTCGGTTTGT 58.211 29.630 0.00 0.00 0.00 2.83
452 453 9.619316 TTGTATCATTATTTTCTGTTCGGTTTG 57.381 29.630 0.00 0.00 0.00 2.93
497 498 9.853177 CCTGAGGTGTTATTCTTCCTAATAATT 57.147 33.333 0.00 0.00 34.67 1.40
498 499 9.225682 TCCTGAGGTGTTATTCTTCCTAATAAT 57.774 33.333 0.00 0.00 34.67 1.28
499 500 8.618240 TCCTGAGGTGTTATTCTTCCTAATAA 57.382 34.615 0.00 0.00 0.00 1.40
500 501 8.798975 ATCCTGAGGTGTTATTCTTCCTAATA 57.201 34.615 0.00 0.00 0.00 0.98
501 502 7.698163 ATCCTGAGGTGTTATTCTTCCTAAT 57.302 36.000 0.00 0.00 0.00 1.73
502 503 7.510675 AATCCTGAGGTGTTATTCTTCCTAA 57.489 36.000 0.00 0.00 0.00 2.69
503 504 7.510675 AAATCCTGAGGTGTTATTCTTCCTA 57.489 36.000 0.00 0.00 0.00 2.94
504 505 6.394345 AAATCCTGAGGTGTTATTCTTCCT 57.606 37.500 0.00 0.00 0.00 3.36
505 506 7.445707 GGATAAATCCTGAGGTGTTATTCTTCC 59.554 40.741 0.00 0.00 43.73 3.46
506 507 7.171678 CGGATAAATCCTGAGGTGTTATTCTTC 59.828 40.741 7.39 0.00 44.93 2.87
507 508 6.992715 CGGATAAATCCTGAGGTGTTATTCTT 59.007 38.462 7.39 0.00 44.93 2.52
508 509 6.326583 TCGGATAAATCCTGAGGTGTTATTCT 59.673 38.462 7.39 0.00 44.93 2.40
509 510 6.522054 TCGGATAAATCCTGAGGTGTTATTC 58.478 40.000 7.39 2.12 44.93 1.75
510 511 6.494666 TCGGATAAATCCTGAGGTGTTATT 57.505 37.500 7.39 0.00 44.93 1.40
511 512 6.270000 TCATCGGATAAATCCTGAGGTGTTAT 59.730 38.462 7.39 3.83 44.93 1.89
512 513 5.600898 TCATCGGATAAATCCTGAGGTGTTA 59.399 40.000 7.39 0.00 44.93 2.41
513 514 4.408921 TCATCGGATAAATCCTGAGGTGTT 59.591 41.667 7.39 0.00 44.93 3.32
514 515 3.967326 TCATCGGATAAATCCTGAGGTGT 59.033 43.478 7.39 0.00 44.93 4.16
515 516 4.607293 TCATCGGATAAATCCTGAGGTG 57.393 45.455 7.39 0.00 44.93 4.00
516 517 4.564406 GCATCATCGGATAAATCCTGAGGT 60.564 45.833 11.97 0.00 44.93 3.85
517 518 3.937706 GCATCATCGGATAAATCCTGAGG 59.062 47.826 7.39 7.72 44.93 3.86
518 519 3.937706 GGCATCATCGGATAAATCCTGAG 59.062 47.826 7.39 2.02 44.93 3.35
519 520 3.307691 GGGCATCATCGGATAAATCCTGA 60.308 47.826 7.39 5.58 44.93 3.86
520 521 3.012518 GGGCATCATCGGATAAATCCTG 58.987 50.000 7.39 0.31 44.93 3.86
521 522 2.644299 TGGGCATCATCGGATAAATCCT 59.356 45.455 7.39 0.00 44.93 3.24
522 523 3.012518 CTGGGCATCATCGGATAAATCC 58.987 50.000 0.00 0.00 43.65 3.01
523 524 3.686726 GTCTGGGCATCATCGGATAAATC 59.313 47.826 0.00 0.00 30.87 2.17
524 525 3.328931 AGTCTGGGCATCATCGGATAAAT 59.671 43.478 0.00 0.00 30.87 1.40
525 526 2.705658 AGTCTGGGCATCATCGGATAAA 59.294 45.455 0.00 0.00 30.87 1.40
526 527 2.037641 CAGTCTGGGCATCATCGGATAA 59.962 50.000 0.00 0.00 30.87 1.75
527 528 1.620323 CAGTCTGGGCATCATCGGATA 59.380 52.381 0.00 0.00 30.87 2.59
528 529 0.395686 CAGTCTGGGCATCATCGGAT 59.604 55.000 0.00 0.00 0.00 4.18
529 530 0.687427 TCAGTCTGGGCATCATCGGA 60.687 55.000 0.00 0.00 0.00 4.55
530 531 0.395686 ATCAGTCTGGGCATCATCGG 59.604 55.000 0.00 0.00 0.00 4.18
531 532 2.930023 GCTATCAGTCTGGGCATCATCG 60.930 54.545 0.00 0.00 0.00 3.84
532 533 2.038164 TGCTATCAGTCTGGGCATCATC 59.962 50.000 0.00 0.00 0.00 2.92
533 534 2.038689 CTGCTATCAGTCTGGGCATCAT 59.961 50.000 13.44 0.00 35.61 2.45
534 535 1.415289 CTGCTATCAGTCTGGGCATCA 59.585 52.381 13.44 1.43 35.61 3.07
535 536 1.690893 TCTGCTATCAGTCTGGGCATC 59.309 52.381 13.44 0.00 41.10 3.91
536 537 1.415659 GTCTGCTATCAGTCTGGGCAT 59.584 52.381 13.44 0.00 41.10 4.40
537 538 0.826715 GTCTGCTATCAGTCTGGGCA 59.173 55.000 12.76 12.76 41.10 5.36
538 539 0.249238 CGTCTGCTATCAGTCTGGGC 60.249 60.000 0.00 3.52 41.10 5.36
539 540 1.336440 CTCGTCTGCTATCAGTCTGGG 59.664 57.143 0.00 0.00 41.10 4.45
540 541 2.293170 TCTCGTCTGCTATCAGTCTGG 58.707 52.381 0.00 0.00 41.10 3.86
541 542 3.563390 TCATCTCGTCTGCTATCAGTCTG 59.437 47.826 0.00 0.00 41.10 3.51
542 543 3.814625 TCATCTCGTCTGCTATCAGTCT 58.185 45.455 0.00 0.00 41.10 3.24
543 544 4.215185 TGATCATCTCGTCTGCTATCAGTC 59.785 45.833 0.00 0.00 41.10 3.51
544 545 4.140536 TGATCATCTCGTCTGCTATCAGT 58.859 43.478 0.00 0.00 41.10 3.41
545 546 4.762956 TGATCATCTCGTCTGCTATCAG 57.237 45.455 0.00 0.00 41.67 2.90
546 547 6.616017 GTTATGATCATCTCGTCTGCTATCA 58.384 40.000 12.53 0.00 0.00 2.15
547 548 5.736824 CGTTATGATCATCTCGTCTGCTATC 59.263 44.000 12.53 0.00 0.00 2.08
548 549 5.392487 CCGTTATGATCATCTCGTCTGCTAT 60.392 44.000 12.53 0.00 0.00 2.97
549 550 4.083271 CCGTTATGATCATCTCGTCTGCTA 60.083 45.833 12.53 0.00 0.00 3.49
550 551 3.304996 CCGTTATGATCATCTCGTCTGCT 60.305 47.826 12.53 0.00 0.00 4.24
551 552 2.983136 CCGTTATGATCATCTCGTCTGC 59.017 50.000 12.53 0.00 0.00 4.26
552 553 3.977579 CACCGTTATGATCATCTCGTCTG 59.022 47.826 12.53 10.92 0.00 3.51
553 554 3.632604 ACACCGTTATGATCATCTCGTCT 59.367 43.478 12.53 3.33 0.00 4.18
554 555 3.966154 ACACCGTTATGATCATCTCGTC 58.034 45.455 12.53 0.00 0.00 4.20
555 556 3.548214 CGACACCGTTATGATCATCTCGT 60.548 47.826 12.53 1.72 0.00 4.18
556 557 2.973879 CGACACCGTTATGATCATCTCG 59.026 50.000 12.53 16.75 0.00 4.04
557 558 3.004419 TCCGACACCGTTATGATCATCTC 59.996 47.826 12.53 5.76 0.00 2.75
558 559 2.956333 TCCGACACCGTTATGATCATCT 59.044 45.455 12.53 0.00 0.00 2.90
559 560 3.364889 TCCGACACCGTTATGATCATC 57.635 47.619 12.53 0.00 0.00 2.92
560 561 3.611766 CGATCCGACACCGTTATGATCAT 60.612 47.826 13.81 13.81 0.00 2.45
561 562 2.287368 CGATCCGACACCGTTATGATCA 60.287 50.000 0.00 0.00 0.00 2.92
562 563 2.316792 CGATCCGACACCGTTATGATC 58.683 52.381 0.00 0.00 0.00 2.92
563 564 1.000607 CCGATCCGACACCGTTATGAT 60.001 52.381 0.00 0.00 0.00 2.45
564 565 0.382873 CCGATCCGACACCGTTATGA 59.617 55.000 0.00 0.00 0.00 2.15
565 566 1.213094 GCCGATCCGACACCGTTATG 61.213 60.000 0.00 0.00 0.00 1.90
566 567 1.066918 GCCGATCCGACACCGTTAT 59.933 57.895 0.00 0.00 0.00 1.89
567 568 2.491152 GCCGATCCGACACCGTTA 59.509 61.111 0.00 0.00 0.00 3.18
568 569 4.446413 GGCCGATCCGACACCGTT 62.446 66.667 0.00 0.00 0.00 4.44
579 580 2.107950 TTTTGTTGAGATCGGCCGAT 57.892 45.000 39.64 39.64 37.59 4.18
580 581 1.885560 TTTTTGTTGAGATCGGCCGA 58.114 45.000 33.12 33.12 0.00 5.54
596 597 7.817418 TTACTAGTTGATGCACTTCCTTTTT 57.183 32.000 0.00 0.00 0.00 1.94
597 598 8.409358 AATTACTAGTTGATGCACTTCCTTTT 57.591 30.769 0.00 0.00 0.00 2.27
598 599 8.409358 AAATTACTAGTTGATGCACTTCCTTT 57.591 30.769 0.00 0.00 0.00 3.11
599 600 9.167311 CTAAATTACTAGTTGATGCACTTCCTT 57.833 33.333 0.00 0.00 0.00 3.36
600 601 7.770897 CCTAAATTACTAGTTGATGCACTTCCT 59.229 37.037 0.00 0.00 0.00 3.36
601 602 7.553044 ACCTAAATTACTAGTTGATGCACTTCC 59.447 37.037 0.00 0.00 0.00 3.46
602 603 8.494016 ACCTAAATTACTAGTTGATGCACTTC 57.506 34.615 0.00 0.00 0.00 3.01
603 604 8.100791 TGACCTAAATTACTAGTTGATGCACTT 58.899 33.333 0.00 0.00 0.00 3.16
604 605 7.620880 TGACCTAAATTACTAGTTGATGCACT 58.379 34.615 0.00 0.00 0.00 4.40
605 606 7.764443 TCTGACCTAAATTACTAGTTGATGCAC 59.236 37.037 0.00 0.00 0.00 4.57
606 607 7.764443 GTCTGACCTAAATTACTAGTTGATGCA 59.236 37.037 0.00 0.00 0.00 3.96
607 608 7.224949 GGTCTGACCTAAATTACTAGTTGATGC 59.775 40.741 19.53 0.00 34.73 3.91
608 609 8.258007 TGGTCTGACCTAAATTACTAGTTGATG 58.742 37.037 26.03 0.00 39.58 3.07
609 610 8.375493 TGGTCTGACCTAAATTACTAGTTGAT 57.625 34.615 26.03 0.00 39.58 2.57
610 611 7.786046 TGGTCTGACCTAAATTACTAGTTGA 57.214 36.000 26.03 0.00 39.58 3.18
611 612 8.842358 TTTGGTCTGACCTAAATTACTAGTTG 57.158 34.615 26.03 0.00 39.58 3.16
616 617 8.903820 GCATTATTTGGTCTGACCTAAATTACT 58.096 33.333 26.88 15.89 39.58 2.24
617 618 8.682710 TGCATTATTTGGTCTGACCTAAATTAC 58.317 33.333 26.88 17.47 39.58 1.89
618 619 8.682710 GTGCATTATTTGGTCTGACCTAAATTA 58.317 33.333 26.88 22.12 39.58 1.40
619 620 7.547227 GTGCATTATTTGGTCTGACCTAAATT 58.453 34.615 26.88 16.92 39.58 1.82
620 621 6.183360 CGTGCATTATTTGGTCTGACCTAAAT 60.183 38.462 26.03 25.93 39.58 1.40
621 622 5.123186 CGTGCATTATTTGGTCTGACCTAAA 59.877 40.000 26.03 22.20 39.58 1.85
622 623 4.634004 CGTGCATTATTTGGTCTGACCTAA 59.366 41.667 26.03 24.20 39.58 2.69
623 624 4.188462 CGTGCATTATTTGGTCTGACCTA 58.812 43.478 26.03 17.15 39.58 3.08
624 625 3.009723 CGTGCATTATTTGGTCTGACCT 58.990 45.455 26.03 10.10 39.58 3.85
625 626 2.477863 GCGTGCATTATTTGGTCTGACC 60.478 50.000 19.96 19.96 39.22 4.02
626 627 2.477863 GGCGTGCATTATTTGGTCTGAC 60.478 50.000 0.00 0.00 0.00 3.51
627 628 1.742831 GGCGTGCATTATTTGGTCTGA 59.257 47.619 0.00 0.00 0.00 3.27
628 629 1.472082 TGGCGTGCATTATTTGGTCTG 59.528 47.619 0.00 0.00 0.00 3.51
629 630 1.832883 TGGCGTGCATTATTTGGTCT 58.167 45.000 0.00 0.00 0.00 3.85
630 631 2.159254 ACATGGCGTGCATTATTTGGTC 60.159 45.455 6.62 0.00 0.00 4.02
631 632 1.824230 ACATGGCGTGCATTATTTGGT 59.176 42.857 6.62 0.00 0.00 3.67
632 633 2.582728 ACATGGCGTGCATTATTTGG 57.417 45.000 6.62 0.00 0.00 3.28
633 634 4.035558 AGACTACATGGCGTGCATTATTTG 59.964 41.667 6.62 0.00 0.00 2.32
634 635 4.035558 CAGACTACATGGCGTGCATTATTT 59.964 41.667 6.62 0.00 0.00 1.40
635 636 3.561310 CAGACTACATGGCGTGCATTATT 59.439 43.478 6.62 0.00 0.00 1.40
636 637 3.133691 CAGACTACATGGCGTGCATTAT 58.866 45.455 6.62 0.00 0.00 1.28
637 638 2.093711 ACAGACTACATGGCGTGCATTA 60.094 45.455 6.62 0.00 0.00 1.90
638 639 1.339055 ACAGACTACATGGCGTGCATT 60.339 47.619 6.62 0.00 0.00 3.56
639 640 0.250234 ACAGACTACATGGCGTGCAT 59.750 50.000 6.62 0.00 0.00 3.96
640 641 0.670239 CACAGACTACATGGCGTGCA 60.670 55.000 6.62 0.00 0.00 4.57
641 642 1.970917 GCACAGACTACATGGCGTGC 61.971 60.000 6.62 0.00 43.00 5.34
642 643 0.670239 TGCACAGACTACATGGCGTG 60.670 55.000 4.87 4.87 33.50 5.34
643 644 0.670546 GTGCACAGACTACATGGCGT 60.671 55.000 13.17 0.00 0.00 5.68
644 645 1.361668 GGTGCACAGACTACATGGCG 61.362 60.000 20.43 0.00 0.00 5.69
645 646 1.361668 CGGTGCACAGACTACATGGC 61.362 60.000 20.43 0.00 0.00 4.40
646 647 0.246360 TCGGTGCACAGACTACATGG 59.754 55.000 20.43 0.00 0.00 3.66
647 648 1.067565 AGTCGGTGCACAGACTACATG 60.068 52.381 39.75 10.90 46.72 3.21
648 649 1.257743 AGTCGGTGCACAGACTACAT 58.742 50.000 39.75 23.08 46.72 2.29
649 650 1.810755 CTAGTCGGTGCACAGACTACA 59.189 52.381 39.06 28.85 46.72 2.74
650 651 1.811359 ACTAGTCGGTGCACAGACTAC 59.189 52.381 39.06 22.42 46.72 2.73
651 652 2.195741 ACTAGTCGGTGCACAGACTA 57.804 50.000 39.28 39.28 46.72 2.59
653 654 3.505464 AATACTAGTCGGTGCACAGAC 57.495 47.619 34.10 34.10 40.58 3.51
654 655 5.184479 AGTTTAATACTAGTCGGTGCACAGA 59.816 40.000 20.43 18.20 34.56 3.41
655 656 5.408356 AGTTTAATACTAGTCGGTGCACAG 58.592 41.667 20.43 15.76 34.56 3.66
656 657 5.395682 AGTTTAATACTAGTCGGTGCACA 57.604 39.130 20.43 0.00 34.56 4.57
678 679 7.925483 GTCGTTCATTAGGAGTAGAGACTACTA 59.075 40.741 10.76 0.00 45.84 1.82
680 681 6.762661 AGTCGTTCATTAGGAGTAGAGACTAC 59.237 42.308 0.00 0.00 35.45 2.73
708 709 7.865706 AAATTAAACCGCTGAGACTATTCAT 57.134 32.000 0.00 0.00 0.00 2.57
773 779 2.590092 GAGGTTGGGGGATGACGG 59.410 66.667 0.00 0.00 0.00 4.79
785 792 2.486013 GGGTTGTGAGTTAACGGAGGTT 60.486 50.000 0.00 0.00 40.20 3.50
1336 1496 2.412112 GCGGGCTCTACTACACGG 59.588 66.667 0.00 0.00 0.00 4.94
1358 1518 4.214119 CGATTGGTTCTTGTGATGAACTGT 59.786 41.667 0.00 0.00 42.27 3.55
1514 2063 1.905894 TCGTGGTGGATGATTCTTCCA 59.094 47.619 15.40 15.40 40.96 3.53
2039 3442 6.775142 TCAGGGTTATTTTTCAGTCATGTCAA 59.225 34.615 0.00 0.00 0.00 3.18
2169 3572 2.431454 TGCCACTGCGATTAACAATCA 58.569 42.857 0.00 0.00 41.78 2.57
2233 3636 0.393808 TTGACAATTAGCTCCGCCCC 60.394 55.000 0.00 0.00 0.00 5.80
2388 3792 0.322816 GGAGGGATGAAGCAACTGCA 60.323 55.000 4.22 0.00 45.16 4.41
2542 3947 5.994250 TCTAGGCTCAAGCACTAATCAATT 58.006 37.500 4.13 0.00 44.36 2.32
2763 4183 1.055040 AGAACAGCAAGAGGTCAGCT 58.945 50.000 0.00 0.00 39.63 4.24
2869 4291 9.986833 TTAGTCATGAACAATCATTACAAATCG 57.013 29.630 0.00 0.00 43.89 3.34
3259 5205 8.470805 ACTCCAAGTACAGTTGATTATACTCTG 58.529 37.037 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.