Multiple sequence alignment - TraesCS2D01G470300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G470300 chr2D 100.000 2510 0 0 1 2510 574667849 574670358 0.000000e+00 4636.0
1 TraesCS2D01G470300 chr2D 81.715 1493 237 26 647 2127 534746881 534745413 0.000000e+00 1212.0
2 TraesCS2D01G470300 chr2D 74.382 1417 314 38 916 2304 619578089 619579484 6.060000e-156 560.0
3 TraesCS2D01G470300 chr2D 98.969 194 2 0 2317 2510 455997650 455997843 5.140000e-92 348.0
4 TraesCS2D01G470300 chr2D 98.469 196 3 0 2315 2510 366437147 366437342 1.850000e-91 346.0
5 TraesCS2D01G470300 chr1D 89.314 1750 179 8 573 2317 402285134 402283388 0.000000e+00 2189.0
6 TraesCS2D01G470300 chr1D 98.980 196 2 0 2315 2510 79341240 79341045 3.970000e-93 351.0
7 TraesCS2D01G470300 chr1D 99.482 193 1 0 2318 2510 141616750 141616942 3.970000e-93 351.0
8 TraesCS2D01G470300 chr1D 98.964 193 2 0 2318 2510 213266357 213266549 1.850000e-91 346.0
9 TraesCS2D01G470300 chr1D 98.964 193 2 0 2318 2510 268858818 268859010 1.850000e-91 346.0
10 TraesCS2D01G470300 chr7A 90.317 1167 90 11 1154 2317 717598509 717599655 0.000000e+00 1507.0
11 TraesCS2D01G470300 chr7A 78.599 1799 326 53 548 2317 101465701 101463933 0.000000e+00 1134.0
12 TraesCS2D01G470300 chr3D 81.782 1762 278 25 566 2310 465037299 465035564 0.000000e+00 1435.0
13 TraesCS2D01G470300 chr3D 88.952 878 80 10 548 1417 6821564 6822432 0.000000e+00 1068.0
14 TraesCS2D01G470300 chr3D 89.668 784 71 9 1437 2216 6822649 6823426 0.000000e+00 990.0
15 TraesCS2D01G470300 chr5B 82.663 796 123 15 771 1558 641567425 641568213 0.000000e+00 691.0
16 TraesCS2D01G470300 chr1A 76.612 1210 241 32 558 1747 500849359 500850546 1.640000e-176 628.0
17 TraesCS2D01G470300 chr5D 77.663 1061 181 40 558 1582 394143555 394142515 1.660000e-166 595.0
18 TraesCS2D01G470300 chr5D 98.964 193 2 0 2318 2510 58882972 58882780 1.850000e-91 346.0
19 TraesCS2D01G470300 chr5A 78.774 881 169 15 711 1582 531524129 531523258 2.170000e-160 575.0
20 TraesCS2D01G470300 chr1B 77.181 986 192 27 778 1747 676308698 676307730 6.110000e-151 544.0
21 TraesCS2D01G470300 chr3B 79.747 711 131 12 558 1261 729982424 729983128 1.040000e-138 503.0
22 TraesCS2D01G470300 chr2B 92.157 357 19 3 1 350 690972651 690972297 1.730000e-136 496.0
23 TraesCS2D01G470300 chr2B 77.062 885 185 17 1002 1878 549259629 549258755 6.240000e-136 494.0
24 TraesCS2D01G470300 chr2B 94.000 200 11 1 337 535 690969244 690969045 4.060000e-78 302.0
25 TraesCS2D01G470300 chr6D 98.964 193 2 0 2318 2510 243253744 243253552 1.850000e-91 346.0
26 TraesCS2D01G470300 chr4D 98.964 193 2 0 2318 2510 360586407 360586215 1.850000e-91 346.0
27 TraesCS2D01G470300 chr2A 93.333 60 4 0 476 535 713139592 713139651 3.440000e-14 89.8
28 TraesCS2D01G470300 chr3A 89.796 49 5 0 267 315 493795598 493795646 2.080000e-06 63.9
29 TraesCS2D01G470300 chr6B 96.875 32 1 0 129 160 131909531 131909562 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G470300 chr2D 574667849 574670358 2509 False 4636 4636 100.0000 1 2510 1 chr2D.!!$F3 2509
1 TraesCS2D01G470300 chr2D 534745413 534746881 1468 True 1212 1212 81.7150 647 2127 1 chr2D.!!$R1 1480
2 TraesCS2D01G470300 chr2D 619578089 619579484 1395 False 560 560 74.3820 916 2304 1 chr2D.!!$F4 1388
3 TraesCS2D01G470300 chr1D 402283388 402285134 1746 True 2189 2189 89.3140 573 2317 1 chr1D.!!$R2 1744
4 TraesCS2D01G470300 chr7A 717598509 717599655 1146 False 1507 1507 90.3170 1154 2317 1 chr7A.!!$F1 1163
5 TraesCS2D01G470300 chr7A 101463933 101465701 1768 True 1134 1134 78.5990 548 2317 1 chr7A.!!$R1 1769
6 TraesCS2D01G470300 chr3D 465035564 465037299 1735 True 1435 1435 81.7820 566 2310 1 chr3D.!!$R1 1744
7 TraesCS2D01G470300 chr3D 6821564 6823426 1862 False 1029 1068 89.3100 548 2216 2 chr3D.!!$F1 1668
8 TraesCS2D01G470300 chr5B 641567425 641568213 788 False 691 691 82.6630 771 1558 1 chr5B.!!$F1 787
9 TraesCS2D01G470300 chr1A 500849359 500850546 1187 False 628 628 76.6120 558 1747 1 chr1A.!!$F1 1189
10 TraesCS2D01G470300 chr5D 394142515 394143555 1040 True 595 595 77.6630 558 1582 1 chr5D.!!$R2 1024
11 TraesCS2D01G470300 chr5A 531523258 531524129 871 True 575 575 78.7740 711 1582 1 chr5A.!!$R1 871
12 TraesCS2D01G470300 chr1B 676307730 676308698 968 True 544 544 77.1810 778 1747 1 chr1B.!!$R1 969
13 TraesCS2D01G470300 chr3B 729982424 729983128 704 False 503 503 79.7470 558 1261 1 chr3B.!!$F1 703
14 TraesCS2D01G470300 chr2B 549258755 549259629 874 True 494 494 77.0620 1002 1878 1 chr2B.!!$R1 876
15 TraesCS2D01G470300 chr2B 690969045 690972651 3606 True 399 496 93.0785 1 535 2 chr2B.!!$R2 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 507 0.032017 TCTCCCAGGGCTCTAGGTTC 60.032 60.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 5114 0.034337 GTGGGTCCTTGAGTTGCGTA 59.966 55.0 0.0 0.0 0.0 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 45 6.240894 TGCAAGATGATTAGAAAGGACAACT 58.759 36.000 0.00 0.00 0.00 3.16
66 73 6.464222 TGGATACACAAGAACACTCTAAAGG 58.536 40.000 0.00 0.00 46.17 3.11
68 75 4.423625 ACACAAGAACACTCTAAAGGCT 57.576 40.909 0.00 0.00 0.00 4.58
127 134 1.618343 GAAATGGTGTTGTCCAAGGGG 59.382 52.381 0.00 0.00 41.09 4.79
206 214 6.610020 TGGCTAACATCTTAAGCTAACTAGGA 59.390 38.462 0.00 0.00 0.00 2.94
224 232 6.838382 ACTAGGAAGTTACTTTTGTCCACAT 58.162 36.000 0.00 0.00 29.00 3.21
226 234 5.445964 AGGAAGTTACTTTTGTCCACATGT 58.554 37.500 0.00 0.00 0.00 3.21
279 287 6.657117 TGTAAAGCAACCTTTGTATGCATCTA 59.343 34.615 0.19 0.00 41.24 1.98
280 288 6.780457 AAAGCAACCTTTGTATGCATCTAT 57.220 33.333 0.19 0.00 42.45 1.98
282 290 6.140303 AGCAACCTTTGTATGCATCTATTG 57.860 37.500 0.19 1.12 42.45 1.90
317 325 8.821686 AAATACCCAACTCAATCATCAATACA 57.178 30.769 0.00 0.00 0.00 2.29
320 328 7.338800 ACCCAACTCAATCATCAATACAATC 57.661 36.000 0.00 0.00 0.00 2.67
321 329 6.038603 ACCCAACTCAATCATCAATACAATCG 59.961 38.462 0.00 0.00 0.00 3.34
333 341 6.349973 TCAATACAATCGCACTTGATTCTC 57.650 37.500 2.50 0.00 36.46 2.87
346 354 6.622462 GCACTTGATTCTCTCAAACCATTCTC 60.622 42.308 0.00 0.00 43.20 2.87
350 358 5.014544 TGATTCTCTCAAACCATTCTCCCTT 59.985 40.000 0.00 0.00 0.00 3.95
351 359 4.559862 TCTCTCAAACCATTCTCCCTTC 57.440 45.455 0.00 0.00 0.00 3.46
352 360 3.909995 TCTCTCAAACCATTCTCCCTTCA 59.090 43.478 0.00 0.00 0.00 3.02
353 361 4.350816 TCTCTCAAACCATTCTCCCTTCAA 59.649 41.667 0.00 0.00 0.00 2.69
354 362 5.014544 TCTCTCAAACCATTCTCCCTTCAAT 59.985 40.000 0.00 0.00 0.00 2.57
356 364 5.014544 TCTCAAACCATTCTCCCTTCAATCT 59.985 40.000 0.00 0.00 0.00 2.40
357 365 5.256474 TCAAACCATTCTCCCTTCAATCTC 58.744 41.667 0.00 0.00 0.00 2.75
358 366 5.014544 TCAAACCATTCTCCCTTCAATCTCT 59.985 40.000 0.00 0.00 0.00 3.10
361 369 4.290722 ACCATTCTCCCTTCAATCTCTGTT 59.709 41.667 0.00 0.00 0.00 3.16
362 370 5.222213 ACCATTCTCCCTTCAATCTCTGTTT 60.222 40.000 0.00 0.00 0.00 2.83
363 371 5.356470 CCATTCTCCCTTCAATCTCTGTTTC 59.644 44.000 0.00 0.00 0.00 2.78
364 372 5.832539 TTCTCCCTTCAATCTCTGTTTCT 57.167 39.130 0.00 0.00 0.00 2.52
365 373 6.935240 TTCTCCCTTCAATCTCTGTTTCTA 57.065 37.500 0.00 0.00 0.00 2.10
366 374 6.935240 TCTCCCTTCAATCTCTGTTTCTAA 57.065 37.500 0.00 0.00 0.00 2.10
367 375 7.316393 TCTCCCTTCAATCTCTGTTTCTAAA 57.684 36.000 0.00 0.00 0.00 1.85
368 376 7.390027 TCTCCCTTCAATCTCTGTTTCTAAAG 58.610 38.462 0.00 0.00 0.00 1.85
369 377 7.235606 TCTCCCTTCAATCTCTGTTTCTAAAGA 59.764 37.037 0.00 0.00 0.00 2.52
370 378 7.162082 TCCCTTCAATCTCTGTTTCTAAAGAC 58.838 38.462 0.00 0.00 0.00 3.01
371 379 7.016661 TCCCTTCAATCTCTGTTTCTAAAGACT 59.983 37.037 0.00 0.00 0.00 3.24
372 380 7.663493 CCCTTCAATCTCTGTTTCTAAAGACTT 59.337 37.037 0.00 0.00 0.00 3.01
373 381 8.716909 CCTTCAATCTCTGTTTCTAAAGACTTC 58.283 37.037 0.00 0.00 0.00 3.01
374 382 9.487790 CTTCAATCTCTGTTTCTAAAGACTTCT 57.512 33.333 0.00 0.00 0.00 2.85
375 383 8.824159 TCAATCTCTGTTTCTAAAGACTTCTG 57.176 34.615 0.00 0.00 0.00 3.02
376 384 8.424918 TCAATCTCTGTTTCTAAAGACTTCTGT 58.575 33.333 0.00 0.00 0.00 3.41
377 385 8.707839 CAATCTCTGTTTCTAAAGACTTCTGTC 58.292 37.037 0.00 0.00 43.22 3.51
378 386 6.750148 TCTCTGTTTCTAAAGACTTCTGTCC 58.250 40.000 0.00 0.00 43.91 4.02
379 387 5.529791 TCTGTTTCTAAAGACTTCTGTCCG 58.470 41.667 0.00 0.00 43.91 4.79
380 388 5.068723 TCTGTTTCTAAAGACTTCTGTCCGT 59.931 40.000 0.00 0.00 43.91 4.69
381 389 6.263842 TCTGTTTCTAAAGACTTCTGTCCGTA 59.736 38.462 0.00 0.00 43.91 4.02
382 390 6.444633 TGTTTCTAAAGACTTCTGTCCGTAG 58.555 40.000 0.00 0.00 43.91 3.51
400 408 4.278956 GGCGTCATCACGTCCTTT 57.721 55.556 0.00 0.00 45.32 3.11
401 409 1.787847 GGCGTCATCACGTCCTTTG 59.212 57.895 0.00 0.00 45.32 2.77
402 410 0.669318 GGCGTCATCACGTCCTTTGA 60.669 55.000 0.00 0.00 45.32 2.69
403 411 2.848998 GGCGTCATCACGTCCTTTGAC 61.849 57.143 0.00 0.00 45.32 3.18
404 412 1.778334 CGTCATCACGTCCTTTGACA 58.222 50.000 13.74 0.00 41.85 3.58
405 413 1.455786 CGTCATCACGTCCTTTGACAC 59.544 52.381 13.74 0.00 41.85 3.67
406 414 1.798813 GTCATCACGTCCTTTGACACC 59.201 52.381 10.26 0.00 41.85 4.16
407 415 0.790207 CATCACGTCCTTTGACACCG 59.210 55.000 0.00 0.00 41.85 4.94
408 416 0.391597 ATCACGTCCTTTGACACCGT 59.608 50.000 0.00 0.00 41.85 4.83
409 417 1.031235 TCACGTCCTTTGACACCGTA 58.969 50.000 0.00 0.00 41.85 4.02
410 418 1.614903 TCACGTCCTTTGACACCGTAT 59.385 47.619 0.00 0.00 41.85 3.06
411 419 2.819019 TCACGTCCTTTGACACCGTATA 59.181 45.455 0.00 0.00 41.85 1.47
412 420 3.444742 TCACGTCCTTTGACACCGTATAT 59.555 43.478 0.00 0.00 41.85 0.86
413 421 3.550275 CACGTCCTTTGACACCGTATATG 59.450 47.826 0.00 0.00 41.85 1.78
414 422 2.538449 CGTCCTTTGACACCGTATATGC 59.462 50.000 0.00 0.00 41.85 3.14
415 423 2.538449 GTCCTTTGACACCGTATATGCG 59.462 50.000 6.19 6.19 41.37 4.73
416 424 1.260561 CCTTTGACACCGTATATGCGC 59.739 52.381 7.78 0.00 0.00 6.09
417 425 0.924777 TTTGACACCGTATATGCGCG 59.075 50.000 7.78 0.00 0.00 6.86
418 426 0.100861 TTGACACCGTATATGCGCGA 59.899 50.000 12.10 0.00 0.00 5.87
419 427 0.317519 TGACACCGTATATGCGCGAG 60.318 55.000 12.10 2.33 0.00 5.03
437 445 4.180496 CTCGGTCAACGGGTAAGC 57.820 61.111 0.00 0.00 44.45 3.09
438 446 1.804326 CTCGGTCAACGGGTAAGCG 60.804 63.158 0.00 0.00 44.45 4.68
439 447 2.048877 CGGTCAACGGGTAAGCGT 60.049 61.111 0.00 0.00 39.42 5.07
440 448 2.377310 CGGTCAACGGGTAAGCGTG 61.377 63.158 0.00 0.00 39.42 5.34
441 449 1.301165 GGTCAACGGGTAAGCGTGT 60.301 57.895 0.00 0.00 0.00 4.49
442 450 1.287041 GGTCAACGGGTAAGCGTGTC 61.287 60.000 0.00 0.00 0.00 3.67
443 451 1.005867 TCAACGGGTAAGCGTGTCC 60.006 57.895 0.00 0.00 0.00 4.02
444 452 2.030958 CAACGGGTAAGCGTGTCCC 61.031 63.158 5.04 5.04 37.98 4.46
445 453 2.212110 AACGGGTAAGCGTGTCCCT 61.212 57.895 11.41 0.00 39.10 4.20
446 454 0.899717 AACGGGTAAGCGTGTCCCTA 60.900 55.000 11.41 0.00 39.10 3.53
447 455 0.685458 ACGGGTAAGCGTGTCCCTAT 60.685 55.000 11.41 0.05 39.10 2.57
448 456 0.462789 CGGGTAAGCGTGTCCCTATT 59.537 55.000 11.41 0.00 39.10 1.73
449 457 1.805120 CGGGTAAGCGTGTCCCTATTG 60.805 57.143 11.41 0.00 39.10 1.90
450 458 1.483415 GGGTAAGCGTGTCCCTATTGA 59.517 52.381 7.30 0.00 38.29 2.57
451 459 2.547826 GGTAAGCGTGTCCCTATTGAC 58.452 52.381 0.00 0.00 35.77 3.18
452 460 2.190981 GTAAGCGTGTCCCTATTGACG 58.809 52.381 0.00 0.00 38.11 4.35
453 461 0.606604 AAGCGTGTCCCTATTGACGT 59.393 50.000 0.00 0.00 38.11 4.34
454 462 0.108804 AGCGTGTCCCTATTGACGTG 60.109 55.000 0.00 0.00 38.11 4.49
455 463 1.082117 GCGTGTCCCTATTGACGTGG 61.082 60.000 0.00 0.00 38.11 4.94
456 464 1.082117 CGTGTCCCTATTGACGTGGC 61.082 60.000 0.00 0.00 38.11 5.01
457 465 0.036765 GTGTCCCTATTGACGTGGCA 60.037 55.000 0.00 0.00 38.11 4.92
458 466 0.249120 TGTCCCTATTGACGTGGCAG 59.751 55.000 0.00 0.00 38.11 4.85
459 467 1.090052 GTCCCTATTGACGTGGCAGC 61.090 60.000 0.00 0.00 0.00 5.25
460 468 1.078497 CCCTATTGACGTGGCAGCA 60.078 57.895 0.00 0.00 0.00 4.41
461 469 0.464373 CCCTATTGACGTGGCAGCAT 60.464 55.000 0.00 0.00 0.00 3.79
462 470 1.202639 CCCTATTGACGTGGCAGCATA 60.203 52.381 0.00 0.00 0.00 3.14
463 471 1.867233 CCTATTGACGTGGCAGCATAC 59.133 52.381 0.00 0.00 0.00 2.39
464 472 2.549926 CTATTGACGTGGCAGCATACA 58.450 47.619 0.00 0.00 0.00 2.29
465 473 1.819928 ATTGACGTGGCAGCATACAA 58.180 45.000 0.00 0.00 0.00 2.41
466 474 0.871722 TTGACGTGGCAGCATACAAC 59.128 50.000 0.00 0.00 0.00 3.32
467 475 0.250081 TGACGTGGCAGCATACAACA 60.250 50.000 0.00 0.00 0.00 3.33
468 476 1.086696 GACGTGGCAGCATACAACAT 58.913 50.000 0.00 0.00 0.00 2.71
469 477 1.062587 GACGTGGCAGCATACAACATC 59.937 52.381 0.00 0.00 0.00 3.06
470 478 1.085893 CGTGGCAGCATACAACATCA 58.914 50.000 0.00 0.00 0.00 3.07
471 479 1.468127 CGTGGCAGCATACAACATCAA 59.532 47.619 0.00 0.00 0.00 2.57
472 480 2.476686 CGTGGCAGCATACAACATCAAG 60.477 50.000 0.00 0.00 0.00 3.02
473 481 2.489329 GTGGCAGCATACAACATCAAGT 59.511 45.455 0.00 0.00 0.00 3.16
474 482 3.689161 GTGGCAGCATACAACATCAAGTA 59.311 43.478 0.00 0.00 0.00 2.24
475 483 4.155826 GTGGCAGCATACAACATCAAGTAA 59.844 41.667 0.00 0.00 0.00 2.24
476 484 4.949238 TGGCAGCATACAACATCAAGTAAT 59.051 37.500 0.00 0.00 0.00 1.89
477 485 5.163632 TGGCAGCATACAACATCAAGTAATG 60.164 40.000 0.00 0.00 0.00 1.90
478 486 4.736793 GCAGCATACAACATCAAGTAATGC 59.263 41.667 0.00 0.00 39.44 3.56
479 487 4.965762 CAGCATACAACATCAAGTAATGCG 59.034 41.667 0.00 0.00 41.83 4.73
480 488 4.635765 AGCATACAACATCAAGTAATGCGT 59.364 37.500 0.00 0.00 41.83 5.24
481 489 4.963953 GCATACAACATCAAGTAATGCGTC 59.036 41.667 0.00 0.00 33.88 5.19
482 490 5.220662 GCATACAACATCAAGTAATGCGTCT 60.221 40.000 0.00 0.00 33.88 4.18
483 491 4.928661 ACAACATCAAGTAATGCGTCTC 57.071 40.909 0.00 0.00 0.00 3.36
484 492 3.684788 ACAACATCAAGTAATGCGTCTCC 59.315 43.478 0.00 0.00 0.00 3.71
485 493 2.906354 ACATCAAGTAATGCGTCTCCC 58.094 47.619 0.00 0.00 0.00 4.30
486 494 2.236146 ACATCAAGTAATGCGTCTCCCA 59.764 45.455 0.00 0.00 0.00 4.37
487 495 2.672961 TCAAGTAATGCGTCTCCCAG 57.327 50.000 0.00 0.00 0.00 4.45
488 496 1.207089 TCAAGTAATGCGTCTCCCAGG 59.793 52.381 0.00 0.00 0.00 4.45
489 497 0.541863 AAGTAATGCGTCTCCCAGGG 59.458 55.000 0.00 0.00 0.00 4.45
490 498 1.523938 GTAATGCGTCTCCCAGGGC 60.524 63.158 0.00 0.00 0.00 5.19
491 499 1.689233 TAATGCGTCTCCCAGGGCT 60.689 57.895 0.00 0.00 0.00 5.19
492 500 1.686325 TAATGCGTCTCCCAGGGCTC 61.686 60.000 0.00 0.00 0.00 4.70
493 501 3.991924 ATGCGTCTCCCAGGGCTCT 62.992 63.158 0.00 0.00 0.00 4.09
494 502 2.442272 GCGTCTCCCAGGGCTCTA 60.442 66.667 0.00 0.00 0.00 2.43
495 503 2.494530 GCGTCTCCCAGGGCTCTAG 61.495 68.421 0.00 0.00 0.00 2.43
496 504 1.830408 CGTCTCCCAGGGCTCTAGG 60.830 68.421 0.00 0.00 0.00 3.02
497 505 1.311747 GTCTCCCAGGGCTCTAGGT 59.688 63.158 0.00 0.00 0.00 3.08
498 506 0.325765 GTCTCCCAGGGCTCTAGGTT 60.326 60.000 0.00 0.00 0.00 3.50
499 507 0.032017 TCTCCCAGGGCTCTAGGTTC 60.032 60.000 0.00 0.00 0.00 3.62
500 508 1.003051 TCCCAGGGCTCTAGGTTCC 59.997 63.158 0.00 0.00 0.00 3.62
501 509 1.306997 CCCAGGGCTCTAGGTTCCA 60.307 63.158 0.00 0.00 0.00 3.53
502 510 0.695803 CCCAGGGCTCTAGGTTCCAT 60.696 60.000 0.00 0.00 0.00 3.41
503 511 1.216990 CCAGGGCTCTAGGTTCCATT 58.783 55.000 0.00 0.00 0.00 3.16
504 512 1.566231 CCAGGGCTCTAGGTTCCATTT 59.434 52.381 0.00 0.00 0.00 2.32
505 513 2.422093 CCAGGGCTCTAGGTTCCATTTC 60.422 54.545 0.00 0.00 0.00 2.17
506 514 2.507471 CAGGGCTCTAGGTTCCATTTCT 59.493 50.000 0.00 0.00 0.00 2.52
507 515 2.507471 AGGGCTCTAGGTTCCATTTCTG 59.493 50.000 0.00 0.00 0.00 3.02
508 516 2.422093 GGGCTCTAGGTTCCATTTCTGG 60.422 54.545 0.00 0.00 44.64 3.86
509 517 2.422093 GGCTCTAGGTTCCATTTCTGGG 60.422 54.545 0.00 0.00 43.34 4.45
510 518 2.239907 GCTCTAGGTTCCATTTCTGGGT 59.760 50.000 0.00 0.00 43.34 4.51
511 519 3.454812 GCTCTAGGTTCCATTTCTGGGTA 59.545 47.826 0.00 0.00 43.34 3.69
512 520 4.103311 GCTCTAGGTTCCATTTCTGGGTAT 59.897 45.833 0.00 0.00 43.34 2.73
513 521 5.307196 GCTCTAGGTTCCATTTCTGGGTATA 59.693 44.000 0.00 0.00 43.34 1.47
514 522 6.741801 GCTCTAGGTTCCATTTCTGGGTATAC 60.742 46.154 0.00 0.00 43.34 1.47
515 523 6.449956 TCTAGGTTCCATTTCTGGGTATACT 58.550 40.000 2.25 0.00 43.34 2.12
516 524 6.906901 TCTAGGTTCCATTTCTGGGTATACTT 59.093 38.462 2.25 0.00 43.34 2.24
517 525 6.402981 AGGTTCCATTTCTGGGTATACTTT 57.597 37.500 2.25 0.00 43.34 2.66
518 526 6.424032 AGGTTCCATTTCTGGGTATACTTTC 58.576 40.000 2.25 0.00 43.34 2.62
519 527 5.593095 GGTTCCATTTCTGGGTATACTTTCC 59.407 44.000 2.25 0.00 43.34 3.13
520 528 6.424032 GTTCCATTTCTGGGTATACTTTCCT 58.576 40.000 2.25 0.00 43.34 3.36
521 529 7.366191 GGTTCCATTTCTGGGTATACTTTCCTA 60.366 40.741 2.25 0.00 43.34 2.94
522 530 7.758820 TCCATTTCTGGGTATACTTTCCTAA 57.241 36.000 2.25 0.00 43.34 2.69
523 531 7.802117 TCCATTTCTGGGTATACTTTCCTAAG 58.198 38.462 2.25 0.00 43.34 2.18
524 532 7.404980 TCCATTTCTGGGTATACTTTCCTAAGT 59.595 37.037 2.25 0.00 43.75 2.24
525 533 7.499232 CCATTTCTGGGTATACTTTCCTAAGTG 59.501 40.741 2.25 3.00 40.65 3.16
526 534 7.563724 TTTCTGGGTATACTTTCCTAAGTGT 57.436 36.000 2.25 0.00 44.22 3.55
527 535 6.540438 TCTGGGTATACTTTCCTAAGTGTG 57.460 41.667 2.25 0.00 44.22 3.82
528 536 6.021030 TCTGGGTATACTTTCCTAAGTGTGT 58.979 40.000 2.25 0.00 44.22 3.72
529 537 6.154021 TCTGGGTATACTTTCCTAAGTGTGTC 59.846 42.308 2.25 0.00 44.22 3.67
530 538 6.021030 TGGGTATACTTTCCTAAGTGTGTCT 58.979 40.000 2.25 0.00 44.22 3.41
531 539 7.184161 TGGGTATACTTTCCTAAGTGTGTCTA 58.816 38.462 2.25 0.00 44.22 2.59
532 540 7.675195 TGGGTATACTTTCCTAAGTGTGTCTAA 59.325 37.037 2.25 0.00 44.22 2.10
533 541 8.534496 GGGTATACTTTCCTAAGTGTGTCTAAA 58.466 37.037 2.25 0.00 44.22 1.85
537 545 9.877178 ATACTTTCCTAAGTGTGTCTAAATGAG 57.123 33.333 0.00 0.00 44.22 2.90
538 546 6.651225 ACTTTCCTAAGTGTGTCTAAATGAGC 59.349 38.462 0.00 0.00 42.91 4.26
539 547 4.744570 TCCTAAGTGTGTCTAAATGAGCG 58.255 43.478 0.00 0.00 0.00 5.03
540 548 4.461431 TCCTAAGTGTGTCTAAATGAGCGA 59.539 41.667 0.00 0.00 0.00 4.93
541 549 5.047590 TCCTAAGTGTGTCTAAATGAGCGAA 60.048 40.000 0.00 0.00 0.00 4.70
542 550 4.992381 AAGTGTGTCTAAATGAGCGAAC 57.008 40.909 0.00 0.00 0.00 3.95
543 551 2.987149 AGTGTGTCTAAATGAGCGAACG 59.013 45.455 0.00 0.00 0.00 3.95
544 552 2.092211 GTGTGTCTAAATGAGCGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
545 553 1.659098 GTGTCTAAATGAGCGAACGGG 59.341 52.381 0.00 0.00 0.00 5.28
546 554 1.274167 TGTCTAAATGAGCGAACGGGT 59.726 47.619 0.00 0.00 0.00 5.28
658 666 1.149288 TGAGGGTTCTCAGGTACCACT 59.851 52.381 15.94 0.00 44.39 4.00
795 803 1.227853 GTTCCCCTGTCACGTTGCT 60.228 57.895 0.00 0.00 0.00 3.91
905 914 0.949397 GGGGATTAAATTCGGGCGAC 59.051 55.000 0.00 0.00 0.00 5.19
906 915 0.584876 GGGATTAAATTCGGGCGACG 59.415 55.000 0.00 0.00 46.11 5.12
1011 1024 2.307768 GTGACGGAGATGGTGGAGATA 58.692 52.381 0.00 0.00 0.00 1.98
1048 1061 0.690762 GAGGTTTGCAGGTAGGGACA 59.309 55.000 0.00 0.00 0.00 4.02
1082 1766 3.431486 GCCCGTCTGAGAGAGATTGAATT 60.431 47.826 0.00 0.00 31.63 2.17
1378 3712 2.969238 CCATGGCTCCGATCGTGC 60.969 66.667 15.09 16.92 0.00 5.34
1399 3733 2.995574 ACGAGGACCCGGTGGAAG 60.996 66.667 0.00 0.00 34.81 3.46
1624 4166 2.754552 GCTGTCCCATGCTTGATTACAA 59.245 45.455 0.22 0.00 34.65 2.41
1795 4341 7.115378 GGCAGAGTGTTAAAATTTTGACAGATG 59.885 37.037 24.12 21.56 37.34 2.90
2131 4832 0.452585 GGAGAGACGAGGGAGAAACG 59.547 60.000 0.00 0.00 0.00 3.60
2172 4873 1.760029 GGAAAAGTTGGCAAGTTGGGA 59.240 47.619 20.29 0.00 0.00 4.37
2228 4931 1.213296 GGTGGCCCATAAGAAGGAGA 58.787 55.000 0.00 0.00 0.00 3.71
2304 5007 0.328258 CCTCCACCTACCAAACCCTG 59.672 60.000 0.00 0.00 0.00 4.45
2318 5021 2.669569 CCTGACAAGGGCACGGTG 60.670 66.667 3.15 3.15 40.27 4.94
2319 5022 2.111043 CTGACAAGGGCACGGTGT 59.889 61.111 10.24 0.00 0.00 4.16
2320 5023 1.369692 CTGACAAGGGCACGGTGTA 59.630 57.895 10.24 0.00 0.00 2.90
2321 5024 0.250124 CTGACAAGGGCACGGTGTAA 60.250 55.000 10.24 0.00 0.00 2.41
2322 5025 0.533308 TGACAAGGGCACGGTGTAAC 60.533 55.000 10.24 0.77 0.00 2.50
2323 5026 0.533308 GACAAGGGCACGGTGTAACA 60.533 55.000 10.24 0.00 39.98 2.41
2324 5027 0.109723 ACAAGGGCACGGTGTAACAT 59.890 50.000 10.24 0.00 39.98 2.71
2325 5028 0.802494 CAAGGGCACGGTGTAACATC 59.198 55.000 10.24 0.00 39.98 3.06
2326 5029 0.322187 AAGGGCACGGTGTAACATCC 60.322 55.000 10.24 0.84 39.98 3.51
2327 5030 1.747745 GGGCACGGTGTAACATCCC 60.748 63.158 10.24 6.74 39.98 3.85
2328 5031 1.003112 GGCACGGTGTAACATCCCA 60.003 57.895 10.24 0.00 39.98 4.37
2329 5032 0.606944 GGCACGGTGTAACATCCCAA 60.607 55.000 10.24 0.00 39.98 4.12
2330 5033 1.240256 GCACGGTGTAACATCCCAAA 58.760 50.000 10.24 0.00 39.98 3.28
2331 5034 1.816224 GCACGGTGTAACATCCCAAAT 59.184 47.619 10.24 0.00 39.98 2.32
2332 5035 2.230266 GCACGGTGTAACATCCCAAATT 59.770 45.455 10.24 0.00 39.98 1.82
2333 5036 3.305744 GCACGGTGTAACATCCCAAATTT 60.306 43.478 10.24 0.00 39.98 1.82
2334 5037 4.797933 GCACGGTGTAACATCCCAAATTTT 60.798 41.667 10.24 0.00 39.98 1.82
2335 5038 4.920927 CACGGTGTAACATCCCAAATTTTC 59.079 41.667 0.00 0.00 39.98 2.29
2336 5039 4.585162 ACGGTGTAACATCCCAAATTTTCA 59.415 37.500 0.00 0.00 39.98 2.69
2337 5040 5.069251 ACGGTGTAACATCCCAAATTTTCAA 59.931 36.000 0.00 0.00 39.98 2.69
2338 5041 6.162777 CGGTGTAACATCCCAAATTTTCAAT 58.837 36.000 0.00 0.00 39.98 2.57
2339 5042 6.648725 CGGTGTAACATCCCAAATTTTCAATT 59.351 34.615 0.00 0.00 39.98 2.32
2340 5043 7.172361 CGGTGTAACATCCCAAATTTTCAATTT 59.828 33.333 0.00 0.00 39.98 1.82
2341 5044 8.288913 GGTGTAACATCCCAAATTTTCAATTTG 58.711 33.333 12.97 12.97 39.98 2.32
2342 5045 8.288913 GTGTAACATCCCAAATTTTCAATTTGG 58.711 33.333 25.00 25.00 45.86 3.28
2397 5100 9.327529 ACATATTTTATTGCATTTTGTTTTGCG 57.672 25.926 0.00 0.00 41.80 4.85
2398 5101 9.539139 CATATTTTATTGCATTTTGTTTTGCGA 57.461 25.926 0.00 0.00 41.80 5.10
2400 5103 8.658171 ATTTTATTGCATTTTGTTTTGCGATC 57.342 26.923 1.10 0.00 41.10 3.69
2401 5104 4.666928 ATTGCATTTTGTTTTGCGATCC 57.333 36.364 0.00 0.00 38.32 3.36
2402 5105 3.383620 TGCATTTTGTTTTGCGATCCT 57.616 38.095 0.00 0.00 41.80 3.24
2403 5106 4.511617 TGCATTTTGTTTTGCGATCCTA 57.488 36.364 0.00 0.00 41.80 2.94
2404 5107 4.484236 TGCATTTTGTTTTGCGATCCTAG 58.516 39.130 0.00 0.00 41.80 3.02
2405 5108 4.217334 TGCATTTTGTTTTGCGATCCTAGA 59.783 37.500 0.00 0.00 41.80 2.43
2406 5109 5.160641 GCATTTTGTTTTGCGATCCTAGAA 58.839 37.500 0.00 0.00 0.00 2.10
2407 5110 5.633182 GCATTTTGTTTTGCGATCCTAGAAA 59.367 36.000 0.00 0.00 0.00 2.52
2408 5111 6.311200 GCATTTTGTTTTGCGATCCTAGAAAT 59.689 34.615 0.00 0.00 0.00 2.17
2409 5112 7.148590 GCATTTTGTTTTGCGATCCTAGAAATT 60.149 33.333 0.00 0.00 0.00 1.82
2410 5113 7.867445 TTTTGTTTTGCGATCCTAGAAATTC 57.133 32.000 0.00 0.00 0.00 2.17
2411 5114 6.817765 TTGTTTTGCGATCCTAGAAATTCT 57.182 33.333 0.00 0.00 0.00 2.40
2412 5115 7.915293 TTGTTTTGCGATCCTAGAAATTCTA 57.085 32.000 2.44 2.44 0.00 2.10
2413 5116 7.303634 TGTTTTGCGATCCTAGAAATTCTAC 57.696 36.000 0.00 0.00 0.00 2.59
2414 5117 6.035650 TGTTTTGCGATCCTAGAAATTCTACG 59.964 38.462 0.00 2.84 0.00 3.51
2415 5118 3.639538 TGCGATCCTAGAAATTCTACGC 58.360 45.455 21.17 21.17 39.58 4.42
2416 5119 3.067601 TGCGATCCTAGAAATTCTACGCA 59.932 43.478 24.55 24.55 43.52 5.24
2417 5120 4.049186 GCGATCCTAGAAATTCTACGCAA 58.951 43.478 22.30 0.00 39.21 4.85
2418 5121 4.085004 GCGATCCTAGAAATTCTACGCAAC 60.085 45.833 22.30 5.60 39.21 4.17
2419 5122 5.282510 CGATCCTAGAAATTCTACGCAACT 58.717 41.667 0.00 0.00 0.00 3.16
2420 5123 5.399892 CGATCCTAGAAATTCTACGCAACTC 59.600 44.000 0.00 0.00 0.00 3.01
2421 5124 5.654603 TCCTAGAAATTCTACGCAACTCA 57.345 39.130 0.00 0.00 0.00 3.41
2422 5125 6.032956 TCCTAGAAATTCTACGCAACTCAA 57.967 37.500 0.00 0.00 0.00 3.02
2423 5126 6.100004 TCCTAGAAATTCTACGCAACTCAAG 58.900 40.000 0.00 0.00 0.00 3.02
2424 5127 5.292101 CCTAGAAATTCTACGCAACTCAAGG 59.708 44.000 0.00 0.00 0.00 3.61
2425 5128 4.894784 AGAAATTCTACGCAACTCAAGGA 58.105 39.130 0.00 0.00 0.00 3.36
2426 5129 4.691216 AGAAATTCTACGCAACTCAAGGAC 59.309 41.667 0.00 0.00 0.00 3.85
2427 5130 2.450609 TTCTACGCAACTCAAGGACC 57.549 50.000 0.00 0.00 0.00 4.46
2428 5131 0.606604 TCTACGCAACTCAAGGACCC 59.393 55.000 0.00 0.00 0.00 4.46
2429 5132 0.320374 CTACGCAACTCAAGGACCCA 59.680 55.000 0.00 0.00 0.00 4.51
2430 5133 0.034337 TACGCAACTCAAGGACCCAC 59.966 55.000 0.00 0.00 0.00 4.61
2431 5134 2.317609 CGCAACTCAAGGACCCACG 61.318 63.158 0.00 0.00 0.00 4.94
2432 5135 1.966451 GCAACTCAAGGACCCACGG 60.966 63.158 0.00 0.00 0.00 4.94
2433 5136 1.752198 CAACTCAAGGACCCACGGA 59.248 57.895 0.00 0.00 0.00 4.69
2434 5137 0.320771 CAACTCAAGGACCCACGGAG 60.321 60.000 0.00 0.00 0.00 4.63
2435 5138 0.471211 AACTCAAGGACCCACGGAGA 60.471 55.000 6.37 0.00 0.00 3.71
2436 5139 0.900647 ACTCAAGGACCCACGGAGAG 60.901 60.000 6.37 0.00 0.00 3.20
2437 5140 0.612174 CTCAAGGACCCACGGAGAGA 60.612 60.000 0.00 0.00 0.00 3.10
2438 5141 0.612174 TCAAGGACCCACGGAGAGAG 60.612 60.000 0.00 0.00 0.00 3.20
2439 5142 0.900647 CAAGGACCCACGGAGAGAGT 60.901 60.000 0.00 0.00 0.00 3.24
2440 5143 0.178929 AAGGACCCACGGAGAGAGTT 60.179 55.000 0.00 0.00 0.00 3.01
2441 5144 0.900647 AGGACCCACGGAGAGAGTTG 60.901 60.000 0.00 0.00 0.00 3.16
2442 5145 1.592223 GACCCACGGAGAGAGTTGG 59.408 63.158 0.00 0.00 0.00 3.77
2443 5146 1.889530 GACCCACGGAGAGAGTTGGG 61.890 65.000 3.87 3.87 42.05 4.12
2444 5147 2.660064 CCCACGGAGAGAGTTGGGG 61.660 68.421 0.00 0.00 33.17 4.96
2445 5148 1.609501 CCACGGAGAGAGTTGGGGA 60.610 63.158 0.00 0.00 0.00 4.81
2446 5149 0.978146 CCACGGAGAGAGTTGGGGAT 60.978 60.000 0.00 0.00 0.00 3.85
2447 5150 0.905357 CACGGAGAGAGTTGGGGATT 59.095 55.000 0.00 0.00 0.00 3.01
2448 5151 1.279271 CACGGAGAGAGTTGGGGATTT 59.721 52.381 0.00 0.00 0.00 2.17
2449 5152 1.555533 ACGGAGAGAGTTGGGGATTTC 59.444 52.381 0.00 0.00 0.00 2.17
2450 5153 1.471676 CGGAGAGAGTTGGGGATTTCG 60.472 57.143 0.00 0.00 0.00 3.46
2451 5154 1.555533 GGAGAGAGTTGGGGATTTCGT 59.444 52.381 0.00 0.00 0.00 3.85
2452 5155 2.027100 GGAGAGAGTTGGGGATTTCGTT 60.027 50.000 0.00 0.00 0.00 3.85
2453 5156 3.197116 GGAGAGAGTTGGGGATTTCGTTA 59.803 47.826 0.00 0.00 0.00 3.18
2454 5157 4.141688 GGAGAGAGTTGGGGATTTCGTTAT 60.142 45.833 0.00 0.00 0.00 1.89
2455 5158 5.429130 GAGAGAGTTGGGGATTTCGTTATT 58.571 41.667 0.00 0.00 0.00 1.40
2456 5159 5.816682 AGAGAGTTGGGGATTTCGTTATTT 58.183 37.500 0.00 0.00 0.00 1.40
2457 5160 6.246163 AGAGAGTTGGGGATTTCGTTATTTT 58.754 36.000 0.00 0.00 0.00 1.82
2458 5161 6.374613 AGAGAGTTGGGGATTTCGTTATTTTC 59.625 38.462 0.00 0.00 0.00 2.29
2459 5162 6.007703 AGAGTTGGGGATTTCGTTATTTTCA 58.992 36.000 0.00 0.00 0.00 2.69
2460 5163 6.663523 AGAGTTGGGGATTTCGTTATTTTCAT 59.336 34.615 0.00 0.00 0.00 2.57
2461 5164 7.832187 AGAGTTGGGGATTTCGTTATTTTCATA 59.168 33.333 0.00 0.00 0.00 2.15
2462 5165 8.533569 AGTTGGGGATTTCGTTATTTTCATAT 57.466 30.769 0.00 0.00 0.00 1.78
2463 5166 8.977412 AGTTGGGGATTTCGTTATTTTCATATT 58.023 29.630 0.00 0.00 0.00 1.28
2464 5167 9.594478 GTTGGGGATTTCGTTATTTTCATATTT 57.406 29.630 0.00 0.00 0.00 1.40
2465 5168 9.593134 TTGGGGATTTCGTTATTTTCATATTTG 57.407 29.630 0.00 0.00 0.00 2.32
2466 5169 8.200792 TGGGGATTTCGTTATTTTCATATTTGG 58.799 33.333 0.00 0.00 0.00 3.28
2467 5170 7.655732 GGGGATTTCGTTATTTTCATATTTGGG 59.344 37.037 0.00 0.00 0.00 4.12
2468 5171 8.201464 GGGATTTCGTTATTTTCATATTTGGGT 58.799 33.333 0.00 0.00 0.00 4.51
2469 5172 9.594478 GGATTTCGTTATTTTCATATTTGGGTT 57.406 29.630 0.00 0.00 0.00 4.11
2474 5177 9.849166 TCGTTATTTTCATATTTGGGTTTTCTC 57.151 29.630 0.00 0.00 0.00 2.87
2475 5178 9.632807 CGTTATTTTCATATTTGGGTTTTCTCA 57.367 29.630 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 34 5.705441 TGTGTATCCATGAAGTTGTCCTTTC 59.295 40.000 0.00 0.00 32.03 2.62
38 45 6.114187 AGAGTGTTCTTGTGTATCCATGAA 57.886 37.500 0.00 0.00 0.00 2.57
64 71 2.042464 TCGGATCTTCTTGCATAGCCT 58.958 47.619 0.00 0.00 0.00 4.58
66 73 3.722147 TCTTCGGATCTTCTTGCATAGC 58.278 45.455 0.00 0.00 0.00 2.97
68 75 8.585018 TGTATAATCTTCGGATCTTCTTGCATA 58.415 33.333 0.00 0.00 32.82 3.14
187 195 9.257428 AGTAACTTCCTAGTTAGCTTAAGATGT 57.743 33.333 6.67 0.00 45.12 3.06
206 214 5.348164 GCAACATGTGGACAAAAGTAACTT 58.652 37.500 3.77 0.00 0.00 2.66
224 232 1.600636 CTCTCAAAGGGGCGCAACA 60.601 57.895 10.83 0.00 0.00 3.33
226 234 2.034066 CCTCTCAAAGGGGCGCAA 59.966 61.111 10.83 0.00 42.03 4.85
280 288 6.160636 TGAGTTGGGTATTTATATGTCCCCAA 59.839 38.462 3.89 3.89 46.95 4.12
282 290 6.195600 TGAGTTGGGTATTTATATGTCCCC 57.804 41.667 0.00 0.00 37.52 4.81
333 341 5.259632 AGATTGAAGGGAGAATGGTTTGAG 58.740 41.667 0.00 0.00 0.00 3.02
346 354 7.164803 AGTCTTTAGAAACAGAGATTGAAGGG 58.835 38.462 0.00 0.00 0.00 3.95
350 358 8.424918 ACAGAAGTCTTTAGAAACAGAGATTGA 58.575 33.333 0.00 0.00 0.00 2.57
351 359 8.600449 ACAGAAGTCTTTAGAAACAGAGATTG 57.400 34.615 0.00 0.00 0.00 2.67
352 360 7.875554 GGACAGAAGTCTTTAGAAACAGAGATT 59.124 37.037 0.00 0.00 44.36 2.40
353 361 7.382898 GGACAGAAGTCTTTAGAAACAGAGAT 58.617 38.462 0.00 0.00 44.36 2.75
354 362 6.515200 CGGACAGAAGTCTTTAGAAACAGAGA 60.515 42.308 0.00 0.00 44.36 3.10
356 364 5.068723 ACGGACAGAAGTCTTTAGAAACAGA 59.931 40.000 0.00 0.00 44.36 3.41
357 365 5.290386 ACGGACAGAAGTCTTTAGAAACAG 58.710 41.667 0.00 0.00 44.36 3.16
358 366 5.272283 ACGGACAGAAGTCTTTAGAAACA 57.728 39.130 0.00 0.00 44.36 2.83
361 369 4.461781 CCCTACGGACAGAAGTCTTTAGAA 59.538 45.833 0.00 0.00 44.36 2.10
362 370 4.015084 CCCTACGGACAGAAGTCTTTAGA 58.985 47.826 0.00 0.00 44.36 2.10
363 371 3.429135 GCCCTACGGACAGAAGTCTTTAG 60.429 52.174 0.00 0.00 44.36 1.85
364 372 2.494870 GCCCTACGGACAGAAGTCTTTA 59.505 50.000 0.00 0.00 44.36 1.85
365 373 1.275573 GCCCTACGGACAGAAGTCTTT 59.724 52.381 0.00 0.00 44.36 2.52
366 374 0.896226 GCCCTACGGACAGAAGTCTT 59.104 55.000 0.00 0.00 44.36 3.01
367 375 1.313812 CGCCCTACGGACAGAAGTCT 61.314 60.000 0.00 0.00 44.36 3.24
368 376 1.139095 CGCCCTACGGACAGAAGTC 59.861 63.158 0.00 0.00 44.21 3.01
369 377 3.285371 CGCCCTACGGACAGAAGT 58.715 61.111 0.00 0.00 38.44 3.01
394 402 2.538449 CGCATATACGGTGTCAAAGGAC 59.462 50.000 0.00 0.00 44.57 3.85
395 403 2.816689 CGCATATACGGTGTCAAAGGA 58.183 47.619 0.00 0.00 0.00 3.36
396 404 1.260561 GCGCATATACGGTGTCAAAGG 59.739 52.381 0.30 0.00 0.00 3.11
397 405 1.071502 CGCGCATATACGGTGTCAAAG 60.072 52.381 8.75 0.00 0.00 2.77
398 406 0.924777 CGCGCATATACGGTGTCAAA 59.075 50.000 8.75 0.00 0.00 2.69
399 407 0.100861 TCGCGCATATACGGTGTCAA 59.899 50.000 8.75 0.00 0.00 3.18
400 408 0.317519 CTCGCGCATATACGGTGTCA 60.318 55.000 8.75 0.00 0.00 3.58
401 409 1.606350 GCTCGCGCATATACGGTGTC 61.606 60.000 8.75 0.00 35.78 3.67
402 410 1.660575 GCTCGCGCATATACGGTGT 60.661 57.895 8.75 0.00 35.78 4.16
403 411 1.337817 GAGCTCGCGCATATACGGTG 61.338 60.000 8.75 0.00 39.10 4.94
404 412 1.081376 GAGCTCGCGCATATACGGT 60.081 57.895 8.75 0.00 39.10 4.83
405 413 2.146519 CGAGCTCGCGCATATACGG 61.147 63.158 25.07 0.00 39.10 4.02
406 414 2.146519 CCGAGCTCGCGCATATACG 61.147 63.158 30.49 9.69 39.10 3.06
407 415 1.066114 GACCGAGCTCGCGCATATAC 61.066 60.000 30.49 10.29 39.10 1.47
408 416 1.209383 GACCGAGCTCGCGCATATA 59.791 57.895 30.49 0.00 39.10 0.86
409 417 2.049985 GACCGAGCTCGCGCATAT 60.050 61.111 30.49 10.48 39.10 1.78
410 418 3.058783 TTGACCGAGCTCGCGCATA 62.059 57.895 30.49 15.96 39.10 3.14
411 419 4.435436 TTGACCGAGCTCGCGCAT 62.435 61.111 30.49 14.87 39.10 4.73
416 424 2.203972 TTACCCGTTGACCGAGCTCG 62.204 60.000 29.06 29.06 39.56 5.03
417 425 0.458025 CTTACCCGTTGACCGAGCTC 60.458 60.000 2.73 2.73 39.56 4.09
418 426 1.590147 CTTACCCGTTGACCGAGCT 59.410 57.895 0.00 0.00 39.56 4.09
419 427 2.098831 GCTTACCCGTTGACCGAGC 61.099 63.158 0.00 0.00 39.56 5.03
420 428 1.804326 CGCTTACCCGTTGACCGAG 60.804 63.158 0.00 0.00 39.56 4.63
421 429 2.259204 CGCTTACCCGTTGACCGA 59.741 61.111 0.00 0.00 39.56 4.69
422 430 2.048877 ACGCTTACCCGTTGACCG 60.049 61.111 0.00 0.00 38.47 4.79
423 431 1.287041 GACACGCTTACCCGTTGACC 61.287 60.000 0.00 0.00 39.83 4.02
424 432 1.287041 GGACACGCTTACCCGTTGAC 61.287 60.000 0.00 0.00 39.83 3.18
425 433 1.005867 GGACACGCTTACCCGTTGA 60.006 57.895 0.00 0.00 39.83 3.18
426 434 2.030958 GGGACACGCTTACCCGTTG 61.031 63.158 0.00 0.00 39.83 4.10
427 435 2.344872 GGGACACGCTTACCCGTT 59.655 61.111 0.00 0.00 39.83 4.44
430 438 1.483415 TCAATAGGGACACGCTTACCC 59.517 52.381 0.00 0.00 43.55 3.69
431 439 2.547826 GTCAATAGGGACACGCTTACC 58.452 52.381 0.00 0.00 37.73 2.85
432 440 2.190981 CGTCAATAGGGACACGCTTAC 58.809 52.381 0.00 0.00 37.66 2.34
433 441 1.820519 ACGTCAATAGGGACACGCTTA 59.179 47.619 0.00 0.00 37.66 3.09
434 442 0.606604 ACGTCAATAGGGACACGCTT 59.393 50.000 0.00 0.00 37.66 4.68
435 443 0.108804 CACGTCAATAGGGACACGCT 60.109 55.000 0.00 0.00 37.66 5.07
436 444 1.082117 CCACGTCAATAGGGACACGC 61.082 60.000 0.00 0.00 37.66 5.34
437 445 1.082117 GCCACGTCAATAGGGACACG 61.082 60.000 0.00 0.00 37.66 4.49
438 446 0.036765 TGCCACGTCAATAGGGACAC 60.037 55.000 0.00 0.00 37.66 3.67
439 447 0.249120 CTGCCACGTCAATAGGGACA 59.751 55.000 0.00 0.00 37.66 4.02
440 448 1.090052 GCTGCCACGTCAATAGGGAC 61.090 60.000 0.00 0.00 34.42 4.46
441 449 1.220749 GCTGCCACGTCAATAGGGA 59.779 57.895 0.00 0.00 0.00 4.20
442 450 0.464373 ATGCTGCCACGTCAATAGGG 60.464 55.000 0.00 0.00 0.00 3.53
443 451 1.867233 GTATGCTGCCACGTCAATAGG 59.133 52.381 0.00 0.00 0.00 2.57
444 452 2.549926 TGTATGCTGCCACGTCAATAG 58.450 47.619 0.00 0.00 0.00 1.73
445 453 2.675844 GTTGTATGCTGCCACGTCAATA 59.324 45.455 0.00 0.00 0.00 1.90
446 454 1.468520 GTTGTATGCTGCCACGTCAAT 59.531 47.619 0.00 0.00 0.00 2.57
447 455 0.871722 GTTGTATGCTGCCACGTCAA 59.128 50.000 0.00 0.00 0.00 3.18
448 456 0.250081 TGTTGTATGCTGCCACGTCA 60.250 50.000 0.00 0.00 0.00 4.35
449 457 1.062587 GATGTTGTATGCTGCCACGTC 59.937 52.381 0.00 0.00 0.00 4.34
450 458 1.086696 GATGTTGTATGCTGCCACGT 58.913 50.000 0.00 0.00 0.00 4.49
451 459 1.085893 TGATGTTGTATGCTGCCACG 58.914 50.000 0.00 0.00 0.00 4.94
452 460 2.489329 ACTTGATGTTGTATGCTGCCAC 59.511 45.455 0.00 0.00 0.00 5.01
453 461 2.794103 ACTTGATGTTGTATGCTGCCA 58.206 42.857 0.00 0.00 0.00 4.92
454 462 4.963276 TTACTTGATGTTGTATGCTGCC 57.037 40.909 0.00 0.00 0.00 4.85
455 463 4.736793 GCATTACTTGATGTTGTATGCTGC 59.263 41.667 0.00 0.00 35.64 5.25
456 464 4.965762 CGCATTACTTGATGTTGTATGCTG 59.034 41.667 0.00 0.00 36.00 4.41
457 465 4.635765 ACGCATTACTTGATGTTGTATGCT 59.364 37.500 0.00 0.00 36.00 3.79
458 466 4.908736 ACGCATTACTTGATGTTGTATGC 58.091 39.130 0.00 0.00 35.41 3.14
459 467 6.349973 AGACGCATTACTTGATGTTGTATG 57.650 37.500 0.00 0.00 0.00 2.39
460 468 5.523916 GGAGACGCATTACTTGATGTTGTAT 59.476 40.000 0.00 0.00 0.00 2.29
461 469 4.868171 GGAGACGCATTACTTGATGTTGTA 59.132 41.667 0.00 0.00 0.00 2.41
462 470 3.684788 GGAGACGCATTACTTGATGTTGT 59.315 43.478 0.00 0.00 0.00 3.32
463 471 3.063997 GGGAGACGCATTACTTGATGTTG 59.936 47.826 0.00 0.00 0.00 3.33
464 472 3.270877 GGGAGACGCATTACTTGATGTT 58.729 45.455 0.00 0.00 0.00 2.71
465 473 2.236146 TGGGAGACGCATTACTTGATGT 59.764 45.455 0.00 0.00 0.00 3.06
466 474 2.868583 CTGGGAGACGCATTACTTGATG 59.131 50.000 0.00 0.00 0.00 3.07
467 475 2.158900 CCTGGGAGACGCATTACTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
468 476 1.207089 CCTGGGAGACGCATTACTTGA 59.793 52.381 0.00 0.00 0.00 3.02
469 477 1.656652 CCTGGGAGACGCATTACTTG 58.343 55.000 0.00 0.00 0.00 3.16
470 478 0.541863 CCCTGGGAGACGCATTACTT 59.458 55.000 7.01 0.00 0.00 2.24
471 479 1.972660 GCCCTGGGAGACGCATTACT 61.973 60.000 19.27 0.00 0.00 2.24
472 480 1.523938 GCCCTGGGAGACGCATTAC 60.524 63.158 19.27 0.00 0.00 1.89
473 481 1.686325 GAGCCCTGGGAGACGCATTA 61.686 60.000 19.27 0.00 0.00 1.90
474 482 3.011517 AGCCCTGGGAGACGCATT 61.012 61.111 19.27 0.00 0.00 3.56
475 483 2.589610 TAGAGCCCTGGGAGACGCAT 62.590 60.000 19.27 0.00 0.00 4.73
476 484 3.296842 TAGAGCCCTGGGAGACGCA 62.297 63.158 19.27 0.00 0.00 5.24
477 485 2.442272 TAGAGCCCTGGGAGACGC 60.442 66.667 19.27 0.00 0.00 5.19
478 486 1.830408 CCTAGAGCCCTGGGAGACG 60.830 68.421 19.27 0.00 43.12 4.18
479 487 0.325765 AACCTAGAGCCCTGGGAGAC 60.326 60.000 19.27 6.52 43.12 3.36
480 488 0.032017 GAACCTAGAGCCCTGGGAGA 60.032 60.000 19.27 0.00 43.12 3.71
481 489 1.051556 GGAACCTAGAGCCCTGGGAG 61.052 65.000 19.27 4.33 43.12 4.30
482 490 1.003051 GGAACCTAGAGCCCTGGGA 59.997 63.158 19.27 0.00 43.12 4.37
483 491 0.695803 ATGGAACCTAGAGCCCTGGG 60.696 60.000 8.86 8.86 45.62 4.45
484 492 1.216990 AATGGAACCTAGAGCCCTGG 58.783 55.000 0.00 0.00 0.00 4.45
485 493 2.507471 AGAAATGGAACCTAGAGCCCTG 59.493 50.000 0.00 0.00 0.00 4.45
486 494 2.507471 CAGAAATGGAACCTAGAGCCCT 59.493 50.000 0.00 0.00 0.00 5.19
487 495 2.422093 CCAGAAATGGAACCTAGAGCCC 60.422 54.545 0.00 0.00 0.00 5.19
488 496 2.422093 CCCAGAAATGGAACCTAGAGCC 60.422 54.545 0.00 0.00 0.00 4.70
489 497 2.239907 ACCCAGAAATGGAACCTAGAGC 59.760 50.000 0.00 0.00 0.00 4.09
490 498 5.896073 ATACCCAGAAATGGAACCTAGAG 57.104 43.478 0.00 0.00 0.00 2.43
491 499 6.449956 AGTATACCCAGAAATGGAACCTAGA 58.550 40.000 0.00 0.00 0.00 2.43
492 500 6.749036 AGTATACCCAGAAATGGAACCTAG 57.251 41.667 0.00 0.00 0.00 3.02
493 501 7.366191 GGAAAGTATACCCAGAAATGGAACCTA 60.366 40.741 0.00 0.00 0.00 3.08
494 502 6.402981 AAAGTATACCCAGAAATGGAACCT 57.597 37.500 0.00 0.00 0.00 3.50
495 503 5.593095 GGAAAGTATACCCAGAAATGGAACC 59.407 44.000 0.00 0.00 0.00 3.62
496 504 6.424032 AGGAAAGTATACCCAGAAATGGAAC 58.576 40.000 0.00 0.00 0.00 3.62
497 505 6.652205 AGGAAAGTATACCCAGAAATGGAA 57.348 37.500 0.00 0.00 0.00 3.53
498 506 7.404980 ACTTAGGAAAGTATACCCAGAAATGGA 59.595 37.037 0.00 0.00 44.26 3.41
499 507 7.499232 CACTTAGGAAAGTATACCCAGAAATGG 59.501 40.741 0.00 0.00 44.28 3.16
500 508 8.047310 ACACTTAGGAAAGTATACCCAGAAATG 58.953 37.037 0.00 0.00 44.28 2.32
501 509 8.047310 CACACTTAGGAAAGTATACCCAGAAAT 58.953 37.037 0.00 0.00 44.28 2.17
502 510 7.016858 ACACACTTAGGAAAGTATACCCAGAAA 59.983 37.037 0.00 0.00 44.28 2.52
503 511 6.499350 ACACACTTAGGAAAGTATACCCAGAA 59.501 38.462 0.00 0.00 44.28 3.02
504 512 6.021030 ACACACTTAGGAAAGTATACCCAGA 58.979 40.000 0.00 0.00 44.28 3.86
505 513 6.154706 AGACACACTTAGGAAAGTATACCCAG 59.845 42.308 0.00 0.00 44.28 4.45
506 514 6.021030 AGACACACTTAGGAAAGTATACCCA 58.979 40.000 0.00 0.00 44.28 4.51
507 515 6.541934 AGACACACTTAGGAAAGTATACCC 57.458 41.667 0.00 0.00 44.28 3.69
511 519 9.877178 CTCATTTAGACACACTTAGGAAAGTAT 57.123 33.333 0.00 0.00 44.28 2.12
512 520 7.817962 GCTCATTTAGACACACTTAGGAAAGTA 59.182 37.037 0.00 0.00 44.28 2.24
514 522 6.183360 CGCTCATTTAGACACACTTAGGAAAG 60.183 42.308 0.00 0.00 38.77 2.62
515 523 5.637810 CGCTCATTTAGACACACTTAGGAAA 59.362 40.000 0.00 0.00 0.00 3.13
516 524 5.047590 TCGCTCATTTAGACACACTTAGGAA 60.048 40.000 0.00 0.00 0.00 3.36
517 525 4.461431 TCGCTCATTTAGACACACTTAGGA 59.539 41.667 0.00 0.00 0.00 2.94
518 526 4.744570 TCGCTCATTTAGACACACTTAGG 58.255 43.478 0.00 0.00 0.00 2.69
519 527 5.220043 CGTTCGCTCATTTAGACACACTTAG 60.220 44.000 0.00 0.00 0.00 2.18
520 528 4.619760 CGTTCGCTCATTTAGACACACTTA 59.380 41.667 0.00 0.00 0.00 2.24
521 529 3.428870 CGTTCGCTCATTTAGACACACTT 59.571 43.478 0.00 0.00 0.00 3.16
522 530 2.987149 CGTTCGCTCATTTAGACACACT 59.013 45.455 0.00 0.00 0.00 3.55
523 531 2.092211 CCGTTCGCTCATTTAGACACAC 59.908 50.000 0.00 0.00 0.00 3.82
524 532 2.333926 CCGTTCGCTCATTTAGACACA 58.666 47.619 0.00 0.00 0.00 3.72
525 533 1.659098 CCCGTTCGCTCATTTAGACAC 59.341 52.381 0.00 0.00 0.00 3.67
526 534 1.274167 ACCCGTTCGCTCATTTAGACA 59.726 47.619 0.00 0.00 0.00 3.41
527 535 2.005971 ACCCGTTCGCTCATTTAGAC 57.994 50.000 0.00 0.00 0.00 2.59
528 536 3.382227 TCATACCCGTTCGCTCATTTAGA 59.618 43.478 0.00 0.00 0.00 2.10
529 537 3.489785 GTCATACCCGTTCGCTCATTTAG 59.510 47.826 0.00 0.00 0.00 1.85
530 538 3.450578 GTCATACCCGTTCGCTCATTTA 58.549 45.455 0.00 0.00 0.00 1.40
531 539 2.277084 GTCATACCCGTTCGCTCATTT 58.723 47.619 0.00 0.00 0.00 2.32
532 540 1.472728 GGTCATACCCGTTCGCTCATT 60.473 52.381 0.00 0.00 30.04 2.57
533 541 0.104304 GGTCATACCCGTTCGCTCAT 59.896 55.000 0.00 0.00 30.04 2.90
534 542 1.514087 GGTCATACCCGTTCGCTCA 59.486 57.895 0.00 0.00 30.04 4.26
535 543 1.588139 CGGTCATACCCGTTCGCTC 60.588 63.158 0.00 0.00 43.07 5.03
536 544 2.493030 CGGTCATACCCGTTCGCT 59.507 61.111 0.00 0.00 43.07 4.93
543 551 1.849097 GTGTCGATTCGGTCATACCC 58.151 55.000 6.18 0.00 33.75 3.69
544 552 1.202222 ACGTGTCGATTCGGTCATACC 60.202 52.381 6.18 0.00 34.05 2.73
545 553 2.107178 GACGTGTCGATTCGGTCATAC 58.893 52.381 6.18 0.00 0.00 2.39
546 554 2.011947 AGACGTGTCGATTCGGTCATA 58.988 47.619 6.18 0.00 34.09 2.15
555 563 2.711922 GCCAGGGAGACGTGTCGAT 61.712 63.158 6.62 0.00 44.59 3.59
622 630 2.046314 CACCGCCCTGAAATCCGT 60.046 61.111 0.00 0.00 0.00 4.69
658 666 4.680237 CAGAACCACCTCGCCGCA 62.680 66.667 0.00 0.00 0.00 5.69
700 708 1.952102 TACCCCCGCTTGTCGATGAC 61.952 60.000 0.00 0.00 41.67 3.06
709 717 3.243816 AACCGTGTACCCCCGCTT 61.244 61.111 0.00 0.00 0.00 4.68
843 852 2.043953 GGCCGCATTTCCTCCCTT 60.044 61.111 0.00 0.00 0.00 3.95
905 914 0.317436 GAGCGAGCTCACCAGATACG 60.317 60.000 19.09 0.00 42.31 3.06
906 915 0.031449 GGAGCGAGCTCACCAGATAC 59.969 60.000 24.21 3.12 44.40 2.24
994 1007 2.588620 GTCTATCTCCACCATCTCCGT 58.411 52.381 0.00 0.00 0.00 4.69
1011 1024 2.023673 CTCTGCATCTTCTCCTCGTCT 58.976 52.381 0.00 0.00 0.00 4.18
1082 1766 2.101750 TCTCGCTTTCTTGTGTACCACA 59.898 45.455 0.00 0.00 43.02 4.17
1095 1779 1.409064 TCCGCATACATCTCTCGCTTT 59.591 47.619 0.00 0.00 0.00 3.51
1304 3630 1.365633 GATCTGAGCGCCGATTCCT 59.634 57.895 2.29 0.00 0.00 3.36
1378 3712 3.760035 CACCGGGTCCTCGTGGAG 61.760 72.222 6.32 0.00 44.16 3.86
1624 4166 5.191323 CCCCTAGATTCATATGCAGGAGATT 59.809 44.000 0.00 0.00 0.00 2.40
1748 4294 6.115446 TGCCCATTATCAACTTCTACTTCAG 58.885 40.000 0.00 0.00 0.00 3.02
1795 4341 7.169140 GTCAATGTGTGTAAATTTTTCCTGACC 59.831 37.037 0.00 0.00 0.00 4.02
1982 4541 4.974645 ACCTCACAGAAAACCACATCTA 57.025 40.909 0.00 0.00 0.00 1.98
2042 4666 7.987458 CCACTTCTTCCAGCATAGTATTTTCTA 59.013 37.037 0.00 0.00 0.00 2.10
2131 4832 3.447229 CCCCAATTTCTGTGGTCCATAAC 59.553 47.826 0.00 0.00 34.01 1.89
2172 4873 4.357279 GGCCTGGGAGCAGCAAGT 62.357 66.667 0.00 0.00 0.00 3.16
2218 4920 1.576272 CCTCTCCCCCTCTCCTTCTTA 59.424 57.143 0.00 0.00 0.00 2.10
2267 4970 3.716872 GGAGGAAATCAGGTTCTGGGATA 59.283 47.826 0.00 0.00 31.51 2.59
2304 5007 0.533308 TGTTACACCGTGCCCTTGTC 60.533 55.000 0.00 0.00 0.00 3.18
2371 5074 9.327529 CGCAAAACAAAATGCAATAAAATATGT 57.672 25.926 0.00 0.00 42.68 2.29
2372 5075 9.539139 TCGCAAAACAAAATGCAATAAAATATG 57.461 25.926 0.00 0.00 42.68 1.78
2374 5077 9.752274 GATCGCAAAACAAAATGCAATAAAATA 57.248 25.926 0.00 0.00 42.68 1.40
2375 5078 7.750014 GGATCGCAAAACAAAATGCAATAAAAT 59.250 29.630 0.00 0.00 42.68 1.82
2376 5079 7.041508 AGGATCGCAAAACAAAATGCAATAAAA 60.042 29.630 0.00 0.00 42.68 1.52
2377 5080 6.426328 AGGATCGCAAAACAAAATGCAATAAA 59.574 30.769 0.00 0.00 42.68 1.40
2378 5081 5.931146 AGGATCGCAAAACAAAATGCAATAA 59.069 32.000 0.00 0.00 42.68 1.40
2379 5082 5.477510 AGGATCGCAAAACAAAATGCAATA 58.522 33.333 0.00 0.00 42.68 1.90
2380 5083 4.317488 AGGATCGCAAAACAAAATGCAAT 58.683 34.783 0.00 0.00 42.68 3.56
2381 5084 3.726607 AGGATCGCAAAACAAAATGCAA 58.273 36.364 0.00 0.00 42.68 4.08
2382 5085 3.383620 AGGATCGCAAAACAAAATGCA 57.616 38.095 0.00 0.00 42.68 3.96
2383 5086 4.732784 TCTAGGATCGCAAAACAAAATGC 58.267 39.130 0.00 0.00 39.17 3.56
2384 5087 7.816945 ATTTCTAGGATCGCAAAACAAAATG 57.183 32.000 0.00 0.00 0.00 2.32
2385 5088 8.306761 AGAATTTCTAGGATCGCAAAACAAAAT 58.693 29.630 0.00 0.00 0.00 1.82
2386 5089 7.657336 AGAATTTCTAGGATCGCAAAACAAAA 58.343 30.769 0.00 0.00 0.00 2.44
2387 5090 7.214467 AGAATTTCTAGGATCGCAAAACAAA 57.786 32.000 0.00 0.00 0.00 2.83
2388 5091 6.817765 AGAATTTCTAGGATCGCAAAACAA 57.182 33.333 0.00 0.00 0.00 2.83
2389 5092 6.035650 CGTAGAATTTCTAGGATCGCAAAACA 59.964 38.462 17.32 0.00 37.10 2.83
2390 5093 6.411652 CGTAGAATTTCTAGGATCGCAAAAC 58.588 40.000 17.32 0.24 37.10 2.43
2391 5094 5.006358 GCGTAGAATTTCTAGGATCGCAAAA 59.994 40.000 23.59 0.00 39.21 2.44
2392 5095 4.506654 GCGTAGAATTTCTAGGATCGCAAA 59.493 41.667 23.59 0.00 39.21 3.68
2393 5096 4.049186 GCGTAGAATTTCTAGGATCGCAA 58.951 43.478 23.59 0.00 39.21 4.85
2394 5097 3.067601 TGCGTAGAATTTCTAGGATCGCA 59.932 43.478 25.47 25.47 43.52 5.10
2395 5098 3.639538 TGCGTAGAATTTCTAGGATCGC 58.360 45.455 23.59 22.91 39.58 4.58
2396 5099 5.282510 AGTTGCGTAGAATTTCTAGGATCG 58.717 41.667 23.59 16.17 37.10 3.69
2397 5100 6.273825 TGAGTTGCGTAGAATTTCTAGGATC 58.726 40.000 23.59 16.26 37.10 3.36
2398 5101 6.222038 TGAGTTGCGTAGAATTTCTAGGAT 57.778 37.500 23.59 10.22 37.10 3.24
2399 5102 5.654603 TGAGTTGCGTAGAATTTCTAGGA 57.345 39.130 23.59 10.26 37.10 2.94
2400 5103 5.292101 CCTTGAGTTGCGTAGAATTTCTAGG 59.708 44.000 17.73 17.73 37.76 3.02
2401 5104 6.035112 GTCCTTGAGTTGCGTAGAATTTCTAG 59.965 42.308 6.37 3.18 28.01 2.43
2402 5105 5.867716 GTCCTTGAGTTGCGTAGAATTTCTA 59.132 40.000 1.90 1.90 0.00 2.10
2403 5106 4.691216 GTCCTTGAGTTGCGTAGAATTTCT 59.309 41.667 4.03 4.03 0.00 2.52
2404 5107 4.142881 GGTCCTTGAGTTGCGTAGAATTTC 60.143 45.833 0.00 0.00 0.00 2.17
2405 5108 3.751698 GGTCCTTGAGTTGCGTAGAATTT 59.248 43.478 0.00 0.00 0.00 1.82
2406 5109 3.335579 GGTCCTTGAGTTGCGTAGAATT 58.664 45.455 0.00 0.00 0.00 2.17
2407 5110 2.354805 GGGTCCTTGAGTTGCGTAGAAT 60.355 50.000 0.00 0.00 0.00 2.40
2408 5111 1.001633 GGGTCCTTGAGTTGCGTAGAA 59.998 52.381 0.00 0.00 0.00 2.10
2409 5112 0.606604 GGGTCCTTGAGTTGCGTAGA 59.393 55.000 0.00 0.00 0.00 2.59
2410 5113 0.320374 TGGGTCCTTGAGTTGCGTAG 59.680 55.000 0.00 0.00 0.00 3.51
2411 5114 0.034337 GTGGGTCCTTGAGTTGCGTA 59.966 55.000 0.00 0.00 0.00 4.42
2412 5115 1.227853 GTGGGTCCTTGAGTTGCGT 60.228 57.895 0.00 0.00 0.00 5.24
2413 5116 2.317609 CGTGGGTCCTTGAGTTGCG 61.318 63.158 0.00 0.00 0.00 4.85
2414 5117 1.966451 CCGTGGGTCCTTGAGTTGC 60.966 63.158 0.00 0.00 0.00 4.17
2415 5118 0.320771 CTCCGTGGGTCCTTGAGTTG 60.321 60.000 0.00 0.00 0.00 3.16
2416 5119 0.471211 TCTCCGTGGGTCCTTGAGTT 60.471 55.000 0.00 0.00 0.00 3.01
2417 5120 0.900647 CTCTCCGTGGGTCCTTGAGT 60.901 60.000 0.00 0.00 0.00 3.41
2418 5121 0.612174 TCTCTCCGTGGGTCCTTGAG 60.612 60.000 0.00 0.00 0.00 3.02
2419 5122 0.612174 CTCTCTCCGTGGGTCCTTGA 60.612 60.000 0.00 0.00 0.00 3.02
2420 5123 0.900647 ACTCTCTCCGTGGGTCCTTG 60.901 60.000 0.00 0.00 0.00 3.61
2421 5124 0.178929 AACTCTCTCCGTGGGTCCTT 60.179 55.000 0.00 0.00 0.00 3.36
2422 5125 0.900647 CAACTCTCTCCGTGGGTCCT 60.901 60.000 0.00 0.00 0.00 3.85
2423 5126 1.592223 CAACTCTCTCCGTGGGTCC 59.408 63.158 0.00 0.00 0.00 4.46
2424 5127 1.592223 CCAACTCTCTCCGTGGGTC 59.408 63.158 0.00 0.00 0.00 4.46
2425 5128 1.913762 CCCAACTCTCTCCGTGGGT 60.914 63.158 0.00 0.00 32.22 4.51
2426 5129 2.660064 CCCCAACTCTCTCCGTGGG 61.660 68.421 0.30 0.30 36.40 4.61
2427 5130 0.978146 ATCCCCAACTCTCTCCGTGG 60.978 60.000 0.00 0.00 0.00 4.94
2428 5131 0.905357 AATCCCCAACTCTCTCCGTG 59.095 55.000 0.00 0.00 0.00 4.94
2429 5132 1.555533 GAAATCCCCAACTCTCTCCGT 59.444 52.381 0.00 0.00 0.00 4.69
2430 5133 1.471676 CGAAATCCCCAACTCTCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
2431 5134 1.555533 ACGAAATCCCCAACTCTCTCC 59.444 52.381 0.00 0.00 0.00 3.71
2432 5135 3.336138 AACGAAATCCCCAACTCTCTC 57.664 47.619 0.00 0.00 0.00 3.20
2433 5136 5.437191 AATAACGAAATCCCCAACTCTCT 57.563 39.130 0.00 0.00 0.00 3.10
2434 5137 6.150474 TGAAAATAACGAAATCCCCAACTCTC 59.850 38.462 0.00 0.00 0.00 3.20
2435 5138 6.007703 TGAAAATAACGAAATCCCCAACTCT 58.992 36.000 0.00 0.00 0.00 3.24
2436 5139 6.262193 TGAAAATAACGAAATCCCCAACTC 57.738 37.500 0.00 0.00 0.00 3.01
2437 5140 6.850752 ATGAAAATAACGAAATCCCCAACT 57.149 33.333 0.00 0.00 0.00 3.16
2438 5141 9.594478 AAATATGAAAATAACGAAATCCCCAAC 57.406 29.630 0.00 0.00 0.00 3.77
2439 5142 9.593134 CAAATATGAAAATAACGAAATCCCCAA 57.407 29.630 0.00 0.00 0.00 4.12
2440 5143 8.200792 CCAAATATGAAAATAACGAAATCCCCA 58.799 33.333 0.00 0.00 0.00 4.96
2441 5144 7.655732 CCCAAATATGAAAATAACGAAATCCCC 59.344 37.037 0.00 0.00 0.00 4.81
2442 5145 8.201464 ACCCAAATATGAAAATAACGAAATCCC 58.799 33.333 0.00 0.00 0.00 3.85
2443 5146 9.594478 AACCCAAATATGAAAATAACGAAATCC 57.406 29.630 0.00 0.00 0.00 3.01
2448 5151 9.849166 GAGAAAACCCAAATATGAAAATAACGA 57.151 29.630 0.00 0.00 0.00 3.85
2449 5152 9.632807 TGAGAAAACCCAAATATGAAAATAACG 57.367 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.