Multiple sequence alignment - TraesCS2D01G469600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G469600 chr2D 100.000 2300 0 0 1 2300 574437118 574434819 0.000000e+00 4248.0
1 TraesCS2D01G469600 chr2D 93.534 464 11 6 1290 1734 606163088 606163551 0.000000e+00 673.0
2 TraesCS2D01G469600 chr2B 93.271 1293 84 3 1 1290 690603107 690601815 0.000000e+00 1903.0
3 TraesCS2D01G469600 chr2B 90.083 1321 95 18 1 1290 690678227 690676912 0.000000e+00 1681.0
4 TraesCS2D01G469600 chr2B 93.991 466 9 2 1290 1736 755055540 755056005 0.000000e+00 688.0
5 TraesCS2D01G469600 chr2B 81.071 560 52 18 1736 2265 690601825 690601290 4.600000e-107 398.0
6 TraesCS2D01G469600 chr2B 88.557 201 21 2 190 388 45729800 45729600 2.280000e-60 243.0
7 TraesCS2D01G469600 chr2B 88.557 201 22 1 190 389 438743921 438744121 2.280000e-60 243.0
8 TraesCS2D01G469600 chr2B 86.634 202 23 4 190 388 680079741 680079941 1.070000e-53 220.0
9 TraesCS2D01G469600 chr2A 90.619 1130 68 6 166 1290 712805671 712804575 0.000000e+00 1465.0
10 TraesCS2D01G469600 chr2A 87.310 197 24 1 193 388 69311213 69311017 8.270000e-55 224.0
11 TraesCS2D01G469600 chr2A 86.275 204 22 3 190 388 194713400 194713198 1.380000e-52 217.0
12 TraesCS2D01G469600 chr2A 92.908 141 9 1 9 148 712807031 712806891 1.080000e-48 204.0
13 TraesCS2D01G469600 chr3A 94.421 466 6 4 1290 1736 698298409 698298873 0.000000e+00 699.0
14 TraesCS2D01G469600 chr1A 94.421 466 7 6 1289 1735 82077336 82076871 0.000000e+00 699.0
15 TraesCS2D01G469600 chr1A 93.869 473 7 6 1285 1736 583298495 583298966 0.000000e+00 693.0
16 TraesCS2D01G469600 chr1A 81.548 168 24 6 226 388 527949361 527949196 5.160000e-27 132.0
17 TraesCS2D01G469600 chr7B 94.206 466 8 3 1290 1736 624247466 624247001 0.000000e+00 693.0
18 TraesCS2D01G469600 chr7B 86.239 218 26 4 179 395 157803244 157803030 1.370000e-57 233.0
19 TraesCS2D01G469600 chr7B 86.070 201 27 1 189 388 540063460 540063260 4.980000e-52 215.0
20 TraesCS2D01G469600 chr4A 94.206 466 8 6 1290 1736 617684635 617685100 0.000000e+00 693.0
21 TraesCS2D01G469600 chr6B 94.017 468 9 6 1290 1738 65136008 65135541 0.000000e+00 691.0
22 TraesCS2D01G469600 chr6B 86.760 574 55 16 728 1290 78151563 78151000 9.030000e-174 619.0
23 TraesCS2D01G469600 chr6B 85.589 569 63 15 728 1290 77958161 77957606 1.530000e-161 579.0
24 TraesCS2D01G469600 chr6B 85.362 567 65 16 737 1290 61490233 61490794 2.560000e-159 571.0
25 TraesCS2D01G469600 chr6B 85.432 556 56 20 750 1290 58319992 58319447 2.580000e-154 555.0
26 TraesCS2D01G469600 chrUn 93.991 466 9 6 1290 1736 235766266 235766731 0.000000e+00 688.0
27 TraesCS2D01G469600 chrUn 88.333 480 40 13 816 1290 27335156 27335624 1.540000e-156 562.0
28 TraesCS2D01G469600 chr5D 93.803 468 9 3 1290 1737 201852408 201851941 0.000000e+00 686.0
29 TraesCS2D01G469600 chr5D 93.763 465 10 2 1290 1735 552000090 551999626 0.000000e+00 680.0
30 TraesCS2D01G469600 chr5D 86.070 201 25 3 190 388 449691211 449691410 1.790000e-51 213.0
31 TraesCS2D01G469600 chr3B 93.978 465 9 6 1290 1735 472877797 472878261 0.000000e+00 686.0
32 TraesCS2D01G469600 chr7A 93.790 467 8 7 1290 1736 47789463 47788998 0.000000e+00 682.0
33 TraesCS2D01G469600 chr4D 93.404 470 12 2 1290 1740 479296745 479296276 0.000000e+00 678.0
34 TraesCS2D01G469600 chr4D 95.918 49 2 0 336 384 324687849 324687801 1.890000e-11 80.5
35 TraesCS2D01G469600 chr6D 86.071 560 61 13 740 1290 28708337 28707786 9.160000e-164 586.0
36 TraesCS2D01G469600 chr6D 89.062 128 12 2 297 423 37519732 37519858 8.510000e-35 158.0
37 TraesCS2D01G469600 chr6D 84.615 156 22 2 235 388 38840825 38840670 1.100000e-33 154.0
38 TraesCS2D01G469600 chr6A 86.213 544 53 18 760 1290 33008841 33008307 9.220000e-159 569.0
39 TraesCS2D01G469600 chr3D 91.525 413 30 2 1328 1735 569304529 569304941 4.290000e-157 564.0
40 TraesCS2D01G469600 chr3D 85.075 201 24 6 190 388 535778282 535778478 1.390000e-47 200.0
41 TraesCS2D01G469600 chr1B 88.717 452 45 2 1290 1735 566714648 566715099 4.320000e-152 547.0
42 TraesCS2D01G469600 chr1B 83.920 199 20 6 190 388 633139732 633139918 1.820000e-41 180.0
43 TraesCS2D01G469600 chr1B 78.698 169 30 5 225 388 498633139 498633306 8.690000e-20 108.0
44 TraesCS2D01G469600 chr7D 89.447 199 20 1 190 387 194080974 194080776 1.360000e-62 250.0
45 TraesCS2D01G469600 chr7D 85.500 200 28 1 190 388 199606876 199607075 8.330000e-50 207.0
46 TraesCS2D01G469600 chr7D 84.500 200 30 1 190 388 485106720 485106521 1.800000e-46 196.0
47 TraesCS2D01G469600 chr7D 82.381 210 28 6 187 388 6778743 6778535 8.450000e-40 174.0
48 TraesCS2D01G469600 chr5A 84.653 202 24 6 191 388 411990999 411991197 6.480000e-46 195.0
49 TraesCS2D01G469600 chr4B 84.314 204 25 2 186 388 240192937 240193134 2.330000e-45 193.0
50 TraesCS2D01G469600 chr4B 83.152 184 28 3 206 388 129104428 129104247 5.080000e-37 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G469600 chr2D 574434819 574437118 2299 True 4248.0 4248 100.0000 1 2300 1 chr2D.!!$R1 2299
1 TraesCS2D01G469600 chr2B 690676912 690678227 1315 True 1681.0 1681 90.0830 1 1290 1 chr2B.!!$R2 1289
2 TraesCS2D01G469600 chr2B 690601290 690603107 1817 True 1150.5 1903 87.1710 1 2265 2 chr2B.!!$R3 2264
3 TraesCS2D01G469600 chr2A 712804575 712807031 2456 True 834.5 1465 91.7635 9 1290 2 chr2A.!!$R3 1281
4 TraesCS2D01G469600 chr6B 78151000 78151563 563 True 619.0 619 86.7600 728 1290 1 chr6B.!!$R4 562
5 TraesCS2D01G469600 chr6B 77957606 77958161 555 True 579.0 579 85.5890 728 1290 1 chr6B.!!$R3 562
6 TraesCS2D01G469600 chr6B 61490233 61490794 561 False 571.0 571 85.3620 737 1290 1 chr6B.!!$F1 553
7 TraesCS2D01G469600 chr6B 58319447 58319992 545 True 555.0 555 85.4320 750 1290 1 chr6B.!!$R1 540
8 TraesCS2D01G469600 chr6D 28707786 28708337 551 True 586.0 586 86.0710 740 1290 1 chr6D.!!$R1 550
9 TraesCS2D01G469600 chr6A 33008307 33008841 534 True 569.0 569 86.2130 760 1290 1 chr6A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 1797 1.133025 CTTTGCCCTAATCACCTTGCG 59.867 52.381 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 2839 0.10212 TTCAAACCTTTGCAGCGTGG 59.898 50.0 0.0 0.0 38.05 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.617308 GAGTCGACGGGAATCTATGTCA 59.383 50.000 10.46 0.00 36.82 3.58
71 72 3.550678 GTCGACGGGAATCTATGTCAAAC 59.449 47.826 0.00 0.00 0.00 2.93
74 75 4.514401 GACGGGAATCTATGTCAAACCTT 58.486 43.478 0.00 0.00 0.00 3.50
150 152 3.787785 TCAAAGATAAAGCGTCGCCATA 58.212 40.909 14.86 7.84 0.00 2.74
197 1401 8.308851 AGGACTAAAATCTAACCTACTCCTTC 57.691 38.462 0.00 0.00 0.00 3.46
208 1412 3.055312 ACCTACTCCTTCCGTTTCCATTC 60.055 47.826 0.00 0.00 0.00 2.67
438 1642 5.415961 AGGGAGTATGTATTTATGGGAGCT 58.584 41.667 0.00 0.00 0.00 4.09
593 1797 1.133025 CTTTGCCCTAATCACCTTGCG 59.867 52.381 0.00 0.00 0.00 4.85
626 1830 1.392710 ATCCCTACGAACGAGGCAGG 61.393 60.000 0.14 2.30 32.18 4.85
641 1845 1.605992 CAGGCCAGCATCCTCAGAA 59.394 57.895 5.01 0.00 0.00 3.02
697 1919 9.965902 ATAATTTCCTTAGTTGTCAGTTCTCAT 57.034 29.630 0.00 0.00 0.00 2.90
706 1932 6.096036 AGTTGTCAGTTCTCATATGACGAAG 58.904 40.000 14.20 1.70 45.00 3.79
715 1941 4.219725 TCTCATATGACGAAGGAACACACA 59.780 41.667 0.00 0.00 0.00 3.72
722 1948 6.438259 TGACGAAGGAACACACAAATTTTA 57.562 33.333 0.00 0.00 0.00 1.52
779 2008 6.093082 GGCAAAATTCAATATTTTGAGCTGCT 59.907 34.615 20.96 0.00 46.36 4.24
789 2019 2.188994 GAGCTGCTTCCGCCTCAT 59.811 61.111 2.53 0.00 34.43 2.90
838 2070 1.228583 ATCCGCGCCATCTCTCCTA 60.229 57.895 0.00 0.00 0.00 2.94
843 2076 1.544724 GCGCCATCTCTCCTAGATCT 58.455 55.000 0.00 0.00 43.42 2.75
912 2147 3.011257 CCTCCTCCCTTGTTAAATTCCCA 59.989 47.826 0.00 0.00 0.00 4.37
1038 2303 2.851045 GGGAAGGGTCTGGGCAAA 59.149 61.111 0.00 0.00 0.00 3.68
1152 2417 3.051210 CGCATCTCGGGGCTCATA 58.949 61.111 0.00 0.00 33.78 2.15
1165 2430 2.797786 GGCTCATATACGAGGAGACCT 58.202 52.381 0.00 0.00 38.11 3.85
1294 2559 2.975799 GACAGGGGCGCACGAAAA 60.976 61.111 10.83 0.00 0.00 2.29
1295 2560 2.282180 ACAGGGGCGCACGAAAAT 60.282 55.556 10.83 0.00 0.00 1.82
1296 2561 1.003112 ACAGGGGCGCACGAAAATA 60.003 52.632 10.83 0.00 0.00 1.40
1297 2562 0.393808 ACAGGGGCGCACGAAAATAT 60.394 50.000 10.83 0.00 0.00 1.28
1298 2563 1.134340 ACAGGGGCGCACGAAAATATA 60.134 47.619 10.83 0.00 0.00 0.86
1299 2564 1.944024 CAGGGGCGCACGAAAATATAA 59.056 47.619 10.83 0.00 0.00 0.98
1300 2565 2.356382 CAGGGGCGCACGAAAATATAAA 59.644 45.455 10.83 0.00 0.00 1.40
1301 2566 3.018149 AGGGGCGCACGAAAATATAAAA 58.982 40.909 10.83 0.00 0.00 1.52
1302 2567 3.634910 AGGGGCGCACGAAAATATAAAAT 59.365 39.130 10.83 0.00 0.00 1.82
1303 2568 4.822896 AGGGGCGCACGAAAATATAAAATA 59.177 37.500 10.83 0.00 0.00 1.40
1304 2569 5.048991 AGGGGCGCACGAAAATATAAAATAG 60.049 40.000 10.83 0.00 0.00 1.73
1305 2570 4.615541 GGGCGCACGAAAATATAAAATAGC 59.384 41.667 10.83 0.00 0.00 2.97
1306 2571 5.209240 GGCGCACGAAAATATAAAATAGCA 58.791 37.500 10.83 0.00 0.00 3.49
1307 2572 5.115021 GGCGCACGAAAATATAAAATAGCAC 59.885 40.000 10.83 0.00 0.00 4.40
1308 2573 5.679355 GCGCACGAAAATATAAAATAGCACA 59.321 36.000 0.30 0.00 0.00 4.57
1309 2574 6.129717 GCGCACGAAAATATAAAATAGCACAG 60.130 38.462 0.30 0.00 0.00 3.66
1310 2575 6.129717 CGCACGAAAATATAAAATAGCACAGC 60.130 38.462 0.00 0.00 0.00 4.40
1311 2576 6.912591 GCACGAAAATATAAAATAGCACAGCT 59.087 34.615 0.00 0.00 43.41 4.24
1312 2577 7.096885 GCACGAAAATATAAAATAGCACAGCTG 60.097 37.037 13.48 13.48 40.10 4.24
1313 2578 6.912591 ACGAAAATATAAAATAGCACAGCTGC 59.087 34.615 15.27 0.57 44.63 5.25
1314 2579 6.912051 CGAAAATATAAAATAGCACAGCTGCA 59.088 34.615 15.27 0.00 46.97 4.41
1315 2580 7.096885 CGAAAATATAAAATAGCACAGCTGCAC 60.097 37.037 15.27 5.98 46.97 4.57
1316 2581 5.695851 ATATAAAATAGCACAGCTGCACC 57.304 39.130 15.27 1.79 46.97 5.01
1317 2582 0.890683 AAAATAGCACAGCTGCACCC 59.109 50.000 15.27 0.00 46.97 4.61
1318 2583 1.308069 AAATAGCACAGCTGCACCCG 61.308 55.000 15.27 0.00 46.97 5.28
1319 2584 3.687321 ATAGCACAGCTGCACCCGG 62.687 63.158 15.27 0.00 46.97 5.73
1330 2595 2.122813 CACCCGGGCCCTCTCTAT 60.123 66.667 24.08 0.00 0.00 1.98
1331 2596 2.201771 ACCCGGGCCCTCTCTATC 59.798 66.667 24.08 0.00 0.00 2.08
1332 2597 2.404750 ACCCGGGCCCTCTCTATCT 61.405 63.158 24.08 0.00 0.00 1.98
1333 2598 1.072505 ACCCGGGCCCTCTCTATCTA 61.073 60.000 24.08 0.00 0.00 1.98
1334 2599 0.323908 CCCGGGCCCTCTCTATCTAG 60.324 65.000 22.43 0.00 0.00 2.43
1335 2600 0.968393 CCGGGCCCTCTCTATCTAGC 60.968 65.000 22.43 0.00 0.00 3.42
1336 2601 0.968393 CGGGCCCTCTCTATCTAGCC 60.968 65.000 22.43 0.00 39.73 3.93
1337 2602 0.115349 GGGCCCTCTCTATCTAGCCA 59.885 60.000 17.04 0.00 42.29 4.75
1338 2603 1.273552 GGGCCCTCTCTATCTAGCCAT 60.274 57.143 17.04 0.00 42.29 4.40
1339 2604 2.107366 GGCCCTCTCTATCTAGCCATC 58.893 57.143 0.00 0.00 40.20 3.51
1340 2605 2.107366 GCCCTCTCTATCTAGCCATCC 58.893 57.143 0.00 0.00 0.00 3.51
1341 2606 2.558575 GCCCTCTCTATCTAGCCATCCA 60.559 54.545 0.00 0.00 0.00 3.41
1342 2607 3.885333 GCCCTCTCTATCTAGCCATCCAT 60.885 52.174 0.00 0.00 0.00 3.41
1343 2608 4.360889 CCCTCTCTATCTAGCCATCCATT 58.639 47.826 0.00 0.00 0.00 3.16
1344 2609 4.405358 CCCTCTCTATCTAGCCATCCATTC 59.595 50.000 0.00 0.00 0.00 2.67
1345 2610 5.271598 CCTCTCTATCTAGCCATCCATTCT 58.728 45.833 0.00 0.00 0.00 2.40
1346 2611 5.127519 CCTCTCTATCTAGCCATCCATTCTG 59.872 48.000 0.00 0.00 0.00 3.02
1347 2612 4.465660 TCTCTATCTAGCCATCCATTCTGC 59.534 45.833 0.00 0.00 0.00 4.26
1348 2613 2.469274 ATCTAGCCATCCATTCTGCG 57.531 50.000 0.00 0.00 0.00 5.18
1349 2614 0.250038 TCTAGCCATCCATTCTGCGC 60.250 55.000 0.00 0.00 0.00 6.09
1350 2615 0.533531 CTAGCCATCCATTCTGCGCA 60.534 55.000 10.98 10.98 0.00 6.09
1351 2616 0.109153 TAGCCATCCATTCTGCGCAT 59.891 50.000 12.24 0.00 0.00 4.73
1352 2617 1.170919 AGCCATCCATTCTGCGCATC 61.171 55.000 12.24 0.00 0.00 3.91
1353 2618 1.572941 CCATCCATTCTGCGCATCG 59.427 57.895 12.24 0.00 0.00 3.84
1365 2630 2.399217 GCATCGCGATTCGTGCAA 59.601 55.556 23.50 0.00 41.45 4.08
1366 2631 1.225991 GCATCGCGATTCGTGCAAA 60.226 52.632 23.50 0.00 41.45 3.68
1367 2632 1.455908 GCATCGCGATTCGTGCAAAC 61.456 55.000 23.50 1.07 41.45 2.93
1368 2633 0.179227 CATCGCGATTCGTGCAAACA 60.179 50.000 21.14 0.00 37.28 2.83
1369 2634 0.179225 ATCGCGATTCGTGCAAACAC 60.179 50.000 17.62 0.00 43.76 3.32
1426 2691 5.467902 TTTGAAGTTCAAACATTTGCAGC 57.532 34.783 23.91 0.00 41.02 5.25
1427 2692 3.114809 TGAAGTTCAAACATTTGCAGCG 58.885 40.909 2.20 0.00 38.05 5.18
1428 2693 2.869233 AGTTCAAACATTTGCAGCGT 57.131 40.000 0.00 0.00 38.05 5.07
1429 2694 3.980646 AGTTCAAACATTTGCAGCGTA 57.019 38.095 0.00 0.00 38.05 4.42
1430 2695 3.888934 AGTTCAAACATTTGCAGCGTAG 58.111 40.909 0.00 0.00 38.05 3.51
1431 2696 2.330231 TCAAACATTTGCAGCGTAGC 57.670 45.000 0.00 0.00 46.28 3.58
1452 2717 9.522804 CGTAGCAAAGTTTTCTATCTAGAATCT 57.477 33.333 0.00 0.00 41.52 2.40
1570 2835 8.964533 TTATCCTAGATTCTAGATGGAAAGCT 57.035 34.615 20.14 0.80 0.00 3.74
1571 2836 7.870426 ATCCTAGATTCTAGATGGAAAGCTT 57.130 36.000 20.14 0.00 0.00 3.74
1572 2837 7.682787 TCCTAGATTCTAGATGGAAAGCTTT 57.317 36.000 20.14 12.53 0.00 3.51
1573 2838 7.504403 TCCTAGATTCTAGATGGAAAGCTTTG 58.496 38.462 18.30 0.00 0.00 2.77
1574 2839 6.204495 CCTAGATTCTAGATGGAAAGCTTTGC 59.796 42.308 22.47 22.47 0.00 3.68
1575 2840 4.886489 AGATTCTAGATGGAAAGCTTTGCC 59.114 41.667 25.53 20.40 0.00 4.52
1576 2841 3.719268 TCTAGATGGAAAGCTTTGCCA 57.281 42.857 25.53 24.47 35.91 4.92
1577 2842 3.347216 TCTAGATGGAAAGCTTTGCCAC 58.653 45.455 25.53 18.80 33.93 5.01
1578 2843 0.883833 AGATGGAAAGCTTTGCCACG 59.116 50.000 25.53 0.00 33.93 4.94
1579 2844 0.733909 GATGGAAAGCTTTGCCACGC 60.734 55.000 25.53 17.52 33.93 5.34
1580 2845 1.181098 ATGGAAAGCTTTGCCACGCT 61.181 50.000 25.53 11.04 38.30 5.07
1581 2846 1.372128 GGAAAGCTTTGCCACGCTG 60.372 57.895 18.30 0.00 36.45 5.18
1582 2847 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
1583 2848 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
1589 2854 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
1590 2855 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
1591 2856 1.950630 GCCACGCTGCAAAGGTTTG 60.951 57.895 0.00 0.00 41.03 2.93
1592 2857 1.732917 CCACGCTGCAAAGGTTTGA 59.267 52.632 6.63 0.00 40.55 2.69
1593 2858 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69
1594 2859 1.199624 CACGCTGCAAAGGTTTGAAC 58.800 50.000 6.63 0.00 40.55 3.18
1595 2860 1.102978 ACGCTGCAAAGGTTTGAACT 58.897 45.000 6.63 0.00 40.55 3.01
1596 2861 1.476488 ACGCTGCAAAGGTTTGAACTT 59.524 42.857 6.63 0.00 40.55 2.66
1597 2862 2.119457 CGCTGCAAAGGTTTGAACTTC 58.881 47.619 6.63 0.00 40.55 3.01
1598 2863 2.479389 CGCTGCAAAGGTTTGAACTTCA 60.479 45.455 6.63 0.00 40.55 3.02
1599 2864 3.520569 GCTGCAAAGGTTTGAACTTCAA 58.479 40.909 6.63 0.00 40.55 2.69
1600 2865 3.553105 GCTGCAAAGGTTTGAACTTCAAG 59.447 43.478 6.63 0.00 40.55 3.02
1601 2866 4.677779 GCTGCAAAGGTTTGAACTTCAAGA 60.678 41.667 6.63 0.00 40.55 3.02
1602 2867 4.743493 TGCAAAGGTTTGAACTTCAAGAC 58.257 39.130 6.63 6.37 40.55 3.01
1603 2868 4.219507 TGCAAAGGTTTGAACTTCAAGACA 59.780 37.500 6.63 0.00 40.55 3.41
1604 2869 5.105392 TGCAAAGGTTTGAACTTCAAGACAT 60.105 36.000 6.63 2.37 40.55 3.06
1605 2870 5.460091 GCAAAGGTTTGAACTTCAAGACATC 59.540 40.000 6.63 0.00 40.55 3.06
1606 2871 6.681368 GCAAAGGTTTGAACTTCAAGACATCT 60.681 38.462 6.63 0.00 40.55 2.90
1607 2872 7.260603 CAAAGGTTTGAACTTCAAGACATCTT 58.739 34.615 4.43 0.37 40.55 2.40
1608 2873 7.410120 AAGGTTTGAACTTCAAGACATCTTT 57.590 32.000 4.43 0.00 37.70 2.52
1609 2874 7.410120 AGGTTTGAACTTCAAGACATCTTTT 57.590 32.000 4.43 0.00 37.70 2.27
1610 2875 8.519799 AGGTTTGAACTTCAAGACATCTTTTA 57.480 30.769 4.43 0.00 37.70 1.52
1611 2876 9.136323 AGGTTTGAACTTCAAGACATCTTTTAT 57.864 29.630 4.43 0.00 37.70 1.40
1612 2877 9.185192 GGTTTGAACTTCAAGACATCTTTTATG 57.815 33.333 4.43 0.00 37.70 1.90
1613 2878 9.736023 GTTTGAACTTCAAGACATCTTTTATGT 57.264 29.630 4.43 0.00 37.70 2.29
1614 2879 9.734620 TTTGAACTTCAAGACATCTTTTATGTG 57.265 29.630 4.43 0.00 37.70 3.21
1615 2880 8.675705 TGAACTTCAAGACATCTTTTATGTGA 57.324 30.769 0.00 0.00 33.11 3.58
1616 2881 8.777413 TGAACTTCAAGACATCTTTTATGTGAG 58.223 33.333 0.00 0.00 33.11 3.51
1617 2882 8.908786 AACTTCAAGACATCTTTTATGTGAGA 57.091 30.769 0.00 0.00 33.11 3.27
1618 2883 8.545229 ACTTCAAGACATCTTTTATGTGAGAG 57.455 34.615 0.00 0.00 33.11 3.20
1619 2884 8.370940 ACTTCAAGACATCTTTTATGTGAGAGA 58.629 33.333 0.00 0.00 33.11 3.10
1620 2885 9.212641 CTTCAAGACATCTTTTATGTGAGAGAA 57.787 33.333 0.00 0.00 33.11 2.87
1621 2886 9.559732 TTCAAGACATCTTTTATGTGAGAGAAA 57.440 29.630 0.00 0.00 33.11 2.52
1622 2887 8.993121 TCAAGACATCTTTTATGTGAGAGAAAC 58.007 33.333 0.00 0.00 33.11 2.78
1623 2888 8.777413 CAAGACATCTTTTATGTGAGAGAAACA 58.223 33.333 0.00 0.00 33.11 2.83
1624 2889 8.908786 AGACATCTTTTATGTGAGAGAAACAA 57.091 30.769 0.00 0.00 31.52 2.83
1625 2890 9.342308 AGACATCTTTTATGTGAGAGAAACAAA 57.658 29.630 0.00 0.00 31.52 2.83
1626 2891 9.950680 GACATCTTTTATGTGAGAGAAACAAAA 57.049 29.630 0.00 0.00 31.52 2.44
1661 2926 8.829514 TTTCATACGAAAAGTTAGTTGTGTTG 57.170 30.769 0.00 0.00 38.19 3.33
1662 2927 6.423862 TCATACGAAAAGTTAGTTGTGTTGC 58.576 36.000 0.00 0.00 0.00 4.17
1663 2928 4.688511 ACGAAAAGTTAGTTGTGTTGCA 57.311 36.364 0.00 0.00 0.00 4.08
1664 2929 4.408694 ACGAAAAGTTAGTTGTGTTGCAC 58.591 39.130 0.00 0.00 34.56 4.57
1665 2930 4.083217 ACGAAAAGTTAGTTGTGTTGCACA 60.083 37.500 0.00 0.00 43.02 4.57
1666 2931 4.495472 CGAAAAGTTAGTTGTGTTGCACAG 59.505 41.667 2.17 0.00 45.39 3.66
1667 2932 5.636837 GAAAAGTTAGTTGTGTTGCACAGA 58.363 37.500 2.17 0.00 45.39 3.41
1668 2933 5.835113 AAAGTTAGTTGTGTTGCACAGAT 57.165 34.783 2.17 0.00 45.39 2.90
1669 2934 5.424121 AAGTTAGTTGTGTTGCACAGATC 57.576 39.130 2.17 0.00 45.39 2.75
1670 2935 4.708177 AGTTAGTTGTGTTGCACAGATCT 58.292 39.130 2.17 0.00 45.39 2.75
1671 2936 5.126067 AGTTAGTTGTGTTGCACAGATCTT 58.874 37.500 0.00 0.00 45.39 2.40
1672 2937 6.288294 AGTTAGTTGTGTTGCACAGATCTTA 58.712 36.000 0.00 0.00 45.39 2.10
1673 2938 6.765989 AGTTAGTTGTGTTGCACAGATCTTAA 59.234 34.615 0.00 0.00 45.39 1.85
1674 2939 7.282224 AGTTAGTTGTGTTGCACAGATCTTAAA 59.718 33.333 0.00 0.00 45.39 1.52
1675 2940 6.064846 AGTTGTGTTGCACAGATCTTAAAG 57.935 37.500 0.00 0.00 45.39 1.85
1676 2941 4.488126 TGTGTTGCACAGATCTTAAAGC 57.512 40.909 0.00 0.00 39.62 3.51
1677 2942 3.882288 TGTGTTGCACAGATCTTAAAGCA 59.118 39.130 0.00 0.00 39.62 3.91
1678 2943 4.337836 TGTGTTGCACAGATCTTAAAGCAA 59.662 37.500 13.71 13.71 39.62 3.91
1679 2944 5.009911 TGTGTTGCACAGATCTTAAAGCAAT 59.990 36.000 18.21 0.00 42.90 3.56
1680 2945 6.206438 TGTGTTGCACAGATCTTAAAGCAATA 59.794 34.615 18.21 14.67 42.90 1.90
1681 2946 7.094248 TGTGTTGCACAGATCTTAAAGCAATAT 60.094 33.333 18.21 0.00 42.90 1.28
1682 2947 7.756722 GTGTTGCACAGATCTTAAAGCAATATT 59.243 33.333 18.21 0.00 42.90 1.28
1683 2948 7.756272 TGTTGCACAGATCTTAAAGCAATATTG 59.244 33.333 18.21 11.27 42.90 1.90
1684 2949 6.798482 TGCACAGATCTTAAAGCAATATTGG 58.202 36.000 17.02 0.00 0.00 3.16
1685 2950 6.602803 TGCACAGATCTTAAAGCAATATTGGA 59.397 34.615 17.02 5.09 0.00 3.53
1686 2951 6.914757 GCACAGATCTTAAAGCAATATTGGAC 59.085 38.462 17.02 1.44 0.00 4.02
1687 2952 7.415541 GCACAGATCTTAAAGCAATATTGGACA 60.416 37.037 17.02 0.00 0.00 4.02
1688 2953 8.461222 CACAGATCTTAAAGCAATATTGGACAA 58.539 33.333 17.02 0.00 0.00 3.18
1689 2954 8.462016 ACAGATCTTAAAGCAATATTGGACAAC 58.538 33.333 17.02 0.00 0.00 3.32
1690 2955 7.917505 CAGATCTTAAAGCAATATTGGACAACC 59.082 37.037 17.02 0.00 0.00 3.77
1691 2956 7.615365 AGATCTTAAAGCAATATTGGACAACCA 59.385 33.333 17.02 0.00 45.34 3.67
1701 2966 1.285280 TGGACAACCAGGATACCAGG 58.715 55.000 0.00 0.00 41.77 4.45
1702 2967 0.546598 GGACAACCAGGATACCAGGG 59.453 60.000 0.00 1.34 36.62 4.45
1703 2968 0.107165 GACAACCAGGATACCAGGGC 60.107 60.000 0.00 0.00 36.62 5.19
1704 2969 1.227383 CAACCAGGATACCAGGGCC 59.773 63.158 0.00 0.00 36.62 5.80
1705 2970 2.375345 AACCAGGATACCAGGGCCG 61.375 63.158 0.00 0.00 36.62 6.13
1706 2971 3.560251 CCAGGATACCAGGGCCGG 61.560 72.222 12.04 12.04 37.17 6.13
1707 2972 3.560251 CAGGATACCAGGGCCGGG 61.560 72.222 22.02 22.02 37.17 5.73
1708 2973 4.900259 AGGATACCAGGGCCGGGG 62.900 72.222 26.86 20.58 37.17 5.73
1710 2975 3.873812 GATACCAGGGCCGGGGTG 61.874 72.222 26.86 5.52 38.06 4.61
1720 2985 4.335647 CCGGGGTGCAGCTGTTCT 62.336 66.667 16.64 0.00 0.00 3.01
1721 2986 2.662596 CGGGGTGCAGCTGTTCTA 59.337 61.111 16.64 0.00 0.00 2.10
1722 2987 1.003839 CGGGGTGCAGCTGTTCTAA 60.004 57.895 16.64 0.00 0.00 2.10
1723 2988 0.605319 CGGGGTGCAGCTGTTCTAAA 60.605 55.000 16.64 0.00 0.00 1.85
1724 2989 1.616159 GGGGTGCAGCTGTTCTAAAA 58.384 50.000 16.64 0.00 0.00 1.52
1725 2990 1.960689 GGGGTGCAGCTGTTCTAAAAA 59.039 47.619 16.64 0.00 0.00 1.94
1726 2991 2.562738 GGGGTGCAGCTGTTCTAAAAAT 59.437 45.455 16.64 0.00 0.00 1.82
1727 2992 3.367395 GGGGTGCAGCTGTTCTAAAAATC 60.367 47.826 16.64 0.00 0.00 2.17
1728 2993 3.367395 GGGTGCAGCTGTTCTAAAAATCC 60.367 47.826 16.64 3.45 0.00 3.01
1729 2994 3.255642 GGTGCAGCTGTTCTAAAAATCCA 59.744 43.478 16.64 0.00 0.00 3.41
1730 2995 4.229876 GTGCAGCTGTTCTAAAAATCCAC 58.770 43.478 16.64 6.27 0.00 4.02
1731 2996 3.058293 TGCAGCTGTTCTAAAAATCCACG 60.058 43.478 16.64 0.00 0.00 4.94
1732 2997 3.058224 GCAGCTGTTCTAAAAATCCACGT 60.058 43.478 16.64 0.00 0.00 4.49
1733 2998 4.712763 CAGCTGTTCTAAAAATCCACGTC 58.287 43.478 5.25 0.00 0.00 4.34
1734 2999 3.751698 AGCTGTTCTAAAAATCCACGTCC 59.248 43.478 0.00 0.00 0.00 4.79
1735 3000 3.119955 GCTGTTCTAAAAATCCACGTCCC 60.120 47.826 0.00 0.00 0.00 4.46
1736 3001 4.069304 CTGTTCTAAAAATCCACGTCCCA 58.931 43.478 0.00 0.00 0.00 4.37
1737 3002 4.069304 TGTTCTAAAAATCCACGTCCCAG 58.931 43.478 0.00 0.00 0.00 4.45
1738 3003 3.343941 TCTAAAAATCCACGTCCCAGG 57.656 47.619 0.00 0.00 0.00 4.45
1739 3004 2.026636 TCTAAAAATCCACGTCCCAGGG 60.027 50.000 0.00 0.00 0.00 4.45
1740 3005 0.251608 AAAAATCCACGTCCCAGGGG 60.252 55.000 5.33 0.92 35.56 4.79
1741 3006 2.781431 AAAATCCACGTCCCAGGGGC 62.781 60.000 5.33 1.36 33.82 5.80
1779 3044 3.210528 GGCTGATCTGCTGCTGCC 61.211 66.667 21.99 3.47 40.85 4.85
1780 3045 2.124653 GCTGATCTGCTGCTGCCT 60.125 61.111 16.60 0.00 38.32 4.75
1782 3047 1.883544 CTGATCTGCTGCTGCCTCG 60.884 63.158 13.47 1.91 38.71 4.63
1825 3093 1.293963 CCATCTGTCAGTGCGTGTGG 61.294 60.000 0.00 0.00 0.00 4.17
1861 3129 3.133901 TGTGTAGTGGACGCCATGAATAT 59.866 43.478 0.00 0.00 37.81 1.28
1867 3135 3.058016 GTGGACGCCATGAATATGAATGG 60.058 47.826 11.11 11.11 45.25 3.16
1870 3138 4.320494 GGACGCCATGAATATGAATGGAAC 60.320 45.833 17.32 9.15 45.29 3.62
1891 3159 3.250744 CGAAATCAGAGTTCTTGCGGTA 58.749 45.455 8.88 0.00 0.00 4.02
1904 3172 8.958119 AGTTCTTGCGGTATTAATTATCTTGA 57.042 30.769 0.00 0.00 0.00 3.02
1905 3173 9.561069 AGTTCTTGCGGTATTAATTATCTTGAT 57.439 29.630 0.00 0.00 0.00 2.57
1906 3174 9.599322 GTTCTTGCGGTATTAATTATCTTGATG 57.401 33.333 0.00 0.00 0.00 3.07
1907 3175 7.806690 TCTTGCGGTATTAATTATCTTGATGC 58.193 34.615 0.00 0.00 0.00 3.91
1908 3176 7.443879 TCTTGCGGTATTAATTATCTTGATGCA 59.556 33.333 0.00 0.00 0.00 3.96
1909 3177 7.686438 TGCGGTATTAATTATCTTGATGCAT 57.314 32.000 0.00 0.00 0.00 3.96
1910 3178 7.751732 TGCGGTATTAATTATCTTGATGCATC 58.248 34.615 20.14 20.14 0.00 3.91
1911 3179 7.607607 TGCGGTATTAATTATCTTGATGCATCT 59.392 33.333 26.32 9.68 0.00 2.90
1912 3180 8.119226 GCGGTATTAATTATCTTGATGCATCTC 58.881 37.037 26.32 4.13 0.00 2.75
1917 3185 9.887629 ATTAATTATCTTGATGCATCTCTCGAT 57.112 29.630 26.32 21.15 0.00 3.59
1919 3187 4.603989 ATCTTGATGCATCTCTCGATGT 57.396 40.909 26.32 3.22 46.96 3.06
1920 3188 3.714391 TCTTGATGCATCTCTCGATGTG 58.286 45.455 26.32 7.05 46.96 3.21
1921 3189 3.131755 TCTTGATGCATCTCTCGATGTGT 59.868 43.478 26.32 0.00 46.96 3.72
1922 3190 3.531934 TGATGCATCTCTCGATGTGTT 57.468 42.857 26.32 0.00 46.96 3.32
1923 3191 3.865446 TGATGCATCTCTCGATGTGTTT 58.135 40.909 26.32 0.00 46.96 2.83
1924 3192 3.867493 TGATGCATCTCTCGATGTGTTTC 59.133 43.478 26.32 0.00 46.96 2.78
1925 3193 3.599730 TGCATCTCTCGATGTGTTTCT 57.400 42.857 4.47 0.00 46.96 2.52
1926 3194 4.718940 TGCATCTCTCGATGTGTTTCTA 57.281 40.909 4.47 0.00 46.96 2.10
1930 3198 6.263168 TGCATCTCTCGATGTGTTTCTATCTA 59.737 38.462 4.47 0.00 46.96 1.98
1955 3223 5.289083 AGCTTGTTAAAATTTTCCCAGCA 57.711 34.783 19.78 6.88 0.00 4.41
1965 3233 7.500720 AAAATTTTCCCAGCAAGAAAGATTG 57.499 32.000 0.00 0.00 34.84 2.67
1970 3238 3.863142 CCAGCAAGAAAGATTGGGAAG 57.137 47.619 0.00 0.00 0.00 3.46
1978 3249 7.836183 AGCAAGAAAGATTGGGAAGTAATGTAT 59.164 33.333 0.00 0.00 0.00 2.29
2017 3288 7.016465 TGGGAAAATTTTCATGAACCAATCTCT 59.984 33.333 27.53 0.00 38.92 3.10
2024 3295 4.259356 TCATGAACCAATCTCTGAGCAAG 58.741 43.478 0.00 0.00 0.00 4.01
2025 3296 2.430465 TGAACCAATCTCTGAGCAAGC 58.570 47.619 0.00 0.00 0.00 4.01
2051 3322 2.047061 AGGAAACTGCTACAGGTGTGA 58.953 47.619 0.00 0.00 41.13 3.58
2052 3323 2.037772 AGGAAACTGCTACAGGTGTGAG 59.962 50.000 0.00 0.00 41.13 3.51
2055 3326 1.704641 ACTGCTACAGGTGTGAGTGA 58.295 50.000 0.00 0.00 35.51 3.41
2056 3327 2.251818 ACTGCTACAGGTGTGAGTGAT 58.748 47.619 0.00 0.00 35.51 3.06
2066 3337 3.780294 AGGTGTGAGTGATATTTGGGCTA 59.220 43.478 0.00 0.00 0.00 3.93
2068 3339 4.335594 GGTGTGAGTGATATTTGGGCTAAC 59.664 45.833 0.00 0.00 0.00 2.34
2077 3348 6.974622 GTGATATTTGGGCTAACAGAAACATG 59.025 38.462 0.00 0.00 0.00 3.21
2078 3349 3.658757 TTTGGGCTAACAGAAACATGC 57.341 42.857 0.00 0.00 0.00 4.06
2099 3393 3.944015 GCTGCATTACTTCAGGAAGACAT 59.056 43.478 15.51 4.38 40.79 3.06
2103 3397 5.412594 TGCATTACTTCAGGAAGACATGAAC 59.587 40.000 15.51 6.15 40.95 3.18
2110 3404 3.830178 TCAGGAAGACATGAACGAACCTA 59.170 43.478 0.00 0.00 33.86 3.08
2113 3407 1.992170 AGACATGAACGAACCTACGC 58.008 50.000 0.00 0.00 36.70 4.42
2125 3419 0.739813 ACCTACGCGCCTCATTGTTC 60.740 55.000 5.73 0.00 0.00 3.18
2141 3435 3.435105 TGTTCGCTGCTTGTGAAATTT 57.565 38.095 7.60 0.00 45.38 1.82
2143 3437 4.286910 TGTTCGCTGCTTGTGAAATTTAC 58.713 39.130 7.60 0.00 45.38 2.01
2147 3441 4.083855 TCGCTGCTTGTGAAATTTACTGAG 60.084 41.667 0.00 0.00 31.45 3.35
2156 3450 9.831737 CTTGTGAAATTTACTGAGGTAGAATTG 57.168 33.333 0.00 0.00 0.00 2.32
2170 3464 3.502191 AGAATTGCGTGTGTGTGTTTT 57.498 38.095 0.00 0.00 0.00 2.43
2171 3465 3.843999 AGAATTGCGTGTGTGTGTTTTT 58.156 36.364 0.00 0.00 0.00 1.94
2211 3505 1.581934 TTTCTGTCTCAACCACGCAG 58.418 50.000 0.00 0.00 0.00 5.18
2212 3506 0.880278 TTCTGTCTCAACCACGCAGC 60.880 55.000 0.00 0.00 0.00 5.25
2213 3507 2.661537 TGTCTCAACCACGCAGCG 60.662 61.111 14.82 14.82 0.00 5.18
2214 3508 4.077188 GTCTCAACCACGCAGCGC 62.077 66.667 16.61 0.00 0.00 5.92
2215 3509 4.600576 TCTCAACCACGCAGCGCA 62.601 61.111 16.61 0.00 0.00 6.09
2216 3510 4.081030 CTCAACCACGCAGCGCAG 62.081 66.667 16.61 9.12 0.00 5.18
2239 3533 3.745975 CGTGCAGAGGTCAAAATGAGTAA 59.254 43.478 0.00 0.00 0.00 2.24
2242 3536 4.041567 TGCAGAGGTCAAAATGAGTAAGGA 59.958 41.667 0.00 0.00 0.00 3.36
2255 3549 7.537596 AATGAGTAAGGAGATACTGATCTGG 57.462 40.000 4.49 0.00 42.80 3.86
2258 3552 4.586841 AGTAAGGAGATACTGATCTGGTGC 59.413 45.833 4.49 0.00 42.80 5.01
2262 3556 2.362397 GAGATACTGATCTGGTGCGGAA 59.638 50.000 4.49 0.00 42.80 4.30
2265 3559 1.742761 ACTGATCTGGTGCGGAATTG 58.257 50.000 4.49 0.00 0.00 2.32
2266 3560 0.379669 CTGATCTGGTGCGGAATTGC 59.620 55.000 0.00 0.00 0.00 3.56
2267 3561 0.322366 TGATCTGGTGCGGAATTGCA 60.322 50.000 0.00 0.00 43.95 4.08
2277 3571 4.728917 TGCGGAATTGCATTTCTTTTTG 57.271 36.364 18.11 7.23 40.62 2.44
2278 3572 3.497640 TGCGGAATTGCATTTCTTTTTGG 59.502 39.130 18.11 5.48 40.62 3.28
2279 3573 3.498018 GCGGAATTGCATTTCTTTTTGGT 59.502 39.130 18.11 0.00 34.15 3.67
2280 3574 4.024133 GCGGAATTGCATTTCTTTTTGGTT 60.024 37.500 18.11 0.00 34.15 3.67
2281 3575 5.178438 GCGGAATTGCATTTCTTTTTGGTTA 59.822 36.000 18.11 0.00 34.15 2.85
2282 3576 6.128309 GCGGAATTGCATTTCTTTTTGGTTAT 60.128 34.615 18.11 0.00 34.15 1.89
2283 3577 7.235777 CGGAATTGCATTTCTTTTTGGTTATG 58.764 34.615 18.11 0.00 0.00 1.90
2284 3578 7.095271 CGGAATTGCATTTCTTTTTGGTTATGT 60.095 33.333 18.11 0.00 0.00 2.29
2285 3579 8.016801 GGAATTGCATTTCTTTTTGGTTATGTG 58.983 33.333 18.11 0.00 0.00 3.21
2286 3580 5.921004 TGCATTTCTTTTTGGTTATGTGC 57.079 34.783 0.00 0.00 0.00 4.57
2287 3581 5.363101 TGCATTTCTTTTTGGTTATGTGCA 58.637 33.333 0.00 0.00 36.62 4.57
2288 3582 5.466058 TGCATTTCTTTTTGGTTATGTGCAG 59.534 36.000 0.00 0.00 34.37 4.41
2289 3583 5.695816 GCATTTCTTTTTGGTTATGTGCAGA 59.304 36.000 0.00 0.00 0.00 4.26
2290 3584 6.202570 GCATTTCTTTTTGGTTATGTGCAGAA 59.797 34.615 0.00 0.00 0.00 3.02
2291 3585 7.254727 GCATTTCTTTTTGGTTATGTGCAGAAA 60.255 33.333 0.00 0.00 34.44 2.52
2292 3586 8.776470 CATTTCTTTTTGGTTATGTGCAGAAAT 58.224 29.630 0.00 0.00 39.29 2.17
2293 3587 7.712264 TTCTTTTTGGTTATGTGCAGAAATG 57.288 32.000 0.00 0.00 0.00 2.32
2294 3588 6.815089 TCTTTTTGGTTATGTGCAGAAATGT 58.185 32.000 0.00 0.00 0.00 2.71
2295 3589 7.271511 TCTTTTTGGTTATGTGCAGAAATGTT 58.728 30.769 0.00 0.00 0.00 2.71
2296 3590 6.841443 TTTTGGTTATGTGCAGAAATGTTG 57.159 33.333 0.00 0.00 0.00 3.33
2297 3591 5.528043 TTGGTTATGTGCAGAAATGTTGT 57.472 34.783 0.00 0.00 0.00 3.32
2298 3592 5.119931 TGGTTATGTGCAGAAATGTTGTC 57.880 39.130 0.00 0.00 0.00 3.18
2299 3593 4.826733 TGGTTATGTGCAGAAATGTTGTCT 59.173 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.592148 ATAGATTCCCGTCGACTCGC 59.408 55.000 14.70 0.00 0.00 5.03
92 94 2.426024 CCGATCCTCCTTAAGTTCGTCA 59.574 50.000 0.97 0.00 30.69 4.35
150 152 0.608130 TAGAGGCGACACTTGTGCAT 59.392 50.000 0.00 0.00 31.93 3.96
197 1401 5.818136 ATATGTCAAGTGAATGGAAACGG 57.182 39.130 0.00 0.00 0.00 4.44
208 1412 6.531594 TCGAGACAAAGCTAATATGTCAAGTG 59.468 38.462 18.34 8.99 44.55 3.16
438 1642 0.846427 AGGGGAATCCTTGTGCCTCA 60.846 55.000 0.00 0.00 45.47 3.86
506 1710 2.569059 CTGATCTCCATCGGCAAACAT 58.431 47.619 0.00 0.00 0.00 2.71
593 1797 4.591924 TCGTAGGGATTTATTTCCTCTCCC 59.408 45.833 0.00 0.00 45.01 4.30
626 1830 1.453762 GGCATTCTGAGGATGCTGGC 61.454 60.000 23.87 5.24 40.82 4.85
641 1845 1.371595 GCATTTGAAATTGCCGGCAT 58.628 45.000 33.25 16.98 32.66 4.40
697 1919 6.627395 AAATTTGTGTGTTCCTTCGTCATA 57.373 33.333 0.00 0.00 0.00 2.15
706 1932 5.988561 TCTTGCCATAAAATTTGTGTGTTCC 59.011 36.000 1.99 0.00 0.00 3.62
715 1941 7.595604 CCATTTGCTTTCTTGCCATAAAATTT 58.404 30.769 0.00 0.00 0.00 1.82
722 1948 1.673626 CGCCATTTGCTTTCTTGCCAT 60.674 47.619 0.00 0.00 38.05 4.40
779 2008 0.461870 CATCGTCCAATGAGGCGGAA 60.462 55.000 0.00 0.00 37.46 4.30
789 2019 2.416836 GGTCTCGAATGTCATCGTCCAA 60.417 50.000 0.00 0.00 43.19 3.53
838 2070 2.443632 TGGACGGTCAGGATCTAGATCT 59.556 50.000 27.65 13.96 37.92 2.75
843 2076 3.181479 CGAAAATGGACGGTCAGGATCTA 60.181 47.826 10.76 0.00 0.00 1.98
912 2147 1.033574 GTCGGGAGTGAGGATCGAAT 58.966 55.000 0.00 0.00 38.61 3.34
993 2257 1.819632 GTGGCCGGACATGATGGTC 60.820 63.158 16.47 0.00 37.06 4.02
1165 2430 2.786539 AAGATCTTGAGCACGCCGCA 62.787 55.000 7.30 0.00 46.13 5.69
1313 2578 2.122813 ATAGAGAGGGCCCGGGTG 60.123 66.667 24.63 0.00 0.00 4.61
1314 2579 1.072505 TAGATAGAGAGGGCCCGGGT 61.073 60.000 24.63 4.33 0.00 5.28
1315 2580 0.323908 CTAGATAGAGAGGGCCCGGG 60.324 65.000 19.09 19.09 0.00 5.73
1316 2581 0.968393 GCTAGATAGAGAGGGCCCGG 60.968 65.000 18.44 0.00 0.00 5.73
1317 2582 0.968393 GGCTAGATAGAGAGGGCCCG 60.968 65.000 18.44 0.00 34.19 6.13
1318 2583 0.115349 TGGCTAGATAGAGAGGGCCC 59.885 60.000 16.46 16.46 38.89 5.80
1319 2584 2.107366 GATGGCTAGATAGAGAGGGCC 58.893 57.143 0.00 0.00 39.93 5.80
1320 2585 2.107366 GGATGGCTAGATAGAGAGGGC 58.893 57.143 0.00 0.00 0.00 5.19
1321 2586 3.464720 TGGATGGCTAGATAGAGAGGG 57.535 52.381 0.00 0.00 0.00 4.30
1322 2587 5.127519 CAGAATGGATGGCTAGATAGAGAGG 59.872 48.000 0.00 0.00 0.00 3.69
1323 2588 5.394443 GCAGAATGGATGGCTAGATAGAGAG 60.394 48.000 0.00 0.00 35.86 3.20
1324 2589 4.465660 GCAGAATGGATGGCTAGATAGAGA 59.534 45.833 0.00 0.00 35.86 3.10
1325 2590 4.677514 CGCAGAATGGATGGCTAGATAGAG 60.678 50.000 0.00 0.00 35.86 2.43
1326 2591 3.194329 CGCAGAATGGATGGCTAGATAGA 59.806 47.826 0.00 0.00 35.86 1.98
1327 2592 3.519579 CGCAGAATGGATGGCTAGATAG 58.480 50.000 0.00 0.00 35.86 2.08
1328 2593 2.354103 GCGCAGAATGGATGGCTAGATA 60.354 50.000 0.30 0.00 35.86 1.98
1329 2594 1.610102 GCGCAGAATGGATGGCTAGAT 60.610 52.381 0.30 0.00 35.86 1.98
1330 2595 0.250038 GCGCAGAATGGATGGCTAGA 60.250 55.000 0.30 0.00 35.86 2.43
1331 2596 0.533531 TGCGCAGAATGGATGGCTAG 60.534 55.000 5.66 0.00 35.86 3.42
1332 2597 0.109153 ATGCGCAGAATGGATGGCTA 59.891 50.000 18.32 0.00 35.86 3.93
1333 2598 1.152819 ATGCGCAGAATGGATGGCT 60.153 52.632 18.32 0.00 35.86 4.75
1334 2599 1.285023 GATGCGCAGAATGGATGGC 59.715 57.895 18.32 0.00 35.86 4.40
1335 2600 1.572941 CGATGCGCAGAATGGATGG 59.427 57.895 18.32 0.00 35.86 3.51
1348 2613 1.225991 TTTGCACGAATCGCGATGC 60.226 52.632 24.47 23.10 44.57 3.91
1349 2614 0.179227 TGTTTGCACGAATCGCGATG 60.179 50.000 24.47 13.82 44.57 3.84
1350 2615 0.179225 GTGTTTGCACGAATCGCGAT 60.179 50.000 17.62 17.62 44.57 4.58
1351 2616 1.203065 GTGTTTGCACGAATCGCGA 59.797 52.632 13.09 13.09 44.57 5.87
1402 2667 6.313252 GCTGCAAATGTTTGAACTTCAAAAA 58.687 32.000 16.79 13.00 46.53 1.94
1403 2668 5.445673 CGCTGCAAATGTTTGAACTTCAAAA 60.446 36.000 16.79 9.19 46.53 2.44
1404 2669 4.032672 CGCTGCAAATGTTTGAACTTCAAA 59.967 37.500 12.12 12.12 43.37 2.69
1405 2670 3.551082 CGCTGCAAATGTTTGAACTTCAA 59.449 39.130 9.53 0.00 40.55 2.69
1406 2671 3.114809 CGCTGCAAATGTTTGAACTTCA 58.885 40.909 9.53 0.00 40.55 3.02
1407 2672 3.115554 ACGCTGCAAATGTTTGAACTTC 58.884 40.909 9.53 0.00 40.55 3.01
1408 2673 3.163630 ACGCTGCAAATGTTTGAACTT 57.836 38.095 9.53 0.00 40.55 2.66
1409 2674 2.869233 ACGCTGCAAATGTTTGAACT 57.131 40.000 9.53 0.00 40.55 3.01
1410 2675 2.405025 GCTACGCTGCAAATGTTTGAAC 59.595 45.455 9.53 0.00 40.55 3.18
1411 2676 2.033927 TGCTACGCTGCAAATGTTTGAA 59.966 40.909 9.53 0.00 40.55 2.69
1412 2677 1.606189 TGCTACGCTGCAAATGTTTGA 59.394 42.857 9.53 0.00 40.55 2.69
1413 2678 2.049077 TGCTACGCTGCAAATGTTTG 57.951 45.000 0.00 1.19 40.29 2.93
1421 2686 1.946768 AGAAAACTTTGCTACGCTGCA 59.053 42.857 0.00 0.00 41.65 4.41
1422 2687 2.688364 AGAAAACTTTGCTACGCTGC 57.312 45.000 0.00 0.00 0.00 5.25
1423 2688 5.786401 AGATAGAAAACTTTGCTACGCTG 57.214 39.130 0.00 0.00 0.00 5.18
1424 2689 6.864342 TCTAGATAGAAAACTTTGCTACGCT 58.136 36.000 0.00 0.00 0.00 5.07
1425 2690 7.521509 TTCTAGATAGAAAACTTTGCTACGC 57.478 36.000 0.00 0.00 39.22 4.42
1426 2691 9.522804 AGATTCTAGATAGAAAACTTTGCTACG 57.477 33.333 6.40 0.00 44.63 3.51
1544 2809 9.386122 AGCTTTCCATCTAGAATCTAGGATAAA 57.614 33.333 16.47 10.96 0.00 1.40
1545 2810 8.964533 AGCTTTCCATCTAGAATCTAGGATAA 57.035 34.615 16.47 4.76 0.00 1.75
1546 2811 8.964533 AAGCTTTCCATCTAGAATCTAGGATA 57.035 34.615 16.47 2.95 0.00 2.59
1547 2812 7.870426 AAGCTTTCCATCTAGAATCTAGGAT 57.130 36.000 16.47 6.87 0.00 3.24
1548 2813 7.504403 CAAAGCTTTCCATCTAGAATCTAGGA 58.496 38.462 16.47 5.18 0.00 2.94
1549 2814 6.204495 GCAAAGCTTTCCATCTAGAATCTAGG 59.796 42.308 16.47 2.83 0.00 3.02
1550 2815 6.204495 GGCAAAGCTTTCCATCTAGAATCTAG 59.796 42.308 9.23 10.93 0.00 2.43
1551 2816 6.058183 GGCAAAGCTTTCCATCTAGAATCTA 58.942 40.000 9.23 0.00 0.00 1.98
1552 2817 4.886489 GGCAAAGCTTTCCATCTAGAATCT 59.114 41.667 9.23 0.00 0.00 2.40
1553 2818 4.641989 TGGCAAAGCTTTCCATCTAGAATC 59.358 41.667 19.97 0.00 0.00 2.52
1554 2819 4.400567 GTGGCAAAGCTTTCCATCTAGAAT 59.599 41.667 24.04 0.00 31.83 2.40
1555 2820 3.758554 GTGGCAAAGCTTTCCATCTAGAA 59.241 43.478 24.04 5.89 31.83 2.10
1556 2821 3.347216 GTGGCAAAGCTTTCCATCTAGA 58.653 45.455 24.04 0.00 31.83 2.43
1557 2822 2.096496 CGTGGCAAAGCTTTCCATCTAG 59.904 50.000 24.04 15.77 31.83 2.43
1558 2823 2.083774 CGTGGCAAAGCTTTCCATCTA 58.916 47.619 24.04 6.48 31.83 1.98
1559 2824 0.883833 CGTGGCAAAGCTTTCCATCT 59.116 50.000 24.04 0.00 31.83 2.90
1560 2825 0.733909 GCGTGGCAAAGCTTTCCATC 60.734 55.000 24.04 17.74 31.83 3.51
1561 2826 1.181098 AGCGTGGCAAAGCTTTCCAT 61.181 50.000 24.04 12.24 37.97 3.41
1562 2827 1.827789 AGCGTGGCAAAGCTTTCCA 60.828 52.632 19.97 19.97 37.97 3.53
1563 2828 1.372128 CAGCGTGGCAAAGCTTTCC 60.372 57.895 9.23 13.81 39.27 3.13
1564 2829 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
1565 2830 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
1566 2831 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
1572 2837 2.422231 AAACCTTTGCAGCGTGGCA 61.422 52.632 0.00 0.00 43.19 4.92
1573 2838 1.950630 CAAACCTTTGCAGCGTGGC 60.951 57.895 0.00 0.00 0.00 5.01
1574 2839 0.102120 TTCAAACCTTTGCAGCGTGG 59.898 50.000 0.00 0.00 38.05 4.94
1575 2840 1.199624 GTTCAAACCTTTGCAGCGTG 58.800 50.000 0.00 0.00 38.05 5.34
1576 2841 1.102978 AGTTCAAACCTTTGCAGCGT 58.897 45.000 0.00 0.00 38.05 5.07
1577 2842 2.119457 GAAGTTCAAACCTTTGCAGCG 58.881 47.619 0.00 0.00 38.05 5.18
1578 2843 3.163630 TGAAGTTCAAACCTTTGCAGC 57.836 42.857 2.20 0.00 38.05 5.25
1579 2844 4.800471 GTCTTGAAGTTCAAACCTTTGCAG 59.200 41.667 18.55 4.64 35.73 4.41
1580 2845 4.219507 TGTCTTGAAGTTCAAACCTTTGCA 59.780 37.500 18.55 7.68 35.73 4.08
1581 2846 4.743493 TGTCTTGAAGTTCAAACCTTTGC 58.257 39.130 18.55 5.56 35.73 3.68
1582 2847 6.799512 AGATGTCTTGAAGTTCAAACCTTTG 58.200 36.000 18.55 6.82 35.73 2.77
1583 2848 7.410120 AAGATGTCTTGAAGTTCAAACCTTT 57.590 32.000 18.55 10.68 35.73 3.11
1584 2849 7.410120 AAAGATGTCTTGAAGTTCAAACCTT 57.590 32.000 18.55 13.24 35.73 3.50
1585 2850 7.410120 AAAAGATGTCTTGAAGTTCAAACCT 57.590 32.000 18.55 12.17 35.73 3.50
1586 2851 9.185192 CATAAAAGATGTCTTGAAGTTCAAACC 57.815 33.333 18.55 12.20 35.73 3.27
1587 2852 9.736023 ACATAAAAGATGTCTTGAAGTTCAAAC 57.264 29.630 18.55 17.68 35.73 2.93
1588 2853 9.734620 CACATAAAAGATGTCTTGAAGTTCAAA 57.265 29.630 18.55 5.42 35.73 2.69
1589 2854 9.119418 TCACATAAAAGATGTCTTGAAGTTCAA 57.881 29.630 17.16 17.16 36.12 2.69
1590 2855 8.675705 TCACATAAAAGATGTCTTGAAGTTCA 57.324 30.769 0.08 0.08 36.12 3.18
1591 2856 8.993121 TCTCACATAAAAGATGTCTTGAAGTTC 58.007 33.333 0.00 0.00 36.12 3.01
1592 2857 8.908786 TCTCACATAAAAGATGTCTTGAAGTT 57.091 30.769 0.00 0.00 36.12 2.66
1593 2858 8.370940 TCTCTCACATAAAAGATGTCTTGAAGT 58.629 33.333 0.00 0.00 36.12 3.01
1594 2859 8.768957 TCTCTCACATAAAAGATGTCTTGAAG 57.231 34.615 0.00 0.00 36.12 3.02
1595 2860 9.559732 TTTCTCTCACATAAAAGATGTCTTGAA 57.440 29.630 0.00 0.00 36.12 2.69
1596 2861 8.993121 GTTTCTCTCACATAAAAGATGTCTTGA 58.007 33.333 0.00 0.00 36.12 3.02
1597 2862 8.777413 TGTTTCTCTCACATAAAAGATGTCTTG 58.223 33.333 0.00 0.00 36.12 3.02
1598 2863 8.908786 TGTTTCTCTCACATAAAAGATGTCTT 57.091 30.769 0.00 0.00 37.91 3.01
1599 2864 8.908786 TTGTTTCTCTCACATAAAAGATGTCT 57.091 30.769 0.00 0.00 0.00 3.41
1600 2865 9.950680 TTTTGTTTCTCTCACATAAAAGATGTC 57.049 29.630 0.00 0.00 0.00 3.06
1636 2901 7.429920 GCAACACAACTAACTTTTCGTATGAAA 59.570 33.333 6.00 6.00 42.21 2.69
1637 2902 6.908284 GCAACACAACTAACTTTTCGTATGAA 59.092 34.615 0.00 0.00 0.00 2.57
1638 2903 6.037281 TGCAACACAACTAACTTTTCGTATGA 59.963 34.615 0.00 0.00 0.00 2.15
1639 2904 6.140108 GTGCAACACAACTAACTTTTCGTATG 59.860 38.462 0.00 0.00 36.32 2.39
1640 2905 6.183360 TGTGCAACACAACTAACTTTTCGTAT 60.183 34.615 0.00 0.00 45.67 3.06
1641 2906 5.121925 TGTGCAACACAACTAACTTTTCGTA 59.878 36.000 0.00 0.00 45.67 3.43
1642 2907 4.083217 TGTGCAACACAACTAACTTTTCGT 60.083 37.500 0.00 0.00 45.67 3.85
1643 2908 4.407818 TGTGCAACACAACTAACTTTTCG 58.592 39.130 0.00 0.00 45.67 3.46
1644 2909 5.636837 TCTGTGCAACACAACTAACTTTTC 58.363 37.500 1.64 0.00 45.67 2.29
1645 2910 5.637006 TCTGTGCAACACAACTAACTTTT 57.363 34.783 1.64 0.00 45.67 2.27
1646 2911 5.590259 AGATCTGTGCAACACAACTAACTTT 59.410 36.000 0.00 0.00 45.67 2.66
1647 2912 5.126067 AGATCTGTGCAACACAACTAACTT 58.874 37.500 0.00 0.00 45.67 2.66
1648 2913 4.708177 AGATCTGTGCAACACAACTAACT 58.292 39.130 0.00 0.00 45.67 2.24
1649 2914 5.424121 AAGATCTGTGCAACACAACTAAC 57.576 39.130 0.00 0.00 45.67 2.34
1650 2915 7.561021 TTTAAGATCTGTGCAACACAACTAA 57.439 32.000 0.00 0.00 45.67 2.24
1651 2916 6.293407 GCTTTAAGATCTGTGCAACACAACTA 60.293 38.462 0.00 0.00 45.67 2.24
1652 2917 5.506317 GCTTTAAGATCTGTGCAACACAACT 60.506 40.000 0.00 0.00 45.67 3.16
1653 2918 4.676924 GCTTTAAGATCTGTGCAACACAAC 59.323 41.667 0.00 0.00 45.67 3.32
1654 2919 4.337836 TGCTTTAAGATCTGTGCAACACAA 59.662 37.500 0.00 0.00 45.67 3.33
1655 2920 3.882288 TGCTTTAAGATCTGTGCAACACA 59.118 39.130 0.00 0.00 45.67 3.72
1656 2921 4.488126 TGCTTTAAGATCTGTGCAACAC 57.512 40.909 0.00 0.00 45.67 3.32
1658 2923 7.221452 CCAATATTGCTTTAAGATCTGTGCAAC 59.779 37.037 19.76 2.27 42.01 4.17
1659 2924 7.122501 TCCAATATTGCTTTAAGATCTGTGCAA 59.877 33.333 19.69 19.69 43.09 4.08
1660 2925 6.602803 TCCAATATTGCTTTAAGATCTGTGCA 59.397 34.615 10.11 1.97 0.00 4.57
1661 2926 6.914757 GTCCAATATTGCTTTAAGATCTGTGC 59.085 38.462 10.11 0.00 0.00 4.57
1662 2927 7.988737 TGTCCAATATTGCTTTAAGATCTGTG 58.011 34.615 10.11 0.00 0.00 3.66
1663 2928 8.462016 GTTGTCCAATATTGCTTTAAGATCTGT 58.538 33.333 10.11 0.00 0.00 3.41
1664 2929 7.917505 GGTTGTCCAATATTGCTTTAAGATCTG 59.082 37.037 10.11 0.00 0.00 2.90
1665 2930 7.615365 TGGTTGTCCAATATTGCTTTAAGATCT 59.385 33.333 10.11 0.00 41.25 2.75
1666 2931 7.771183 TGGTTGTCCAATATTGCTTTAAGATC 58.229 34.615 10.11 0.00 41.25 2.75
1667 2932 7.147846 CCTGGTTGTCCAATATTGCTTTAAGAT 60.148 37.037 10.11 0.00 43.81 2.40
1668 2933 6.152661 CCTGGTTGTCCAATATTGCTTTAAGA 59.847 38.462 10.11 0.00 43.81 2.10
1669 2934 6.152661 TCCTGGTTGTCCAATATTGCTTTAAG 59.847 38.462 10.11 1.79 43.81 1.85
1670 2935 6.013379 TCCTGGTTGTCCAATATTGCTTTAA 58.987 36.000 10.11 0.04 43.81 1.52
1671 2936 5.575157 TCCTGGTTGTCCAATATTGCTTTA 58.425 37.500 10.11 0.00 43.81 1.85
1672 2937 4.415596 TCCTGGTTGTCCAATATTGCTTT 58.584 39.130 10.11 0.00 43.81 3.51
1673 2938 4.046286 TCCTGGTTGTCCAATATTGCTT 57.954 40.909 10.11 0.00 43.81 3.91
1674 2939 3.737559 TCCTGGTTGTCCAATATTGCT 57.262 42.857 10.11 0.00 43.81 3.91
1675 2940 4.278419 GGTATCCTGGTTGTCCAATATTGC 59.722 45.833 10.11 0.00 43.81 3.56
1676 2941 5.445069 TGGTATCCTGGTTGTCCAATATTG 58.555 41.667 8.58 8.58 43.81 1.90
1677 2942 5.399038 CCTGGTATCCTGGTTGTCCAATATT 60.399 44.000 0.00 0.00 43.81 1.28
1678 2943 4.104738 CCTGGTATCCTGGTTGTCCAATAT 59.895 45.833 0.00 0.00 43.81 1.28
1679 2944 3.458118 CCTGGTATCCTGGTTGTCCAATA 59.542 47.826 0.00 0.00 43.81 1.90
1680 2945 2.242196 CCTGGTATCCTGGTTGTCCAAT 59.758 50.000 0.00 0.00 43.81 3.16
1681 2946 1.633432 CCTGGTATCCTGGTTGTCCAA 59.367 52.381 0.00 0.00 43.81 3.53
1682 2947 1.285280 CCTGGTATCCTGGTTGTCCA 58.715 55.000 0.00 0.00 42.05 4.02
1683 2948 0.546598 CCCTGGTATCCTGGTTGTCC 59.453 60.000 10.06 0.00 40.44 4.02
1684 2949 0.107165 GCCCTGGTATCCTGGTTGTC 60.107 60.000 10.06 0.00 40.44 3.18
1685 2950 1.571773 GGCCCTGGTATCCTGGTTGT 61.572 60.000 10.06 0.00 40.44 3.32
1686 2951 1.227383 GGCCCTGGTATCCTGGTTG 59.773 63.158 10.06 0.00 40.44 3.77
1687 2952 2.375345 CGGCCCTGGTATCCTGGTT 61.375 63.158 0.00 0.00 40.44 3.67
1688 2953 2.768344 CGGCCCTGGTATCCTGGT 60.768 66.667 0.00 0.00 40.44 4.00
1689 2954 3.560251 CCGGCCCTGGTATCCTGG 61.560 72.222 0.00 4.97 41.51 4.45
1690 2955 3.560251 CCCGGCCCTGGTATCCTG 61.560 72.222 0.00 0.00 0.00 3.86
1691 2956 4.900259 CCCCGGCCCTGGTATCCT 62.900 72.222 0.00 0.00 0.00 3.24
1693 2958 3.873812 CACCCCGGCCCTGGTATC 61.874 72.222 10.39 0.00 32.32 2.24
1703 2968 2.463589 TTAGAACAGCTGCACCCCGG 62.464 60.000 15.27 0.00 0.00 5.73
1704 2969 0.605319 TTTAGAACAGCTGCACCCCG 60.605 55.000 15.27 0.00 0.00 5.73
1705 2970 1.616159 TTTTAGAACAGCTGCACCCC 58.384 50.000 15.27 0.00 0.00 4.95
1706 2971 3.367395 GGATTTTTAGAACAGCTGCACCC 60.367 47.826 15.27 0.00 0.00 4.61
1707 2972 3.255642 TGGATTTTTAGAACAGCTGCACC 59.744 43.478 15.27 2.79 0.00 5.01
1708 2973 4.229876 GTGGATTTTTAGAACAGCTGCAC 58.770 43.478 15.27 8.20 0.00 4.57
1709 2974 3.058293 CGTGGATTTTTAGAACAGCTGCA 60.058 43.478 15.27 0.00 0.00 4.41
1710 2975 3.058224 ACGTGGATTTTTAGAACAGCTGC 60.058 43.478 15.27 0.00 0.00 5.25
1711 2976 4.378459 GGACGTGGATTTTTAGAACAGCTG 60.378 45.833 13.48 13.48 0.00 4.24
1712 2977 3.751698 GGACGTGGATTTTTAGAACAGCT 59.248 43.478 0.00 0.00 0.00 4.24
1713 2978 3.119955 GGGACGTGGATTTTTAGAACAGC 60.120 47.826 0.00 0.00 0.00 4.40
1714 2979 4.069304 TGGGACGTGGATTTTTAGAACAG 58.931 43.478 0.00 0.00 0.00 3.16
1715 2980 4.069304 CTGGGACGTGGATTTTTAGAACA 58.931 43.478 0.00 0.00 0.00 3.18
1716 2981 3.439129 CCTGGGACGTGGATTTTTAGAAC 59.561 47.826 0.00 0.00 0.00 3.01
1717 2982 3.560453 CCCTGGGACGTGGATTTTTAGAA 60.560 47.826 7.01 0.00 0.00 2.10
1718 2983 2.026636 CCCTGGGACGTGGATTTTTAGA 60.027 50.000 7.01 0.00 0.00 2.10
1719 2984 2.365582 CCCTGGGACGTGGATTTTTAG 58.634 52.381 7.01 0.00 0.00 1.85
1720 2985 1.004979 CCCCTGGGACGTGGATTTTTA 59.995 52.381 16.20 0.00 37.50 1.52
1721 2986 0.251608 CCCCTGGGACGTGGATTTTT 60.252 55.000 16.20 0.00 37.50 1.94
1722 2987 1.382629 CCCCTGGGACGTGGATTTT 59.617 57.895 16.20 0.00 37.50 1.82
1723 2988 3.087065 CCCCTGGGACGTGGATTT 58.913 61.111 16.20 0.00 37.50 2.17
1724 2989 3.728373 GCCCCTGGGACGTGGATT 61.728 66.667 16.20 0.00 37.50 3.01
1739 3004 3.316573 AAGCTGTAGAGGGTGCGCC 62.317 63.158 8.12 8.12 0.00 6.53
1740 3005 1.811679 GAAGCTGTAGAGGGTGCGC 60.812 63.158 0.00 0.00 0.00 6.09
1741 3006 1.517257 CGAAGCTGTAGAGGGTGCG 60.517 63.158 0.00 0.00 0.00 5.34
1742 3007 1.153549 CCGAAGCTGTAGAGGGTGC 60.154 63.158 0.00 0.00 0.00 5.01
1743 3008 1.153549 GCCGAAGCTGTAGAGGGTG 60.154 63.158 0.00 0.00 35.50 4.61
1744 3009 2.711922 CGCCGAAGCTGTAGAGGGT 61.712 63.158 0.00 0.00 36.60 4.34
1745 3010 2.105128 CGCCGAAGCTGTAGAGGG 59.895 66.667 0.00 0.00 36.60 4.30
1753 3018 3.465403 AGATCAGCCGCCGAAGCT 61.465 61.111 0.00 0.00 42.70 3.74
1779 3044 1.403514 GGCTTGAAGAGACTGGACGAG 60.404 57.143 0.00 0.00 0.00 4.18
1780 3045 0.603569 GGCTTGAAGAGACTGGACGA 59.396 55.000 0.00 0.00 0.00 4.20
1782 3047 1.016653 GCGGCTTGAAGAGACTGGAC 61.017 60.000 0.00 0.00 0.00 4.02
1825 3093 2.049228 CTACACAGACGAACGGAACAC 58.951 52.381 0.00 0.00 0.00 3.32
1861 3129 5.551233 AGAACTCTGATTTCGTTCCATTCA 58.449 37.500 2.60 0.00 38.17 2.57
1867 3135 3.423645 CCGCAAGAACTCTGATTTCGTTC 60.424 47.826 2.60 1.59 43.02 3.95
1870 3138 2.069273 ACCGCAAGAACTCTGATTTCG 58.931 47.619 2.60 0.00 43.02 3.46
1910 3178 8.511321 AGCTTATAGATAGAAACACATCGAGAG 58.489 37.037 0.00 0.00 0.00 3.20
1911 3179 8.397575 AGCTTATAGATAGAAACACATCGAGA 57.602 34.615 0.00 0.00 0.00 4.04
1912 3180 8.910666 CAAGCTTATAGATAGAAACACATCGAG 58.089 37.037 0.00 0.00 0.00 4.04
1914 3182 8.581057 ACAAGCTTATAGATAGAAACACATCG 57.419 34.615 0.00 0.00 0.00 3.84
1930 3198 7.449247 TGCTGGGAAAATTTTAACAAGCTTAT 58.551 30.769 24.04 0.00 0.00 1.73
1944 3212 5.156608 CCAATCTTTCTTGCTGGGAAAAT 57.843 39.130 0.00 0.00 33.17 1.82
1952 3220 6.012745 ACATTACTTCCCAATCTTTCTTGCT 58.987 36.000 0.00 0.00 0.00 3.91
1955 3223 9.401058 CAGATACATTACTTCCCAATCTTTCTT 57.599 33.333 0.00 0.00 0.00 2.52
1969 3237 9.615660 TCCCATATTTACCTCAGATACATTACT 57.384 33.333 0.00 0.00 0.00 2.24
1978 3249 9.540538 TGAAAATTTTCCCATATTTACCTCAGA 57.459 29.630 24.51 0.83 36.36 3.27
1992 3263 7.332678 CAGAGATTGGTTCATGAAAATTTTCCC 59.667 37.037 24.51 18.48 36.36 3.97
1998 3269 5.713389 TGCTCAGAGATTGGTTCATGAAAAT 59.287 36.000 10.35 7.40 0.00 1.82
1999 3270 5.072055 TGCTCAGAGATTGGTTCATGAAAA 58.928 37.500 10.35 2.03 0.00 2.29
2000 3271 4.654915 TGCTCAGAGATTGGTTCATGAAA 58.345 39.130 10.35 0.00 0.00 2.69
2033 3304 2.802816 CACTCACACCTGTAGCAGTTTC 59.197 50.000 0.00 0.00 0.00 2.78
2041 3312 4.625324 GCCCAAATATCACTCACACCTGTA 60.625 45.833 0.00 0.00 0.00 2.74
2042 3313 3.873801 GCCCAAATATCACTCACACCTGT 60.874 47.826 0.00 0.00 0.00 4.00
2051 3322 6.245408 TGTTTCTGTTAGCCCAAATATCACT 58.755 36.000 0.00 0.00 0.00 3.41
2052 3323 6.509418 TGTTTCTGTTAGCCCAAATATCAC 57.491 37.500 0.00 0.00 0.00 3.06
2055 3326 5.658190 AGCATGTTTCTGTTAGCCCAAATAT 59.342 36.000 0.00 0.00 0.00 1.28
2056 3327 5.016173 AGCATGTTTCTGTTAGCCCAAATA 58.984 37.500 0.00 0.00 0.00 1.40
2066 3337 5.009911 TGAAGTAATGCAGCATGTTTCTGTT 59.990 36.000 9.18 0.00 39.31 3.16
2068 3339 5.050644 TGAAGTAATGCAGCATGTTTCTG 57.949 39.130 9.18 0.00 39.31 3.02
2077 3348 3.338249 TGTCTTCCTGAAGTAATGCAGC 58.662 45.455 6.78 0.00 39.38 5.25
2078 3349 5.181009 TCATGTCTTCCTGAAGTAATGCAG 58.819 41.667 6.78 0.00 39.38 4.41
2099 3393 2.431260 GGCGCGTAGGTTCGTTCA 60.431 61.111 8.43 0.00 0.00 3.18
2103 3397 1.518572 AATGAGGCGCGTAGGTTCG 60.519 57.895 8.43 0.00 0.00 3.95
2110 3404 3.788766 GCGAACAATGAGGCGCGT 61.789 61.111 8.43 0.27 40.06 6.01
2113 3407 1.915614 AAGCAGCGAACAATGAGGCG 61.916 55.000 0.00 0.00 0.00 5.52
2125 3419 4.145876 TCAGTAAATTTCACAAGCAGCG 57.854 40.909 0.00 0.00 0.00 5.18
2141 3435 3.257375 ACACACGCAATTCTACCTCAGTA 59.743 43.478 0.00 0.00 0.00 2.74
2143 3437 2.413112 CACACACGCAATTCTACCTCAG 59.587 50.000 0.00 0.00 0.00 3.35
2147 3441 1.871039 ACACACACACGCAATTCTACC 59.129 47.619 0.00 0.00 0.00 3.18
2170 3464 9.320295 AGAAATTTTGGTACCCATTCAGATAAA 57.680 29.630 10.07 0.00 31.53 1.40
2171 3465 8.748412 CAGAAATTTTGGTACCCATTCAGATAA 58.252 33.333 10.07 0.00 31.53 1.75
2172 3466 7.893302 ACAGAAATTTTGGTACCCATTCAGATA 59.107 33.333 10.07 0.00 31.53 1.98
2173 3467 6.725834 ACAGAAATTTTGGTACCCATTCAGAT 59.274 34.615 10.07 0.00 31.53 2.90
2174 3468 6.074648 ACAGAAATTTTGGTACCCATTCAGA 58.925 36.000 10.07 0.00 31.53 3.27
2184 3478 5.008217 CGTGGTTGAGACAGAAATTTTGGTA 59.992 40.000 0.00 0.00 0.00 3.25
2187 3481 3.730715 GCGTGGTTGAGACAGAAATTTTG 59.269 43.478 0.00 0.00 0.00 2.44
2213 3507 1.785041 TTTTGACCTCTGCACGCTGC 61.785 55.000 3.44 3.44 45.29 5.25
2214 3508 0.877071 ATTTTGACCTCTGCACGCTG 59.123 50.000 0.00 0.00 0.00 5.18
2215 3509 0.877071 CATTTTGACCTCTGCACGCT 59.123 50.000 0.00 0.00 0.00 5.07
2216 3510 0.874390 TCATTTTGACCTCTGCACGC 59.126 50.000 0.00 0.00 0.00 5.34
2217 3511 2.146342 ACTCATTTTGACCTCTGCACG 58.854 47.619 0.00 0.00 0.00 5.34
2222 3516 6.882768 ATCTCCTTACTCATTTTGACCTCT 57.117 37.500 0.00 0.00 0.00 3.69
2226 3520 9.255304 GATCAGTATCTCCTTACTCATTTTGAC 57.745 37.037 0.00 0.00 29.93 3.18
2239 3533 1.959985 CGCACCAGATCAGTATCTCCT 59.040 52.381 0.00 0.00 40.65 3.69
2242 3536 2.073252 TCCGCACCAGATCAGTATCT 57.927 50.000 0.00 0.00 43.54 1.98
2255 3549 4.456914 CAAAAAGAAATGCAATTCCGCAC 58.543 39.130 10.92 0.00 46.56 5.34
2258 3552 5.671742 AACCAAAAAGAAATGCAATTCCG 57.328 34.783 10.92 0.00 33.67 4.30
2262 3556 6.485984 TGCACATAACCAAAAAGAAATGCAAT 59.514 30.769 0.00 0.00 36.48 3.56
2265 3559 5.695816 TCTGCACATAACCAAAAAGAAATGC 59.304 36.000 0.00 0.00 0.00 3.56
2266 3560 7.712264 TTCTGCACATAACCAAAAAGAAATG 57.288 32.000 0.00 0.00 0.00 2.32
2267 3561 8.776470 CATTTCTGCACATAACCAAAAAGAAAT 58.224 29.630 0.00 0.00 41.43 2.17
2268 3562 7.768120 ACATTTCTGCACATAACCAAAAAGAAA 59.232 29.630 0.00 0.00 36.97 2.52
2269 3563 7.271511 ACATTTCTGCACATAACCAAAAAGAA 58.728 30.769 0.00 0.00 0.00 2.52
2270 3564 6.815089 ACATTTCTGCACATAACCAAAAAGA 58.185 32.000 0.00 0.00 0.00 2.52
2271 3565 7.011295 ACAACATTTCTGCACATAACCAAAAAG 59.989 33.333 0.00 0.00 0.00 2.27
2272 3566 6.820656 ACAACATTTCTGCACATAACCAAAAA 59.179 30.769 0.00 0.00 0.00 1.94
2273 3567 6.344500 ACAACATTTCTGCACATAACCAAAA 58.656 32.000 0.00 0.00 0.00 2.44
2274 3568 5.911752 ACAACATTTCTGCACATAACCAAA 58.088 33.333 0.00 0.00 0.00 3.28
2275 3569 5.301551 AGACAACATTTCTGCACATAACCAA 59.698 36.000 0.00 0.00 0.00 3.67
2276 3570 4.826733 AGACAACATTTCTGCACATAACCA 59.173 37.500 0.00 0.00 0.00 3.67
2277 3571 5.376854 AGACAACATTTCTGCACATAACC 57.623 39.130 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.