Multiple sequence alignment - TraesCS2D01G469400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G469400 chr2D 100.000 6542 0 0 1 6542 574387064 574393605 0.000000e+00 12081.0
1 TraesCS2D01G469400 chr2D 78.187 353 55 17 1156 1494 574388099 574388443 8.600000e-49 206.0
2 TraesCS2D01G469400 chr2D 78.187 353 55 18 1036 1380 574388219 574388557 8.600000e-49 206.0
3 TraesCS2D01G469400 chr2D 87.898 157 18 1 1583 1739 574388499 574388654 4.030000e-42 183.0
4 TraesCS2D01G469400 chr2D 87.898 157 18 1 1436 1591 574388646 574388802 4.030000e-42 183.0
5 TraesCS2D01G469400 chr2D 91.071 56 4 1 1587 1641 574388388 574388443 2.530000e-09 75.0
6 TraesCS2D01G469400 chr2A 92.183 4810 217 42 1 4715 712793755 712798500 0.000000e+00 6652.0
7 TraesCS2D01G469400 chr2A 91.741 1005 73 5 4726 5722 712798588 712799590 0.000000e+00 1387.0
8 TraesCS2D01G469400 chr2A 78.378 555 78 20 1083 1602 712794965 712795512 8.180000e-84 322.0
9 TraesCS2D01G469400 chr2A 77.656 546 78 24 1204 1739 712794843 712795354 6.420000e-75 292.0
10 TraesCS2D01G469400 chr2A 86.266 233 25 4 6316 6542 712799987 712800218 5.070000e-61 246.0
11 TraesCS2D01G469400 chr2A 91.667 60 4 1 1587 1645 712795084 712795143 1.510000e-11 82.4
12 TraesCS2D01G469400 chr2A 92.857 56 3 1 1325 1380 712795350 712795404 5.440000e-11 80.5
13 TraesCS2D01G469400 chr2B 95.939 2758 98 8 1981 4728 690590609 690593362 0.000000e+00 4460.0
14 TraesCS2D01G469400 chr2B 90.349 1461 74 13 555 1984 690589073 690590497 0.000000e+00 1855.0
15 TraesCS2D01G469400 chr2B 91.734 496 34 5 5229 5722 690593486 690593976 0.000000e+00 682.0
16 TraesCS2D01G469400 chr2B 90.625 416 20 3 1 415 690588418 690588815 9.660000e-148 534.0
17 TraesCS2D01G469400 chr2B 93.455 275 17 1 6082 6355 690671769 690672043 2.200000e-109 407.0
18 TraesCS2D01G469400 chr2B 95.238 189 9 0 6354 6542 690674201 690674389 3.830000e-77 300.0
19 TraesCS2D01G469400 chr2B 79.936 314 44 11 1189 1496 690589586 690589886 5.140000e-51 213.0
20 TraesCS2D01G469400 chr2B 89.542 153 16 0 1436 1588 690590090 690590242 1.860000e-45 195.0
21 TraesCS2D01G469400 chr2B 98.077 52 1 0 4726 4777 690593442 690593493 2.510000e-14 91.6
22 TraesCS2D01G469400 chr2B 92.857 56 3 1 1325 1380 690590094 690590148 5.440000e-11 80.5
23 TraesCS2D01G469400 chr2B 92.857 56 3 1 6041 6095 690671689 690671744 5.440000e-11 80.5
24 TraesCS2D01G469400 chr2B 91.379 58 4 1 1587 1643 690589829 690589886 1.960000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G469400 chr2D 574387064 574393605 6541 False 12081.000000 12081 100.000000 1 6542 1 chr2D.!!$F1 6541
1 TraesCS2D01G469400 chr2A 712793755 712800218 6463 False 1294.557143 6652 87.249714 1 6542 7 chr2A.!!$F1 6541
2 TraesCS2D01G469400 chr2B 690588418 690593976 5558 False 909.977778 4460 91.159778 1 5722 9 chr2B.!!$F1 5721
3 TraesCS2D01G469400 chr2B 690671689 690674389 2700 False 262.500000 407 93.850000 6041 6542 3 chr2B.!!$F2 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 993 0.251341 AAACAAAGCTCTCCCGCCAT 60.251 50.0 0.00 0.0 0.00 4.40 F
972 1154 0.471211 CGATCCCCTAACCCTAGCCA 60.471 60.0 0.00 0.0 0.00 4.75 F
1771 1999 0.558712 TCCTCCTCTTCCTCCTAGGC 59.441 60.0 2.96 0.0 34.61 3.93 F
2896 3251 0.528017 TGAAACGTGGCTGCAACAAA 59.472 45.0 8.09 0.0 0.00 2.83 F
3687 4045 0.249868 TGAAGGGAGCACTGTTGTCG 60.250 55.0 0.00 0.0 0.00 4.35 F
4722 5080 0.179062 GCCATTCTGCCTGATCTCGT 60.179 55.0 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2535 2884 0.589708 AAAACTCTGTTTACCGGCGC 59.410 50.000 0.00 0.00 0.00 6.53 R
2575 2925 0.599558 TGCTCTGGCAAATGAAGTGC 59.400 50.000 0.00 0.00 46.36 4.40 R
3575 3933 0.813821 GACTCATGGGCTTCTTTGGC 59.186 55.000 0.00 0.00 0.00 4.52 R
4692 5050 1.336240 GCAGAATGGCGGATAAATGGC 60.336 52.381 0.00 0.00 35.86 4.40 R
5012 5452 0.107017 TCATTTAGCAGGGGAGCAGC 60.107 55.000 0.00 0.00 36.85 5.25 R
5837 6399 0.031716 TCAGCTAGGCATGTCCTCCT 60.032 55.000 11.35 3.63 43.20 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.629617 CAGCATGTGGAAAGAAAAGGGT 59.370 45.455 0.00 0.00 0.00 4.34
151 153 9.987272 ATGTCTTTTCTACATGATGATTCGATA 57.013 29.630 0.00 0.00 36.24 2.92
215 217 1.335810 CCAGAAATGATGATGGTGCCG 59.664 52.381 0.00 0.00 0.00 5.69
230 233 3.387947 CCGCCCTCCCGTTGTACT 61.388 66.667 0.00 0.00 0.00 2.73
249 252 6.106877 GTACTAGTGTACATGCCAACATTG 57.893 41.667 5.39 0.00 46.06 2.82
275 278 4.238514 TGGTTGTTTTCTTTGTGGTTTCG 58.761 39.130 0.00 0.00 0.00 3.46
368 371 9.244799 GGAATTTTCTTTAGAAATCGTGTGTTT 57.755 29.630 5.81 0.00 42.83 2.83
370 373 7.886191 TTTTCTTTAGAAATCGTGTGTTTCG 57.114 32.000 5.81 0.00 42.83 3.46
371 374 5.585500 TCTTTAGAAATCGTGTGTTTCGG 57.415 39.130 0.00 0.00 39.83 4.30
381 384 1.206578 GTGTTTCGGACATGCCACG 59.793 57.895 0.00 0.00 41.10 4.94
415 418 6.543430 TGCATGCCTAGTTTCCATTTATTT 57.457 33.333 16.68 0.00 0.00 1.40
465 627 0.542702 ACAAAGCCCTGTCCAATGGG 60.543 55.000 0.00 0.00 46.00 4.00
514 681 1.070105 TTCAGGGGACGGAACAACG 59.930 57.895 0.00 0.00 39.68 4.10
537 704 8.136057 ACGCAACAAATTTCACATGAATTTAA 57.864 26.923 0.00 0.00 33.54 1.52
549 716 7.537715 TCACATGAATTTAATCGATTGCACTT 58.462 30.769 20.87 7.56 0.00 3.16
553 720 3.502191 TTTAATCGATTGCACTTGGCC 57.498 42.857 20.87 0.00 43.89 5.36
592 759 1.139989 CGCTGTCACATGAAAGACGT 58.860 50.000 0.00 0.00 37.58 4.34
593 760 1.136529 CGCTGTCACATGAAAGACGTG 60.137 52.381 0.00 4.65 40.93 4.49
603 772 6.929049 TCACATGAAAGACGTGTAGAGAATTT 59.071 34.615 0.00 0.00 45.61 1.82
611 780 4.293729 CGTGTAGAGAATTTGTGTCACG 57.706 45.455 0.00 0.00 40.50 4.35
628 797 1.369209 CGTCAAAAGTGCAGCACCG 60.369 57.895 22.41 13.15 34.49 4.94
650 821 6.315393 ACCGTGGAAATAGACATCACATTTAC 59.685 38.462 0.00 0.00 0.00 2.01
651 822 6.315144 CCGTGGAAATAGACATCACATTTACA 59.685 38.462 0.00 1.65 31.57 2.41
652 823 7.148323 CCGTGGAAATAGACATCACATTTACAA 60.148 37.037 5.79 0.00 34.97 2.41
653 824 8.233868 CGTGGAAATAGACATCACATTTACAAA 58.766 33.333 5.79 0.00 34.97 2.83
720 891 0.318275 TTCACACGAATTTTGGCCGC 60.318 50.000 0.00 0.00 0.00 6.53
724 895 1.202475 ACACGAATTTTGGCCGCTTTT 60.202 42.857 0.00 0.00 0.00 2.27
732 903 2.093537 TTGGCCGCTTTTCGCCAAAT 62.094 50.000 10.91 0.00 44.82 2.32
740 911 2.160813 GCTTTTCGCCAAATAGGTCGAA 59.839 45.455 8.54 8.54 46.54 3.71
741 912 3.181500 GCTTTTCGCCAAATAGGTCGAAT 60.181 43.478 11.85 0.00 46.99 3.34
742 913 4.588278 CTTTTCGCCAAATAGGTCGAATC 58.412 43.478 11.85 0.00 46.99 2.52
743 914 2.234300 TCGCCAAATAGGTCGAATCC 57.766 50.000 0.00 0.00 40.97 3.01
744 915 0.859232 CGCCAAATAGGTCGAATCCG 59.141 55.000 0.00 0.00 38.60 4.18
745 916 1.805120 CGCCAAATAGGTCGAATCCGT 60.805 52.381 0.00 0.00 38.60 4.69
746 917 1.865340 GCCAAATAGGTCGAATCCGTC 59.135 52.381 0.00 0.00 40.61 4.79
747 918 3.676515 GCCAAATAGGTCGAATCCGTCG 61.677 54.545 0.00 0.00 44.40 5.12
763 934 2.202544 CGAGAGCAGCACGGAGAC 60.203 66.667 0.00 0.00 0.00 3.36
792 963 2.386064 TTTCCACGGTTCCCTCCACG 62.386 60.000 0.00 0.00 0.00 4.94
793 964 3.307906 CCACGGTTCCCTCCACGA 61.308 66.667 0.00 0.00 0.00 4.35
822 993 0.251341 AAACAAAGCTCTCCCGCCAT 60.251 50.000 0.00 0.00 0.00 4.40
837 1008 2.169789 CCATCGAGTGGCGCTCTTG 61.170 63.158 24.23 19.86 42.12 3.02
839 1010 1.153745 ATCGAGTGGCGCTCTTGAC 60.154 57.895 24.23 0.00 41.98 3.18
841 1012 2.435059 GAGTGGCGCTCTTGACCC 60.435 66.667 20.43 0.00 40.98 4.46
971 1153 1.192803 CCGATCCCCTAACCCTAGCC 61.193 65.000 0.00 0.00 0.00 3.93
972 1154 0.471211 CGATCCCCTAACCCTAGCCA 60.471 60.000 0.00 0.00 0.00 4.75
973 1155 1.353091 GATCCCCTAACCCTAGCCAG 58.647 60.000 0.00 0.00 0.00 4.85
974 1156 0.768609 ATCCCCTAACCCTAGCCAGC 60.769 60.000 0.00 0.00 0.00 4.85
1046 1228 4.831307 CGGCCTCGACTTCGACGG 62.831 72.222 0.00 5.19 44.22 4.79
1179 1373 3.607661 GACGAGCCTCGGATCCCC 61.608 72.222 19.61 0.00 45.59 4.81
1265 1459 4.831307 CCTCGGCTTCGACGACGG 62.831 72.222 17.82 7.91 38.55 4.79
1500 1707 4.504152 GACGACGACGACGACTTT 57.496 55.556 25.15 3.47 42.66 2.66
1501 1708 2.041469 GACGACGACGACGACTTTG 58.959 57.895 25.15 0.00 42.66 2.77
1502 1709 0.655626 GACGACGACGACGACTTTGT 60.656 55.000 25.15 1.41 42.66 2.83
1518 1725 4.397832 GTTGCCGCCGGAACCCTA 62.398 66.667 7.68 0.00 0.00 3.53
1525 1732 3.846430 CCGGAACCCTAGACCCGC 61.846 72.222 0.00 0.00 40.56 6.13
1526 1733 3.846430 CGGAACCCTAGACCCGCC 61.846 72.222 0.00 0.00 35.29 6.13
1575 1782 0.603569 GACTGAAGAGGTTGCGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
1578 1785 1.448717 GAAGAGGTTGCGGAGAGGC 60.449 63.158 0.00 0.00 0.00 4.70
1623 1830 2.882876 GCGCCCTCGTTCTCACTA 59.117 61.111 0.00 0.00 38.14 2.74
1771 1999 0.558712 TCCTCCTCTTCCTCCTAGGC 59.441 60.000 2.96 0.00 34.61 3.93
1989 2332 8.834465 GTCATGCAATTGTGATTTACTATCTCT 58.166 33.333 7.40 0.00 0.00 3.10
2265 2611 5.311265 TGATTCATTCTGGATCTGTATGGC 58.689 41.667 0.00 0.00 0.00 4.40
2294 2640 8.638565 CAAAAACAGCTGAAATTTACCTAATCG 58.361 33.333 23.35 0.79 0.00 3.34
2295 2641 7.448748 AAACAGCTGAAATTTACCTAATCGT 57.551 32.000 23.35 0.00 0.00 3.73
2311 2657 3.610040 ATCGTCCTTGCACACAGATTA 57.390 42.857 0.00 0.00 0.00 1.75
2346 2692 2.461695 TCTGCTGTTTCCCTCCTAGAG 58.538 52.381 0.00 0.00 0.00 2.43
2357 2703 3.846588 TCCCTCCTAGAGCAGACATTTTT 59.153 43.478 0.00 0.00 0.00 1.94
2419 2765 8.081633 TCTGCTTGATGAACAACGATTAAAATT 58.918 29.630 0.00 0.00 34.56 1.82
2459 2808 1.588082 CATGACAGCAAAGTGCCCC 59.412 57.895 0.00 0.00 46.52 5.80
2533 2882 9.849166 ATAGTTATTTTCCACCATTTTTGTACG 57.151 29.630 0.00 0.00 0.00 3.67
2534 2883 6.643360 AGTTATTTTCCACCATTTTTGTACGC 59.357 34.615 0.00 0.00 0.00 4.42
2535 2884 2.690173 TTCCACCATTTTTGTACGCG 57.310 45.000 3.53 3.53 0.00 6.01
2588 2938 6.077961 GTTATTTAACGCACTTCATTTGCC 57.922 37.500 0.00 0.00 36.57 4.52
2612 2962 5.121454 CAGAGCAAACTGCCTCTAGTAAAAG 59.879 44.000 0.00 0.00 46.52 2.27
2617 2967 6.149474 GCAAACTGCCTCTAGTAAAAGAATCA 59.851 38.462 0.00 0.00 37.42 2.57
2618 2968 7.148171 GCAAACTGCCTCTAGTAAAAGAATCAT 60.148 37.037 0.00 0.00 37.42 2.45
2619 2969 8.394121 CAAACTGCCTCTAGTAAAAGAATCATC 58.606 37.037 0.00 0.00 0.00 2.92
2634 2985 4.904251 AGAATCATCTCCTAGCCTAAGCAA 59.096 41.667 0.00 0.00 43.56 3.91
2647 2998 6.205101 AGCCTAAGCAATTCAGAGAAATTG 57.795 37.500 5.25 5.25 45.36 2.32
2893 3248 1.008538 CCTGAAACGTGGCTGCAAC 60.009 57.895 0.50 0.00 0.00 4.17
2896 3251 0.528017 TGAAACGTGGCTGCAACAAA 59.472 45.000 8.09 0.00 0.00 2.83
2988 3343 9.582431 CATTCTGAAATGAAATTATCAACAGCT 57.418 29.630 0.00 0.00 44.25 4.24
3007 3362 2.636830 CTACCTGTGAGCAAATCCTGG 58.363 52.381 0.00 0.00 0.00 4.45
3133 3488 5.048504 ACTGAGCAGATATGTGTTTTTGTGG 60.049 40.000 4.21 0.00 0.00 4.17
3281 3639 6.182507 TCCTTTGAGAACCTTTAGCACTTA 57.817 37.500 0.00 0.00 0.00 2.24
3282 3640 5.995897 TCCTTTGAGAACCTTTAGCACTTAC 59.004 40.000 0.00 0.00 0.00 2.34
3290 3648 8.723942 AGAACCTTTAGCACTTACATGATTAG 57.276 34.615 0.00 0.00 0.00 1.73
3372 3730 9.557338 CTTCTAGCAATTCAAAATTCTCTCTTG 57.443 33.333 0.00 0.00 0.00 3.02
3459 3817 8.339714 CAATGTCAAATTCTGTTGCTTCAAAAT 58.660 29.630 0.00 0.00 0.00 1.82
3515 3873 7.924358 TCCTAAGATAACAATAAGCCCACTA 57.076 36.000 0.00 0.00 0.00 2.74
3575 3933 9.219603 TCAGATGATAACAGGAAACAAAGTAAG 57.780 33.333 0.00 0.00 0.00 2.34
3687 4045 0.249868 TGAAGGGAGCACTGTTGTCG 60.250 55.000 0.00 0.00 0.00 4.35
3749 4107 2.038164 TGCTCTTGATGACTTCTGCAGT 59.962 45.455 14.67 0.00 39.07 4.40
4025 4383 4.115199 GGGGCTGGCACTTCCGAT 62.115 66.667 2.88 0.00 37.80 4.18
4304 4662 2.103941 GAGGATGGCAGGAAGGTAAGAG 59.896 54.545 0.00 0.00 0.00 2.85
4376 4734 3.818787 CCCTGCGTGCTTCATGCC 61.819 66.667 8.35 0.00 44.81 4.40
4468 4826 2.744741 GCCTTCTAGCCACTTCTGTTTC 59.255 50.000 0.00 0.00 0.00 2.78
4469 4827 3.339141 CCTTCTAGCCACTTCTGTTTCC 58.661 50.000 0.00 0.00 0.00 3.13
4548 4906 8.383175 TGTCTCTAAAAATGGACAGGAGTTAAT 58.617 33.333 0.00 0.00 34.38 1.40
4653 5011 7.217200 TCCTGGTTTATTCTGTGCTCATATAC 58.783 38.462 0.00 0.00 0.00 1.47
4722 5080 0.179062 GCCATTCTGCCTGATCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
4766 5206 2.851588 TGCACCCCAGTGTGGCTA 60.852 61.111 0.00 0.00 46.35 3.93
4786 5226 4.444876 GCTAGGATGATTGTTTGGCTCCTA 60.445 45.833 0.00 0.00 34.95 2.94
4787 5227 4.803329 AGGATGATTGTTTGGCTCCTAT 57.197 40.909 0.00 0.00 31.45 2.57
4884 5324 6.670027 AGTTGAAGGTATCCAGATTCACTACT 59.330 38.462 0.00 0.00 31.72 2.57
4888 5328 7.618117 TGAAGGTATCCAGATTCACTACTTGTA 59.382 37.037 0.00 0.00 0.00 2.41
4920 5360 5.024118 TGGAGTAAGAAAAGTAGGGAGGAG 58.976 45.833 0.00 0.00 0.00 3.69
4956 5396 5.899120 TGCTTACCGTAGATATGATCTCC 57.101 43.478 0.00 0.00 40.76 3.71
4990 5430 5.854010 TTTAACACCTAAACATGTTGGCA 57.146 34.783 12.82 0.00 0.00 4.92
5000 5440 1.089920 CATGTTGGCAGCCAGACTAC 58.910 55.000 15.50 10.74 33.81 2.73
5001 5441 0.692476 ATGTTGGCAGCCAGACTACA 59.308 50.000 17.26 17.26 45.00 2.74
5011 5451 4.397417 GCAGCCAGACTACATGAGATTTTT 59.603 41.667 0.00 0.00 0.00 1.94
5012 5452 5.675575 GCAGCCAGACTACATGAGATTTTTG 60.676 44.000 0.00 0.00 0.00 2.44
5021 5461 1.549203 TGAGATTTTTGCTGCTCCCC 58.451 50.000 0.00 0.00 0.00 4.81
5026 5466 0.112218 TTTTTGCTGCTCCCCTGCTA 59.888 50.000 0.00 0.00 38.99 3.49
5031 5471 0.107017 GCTGCTCCCCTGCTAAATGA 60.107 55.000 0.00 0.00 35.71 2.57
5043 5483 5.832060 CCCTGCTAAATGAGGAGAATTGATT 59.168 40.000 0.00 0.00 46.32 2.57
5059 5499 5.728637 ATTGATTTGGTTCTCCTTTCCAC 57.271 39.130 0.00 0.00 34.23 4.02
5070 5510 3.644966 TCCTTTCCACGCAAGGATATT 57.355 42.857 0.00 0.00 44.17 1.28
5076 5516 1.102154 CACGCAAGGATATTTGGGCA 58.898 50.000 4.57 0.00 42.73 5.36
5105 5545 4.301628 AGCATTGAACAAACTTGCTTAGC 58.698 39.130 0.00 0.00 40.58 3.09
5162 5605 4.819088 GCTAAGCAAGGCTAGAATTTAGCT 59.181 41.667 15.72 0.00 38.25 3.32
5167 5610 5.124617 AGCAAGGCTAGAATTTAGCTTGTTC 59.875 40.000 14.91 0.00 36.99 3.18
5178 5621 8.233190 AGAATTTAGCTTGTTCGAGATTCAAAG 58.767 33.333 0.00 0.00 0.00 2.77
5192 5635 6.076981 AGATTCAAAGAAACCACACATGTC 57.923 37.500 0.00 0.00 0.00 3.06
5194 5637 4.898829 TCAAAGAAACCACACATGTCTG 57.101 40.909 0.00 0.00 0.00 3.51
5209 5654 0.588252 GTCTGTGTGATGGTGTGTGC 59.412 55.000 0.00 0.00 0.00 4.57
5218 5663 1.750778 GATGGTGTGTGCTATTTGGGG 59.249 52.381 0.00 0.00 0.00 4.96
5317 5763 6.299805 TCTTAGAGTAGTGTGATGCCAATT 57.700 37.500 0.00 0.00 0.00 2.32
5364 5810 2.503331 TCACTGCATTGTTGGTACTGG 58.497 47.619 3.77 0.00 0.00 4.00
5370 5816 5.188948 ACTGCATTGTTGGTACTGGTATCTA 59.811 40.000 0.00 0.00 0.00 1.98
5454 5900 2.155279 GTCAAGAAGGAAGGTTCTGCC 58.845 52.381 0.00 0.00 36.86 4.85
5484 5930 1.450025 GGGGTTCTTCTACGGCAAAG 58.550 55.000 0.00 0.00 0.00 2.77
5487 5933 3.143728 GGGTTCTTCTACGGCAAAGAAA 58.856 45.455 9.13 0.00 41.70 2.52
5544 5990 1.812571 GCCAAAAGGAAGCGATGAGAA 59.187 47.619 0.00 0.00 0.00 2.87
5547 5993 4.479619 CCAAAAGGAAGCGATGAGAAAAG 58.520 43.478 0.00 0.00 0.00 2.27
5554 6000 2.183679 AGCGATGAGAAAAGGAGGTCT 58.816 47.619 0.00 0.00 0.00 3.85
5572 6018 0.104671 CTGTTGGTGGCCCAGTTTTG 59.895 55.000 0.00 0.00 43.15 2.44
5576 6022 1.280457 TGGTGGCCCAGTTTTGTTTT 58.720 45.000 0.00 0.00 35.17 2.43
5591 6040 9.956720 CAGTTTTGTTTTCACAATAGAGAAGAT 57.043 29.630 0.00 0.00 42.66 2.40
5634 6083 1.938577 CCCTGTGCATTTCATCTCTCG 59.061 52.381 0.00 0.00 0.00 4.04
5668 6117 0.533491 TATGCTACGGTCGCCTGTTT 59.467 50.000 1.95 0.00 0.00 2.83
5681 6130 2.095567 CGCCTGTTTTCCTCTGTCAATG 60.096 50.000 0.00 0.00 0.00 2.82
5705 6154 1.758280 ACACACTACAACCTTCGGTCA 59.242 47.619 0.00 0.00 33.12 4.02
5708 6157 3.247648 CACACTACAACCTTCGGTCAAAG 59.752 47.826 0.00 0.00 33.12 2.77
5711 6160 0.182775 ACAACCTTCGGTCAAAGCCT 59.817 50.000 0.00 0.00 33.12 4.58
5729 6178 6.731292 AAGCCTTTCTTTGTTAAGGTGATT 57.269 33.333 0.00 0.00 42.37 2.57
5730 6179 6.731292 AGCCTTTCTTTGTTAAGGTGATTT 57.269 33.333 0.00 0.00 42.37 2.17
5742 6233 1.353022 AGGTGATTTTAAGGACGGGCA 59.647 47.619 0.00 0.00 0.00 5.36
5743 6234 1.471287 GGTGATTTTAAGGACGGGCAC 59.529 52.381 0.00 0.00 0.00 5.01
5771 6262 3.392616 GTCCTTGTGGAGGTGATGGATAT 59.607 47.826 0.00 0.00 46.39 1.63
5774 6265 4.042560 CCTTGTGGAGGTGATGGATATGAT 59.957 45.833 0.00 0.00 40.95 2.45
5775 6266 4.628963 TGTGGAGGTGATGGATATGATG 57.371 45.455 0.00 0.00 0.00 3.07
5777 6268 5.154418 TGTGGAGGTGATGGATATGATGTA 58.846 41.667 0.00 0.00 0.00 2.29
5778 6269 5.786975 TGTGGAGGTGATGGATATGATGTAT 59.213 40.000 0.00 0.00 0.00 2.29
5779 6270 6.111382 GTGGAGGTGATGGATATGATGTATG 58.889 44.000 0.00 0.00 0.00 2.39
5780 6271 6.024893 TGGAGGTGATGGATATGATGTATGA 58.975 40.000 0.00 0.00 0.00 2.15
5787 6349 7.978414 GTGATGGATATGATGTATGAGGTAGTG 59.022 40.741 0.00 0.00 0.00 2.74
5791 6353 7.038088 TGGATATGATGTATGAGGTAGTGCAAT 60.038 37.037 0.00 0.00 0.00 3.56
5795 6357 3.949132 TGTATGAGGTAGTGCAATGCAA 58.051 40.909 10.44 0.00 41.47 4.08
5796 6358 4.331108 TGTATGAGGTAGTGCAATGCAAA 58.669 39.130 10.44 0.00 41.47 3.68
5799 6361 2.492881 TGAGGTAGTGCAATGCAAATGG 59.507 45.455 10.44 0.00 41.47 3.16
5800 6362 1.826720 AGGTAGTGCAATGCAAATGGG 59.173 47.619 10.44 0.00 41.47 4.00
5812 6374 1.410004 CAAATGGGCTCAGCATGGAT 58.590 50.000 0.00 0.00 36.16 3.41
5813 6375 1.068588 CAAATGGGCTCAGCATGGATG 59.931 52.381 0.00 0.00 36.16 3.51
5815 6377 0.554305 ATGGGCTCAGCATGGATGAA 59.446 50.000 0.00 0.00 36.16 2.57
5816 6378 0.332293 TGGGCTCAGCATGGATGAAA 59.668 50.000 0.00 0.00 36.16 2.69
5817 6379 1.030457 GGGCTCAGCATGGATGAAAG 58.970 55.000 0.00 0.00 36.16 2.62
5819 6381 2.421952 GGGCTCAGCATGGATGAAAGTA 60.422 50.000 0.00 0.00 36.16 2.24
5820 6382 3.484407 GGCTCAGCATGGATGAAAGTAT 58.516 45.455 0.00 0.00 36.16 2.12
5821 6383 3.252701 GGCTCAGCATGGATGAAAGTATG 59.747 47.826 0.00 0.00 36.16 2.39
5822 6384 3.252701 GCTCAGCATGGATGAAAGTATGG 59.747 47.826 0.00 0.00 36.16 2.74
5824 6386 3.459227 TCAGCATGGATGAAAGTATGGGA 59.541 43.478 0.00 0.00 36.16 4.37
5825 6387 3.819337 CAGCATGGATGAAAGTATGGGAG 59.181 47.826 0.00 0.00 0.00 4.30
5826 6388 3.718434 AGCATGGATGAAAGTATGGGAGA 59.282 43.478 0.00 0.00 0.00 3.71
5827 6389 3.817647 GCATGGATGAAAGTATGGGAGAC 59.182 47.826 0.00 0.00 0.00 3.36
5829 6391 5.439721 CATGGATGAAAGTATGGGAGACAA 58.560 41.667 0.00 0.00 0.00 3.18
5830 6392 5.102953 TGGATGAAAGTATGGGAGACAAG 57.897 43.478 0.00 0.00 0.00 3.16
5831 6393 4.080356 TGGATGAAAGTATGGGAGACAAGG 60.080 45.833 0.00 0.00 0.00 3.61
5832 6394 4.080299 GGATGAAAGTATGGGAGACAAGGT 60.080 45.833 0.00 0.00 0.00 3.50
5833 6395 4.286297 TGAAAGTATGGGAGACAAGGTG 57.714 45.455 0.00 0.00 0.00 4.00
5834 6396 3.009033 TGAAAGTATGGGAGACAAGGTGG 59.991 47.826 0.00 0.00 0.00 4.61
5835 6397 1.584724 AGTATGGGAGACAAGGTGGG 58.415 55.000 0.00 0.00 0.00 4.61
5836 6398 1.203440 AGTATGGGAGACAAGGTGGGT 60.203 52.381 0.00 0.00 0.00 4.51
5837 6399 2.045326 AGTATGGGAGACAAGGTGGGTA 59.955 50.000 0.00 0.00 0.00 3.69
5838 6400 1.584724 ATGGGAGACAAGGTGGGTAG 58.415 55.000 0.00 0.00 0.00 3.18
5839 6401 0.546747 TGGGAGACAAGGTGGGTAGG 60.547 60.000 0.00 0.00 0.00 3.18
5840 6402 0.252558 GGGAGACAAGGTGGGTAGGA 60.253 60.000 0.00 0.00 0.00 2.94
5841 6403 1.196012 GGAGACAAGGTGGGTAGGAG 58.804 60.000 0.00 0.00 0.00 3.69
5842 6404 1.196012 GAGACAAGGTGGGTAGGAGG 58.804 60.000 0.00 0.00 0.00 4.30
5843 6405 0.790993 AGACAAGGTGGGTAGGAGGA 59.209 55.000 0.00 0.00 0.00 3.71
5844 6406 0.903236 GACAAGGTGGGTAGGAGGAC 59.097 60.000 0.00 0.00 0.00 3.85
5845 6407 0.192566 ACAAGGTGGGTAGGAGGACA 59.807 55.000 0.00 0.00 0.00 4.02
5846 6408 1.203440 ACAAGGTGGGTAGGAGGACAT 60.203 52.381 0.00 0.00 0.00 3.06
5847 6409 1.210478 CAAGGTGGGTAGGAGGACATG 59.790 57.143 0.00 0.00 0.00 3.21
5848 6410 0.983378 AGGTGGGTAGGAGGACATGC 60.983 60.000 0.00 0.00 0.00 4.06
5849 6411 1.527370 GTGGGTAGGAGGACATGCC 59.473 63.158 0.00 0.00 32.13 4.40
5862 6424 2.802816 GGACATGCCTAGCTGATTTACG 59.197 50.000 0.00 0.00 0.00 3.18
5863 6425 2.213499 ACATGCCTAGCTGATTTACGC 58.787 47.619 0.00 0.00 0.00 4.42
5864 6426 2.158900 ACATGCCTAGCTGATTTACGCT 60.159 45.455 0.00 0.00 40.15 5.07
5865 6427 2.691409 TGCCTAGCTGATTTACGCTT 57.309 45.000 0.00 0.00 37.68 4.68
5866 6428 2.550978 TGCCTAGCTGATTTACGCTTC 58.449 47.619 0.00 0.00 37.68 3.86
5867 6429 1.867865 GCCTAGCTGATTTACGCTTCC 59.132 52.381 0.00 0.00 37.68 3.46
5868 6430 2.741878 GCCTAGCTGATTTACGCTTCCA 60.742 50.000 0.00 0.00 37.68 3.53
5869 6431 3.531538 CCTAGCTGATTTACGCTTCCAA 58.468 45.455 0.00 0.00 37.68 3.53
5870 6432 3.938963 CCTAGCTGATTTACGCTTCCAAA 59.061 43.478 0.00 0.00 37.68 3.28
5871 6433 4.034510 CCTAGCTGATTTACGCTTCCAAAG 59.965 45.833 0.00 0.00 37.68 2.77
5872 6434 3.412386 AGCTGATTTACGCTTCCAAAGT 58.588 40.909 0.00 0.00 31.17 2.66
5873 6435 3.821033 AGCTGATTTACGCTTCCAAAGTT 59.179 39.130 0.00 0.00 31.17 2.66
5874 6436 3.914364 GCTGATTTACGCTTCCAAAGTTG 59.086 43.478 0.00 0.00 0.00 3.16
5875 6437 8.002143 TAGCTGATTTACGCTTCCAAAGTTGG 62.002 42.308 3.51 3.51 42.28 3.77
5883 6445 3.287445 CCAAAGTTGGCATCCCGG 58.713 61.111 0.00 0.00 42.21 5.73
5884 6446 1.606313 CCAAAGTTGGCATCCCGGT 60.606 57.895 0.00 0.00 42.21 5.28
5885 6447 1.184970 CCAAAGTTGGCATCCCGGTT 61.185 55.000 0.00 0.00 42.21 4.44
5886 6448 1.540267 CAAAGTTGGCATCCCGGTTA 58.460 50.000 0.00 0.00 0.00 2.85
5887 6449 1.201414 CAAAGTTGGCATCCCGGTTAC 59.799 52.381 0.00 0.00 0.00 2.50
5888 6450 0.696501 AAGTTGGCATCCCGGTTACT 59.303 50.000 0.00 0.00 0.00 2.24
5889 6451 1.575419 AGTTGGCATCCCGGTTACTA 58.425 50.000 0.00 0.00 0.00 1.82
5890 6452 1.485066 AGTTGGCATCCCGGTTACTAG 59.515 52.381 0.00 0.00 0.00 2.57
5891 6453 0.179468 TTGGCATCCCGGTTACTAGC 59.821 55.000 0.00 0.00 0.00 3.42
5892 6454 1.070957 GGCATCCCGGTTACTAGCC 59.929 63.158 0.00 0.88 0.00 3.93
5893 6455 1.692173 GGCATCCCGGTTACTAGCCA 61.692 60.000 0.00 0.00 40.29 4.75
5894 6456 0.532196 GCATCCCGGTTACTAGCCAC 60.532 60.000 0.00 0.00 0.00 5.01
5895 6457 0.828022 CATCCCGGTTACTAGCCACA 59.172 55.000 0.00 0.00 0.00 4.17
5896 6458 1.416401 CATCCCGGTTACTAGCCACAT 59.584 52.381 0.00 0.00 0.00 3.21
5897 6459 1.117150 TCCCGGTTACTAGCCACATC 58.883 55.000 0.00 0.00 0.00 3.06
5898 6460 0.249322 CCCGGTTACTAGCCACATCG 60.249 60.000 0.00 0.00 0.00 3.84
5899 6461 0.249322 CCGGTTACTAGCCACATCGG 60.249 60.000 0.00 0.00 38.11 4.18
5900 6462 0.742505 CGGTTACTAGCCACATCGGA 59.257 55.000 0.00 0.00 36.56 4.55
5901 6463 1.135527 CGGTTACTAGCCACATCGGAA 59.864 52.381 0.00 0.00 36.56 4.30
5902 6464 2.798499 CGGTTACTAGCCACATCGGAAG 60.798 54.545 0.00 0.00 36.56 3.46
5922 6484 9.517868 TCGGAAGATTAAAATAAACAGGGTAAA 57.482 29.630 0.00 0.00 33.31 2.01
5923 6485 9.563898 CGGAAGATTAAAATAAACAGGGTAAAC 57.436 33.333 0.00 0.00 0.00 2.01
5940 6502 9.221933 CAGGGTAAACACTGTAACATATTTACA 57.778 33.333 4.13 8.96 42.29 2.41
5941 6503 9.796180 AGGGTAAACACTGTAACATATTTACAA 57.204 29.630 0.00 0.00 35.29 2.41
5959 6521 8.589701 ATTTACAAATAGAGGGTAAAAGGTGG 57.410 34.615 0.00 0.00 39.56 4.61
5960 6522 5.853572 ACAAATAGAGGGTAAAAGGTGGA 57.146 39.130 0.00 0.00 0.00 4.02
5961 6523 6.208840 ACAAATAGAGGGTAAAAGGTGGAA 57.791 37.500 0.00 0.00 0.00 3.53
5962 6524 6.246163 ACAAATAGAGGGTAAAAGGTGGAAG 58.754 40.000 0.00 0.00 0.00 3.46
5963 6525 6.183361 ACAAATAGAGGGTAAAAGGTGGAAGT 60.183 38.462 0.00 0.00 0.00 3.01
5964 6526 5.695424 ATAGAGGGTAAAAGGTGGAAGTC 57.305 43.478 0.00 0.00 0.00 3.01
5965 6527 3.323775 AGAGGGTAAAAGGTGGAAGTCA 58.676 45.455 0.00 0.00 0.00 3.41
5966 6528 3.072622 AGAGGGTAAAAGGTGGAAGTCAC 59.927 47.826 0.00 0.00 45.34 3.67
5967 6529 3.053826 AGGGTAAAAGGTGGAAGTCACT 58.946 45.455 0.00 0.00 45.38 3.41
5968 6530 3.072622 AGGGTAAAAGGTGGAAGTCACTC 59.927 47.826 0.00 0.00 45.38 3.51
5969 6531 3.072622 GGGTAAAAGGTGGAAGTCACTCT 59.927 47.826 0.00 0.00 45.38 3.24
5970 6532 4.285260 GGGTAAAAGGTGGAAGTCACTCTA 59.715 45.833 0.00 0.00 45.38 2.43
5971 6533 5.221783 GGGTAAAAGGTGGAAGTCACTCTAA 60.222 44.000 0.00 0.00 45.38 2.10
5972 6534 6.473758 GGTAAAAGGTGGAAGTCACTCTAAT 58.526 40.000 0.00 0.00 45.38 1.73
5973 6535 6.940867 GGTAAAAGGTGGAAGTCACTCTAATT 59.059 38.462 0.00 0.00 45.38 1.40
5974 6536 7.447545 GGTAAAAGGTGGAAGTCACTCTAATTT 59.552 37.037 0.00 0.00 45.38 1.82
5975 6537 9.498176 GTAAAAGGTGGAAGTCACTCTAATTTA 57.502 33.333 0.00 0.00 45.38 1.40
5976 6538 8.990163 AAAAGGTGGAAGTCACTCTAATTTAA 57.010 30.769 0.00 0.00 45.38 1.52
5977 6539 9.588096 AAAAGGTGGAAGTCACTCTAATTTAAT 57.412 29.630 0.00 0.00 45.38 1.40
5978 6540 9.588096 AAAGGTGGAAGTCACTCTAATTTAATT 57.412 29.630 0.00 0.00 45.38 1.40
5979 6541 8.567285 AGGTGGAAGTCACTCTAATTTAATTG 57.433 34.615 0.00 0.00 45.38 2.32
5980 6542 8.164070 AGGTGGAAGTCACTCTAATTTAATTGT 58.836 33.333 0.00 0.00 45.38 2.71
5981 6543 9.444600 GGTGGAAGTCACTCTAATTTAATTGTA 57.555 33.333 0.00 0.00 45.38 2.41
5984 6546 9.937175 GGAAGTCACTCTAATTTAATTGTATGC 57.063 33.333 0.00 0.00 0.00 3.14
5997 6559 8.621532 TTTAATTGTATGCTTCTCAACTCTGT 57.378 30.769 0.00 0.00 0.00 3.41
5998 6560 6.492007 AATTGTATGCTTCTCAACTCTGTG 57.508 37.500 0.00 0.00 0.00 3.66
5999 6561 4.607293 TGTATGCTTCTCAACTCTGTGT 57.393 40.909 0.00 0.00 0.00 3.72
6000 6562 4.560128 TGTATGCTTCTCAACTCTGTGTC 58.440 43.478 0.00 0.00 0.00 3.67
6001 6563 2.533266 TGCTTCTCAACTCTGTGTCC 57.467 50.000 0.00 0.00 0.00 4.02
6002 6564 1.762370 TGCTTCTCAACTCTGTGTCCA 59.238 47.619 0.00 0.00 0.00 4.02
6003 6565 2.170397 TGCTTCTCAACTCTGTGTCCAA 59.830 45.455 0.00 0.00 0.00 3.53
6004 6566 2.805099 GCTTCTCAACTCTGTGTCCAAG 59.195 50.000 0.00 0.00 0.00 3.61
6005 6567 3.493350 GCTTCTCAACTCTGTGTCCAAGA 60.493 47.826 0.00 0.00 0.00 3.02
6006 6568 3.735237 TCTCAACTCTGTGTCCAAGAC 57.265 47.619 0.00 0.00 0.00 3.01
6007 6569 3.300388 TCTCAACTCTGTGTCCAAGACT 58.700 45.455 0.00 0.00 33.15 3.24
6008 6570 3.706594 TCTCAACTCTGTGTCCAAGACTT 59.293 43.478 0.00 0.00 33.15 3.01
6009 6571 4.162320 TCTCAACTCTGTGTCCAAGACTTT 59.838 41.667 0.00 0.00 33.15 2.66
6010 6572 4.843728 TCAACTCTGTGTCCAAGACTTTT 58.156 39.130 0.00 0.00 33.15 2.27
6011 6573 4.635765 TCAACTCTGTGTCCAAGACTTTTG 59.364 41.667 0.00 0.00 33.15 2.44
6012 6574 3.545703 ACTCTGTGTCCAAGACTTTTGG 58.454 45.455 0.00 0.00 40.87 3.28
6013 6575 2.880890 CTCTGTGTCCAAGACTTTTGGG 59.119 50.000 6.13 0.00 39.96 4.12
6014 6576 2.241176 TCTGTGTCCAAGACTTTTGGGT 59.759 45.455 6.13 0.00 39.96 4.51
6015 6577 3.456644 TCTGTGTCCAAGACTTTTGGGTA 59.543 43.478 6.13 0.00 39.96 3.69
6016 6578 4.080243 TCTGTGTCCAAGACTTTTGGGTAA 60.080 41.667 6.13 0.00 39.96 2.85
6017 6579 4.798882 TGTGTCCAAGACTTTTGGGTAAT 58.201 39.130 6.13 0.00 39.96 1.89
6018 6580 5.205056 TGTGTCCAAGACTTTTGGGTAATT 58.795 37.500 6.13 0.00 39.96 1.40
6019 6581 5.659079 TGTGTCCAAGACTTTTGGGTAATTT 59.341 36.000 6.13 0.00 39.96 1.82
6020 6582 6.155393 TGTGTCCAAGACTTTTGGGTAATTTT 59.845 34.615 6.13 0.00 39.96 1.82
6021 6583 6.478673 GTGTCCAAGACTTTTGGGTAATTTTG 59.521 38.462 6.13 0.00 39.96 2.44
6022 6584 6.155393 TGTCCAAGACTTTTGGGTAATTTTGT 59.845 34.615 6.13 0.00 39.96 2.83
6023 6585 6.478673 GTCCAAGACTTTTGGGTAATTTTGTG 59.521 38.462 6.13 0.00 39.96 3.33
6024 6586 6.381420 TCCAAGACTTTTGGGTAATTTTGTGA 59.619 34.615 6.13 0.00 39.96 3.58
6025 6587 7.070571 TCCAAGACTTTTGGGTAATTTTGTGAT 59.929 33.333 6.13 0.00 39.96 3.06
6026 6588 7.714813 CCAAGACTTTTGGGTAATTTTGTGATT 59.285 33.333 0.00 0.00 35.96 2.57
6027 6589 9.108284 CAAGACTTTTGGGTAATTTTGTGATTT 57.892 29.630 0.00 0.00 0.00 2.17
6028 6590 9.679661 AAGACTTTTGGGTAATTTTGTGATTTT 57.320 25.926 0.00 0.00 0.00 1.82
6029 6591 9.679661 AGACTTTTGGGTAATTTTGTGATTTTT 57.320 25.926 0.00 0.00 0.00 1.94
6030 6592 9.715123 GACTTTTGGGTAATTTTGTGATTTTTG 57.285 29.630 0.00 0.00 0.00 2.44
6031 6593 8.681806 ACTTTTGGGTAATTTTGTGATTTTTGG 58.318 29.630 0.00 0.00 0.00 3.28
6032 6594 6.625873 TTGGGTAATTTTGTGATTTTTGGC 57.374 33.333 0.00 0.00 0.00 4.52
6033 6595 5.934781 TGGGTAATTTTGTGATTTTTGGCT 58.065 33.333 0.00 0.00 0.00 4.75
6034 6596 6.360618 TGGGTAATTTTGTGATTTTTGGCTT 58.639 32.000 0.00 0.00 0.00 4.35
6035 6597 6.484977 TGGGTAATTTTGTGATTTTTGGCTTC 59.515 34.615 0.00 0.00 0.00 3.86
6036 6598 6.484977 GGGTAATTTTGTGATTTTTGGCTTCA 59.515 34.615 0.00 0.00 0.00 3.02
6037 6599 7.174772 GGGTAATTTTGTGATTTTTGGCTTCAT 59.825 33.333 0.00 0.00 0.00 2.57
6038 6600 8.016801 GGTAATTTTGTGATTTTTGGCTTCATG 58.983 33.333 0.00 0.00 0.00 3.07
6039 6601 7.804843 AATTTTGTGATTTTTGGCTTCATGA 57.195 28.000 0.00 0.00 0.00 3.07
6045 6607 5.287035 GTGATTTTTGGCTTCATGAATCGTC 59.713 40.000 8.96 0.03 30.90 4.20
6106 6708 5.986135 GTGGCCGTGATATTATGGAGATATC 59.014 44.000 9.88 0.00 37.13 1.63
6109 6711 7.508977 TGGCCGTGATATTATGGAGATATCATA 59.491 37.037 9.88 0.00 44.10 2.15
6119 6721 8.609617 TTATGGAGATATCATAAACCGGAGAT 57.390 34.615 9.46 5.91 35.08 2.75
6153 6755 7.361799 GGAACCATTTTAGTGTTACAGTGGATC 60.362 40.741 2.52 0.00 0.00 3.36
6194 6796 6.403866 AGAAATGTTTGAGTAATGTGCCAA 57.596 33.333 0.00 0.00 0.00 4.52
6242 6844 5.722021 AATCTAACAAACATCAACCACCC 57.278 39.130 0.00 0.00 0.00 4.61
6324 6926 3.107601 CCCAAAGAGTCTCCTCCACATA 58.892 50.000 0.00 0.00 38.58 2.29
6335 6937 4.707448 TCTCCTCCACATAGAGAAACACTC 59.293 45.833 0.00 0.00 45.22 3.51
6413 9179 4.511617 TTTGAACAACTGCAAACTGTCA 57.488 36.364 0.00 0.00 0.00 3.58
6488 9255 2.620585 GTTTTGATAGCCTGAGATGCCC 59.379 50.000 0.00 0.00 0.00 5.36
6512 9279 4.081531 GCTTGATGAAAAACCCATCCATGA 60.082 41.667 0.00 0.00 39.60 3.07
6520 9287 6.723515 TGAAAAACCCATCCATGACTTCATAA 59.276 34.615 0.00 0.00 34.26 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 153 1.740025 GAGGCTGCTACGCAAAGAAAT 59.260 47.619 0.00 0.00 38.41 2.17
215 217 0.175073 CACTAGTACAACGGGAGGGC 59.825 60.000 0.00 0.00 0.00 5.19
230 233 4.905429 AGTCAATGTTGGCATGTACACTA 58.095 39.130 0.00 0.00 34.61 2.74
249 252 4.816392 ACCACAAAGAAAACAACCAAGTC 58.184 39.130 0.00 0.00 0.00 3.01
368 371 4.077184 GGACCGTGGCATGTCCGA 62.077 66.667 19.29 0.00 41.48 4.55
371 374 1.741770 GAGTGGACCGTGGCATGTC 60.742 63.158 5.89 8.62 0.00 3.06
381 384 0.682209 AGGCATGCATTGAGTGGACC 60.682 55.000 21.36 0.00 0.00 4.46
385 388 3.181493 GGAAACTAGGCATGCATTGAGTG 60.181 47.826 21.36 4.41 0.00 3.51
415 418 3.825585 TGGTGCAAATGATACTTTCTGCA 59.174 39.130 0.00 0.00 0.00 4.41
457 593 2.038863 AGGTGTACAGTCCCATTGGA 57.961 50.000 3.62 0.00 38.75 3.53
514 681 9.253275 CGATTAAATTCATGTGAAATTTGTTGC 57.747 29.630 11.79 0.00 37.61 4.17
537 704 2.785868 GAGGCCAAGTGCAATCGAT 58.214 52.632 5.01 0.00 43.89 3.59
549 716 2.483013 CCGTTTGATATCTTCGAGGCCA 60.483 50.000 5.01 0.00 0.00 5.36
553 720 3.362237 GCGATCCGTTTGATATCTTCGAG 59.638 47.826 3.98 1.96 32.41 4.04
592 759 4.939271 TGACGTGACACAAATTCTCTACA 58.061 39.130 6.37 0.00 0.00 2.74
593 760 5.900339 TTGACGTGACACAAATTCTCTAC 57.100 39.130 6.37 0.00 0.00 2.59
603 772 1.396648 CTGCACTTTTGACGTGACACA 59.603 47.619 6.37 0.00 34.35 3.72
611 780 0.592247 CACGGTGCTGCACTTTTGAC 60.592 55.000 29.54 12.76 34.40 3.18
650 821 2.845967 GCGTGGACTTGCGAATAATTTG 59.154 45.455 0.00 0.00 0.00 2.32
651 822 2.486203 TGCGTGGACTTGCGAATAATTT 59.514 40.909 0.00 0.00 0.00 1.82
652 823 2.080693 TGCGTGGACTTGCGAATAATT 58.919 42.857 0.00 0.00 0.00 1.40
653 824 1.665679 CTGCGTGGACTTGCGAATAAT 59.334 47.619 0.00 0.00 0.00 1.28
654 825 1.075542 CTGCGTGGACTTGCGAATAA 58.924 50.000 0.00 0.00 0.00 1.40
655 826 0.739462 CCTGCGTGGACTTGCGAATA 60.739 55.000 0.00 0.00 38.35 1.75
656 827 2.034879 CCTGCGTGGACTTGCGAAT 61.035 57.895 0.00 0.00 38.35 3.34
657 828 2.089887 TACCTGCGTGGACTTGCGAA 62.090 55.000 2.38 0.00 39.71 4.70
658 829 2.486636 CTACCTGCGTGGACTTGCGA 62.487 60.000 2.38 0.00 39.71 5.10
659 830 2.048597 TACCTGCGTGGACTTGCG 60.049 61.111 2.38 0.00 39.71 4.85
660 831 0.320421 TTCTACCTGCGTGGACTTGC 60.320 55.000 2.38 0.00 39.71 4.01
724 895 1.537348 CGGATTCGACCTATTTGGCGA 60.537 52.381 0.00 0.00 40.59 5.54
740 911 2.492090 GTGCTGCTCTCGACGGAT 59.508 61.111 0.00 0.00 0.00 4.18
741 912 4.103103 CGTGCTGCTCTCGACGGA 62.103 66.667 0.00 0.00 33.89 4.69
743 914 4.103103 TCCGTGCTGCTCTCGACG 62.103 66.667 0.00 1.52 33.89 5.12
744 915 2.202544 CTCCGTGCTGCTCTCGAC 60.203 66.667 0.00 0.00 33.89 4.20
745 916 2.359975 TCTCCGTGCTGCTCTCGA 60.360 61.111 0.00 0.00 33.89 4.04
746 917 2.202544 GTCTCCGTGCTGCTCTCG 60.203 66.667 0.00 3.47 0.00 4.04
747 918 2.183046 GGTCTCCGTGCTGCTCTC 59.817 66.667 0.00 0.00 0.00 3.20
748 919 3.386237 GGGTCTCCGTGCTGCTCT 61.386 66.667 0.00 0.00 0.00 4.09
792 963 6.362551 GGGAGAGCTTTGTTTCGTAAATTTTC 59.637 38.462 0.00 0.00 0.00 2.29
793 964 6.213677 GGGAGAGCTTTGTTTCGTAAATTTT 58.786 36.000 0.00 0.00 0.00 1.82
831 1002 2.671682 GGGAGGTGGGTCAAGAGC 59.328 66.667 0.00 0.00 0.00 4.09
930 1111 0.479589 TTTGGGGGAATGGAGGGAGT 60.480 55.000 0.00 0.00 0.00 3.85
1235 1429 2.184579 CGAGGCCGAGGGAGAAAC 59.815 66.667 0.00 0.00 38.22 2.78
1236 1430 3.075005 CCGAGGCCGAGGGAGAAA 61.075 66.667 11.21 0.00 38.22 2.52
1501 1708 4.397832 TAGGGTTCCGGCGGCAAC 62.398 66.667 23.83 23.88 0.00 4.17
1502 1709 4.090588 CTAGGGTTCCGGCGGCAA 62.091 66.667 23.83 13.88 0.00 4.52
1545 1752 2.420372 CCTCTTCAGTCGATTCGTCTCA 59.580 50.000 5.89 0.00 0.00 3.27
1686 1893 4.796231 CGGTTCGTCTCCGGCTGG 62.796 72.222 4.71 4.71 43.68 4.85
1737 1944 1.811645 GAGGAGGAGGCGCCATAGAC 61.812 65.000 31.54 15.78 40.02 2.59
1898 2126 4.819630 TCCACAAATAGAGACAAGCGTTTT 59.180 37.500 0.00 0.00 0.00 2.43
1963 2191 8.834465 AGAGATAGTAAATCACAATTGCATGAC 58.166 33.333 5.05 1.05 0.00 3.06
1989 2332 6.712179 TTCATTGATTTATGCAGGCATGTA 57.288 33.333 16.61 0.00 37.82 2.29
2031 2374 6.262944 TGAATCCGCTTTGCATATTTCTATGT 59.737 34.615 0.00 0.00 37.61 2.29
2265 2611 5.977129 AGGTAAATTTCAGCTGTTTTTGTCG 59.023 36.000 14.67 0.00 0.00 4.35
2294 2640 5.088739 CGAAATTAATCTGTGTGCAAGGAC 58.911 41.667 0.00 0.00 0.00 3.85
2295 2641 4.379394 GCGAAATTAATCTGTGTGCAAGGA 60.379 41.667 0.00 0.00 0.00 3.36
2311 2657 5.762825 ACAGCAGATGATATTGCGAAATT 57.237 34.783 0.00 0.00 44.80 1.82
2357 2703 7.167302 CGAAACTGTTTATTTCTCATTGCACAA 59.833 33.333 5.64 0.00 34.50 3.33
2360 2706 6.734137 ACGAAACTGTTTATTTCTCATTGCA 58.266 32.000 5.64 0.00 34.50 4.08
2419 2765 7.878644 TCATGGATCAAAATTGCAATTGAAAGA 59.121 29.630 24.74 18.60 38.88 2.52
2529 2878 4.195488 GTTTACCGGCGCGCGTAC 62.195 66.667 32.35 22.87 0.00 3.67
2533 2882 3.849953 CTCTGTTTACCGGCGCGC 61.850 66.667 25.94 25.94 0.00 6.86
2534 2883 1.562575 AAACTCTGTTTACCGGCGCG 61.563 55.000 0.00 0.00 0.00 6.86
2535 2884 0.589708 AAAACTCTGTTTACCGGCGC 59.410 50.000 0.00 0.00 0.00 6.53
2575 2925 0.599558 TGCTCTGGCAAATGAAGTGC 59.400 50.000 0.00 0.00 46.36 4.40
2588 2938 2.758736 ACTAGAGGCAGTTTGCTCTG 57.241 50.000 0.00 0.00 44.28 3.35
2612 2962 4.881019 TGCTTAGGCTAGGAGATGATTC 57.119 45.455 7.97 0.00 39.59 2.52
2617 2967 4.904251 TCTGAATTGCTTAGGCTAGGAGAT 59.096 41.667 7.97 0.00 39.59 2.75
2618 2968 4.290093 TCTGAATTGCTTAGGCTAGGAGA 58.710 43.478 7.97 0.00 39.59 3.71
2619 2969 4.343526 TCTCTGAATTGCTTAGGCTAGGAG 59.656 45.833 7.97 0.00 39.59 3.69
2634 2985 7.275888 TGCTGTTTACACAATTTCTCTGAAT 57.724 32.000 0.00 0.00 30.36 2.57
2827 3182 2.535166 CACCAAACGAAAACACTGCATG 59.465 45.455 0.00 0.00 0.00 4.06
2948 3303 7.391554 TCATTTCAGAATGCTACAAGCTAAACT 59.608 33.333 0.03 0.00 42.97 2.66
2988 3343 1.985159 ACCAGGATTTGCTCACAGGTA 59.015 47.619 0.00 0.00 0.00 3.08
3133 3488 5.519206 CGCTATTTACTCCCTTTACTGACAC 59.481 44.000 0.00 0.00 0.00 3.67
3290 3648 6.810911 TGCAAGTAGATAAGAGAAGATGACC 58.189 40.000 0.00 0.00 0.00 4.02
3372 3730 1.726791 CATCAGTACACTGCGGTTCAC 59.273 52.381 0.00 0.00 43.46 3.18
3459 3817 2.820197 TCGTGCAGCTTTCTTCTAGAGA 59.180 45.455 0.00 0.00 0.00 3.10
3515 3873 9.771534 TCCGAATCAACAAAATAAATTTTCCTT 57.228 25.926 0.00 0.00 37.86 3.36
3575 3933 0.813821 GACTCATGGGCTTCTTTGGC 59.186 55.000 0.00 0.00 0.00 4.52
3687 4045 8.349983 GTCCTTCAGTATATCTTCACTCTTCTC 58.650 40.741 0.00 0.00 0.00 2.87
3749 4107 6.998074 AGTGTTGGACAGATTTGAAATACTCA 59.002 34.615 0.00 0.00 0.00 3.41
4025 4383 6.911250 TCTTCTACACTGTACTCATTTCCA 57.089 37.500 0.00 0.00 0.00 3.53
4304 4662 5.758924 ACTGGAACTCTGAAAATTAAACGC 58.241 37.500 0.00 0.00 0.00 4.84
4343 4701 2.819608 GCAGGGTAGCAATCAAACAAGA 59.180 45.455 0.00 0.00 0.00 3.02
4468 4826 2.216046 AGTGATGAATGCATAGCACGG 58.784 47.619 11.17 0.00 43.04 4.94
4469 4827 3.614588 CAAGTGATGAATGCATAGCACG 58.385 45.455 11.17 0.00 43.04 5.34
4669 5027 7.938490 TGGCTTTCATATATGAGCACAGAATTA 59.062 33.333 21.79 1.90 38.19 1.40
4672 5030 5.683681 TGGCTTTCATATATGAGCACAGAA 58.316 37.500 21.79 10.67 38.19 3.02
4692 5050 1.336240 GCAGAATGGCGGATAAATGGC 60.336 52.381 0.00 0.00 35.86 4.40
4722 5080 9.988815 GCTCAACTGATTTATCTTCTCCTATTA 57.011 33.333 0.00 0.00 0.00 0.98
4766 5206 4.467769 CATAGGAGCCAAACAATCATCCT 58.532 43.478 0.00 0.00 40.26 3.24
4786 5226 7.709149 ATTTTCAGCTTAGGTTTTAGAGCAT 57.291 32.000 0.00 0.00 37.59 3.79
4787 5227 7.883311 AGTATTTTCAGCTTAGGTTTTAGAGCA 59.117 33.333 0.00 0.00 37.59 4.26
4892 5332 7.086685 TCCCTACTTTTCTTACTCCAACAAT 57.913 36.000 0.00 0.00 0.00 2.71
4897 5337 5.019657 TCCTCCCTACTTTTCTTACTCCA 57.980 43.478 0.00 0.00 0.00 3.86
4920 5360 3.560068 CGGTAAGCATCCAACTGGTAATC 59.440 47.826 0.00 0.00 36.34 1.75
4988 5428 2.906691 ATCTCATGTAGTCTGGCTGC 57.093 50.000 0.00 0.00 0.00 5.25
4990 5430 4.397417 GCAAAAATCTCATGTAGTCTGGCT 59.603 41.667 0.00 0.00 0.00 4.75
5000 5440 2.159142 GGGGAGCAGCAAAAATCTCATG 60.159 50.000 0.00 0.00 0.00 3.07
5001 5441 2.105766 GGGGAGCAGCAAAAATCTCAT 58.894 47.619 0.00 0.00 0.00 2.90
5011 5451 0.394762 CATTTAGCAGGGGAGCAGCA 60.395 55.000 0.00 0.00 36.85 4.41
5012 5452 0.107017 TCATTTAGCAGGGGAGCAGC 60.107 55.000 0.00 0.00 36.85 5.25
5021 5461 7.147949 ACCAAATCAATTCTCCTCATTTAGCAG 60.148 37.037 0.00 0.00 0.00 4.24
5026 5466 7.787623 AGAACCAAATCAATTCTCCTCATTT 57.212 32.000 0.00 0.00 0.00 2.32
5043 5483 0.181587 TGCGTGGAAAGGAGAACCAA 59.818 50.000 0.00 0.00 38.94 3.67
5059 5499 1.392589 ACTGCCCAAATATCCTTGCG 58.607 50.000 0.00 0.00 0.00 4.85
5070 5510 3.084536 TCAATGCTCATAACTGCCCAA 57.915 42.857 0.00 0.00 0.00 4.12
5076 5516 5.922544 GCAAGTTTGTTCAATGCTCATAACT 59.077 36.000 3.37 0.00 34.29 2.24
5162 5605 5.355630 TGTGGTTTCTTTGAATCTCGAACAA 59.644 36.000 0.00 0.00 0.00 2.83
5167 5610 4.811555 TGTGTGGTTTCTTTGAATCTCG 57.188 40.909 0.00 0.00 0.00 4.04
5192 5635 2.168326 TAGCACACACCATCACACAG 57.832 50.000 0.00 0.00 0.00 3.66
5194 5637 3.366273 CCAAATAGCACACACCATCACAC 60.366 47.826 0.00 0.00 0.00 3.82
5209 5654 4.289245 ACATTTCCATGGACCCCAAATAG 58.711 43.478 15.91 8.56 36.95 1.73
5218 5663 7.206687 TGTTTTTCTACAACATTTCCATGGAC 58.793 34.615 15.91 0.00 34.27 4.02
5317 5763 1.799933 AAGGTTGTTCCAATTGGCCA 58.200 45.000 20.33 15.23 39.02 5.36
5325 5771 4.105697 AGTGAAGGGAATAAGGTTGTTCCA 59.894 41.667 17.15 0.00 46.58 3.53
5364 5810 5.914033 TGCAGGGAACATGTAGTTAGATAC 58.086 41.667 0.00 0.00 41.51 2.24
5370 5816 1.985159 TCCTGCAGGGAACATGTAGTT 59.015 47.619 32.23 0.00 44.93 2.24
5454 5900 2.747855 GAACCCCGCTTGGCTCTG 60.748 66.667 0.00 0.00 0.00 3.35
5484 5930 1.609072 GTGGAACTGGAACTGGCTTTC 59.391 52.381 0.00 0.00 0.00 2.62
5487 5933 0.109342 CTGTGGAACTGGAACTGGCT 59.891 55.000 0.00 0.00 38.04 4.75
5544 5990 0.178990 GCCACCAACAGACCTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
5547 5993 2.034221 GGCCACCAACAGACCTCC 59.966 66.667 0.00 0.00 0.00 4.30
5572 6018 9.604626 CAGTGAAATCTTCTCTATTGTGAAAAC 57.395 33.333 0.00 0.00 32.67 2.43
5634 6083 6.929606 ACCGTAGCATAATCTTTTGTATCTCC 59.070 38.462 0.00 0.00 0.00 3.71
5668 6117 3.876914 GTGTGTTCACATTGACAGAGGAA 59.123 43.478 8.87 0.00 43.37 3.36
5681 6130 3.854286 CGAAGGTTGTAGTGTGTTCAC 57.146 47.619 0.00 0.00 44.15 3.18
5708 6157 8.880878 TTAAAATCACCTTAACAAAGAAAGGC 57.119 30.769 1.06 0.00 45.18 4.35
5722 6171 1.353022 TGCCCGTCCTTAAAATCACCT 59.647 47.619 0.00 0.00 0.00 4.00
5723 6172 1.471287 GTGCCCGTCCTTAAAATCACC 59.529 52.381 0.00 0.00 0.00 4.02
5724 6173 1.471287 GGTGCCCGTCCTTAAAATCAC 59.529 52.381 0.00 0.00 0.00 3.06
5725 6174 1.353022 AGGTGCCCGTCCTTAAAATCA 59.647 47.619 0.00 0.00 30.18 2.57
5727 6176 2.560981 CAAAGGTGCCCGTCCTTAAAAT 59.439 45.455 0.00 0.00 43.50 1.82
5729 6178 1.611519 CAAAGGTGCCCGTCCTTAAA 58.388 50.000 0.00 0.00 43.50 1.52
5730 6179 0.250989 CCAAAGGTGCCCGTCCTTAA 60.251 55.000 0.00 0.00 43.50 1.85
5752 6243 4.694760 TCATATCCATCACCTCCACAAG 57.305 45.455 0.00 0.00 0.00 3.16
5755 6246 4.630644 ACATCATATCCATCACCTCCAC 57.369 45.455 0.00 0.00 0.00 4.02
5771 6262 4.129380 GCATTGCACTACCTCATACATCA 58.871 43.478 3.15 0.00 0.00 3.07
5774 6265 3.625649 TGCATTGCACTACCTCATACA 57.374 42.857 7.38 0.00 31.71 2.29
5775 6266 4.963276 TTTGCATTGCACTACCTCATAC 57.037 40.909 11.66 0.00 38.71 2.39
5777 6268 3.131577 CCATTTGCATTGCACTACCTCAT 59.868 43.478 11.66 0.00 38.71 2.90
5778 6269 2.492881 CCATTTGCATTGCACTACCTCA 59.507 45.455 11.66 0.00 38.71 3.86
5779 6270 2.159198 CCCATTTGCATTGCACTACCTC 60.159 50.000 11.66 0.00 38.71 3.85
5780 6271 1.826720 CCCATTTGCATTGCACTACCT 59.173 47.619 11.66 0.00 38.71 3.08
5787 6349 1.087771 GCTGAGCCCATTTGCATTGC 61.088 55.000 0.46 0.46 0.00 3.56
5791 6353 1.609635 CCATGCTGAGCCCATTTGCA 61.610 55.000 0.23 0.00 38.05 4.08
5795 6357 0.554305 TCATCCATGCTGAGCCCATT 59.446 50.000 0.23 0.00 0.00 3.16
5796 6358 0.554305 TTCATCCATGCTGAGCCCAT 59.446 50.000 0.23 0.00 0.00 4.00
5799 6361 1.760192 ACTTTCATCCATGCTGAGCC 58.240 50.000 0.23 0.00 0.00 4.70
5800 6362 3.252701 CCATACTTTCATCCATGCTGAGC 59.747 47.826 0.00 0.00 0.00 4.26
5812 6374 3.009033 CCACCTTGTCTCCCATACTTTCA 59.991 47.826 0.00 0.00 0.00 2.69
5813 6375 3.610911 CCACCTTGTCTCCCATACTTTC 58.389 50.000 0.00 0.00 0.00 2.62
5815 6377 1.916181 CCCACCTTGTCTCCCATACTT 59.084 52.381 0.00 0.00 0.00 2.24
5816 6378 1.203440 ACCCACCTTGTCTCCCATACT 60.203 52.381 0.00 0.00 0.00 2.12
5817 6379 1.286248 ACCCACCTTGTCTCCCATAC 58.714 55.000 0.00 0.00 0.00 2.39
5819 6381 1.584724 CTACCCACCTTGTCTCCCAT 58.415 55.000 0.00 0.00 0.00 4.00
5820 6382 0.546747 CCTACCCACCTTGTCTCCCA 60.547 60.000 0.00 0.00 0.00 4.37
5821 6383 0.252558 TCCTACCCACCTTGTCTCCC 60.253 60.000 0.00 0.00 0.00 4.30
5822 6384 1.196012 CTCCTACCCACCTTGTCTCC 58.804 60.000 0.00 0.00 0.00 3.71
5824 6386 0.790993 TCCTCCTACCCACCTTGTCT 59.209 55.000 0.00 0.00 0.00 3.41
5825 6387 0.903236 GTCCTCCTACCCACCTTGTC 59.097 60.000 0.00 0.00 0.00 3.18
5826 6388 0.192566 TGTCCTCCTACCCACCTTGT 59.807 55.000 0.00 0.00 0.00 3.16
5827 6389 1.210478 CATGTCCTCCTACCCACCTTG 59.790 57.143 0.00 0.00 0.00 3.61
5829 6391 0.983378 GCATGTCCTCCTACCCACCT 60.983 60.000 0.00 0.00 0.00 4.00
5830 6392 1.527370 GCATGTCCTCCTACCCACC 59.473 63.158 0.00 0.00 0.00 4.61
5831 6393 0.983378 AGGCATGTCCTCCTACCCAC 60.983 60.000 0.00 0.00 43.20 4.61
5832 6394 0.639943 TAGGCATGTCCTCCTACCCA 59.360 55.000 11.35 0.00 43.20 4.51
5833 6395 1.343069 CTAGGCATGTCCTCCTACCC 58.657 60.000 11.35 0.00 43.20 3.69
5834 6396 0.682292 GCTAGGCATGTCCTCCTACC 59.318 60.000 11.35 0.00 43.20 3.18
5835 6397 1.342819 CAGCTAGGCATGTCCTCCTAC 59.657 57.143 11.35 1.78 43.20 3.18
5836 6398 1.217942 TCAGCTAGGCATGTCCTCCTA 59.782 52.381 11.35 4.59 43.20 2.94
5837 6399 0.031716 TCAGCTAGGCATGTCCTCCT 60.032 55.000 11.35 3.63 43.20 3.69
5838 6400 1.055040 ATCAGCTAGGCATGTCCTCC 58.945 55.000 11.35 5.61 43.20 4.30
5839 6401 2.926778 AATCAGCTAGGCATGTCCTC 57.073 50.000 11.35 0.53 43.20 3.71
5841 6403 2.802816 CGTAAATCAGCTAGGCATGTCC 59.197 50.000 0.00 0.00 0.00 4.02
5842 6404 2.221981 GCGTAAATCAGCTAGGCATGTC 59.778 50.000 0.00 0.00 31.91 3.06
5843 6405 2.158900 AGCGTAAATCAGCTAGGCATGT 60.159 45.455 0.00 0.00 42.60 3.21
5844 6406 2.487934 AGCGTAAATCAGCTAGGCATG 58.512 47.619 1.40 0.00 42.60 4.06
5845 6407 2.918712 AGCGTAAATCAGCTAGGCAT 57.081 45.000 1.40 0.00 42.60 4.40
5846 6408 2.550978 GAAGCGTAAATCAGCTAGGCA 58.449 47.619 1.40 0.00 43.78 4.75
5847 6409 1.867865 GGAAGCGTAAATCAGCTAGGC 59.132 52.381 0.00 0.00 43.78 3.93
5848 6410 3.179443 TGGAAGCGTAAATCAGCTAGG 57.821 47.619 0.00 0.00 43.78 3.02
5849 6411 4.631813 ACTTTGGAAGCGTAAATCAGCTAG 59.368 41.667 0.00 0.00 43.78 3.42
5850 6412 4.575885 ACTTTGGAAGCGTAAATCAGCTA 58.424 39.130 0.00 0.00 43.78 3.32
5851 6413 3.412386 ACTTTGGAAGCGTAAATCAGCT 58.588 40.909 0.00 0.00 46.97 4.24
5852 6414 3.831715 ACTTTGGAAGCGTAAATCAGC 57.168 42.857 0.00 0.00 0.00 4.26
5867 6429 1.201414 GTAACCGGGATGCCAACTTTG 59.799 52.381 6.32 0.00 0.00 2.77
5868 6430 1.074889 AGTAACCGGGATGCCAACTTT 59.925 47.619 6.32 0.00 0.00 2.66
5869 6431 0.696501 AGTAACCGGGATGCCAACTT 59.303 50.000 6.32 0.00 0.00 2.66
5870 6432 1.485066 CTAGTAACCGGGATGCCAACT 59.515 52.381 6.32 3.54 0.00 3.16
5871 6433 1.949465 CTAGTAACCGGGATGCCAAC 58.051 55.000 6.32 0.00 0.00 3.77
5872 6434 0.179468 GCTAGTAACCGGGATGCCAA 59.821 55.000 6.32 0.00 0.00 4.52
5873 6435 1.692173 GGCTAGTAACCGGGATGCCA 61.692 60.000 6.32 0.00 38.79 4.92
5874 6436 1.070957 GGCTAGTAACCGGGATGCC 59.929 63.158 6.32 6.91 0.00 4.40
5875 6437 0.532196 GTGGCTAGTAACCGGGATGC 60.532 60.000 6.32 0.00 0.00 3.91
5876 6438 0.828022 TGTGGCTAGTAACCGGGATG 59.172 55.000 6.32 0.00 0.00 3.51
5877 6439 1.692519 GATGTGGCTAGTAACCGGGAT 59.307 52.381 6.32 0.00 0.00 3.85
5878 6440 1.117150 GATGTGGCTAGTAACCGGGA 58.883 55.000 6.32 0.00 0.00 5.14
5879 6441 0.249322 CGATGTGGCTAGTAACCGGG 60.249 60.000 6.32 0.00 0.00 5.73
5880 6442 0.249322 CCGATGTGGCTAGTAACCGG 60.249 60.000 0.00 0.00 0.00 5.28
5881 6443 0.742505 TCCGATGTGGCTAGTAACCG 59.257 55.000 0.00 0.00 37.80 4.44
5882 6444 2.429610 TCTTCCGATGTGGCTAGTAACC 59.570 50.000 0.00 0.00 37.80 2.85
5883 6445 3.795623 TCTTCCGATGTGGCTAGTAAC 57.204 47.619 0.00 0.00 37.80 2.50
5884 6446 6.474140 TTAATCTTCCGATGTGGCTAGTAA 57.526 37.500 0.00 0.00 37.80 2.24
5885 6447 6.474140 TTTAATCTTCCGATGTGGCTAGTA 57.526 37.500 0.00 0.00 37.80 1.82
5886 6448 5.353394 TTTAATCTTCCGATGTGGCTAGT 57.647 39.130 0.00 0.00 37.80 2.57
5887 6449 6.867662 ATTTTAATCTTCCGATGTGGCTAG 57.132 37.500 0.00 0.00 37.80 3.42
5888 6450 8.617809 GTTTATTTTAATCTTCCGATGTGGCTA 58.382 33.333 0.00 0.00 37.80 3.93
5889 6451 7.122055 TGTTTATTTTAATCTTCCGATGTGGCT 59.878 33.333 0.00 0.00 37.80 4.75
5890 6452 7.254852 TGTTTATTTTAATCTTCCGATGTGGC 58.745 34.615 0.00 0.00 37.80 5.01
5891 6453 7.915397 CCTGTTTATTTTAATCTTCCGATGTGG 59.085 37.037 0.00 0.00 40.09 4.17
5892 6454 7.915397 CCCTGTTTATTTTAATCTTCCGATGTG 59.085 37.037 0.00 0.00 0.00 3.21
5893 6455 7.614192 ACCCTGTTTATTTTAATCTTCCGATGT 59.386 33.333 0.00 0.00 0.00 3.06
5894 6456 7.996385 ACCCTGTTTATTTTAATCTTCCGATG 58.004 34.615 0.00 0.00 0.00 3.84
5895 6457 9.689501 TTACCCTGTTTATTTTAATCTTCCGAT 57.310 29.630 0.00 0.00 0.00 4.18
5896 6458 9.517868 TTTACCCTGTTTATTTTAATCTTCCGA 57.482 29.630 0.00 0.00 0.00 4.55
5897 6459 9.563898 GTTTACCCTGTTTATTTTAATCTTCCG 57.436 33.333 0.00 0.00 0.00 4.30
5906 6468 8.968969 TGTTACAGTGTTTACCCTGTTTATTTT 58.031 29.630 0.00 0.00 41.85 1.82
5907 6469 8.522542 TGTTACAGTGTTTACCCTGTTTATTT 57.477 30.769 0.00 0.00 41.85 1.40
5908 6470 8.700439 ATGTTACAGTGTTTACCCTGTTTATT 57.300 30.769 0.00 0.00 41.85 1.40
5909 6471 9.969001 ATATGTTACAGTGTTTACCCTGTTTAT 57.031 29.630 0.00 0.54 41.85 1.40
5910 6472 9.796180 AATATGTTACAGTGTTTACCCTGTTTA 57.204 29.630 0.00 0.00 41.85 2.01
5911 6473 8.700439 AATATGTTACAGTGTTTACCCTGTTT 57.300 30.769 0.00 0.00 41.85 2.83
5912 6474 8.700439 AAATATGTTACAGTGTTTACCCTGTT 57.300 30.769 0.00 0.00 41.85 3.16
5913 6475 9.223099 GTAAATATGTTACAGTGTTTACCCTGT 57.777 33.333 0.00 3.59 43.90 4.00
5914 6476 9.221933 TGTAAATATGTTACAGTGTTTACCCTG 57.778 33.333 18.35 0.00 33.41 4.45
5915 6477 9.796180 TTGTAAATATGTTACAGTGTTTACCCT 57.204 29.630 18.35 0.00 36.40 4.34
5933 6495 9.689501 CCACCTTTTACCCTCTATTTGTAAATA 57.310 33.333 0.00 0.00 35.19 1.40
5934 6496 8.395605 TCCACCTTTTACCCTCTATTTGTAAAT 58.604 33.333 0.00 0.00 35.19 1.40
5935 6497 7.757611 TCCACCTTTTACCCTCTATTTGTAAA 58.242 34.615 0.00 0.00 33.83 2.01
5936 6498 7.332433 TCCACCTTTTACCCTCTATTTGTAA 57.668 36.000 0.00 0.00 0.00 2.41
5937 6499 6.956102 TCCACCTTTTACCCTCTATTTGTA 57.044 37.500 0.00 0.00 0.00 2.41
5938 6500 5.853572 TCCACCTTTTACCCTCTATTTGT 57.146 39.130 0.00 0.00 0.00 2.83
5939 6501 6.246163 ACTTCCACCTTTTACCCTCTATTTG 58.754 40.000 0.00 0.00 0.00 2.32
5940 6502 6.045106 TGACTTCCACCTTTTACCCTCTATTT 59.955 38.462 0.00 0.00 0.00 1.40
5941 6503 5.550403 TGACTTCCACCTTTTACCCTCTATT 59.450 40.000 0.00 0.00 0.00 1.73
5942 6504 5.045797 GTGACTTCCACCTTTTACCCTCTAT 60.046 44.000 0.00 0.00 39.86 1.98
5943 6505 4.285260 GTGACTTCCACCTTTTACCCTCTA 59.715 45.833 0.00 0.00 39.86 2.43
5944 6506 3.072622 GTGACTTCCACCTTTTACCCTCT 59.927 47.826 0.00 0.00 39.86 3.69
5945 6507 3.072622 AGTGACTTCCACCTTTTACCCTC 59.927 47.826 0.00 0.00 46.87 4.30
5946 6508 3.053826 AGTGACTTCCACCTTTTACCCT 58.946 45.455 0.00 0.00 46.87 4.34
5947 6509 3.072622 AGAGTGACTTCCACCTTTTACCC 59.927 47.826 0.00 0.00 46.87 3.69
5948 6510 4.353383 AGAGTGACTTCCACCTTTTACC 57.647 45.455 0.00 0.00 46.87 2.85
5949 6511 7.981102 AATTAGAGTGACTTCCACCTTTTAC 57.019 36.000 0.00 0.00 46.87 2.01
5951 6513 8.990163 TTAAATTAGAGTGACTTCCACCTTTT 57.010 30.769 0.00 0.00 46.87 2.27
5952 6514 9.588096 AATTAAATTAGAGTGACTTCCACCTTT 57.412 29.630 0.00 0.00 46.87 3.11
5953 6515 9.014297 CAATTAAATTAGAGTGACTTCCACCTT 57.986 33.333 0.00 0.00 46.87 3.50
5954 6516 8.164070 ACAATTAAATTAGAGTGACTTCCACCT 58.836 33.333 0.00 0.00 46.87 4.00
5955 6517 8.336801 ACAATTAAATTAGAGTGACTTCCACC 57.663 34.615 0.00 0.00 46.87 4.61
5958 6520 9.937175 GCATACAATTAAATTAGAGTGACTTCC 57.063 33.333 0.00 0.00 0.00 3.46
5971 6533 9.236006 ACAGAGTTGAGAAGCATACAATTAAAT 57.764 29.630 0.00 0.00 0.00 1.40
5972 6534 8.506437 CACAGAGTTGAGAAGCATACAATTAAA 58.494 33.333 0.00 0.00 0.00 1.52
5973 6535 7.661437 ACACAGAGTTGAGAAGCATACAATTAA 59.339 33.333 0.00 0.00 0.00 1.40
5974 6536 7.161404 ACACAGAGTTGAGAAGCATACAATTA 58.839 34.615 0.00 0.00 0.00 1.40
5975 6537 6.000219 ACACAGAGTTGAGAAGCATACAATT 59.000 36.000 0.00 0.00 0.00 2.32
5976 6538 5.555017 ACACAGAGTTGAGAAGCATACAAT 58.445 37.500 0.00 0.00 0.00 2.71
5977 6539 4.960938 ACACAGAGTTGAGAAGCATACAA 58.039 39.130 0.00 0.00 0.00 2.41
5978 6540 4.560128 GACACAGAGTTGAGAAGCATACA 58.440 43.478 0.00 0.00 0.00 2.29
5979 6541 3.929610 GGACACAGAGTTGAGAAGCATAC 59.070 47.826 0.00 0.00 0.00 2.39
5980 6542 3.578282 TGGACACAGAGTTGAGAAGCATA 59.422 43.478 0.00 0.00 0.00 3.14
5981 6543 2.369860 TGGACACAGAGTTGAGAAGCAT 59.630 45.455 0.00 0.00 0.00 3.79
5982 6544 1.762370 TGGACACAGAGTTGAGAAGCA 59.238 47.619 0.00 0.00 0.00 3.91
5983 6545 2.533266 TGGACACAGAGTTGAGAAGC 57.467 50.000 0.00 0.00 0.00 3.86
5984 6546 4.054671 GTCTTGGACACAGAGTTGAGAAG 58.945 47.826 0.00 0.00 32.09 2.85
5985 6547 3.706594 AGTCTTGGACACAGAGTTGAGAA 59.293 43.478 0.52 0.00 34.60 2.87
5986 6548 3.300388 AGTCTTGGACACAGAGTTGAGA 58.700 45.455 0.52 0.00 34.60 3.27
5987 6549 3.742433 AGTCTTGGACACAGAGTTGAG 57.258 47.619 0.52 0.00 34.60 3.02
5988 6550 4.487714 AAAGTCTTGGACACAGAGTTGA 57.512 40.909 0.52 0.00 34.60 3.18
5989 6551 4.201950 CCAAAAGTCTTGGACACAGAGTTG 60.202 45.833 0.00 0.00 42.06 3.16
5990 6552 3.947834 CCAAAAGTCTTGGACACAGAGTT 59.052 43.478 0.00 0.00 42.06 3.01
5991 6553 3.545703 CCAAAAGTCTTGGACACAGAGT 58.454 45.455 0.00 0.00 42.06 3.24
5992 6554 2.880890 CCCAAAAGTCTTGGACACAGAG 59.119 50.000 0.00 0.00 42.06 3.35
5993 6555 2.241176 ACCCAAAAGTCTTGGACACAGA 59.759 45.455 0.00 0.00 42.06 3.41
5994 6556 2.654863 ACCCAAAAGTCTTGGACACAG 58.345 47.619 0.00 0.00 42.06 3.66
5995 6557 2.818751 ACCCAAAAGTCTTGGACACA 57.181 45.000 0.00 0.00 42.06 3.72
5996 6558 5.784578 AATTACCCAAAAGTCTTGGACAC 57.215 39.130 0.00 0.00 42.06 3.67
5997 6559 6.155393 ACAAAATTACCCAAAAGTCTTGGACA 59.845 34.615 0.00 0.00 42.06 4.02
5998 6560 6.478673 CACAAAATTACCCAAAAGTCTTGGAC 59.521 38.462 0.00 0.00 42.06 4.02
5999 6561 6.381420 TCACAAAATTACCCAAAAGTCTTGGA 59.619 34.615 0.00 0.00 42.06 3.53
6000 6562 6.578023 TCACAAAATTACCCAAAAGTCTTGG 58.422 36.000 0.00 0.00 39.25 3.61
6001 6563 8.661352 AATCACAAAATTACCCAAAAGTCTTG 57.339 30.769 0.00 0.00 0.00 3.02
6002 6564 9.679661 AAAATCACAAAATTACCCAAAAGTCTT 57.320 25.926 0.00 0.00 0.00 3.01
6003 6565 9.679661 AAAAATCACAAAATTACCCAAAAGTCT 57.320 25.926 0.00 0.00 0.00 3.24
6004 6566 9.715123 CAAAAATCACAAAATTACCCAAAAGTC 57.285 29.630 0.00 0.00 0.00 3.01
6005 6567 8.681806 CCAAAAATCACAAAATTACCCAAAAGT 58.318 29.630 0.00 0.00 0.00 2.66
6006 6568 7.647318 GCCAAAAATCACAAAATTACCCAAAAG 59.353 33.333 0.00 0.00 0.00 2.27
6007 6569 7.340487 AGCCAAAAATCACAAAATTACCCAAAA 59.660 29.630 0.00 0.00 0.00 2.44
6008 6570 6.830838 AGCCAAAAATCACAAAATTACCCAAA 59.169 30.769 0.00 0.00 0.00 3.28
6009 6571 6.360618 AGCCAAAAATCACAAAATTACCCAA 58.639 32.000 0.00 0.00 0.00 4.12
6010 6572 5.934781 AGCCAAAAATCACAAAATTACCCA 58.065 33.333 0.00 0.00 0.00 4.51
6011 6573 6.484977 TGAAGCCAAAAATCACAAAATTACCC 59.515 34.615 0.00 0.00 0.00 3.69
6012 6574 7.489574 TGAAGCCAAAAATCACAAAATTACC 57.510 32.000 0.00 0.00 0.00 2.85
6013 6575 8.772705 TCATGAAGCCAAAAATCACAAAATTAC 58.227 29.630 0.00 0.00 0.00 1.89
6014 6576 8.899427 TCATGAAGCCAAAAATCACAAAATTA 57.101 26.923 0.00 0.00 0.00 1.40
6015 6577 7.804843 TCATGAAGCCAAAAATCACAAAATT 57.195 28.000 0.00 0.00 0.00 1.82
6016 6578 7.804843 TTCATGAAGCCAAAAATCACAAAAT 57.195 28.000 3.38 0.00 0.00 1.82
6017 6579 7.307278 CGATTCATGAAGCCAAAAATCACAAAA 60.307 33.333 17.58 0.00 31.83 2.44
6018 6580 6.145858 CGATTCATGAAGCCAAAAATCACAAA 59.854 34.615 17.58 0.00 31.83 2.83
6019 6581 5.634439 CGATTCATGAAGCCAAAAATCACAA 59.366 36.000 17.58 0.00 31.83 3.33
6020 6582 5.162794 CGATTCATGAAGCCAAAAATCACA 58.837 37.500 17.58 0.00 31.83 3.58
6021 6583 5.163513 ACGATTCATGAAGCCAAAAATCAC 58.836 37.500 17.58 0.00 31.83 3.06
6022 6584 5.048154 TGACGATTCATGAAGCCAAAAATCA 60.048 36.000 17.58 9.08 31.83 2.57
6023 6585 5.401550 TGACGATTCATGAAGCCAAAAATC 58.598 37.500 17.58 4.90 0.00 2.17
6024 6586 5.389859 TGACGATTCATGAAGCCAAAAAT 57.610 34.783 17.58 0.00 0.00 1.82
6025 6587 4.844998 TGACGATTCATGAAGCCAAAAA 57.155 36.364 17.58 0.00 0.00 1.94
6026 6588 4.844998 TTGACGATTCATGAAGCCAAAA 57.155 36.364 17.58 6.78 0.00 2.44
6027 6589 4.458642 TCATTGACGATTCATGAAGCCAAA 59.541 37.500 17.58 9.89 0.00 3.28
6028 6590 4.009002 TCATTGACGATTCATGAAGCCAA 58.991 39.130 17.58 16.02 0.00 4.52
6029 6591 3.608796 TCATTGACGATTCATGAAGCCA 58.391 40.909 17.58 8.21 0.00 4.75
6030 6592 4.825546 ATCATTGACGATTCATGAAGCC 57.174 40.909 17.58 9.01 0.00 4.35
6031 6593 6.800408 CCAATATCATTGACGATTCATGAAGC 59.200 38.462 13.73 13.73 0.00 3.86
6032 6594 8.013947 GTCCAATATCATTGACGATTCATGAAG 58.986 37.037 14.54 3.71 0.00 3.02
6033 6595 7.498570 TGTCCAATATCATTGACGATTCATGAA 59.501 33.333 11.26 11.26 0.00 2.57
6034 6596 6.991531 TGTCCAATATCATTGACGATTCATGA 59.008 34.615 0.00 0.00 0.00 3.07
6035 6597 7.193377 TGTCCAATATCATTGACGATTCATG 57.807 36.000 0.46 0.00 0.00 3.07
6036 6598 7.991084 ATGTCCAATATCATTGACGATTCAT 57.009 32.000 0.46 0.00 0.00 2.57
6037 6599 9.506018 AATATGTCCAATATCATTGACGATTCA 57.494 29.630 0.46 0.00 0.00 2.57
6038 6600 9.764870 CAATATGTCCAATATCATTGACGATTC 57.235 33.333 0.46 0.00 0.00 2.52
6039 6601 9.288576 ACAATATGTCCAATATCATTGACGATT 57.711 29.630 0.46 0.00 0.00 3.34
6081 6643 3.239449 TCTCCATAATATCACGGCCACT 58.761 45.455 2.24 0.00 0.00 4.00
6106 6708 4.122776 CCTCAAGTCATCTCCGGTTTATG 58.877 47.826 0.00 4.18 0.00 1.90
6109 6711 2.257207 TCCTCAAGTCATCTCCGGTTT 58.743 47.619 0.00 0.00 0.00 3.27
6119 6721 5.690865 ACACTAAAATGGTTCCTCAAGTCA 58.309 37.500 0.00 0.00 0.00 3.41
6194 6796 6.849085 TTTGTGCCTTATTTATGTGGTCAT 57.151 33.333 0.00 0.00 38.00 3.06
6324 6926 1.412710 TGACGGCTTGAGTGTTTCTCT 59.587 47.619 0.00 0.00 43.13 3.10
6413 9179 4.771577 TCAGTGCAATGGGAAATATGTTGT 59.228 37.500 15.06 0.00 0.00 3.32
6488 9255 2.230992 TGGATGGGTTTTTCATCAAGCG 59.769 45.455 6.43 0.00 41.89 4.68
6512 9279 5.374071 AGTTCCCAAGTCGTTTTATGAAGT 58.626 37.500 0.00 0.00 0.00 3.01
6520 9287 1.029681 GGCAAGTTCCCAAGTCGTTT 58.970 50.000 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.