Multiple sequence alignment - TraesCS2D01G469200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G469200 chr2D 100.000 5643 0 0 1 5643 574355797 574350155 0.000000e+00 10421.0
1 TraesCS2D01G469200 chr2D 89.286 56 6 0 5448 5503 302260523 302260578 2.820000e-08 71.3
2 TraesCS2D01G469200 chr2B 95.321 3740 116 32 1697 5411 690220460 690216755 0.000000e+00 5882.0
3 TraesCS2D01G469200 chr2B 84.758 971 75 40 852 1773 690221401 690220455 0.000000e+00 905.0
4 TraesCS2D01G469200 chr2B 87.052 502 10 18 365 833 690222193 690221714 3.010000e-142 516.0
5 TraesCS2D01G469200 chr2B 90.071 141 10 2 5507 5643 690216724 690216584 4.490000e-41 180.0
6 TraesCS2D01G469200 chr2B 94.565 92 5 0 272 363 690224799 690224708 5.890000e-30 143.0
7 TraesCS2D01G469200 chr2B 100.000 44 0 0 5460 5503 377044009 377043966 1.300000e-11 82.4
8 TraesCS2D01G469200 chr2B 97.917 48 0 1 5457 5503 782683852 782683899 1.300000e-11 82.4
9 TraesCS2D01G469200 chr2B 95.918 49 1 1 5456 5503 249224128 249224176 1.690000e-10 78.7
10 TraesCS2D01G469200 chr2B 92.453 53 2 2 5460 5511 334693991 334693940 2.180000e-09 75.0
11 TraesCS2D01G469200 chr2A 93.344 3711 147 49 1814 5462 712723990 712720318 0.000000e+00 5393.0
12 TraesCS2D01G469200 chr2A 88.429 942 46 33 688 1606 712725172 712724271 0.000000e+00 1077.0
13 TraesCS2D01G469200 chr2A 94.595 74 3 1 5571 5643 712720124 712720051 4.620000e-21 113.0
14 TraesCS2D01G469200 chr2A 92.647 68 2 1 5508 5572 712720315 712720248 1.670000e-15 95.3
15 TraesCS2D01G469200 chr2A 88.889 72 8 0 1698 1769 712724060 712723989 7.790000e-14 89.8
16 TraesCS2D01G469200 chr3D 83.544 237 31 6 1 233 300618320 300618088 1.230000e-51 215.0
17 TraesCS2D01G469200 chr4A 84.141 227 28 5 11 233 137522832 137522610 4.430000e-51 213.0
18 TraesCS2D01G469200 chr4A 83.333 234 31 5 1 230 619150543 619150772 5.730000e-50 209.0
19 TraesCS2D01G469200 chrUn 83.122 237 32 5 1 233 136394946 136394714 5.730000e-50 209.0
20 TraesCS2D01G469200 chr7B 83.333 234 31 5 1 230 648273900 648274129 5.730000e-50 209.0
21 TraesCS2D01G469200 chr7B 82.700 237 33 5 1 233 380072920 380072688 2.670000e-48 204.0
22 TraesCS2D01G469200 chr6B 83.700 227 29 5 11 233 662144852 662144630 2.060000e-49 207.0
23 TraesCS2D01G469200 chr5B 82.906 234 32 5 1 230 710236018 710236247 2.670000e-48 204.0
24 TraesCS2D01G469200 chr5B 94.340 53 1 2 5460 5511 670859924 670859975 4.690000e-11 80.5
25 TraesCS2D01G469200 chr1B 82.906 234 32 6 1 230 192141843 192142072 2.670000e-48 204.0
26 TraesCS2D01G469200 chr5D 94.340 53 2 1 5452 5503 556284219 556284167 4.690000e-11 80.5
27 TraesCS2D01G469200 chr1D 97.826 46 0 1 5459 5503 50709048 50709003 1.690000e-10 78.7
28 TraesCS2D01G469200 chr1D 97.826 46 0 1 5459 5503 484391016 484390971 1.690000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G469200 chr2D 574350155 574355797 5642 True 10421.00 10421 100.0000 1 5643 1 chr2D.!!$R1 5642
1 TraesCS2D01G469200 chr2B 690216584 690224799 8215 True 1525.20 5882 90.3534 272 5643 5 chr2B.!!$R3 5371
2 TraesCS2D01G469200 chr2A 712720051 712725172 5121 True 1353.62 5393 91.5808 688 5643 5 chr2A.!!$R1 4955

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 2980 0.036010 CGGATCAGTGGTGCTTCCTT 60.036 55.000 0.00 0.00 37.07 3.36 F
1584 4486 0.169009 CTAAAAAGGCCTGCGCTGTC 59.831 55.000 5.69 0.49 34.44 3.51 F
1642 4544 0.035534 TGCGAAGGCAGGCATAGAAA 60.036 50.000 0.00 0.00 46.21 2.52 F
1660 4588 0.170339 AACCGAAGCTAAAATGGCGC 59.830 50.000 0.00 0.00 34.52 6.53 F
1677 4605 0.302890 CGCTCATTCGCATCTCCAAC 59.697 55.000 0.00 0.00 0.00 3.77 F
2176 5205 0.400213 TTGTGGGAAGAGCACGGATT 59.600 50.000 0.00 0.00 0.00 3.01 F
2180 5209 0.462759 GGGAAGAGCACGGATTGGAG 60.463 60.000 0.00 0.00 0.00 3.86 F
2399 5431 2.091885 GGGACTATTCTTGCCCCATCAA 60.092 50.000 0.00 0.00 37.04 2.57 F
3978 7017 2.304180 AGTGCTACAAGAACAGCTCCAT 59.696 45.455 0.00 0.00 38.63 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 4545 0.028110 GAGCGCCATTTTAGCTTCGG 59.972 55.000 2.29 0.0 41.84 4.30 R
3182 6221 1.100510 GCATCTTGCTGCTCATCCAA 58.899 50.000 0.00 0.0 40.96 3.53 R
3250 6289 1.973812 GCTTTCCAGCTCACCCACC 60.974 63.158 0.00 0.0 43.51 4.61 R
3799 6838 1.629043 TCTCCGCTTGTTCCACTACT 58.371 50.000 0.00 0.0 0.00 2.57 R
3832 6871 3.556633 CCTGTGCTCTGACTGACTTGATT 60.557 47.826 0.00 0.0 0.00 2.57 R
3837 6876 1.549620 CATCCTGTGCTCTGACTGACT 59.450 52.381 0.00 0.0 0.00 3.41 R
3877 6916 1.649321 TGTCCTCTGATTCTGCTGGT 58.351 50.000 0.00 0.0 0.00 4.00 R
4126 7165 2.107378 TGAACCACTTGAACCCTGCATA 59.893 45.455 0.00 0.0 0.00 3.14 R
5116 8184 0.024619 GAACGACGCATACGCTTTCC 59.975 55.000 0.00 0.0 45.53 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.536570 TCCAACGACACTTGAAACATCA 58.463 40.909 0.00 0.00 0.00 3.07
22 23 4.133820 TCCAACGACACTTGAAACATCAT 58.866 39.130 0.00 0.00 0.00 2.45
23 24 4.213270 TCCAACGACACTTGAAACATCATC 59.787 41.667 0.00 0.00 0.00 2.92
24 25 4.143835 CAACGACACTTGAAACATCATCG 58.856 43.478 0.00 0.00 0.00 3.84
25 26 2.736721 ACGACACTTGAAACATCATCGG 59.263 45.455 0.00 0.00 32.78 4.18
26 27 2.094258 CGACACTTGAAACATCATCGGG 59.906 50.000 0.00 0.00 0.00 5.14
27 28 3.334691 GACACTTGAAACATCATCGGGA 58.665 45.455 0.00 0.00 0.00 5.14
28 29 3.074412 ACACTTGAAACATCATCGGGAC 58.926 45.455 0.00 0.00 0.00 4.46
47 48 4.097361 GGGCCAGACGGGAAGGAC 62.097 72.222 4.39 0.00 40.01 3.85
48 49 4.097361 GGCCAGACGGGAAGGACC 62.097 72.222 0.00 0.00 40.01 4.46
49 50 3.003763 GCCAGACGGGAAGGACCT 61.004 66.667 0.00 0.00 40.01 3.85
50 51 2.593956 GCCAGACGGGAAGGACCTT 61.594 63.158 6.40 6.40 40.01 3.50
51 52 1.262640 GCCAGACGGGAAGGACCTTA 61.263 60.000 6.75 0.00 40.01 2.69
52 53 1.497161 CCAGACGGGAAGGACCTTAT 58.503 55.000 6.75 0.00 40.01 1.73
53 54 1.838077 CCAGACGGGAAGGACCTTATT 59.162 52.381 6.75 0.00 40.01 1.40
54 55 2.158943 CCAGACGGGAAGGACCTTATTC 60.159 54.545 6.75 1.46 40.01 1.75
55 56 2.117051 AGACGGGAAGGACCTTATTCC 58.883 52.381 6.75 4.27 43.60 3.01
56 57 1.835531 GACGGGAAGGACCTTATTCCA 59.164 52.381 6.75 0.00 45.70 3.53
57 58 2.438392 GACGGGAAGGACCTTATTCCAT 59.562 50.000 6.75 0.00 45.70 3.41
58 59 3.644738 GACGGGAAGGACCTTATTCCATA 59.355 47.826 6.75 0.00 45.70 2.74
59 60 4.240323 ACGGGAAGGACCTTATTCCATAT 58.760 43.478 6.75 0.00 45.70 1.78
60 61 4.041691 ACGGGAAGGACCTTATTCCATATG 59.958 45.833 6.75 0.00 45.70 1.78
61 62 4.041691 CGGGAAGGACCTTATTCCATATGT 59.958 45.833 6.75 0.00 45.70 2.29
62 63 5.247564 CGGGAAGGACCTTATTCCATATGTA 59.752 44.000 6.75 0.00 45.70 2.29
63 64 6.239772 CGGGAAGGACCTTATTCCATATGTAA 60.240 42.308 6.75 0.00 45.70 2.41
64 65 7.168905 GGGAAGGACCTTATTCCATATGTAAG 58.831 42.308 6.75 3.60 45.70 2.34
65 66 7.017254 GGGAAGGACCTTATTCCATATGTAAGA 59.983 40.741 6.75 0.00 45.70 2.10
66 67 8.437575 GGAAGGACCTTATTCCATATGTAAGAA 58.562 37.037 6.75 4.73 43.75 2.52
67 68 9.495572 GAAGGACCTTATTCCATATGTAAGAAG 57.504 37.037 6.75 8.09 38.25 2.85
68 69 8.798975 AGGACCTTATTCCATATGTAAGAAGA 57.201 34.615 14.82 1.15 38.25 2.87
69 70 8.652290 AGGACCTTATTCCATATGTAAGAAGAC 58.348 37.037 14.82 9.30 38.25 3.01
70 71 7.599245 GGACCTTATTCCATATGTAAGAAGACG 59.401 40.741 14.82 4.27 35.49 4.18
71 72 6.929606 ACCTTATTCCATATGTAAGAAGACGC 59.070 38.462 14.82 0.00 0.00 5.19
72 73 6.369065 CCTTATTCCATATGTAAGAAGACGCC 59.631 42.308 14.82 0.00 0.00 5.68
73 74 3.364889 TCCATATGTAAGAAGACGCCG 57.635 47.619 1.24 0.00 0.00 6.46
74 75 1.792949 CCATATGTAAGAAGACGCCGC 59.207 52.381 1.24 0.00 0.00 6.53
75 76 1.792949 CATATGTAAGAAGACGCCGCC 59.207 52.381 0.00 0.00 0.00 6.13
76 77 0.248743 TATGTAAGAAGACGCCGCCG 60.249 55.000 0.00 0.00 41.14 6.46
77 78 3.551915 GTAAGAAGACGCCGCCGC 61.552 66.667 0.00 0.00 38.22 6.53
78 79 4.807039 TAAGAAGACGCCGCCGCC 62.807 66.667 0.00 0.00 38.22 6.13
88 89 4.436998 CCGCCGCCTCGTCTTCTT 62.437 66.667 0.00 0.00 0.00 2.52
89 90 3.181967 CGCCGCCTCGTCTTCTTG 61.182 66.667 0.00 0.00 0.00 3.02
90 91 2.261671 GCCGCCTCGTCTTCTTGA 59.738 61.111 0.00 0.00 0.00 3.02
91 92 1.807573 GCCGCCTCGTCTTCTTGAG 60.808 63.158 0.00 0.00 0.00 3.02
92 93 1.807573 CCGCCTCGTCTTCTTGAGC 60.808 63.158 0.00 0.00 0.00 4.26
93 94 1.080501 CGCCTCGTCTTCTTGAGCA 60.081 57.895 0.00 0.00 0.00 4.26
94 95 0.459237 CGCCTCGTCTTCTTGAGCAT 60.459 55.000 0.00 0.00 0.00 3.79
95 96 1.202302 CGCCTCGTCTTCTTGAGCATA 60.202 52.381 0.00 0.00 0.00 3.14
96 97 2.544694 CGCCTCGTCTTCTTGAGCATAT 60.545 50.000 0.00 0.00 0.00 1.78
97 98 3.056304 GCCTCGTCTTCTTGAGCATATC 58.944 50.000 0.00 0.00 0.00 1.63
98 99 3.491619 GCCTCGTCTTCTTGAGCATATCA 60.492 47.826 0.00 0.00 35.62 2.15
99 100 4.047822 CCTCGTCTTCTTGAGCATATCAC 58.952 47.826 0.00 0.00 37.77 3.06
100 101 4.440663 CCTCGTCTTCTTGAGCATATCACA 60.441 45.833 0.00 0.00 37.77 3.58
101 102 5.072040 TCGTCTTCTTGAGCATATCACAA 57.928 39.130 0.00 0.00 37.77 3.33
102 103 5.478407 TCGTCTTCTTGAGCATATCACAAA 58.522 37.500 0.00 0.00 37.77 2.83
103 104 5.348724 TCGTCTTCTTGAGCATATCACAAAC 59.651 40.000 0.00 0.00 37.77 2.93
104 105 5.446473 CGTCTTCTTGAGCATATCACAAACC 60.446 44.000 0.00 0.00 37.77 3.27
105 106 5.645497 GTCTTCTTGAGCATATCACAAACCT 59.355 40.000 0.00 0.00 37.77 3.50
106 107 6.818644 GTCTTCTTGAGCATATCACAAACCTA 59.181 38.462 0.00 0.00 37.77 3.08
107 108 7.334421 GTCTTCTTGAGCATATCACAAACCTAA 59.666 37.037 0.00 0.00 37.77 2.69
108 109 6.985188 TCTTGAGCATATCACAAACCTAAC 57.015 37.500 0.00 0.00 37.77 2.34
109 110 6.472016 TCTTGAGCATATCACAAACCTAACA 58.528 36.000 0.00 0.00 37.77 2.41
110 111 6.939730 TCTTGAGCATATCACAAACCTAACAA 59.060 34.615 0.00 0.00 37.77 2.83
111 112 6.741992 TGAGCATATCACAAACCTAACAAG 57.258 37.500 0.00 0.00 31.12 3.16
112 113 6.472016 TGAGCATATCACAAACCTAACAAGA 58.528 36.000 0.00 0.00 31.12 3.02
113 114 7.112122 TGAGCATATCACAAACCTAACAAGAT 58.888 34.615 0.00 0.00 31.12 2.40
114 115 7.611467 TGAGCATATCACAAACCTAACAAGATT 59.389 33.333 0.00 0.00 31.12 2.40
115 116 7.989826 AGCATATCACAAACCTAACAAGATTC 58.010 34.615 0.00 0.00 0.00 2.52
116 117 7.611467 AGCATATCACAAACCTAACAAGATTCA 59.389 33.333 0.00 0.00 0.00 2.57
117 118 7.912250 GCATATCACAAACCTAACAAGATTCAG 59.088 37.037 0.00 0.00 0.00 3.02
118 119 9.166173 CATATCACAAACCTAACAAGATTCAGA 57.834 33.333 0.00 0.00 0.00 3.27
119 120 9.739276 ATATCACAAACCTAACAAGATTCAGAA 57.261 29.630 0.00 0.00 0.00 3.02
120 121 7.873719 TCACAAACCTAACAAGATTCAGAAA 57.126 32.000 0.00 0.00 0.00 2.52
121 122 8.287439 TCACAAACCTAACAAGATTCAGAAAA 57.713 30.769 0.00 0.00 0.00 2.29
122 123 8.912988 TCACAAACCTAACAAGATTCAGAAAAT 58.087 29.630 0.00 0.00 0.00 1.82
127 128 9.588096 AACCTAACAAGATTCAGAAAATAACCT 57.412 29.630 0.00 0.00 0.00 3.50
139 140 9.705290 TTCAGAAAATAACCTAAAAATGAAGCC 57.295 29.630 0.00 0.00 0.00 4.35
140 141 8.311109 TCAGAAAATAACCTAAAAATGAAGCCC 58.689 33.333 0.00 0.00 0.00 5.19
141 142 7.549134 CAGAAAATAACCTAAAAATGAAGCCCC 59.451 37.037 0.00 0.00 0.00 5.80
142 143 5.950544 AATAACCTAAAAATGAAGCCCCC 57.049 39.130 0.00 0.00 0.00 5.40
143 144 1.847328 ACCTAAAAATGAAGCCCCCG 58.153 50.000 0.00 0.00 0.00 5.73
144 145 0.459899 CCTAAAAATGAAGCCCCCGC 59.540 55.000 0.00 0.00 0.00 6.13
145 146 0.459899 CTAAAAATGAAGCCCCCGCC 59.540 55.000 0.00 0.00 34.57 6.13
146 147 1.316706 TAAAAATGAAGCCCCCGCCG 61.317 55.000 0.00 0.00 34.57 6.46
147 148 3.577334 AAAATGAAGCCCCCGCCGA 62.577 57.895 0.00 0.00 34.57 5.54
148 149 4.796495 AATGAAGCCCCCGCCGAC 62.796 66.667 0.00 0.00 34.57 4.79
161 162 4.109675 CCGACAAAGGGCCGGGAT 62.110 66.667 2.18 0.00 39.59 3.85
162 163 2.513897 CGACAAAGGGCCGGGATC 60.514 66.667 2.18 0.00 0.00 3.36
163 164 2.124278 GACAAAGGGCCGGGATCC 60.124 66.667 1.92 1.92 0.00 3.36
164 165 2.938798 ACAAAGGGCCGGGATCCA 60.939 61.111 15.23 0.00 0.00 3.41
165 166 2.440247 CAAAGGGCCGGGATCCAC 60.440 66.667 15.23 1.75 0.00 4.02
166 167 3.739613 AAAGGGCCGGGATCCACC 61.740 66.667 15.23 11.54 38.08 4.61
174 175 4.176752 GGGATCCACCGTGCCTCC 62.177 72.222 15.23 8.43 40.11 4.30
175 176 3.399181 GGATCCACCGTGCCTCCA 61.399 66.667 6.95 0.00 0.00 3.86
176 177 2.746375 GGATCCACCGTGCCTCCAT 61.746 63.158 6.95 0.00 0.00 3.41
177 178 1.524621 GATCCACCGTGCCTCCATG 60.525 63.158 0.00 0.00 0.00 3.66
178 179 1.971505 GATCCACCGTGCCTCCATGA 61.972 60.000 0.00 0.00 0.00 3.07
179 180 1.348008 ATCCACCGTGCCTCCATGAT 61.348 55.000 0.00 0.00 0.00 2.45
180 181 0.689412 TCCACCGTGCCTCCATGATA 60.689 55.000 0.00 0.00 0.00 2.15
181 182 0.532862 CCACCGTGCCTCCATGATAC 60.533 60.000 0.00 0.00 0.00 2.24
182 183 0.177836 CACCGTGCCTCCATGATACA 59.822 55.000 0.00 0.00 0.00 2.29
183 184 0.908910 ACCGTGCCTCCATGATACAA 59.091 50.000 0.00 0.00 0.00 2.41
184 185 1.134401 ACCGTGCCTCCATGATACAAG 60.134 52.381 0.00 0.00 0.00 3.16
185 186 1.586422 CGTGCCTCCATGATACAAGG 58.414 55.000 0.00 0.00 0.00 3.61
186 187 1.138859 CGTGCCTCCATGATACAAGGA 59.861 52.381 0.00 0.00 30.28 3.36
187 188 2.224378 CGTGCCTCCATGATACAAGGAT 60.224 50.000 0.00 0.00 30.66 3.24
188 189 3.406764 GTGCCTCCATGATACAAGGATC 58.593 50.000 0.00 0.00 30.66 3.36
189 190 3.047857 TGCCTCCATGATACAAGGATCA 58.952 45.455 0.00 0.00 40.08 2.92
190 191 3.654321 TGCCTCCATGATACAAGGATCAT 59.346 43.478 1.87 1.87 45.51 2.45
191 192 4.845796 TGCCTCCATGATACAAGGATCATA 59.154 41.667 7.43 0.00 43.29 2.15
192 193 5.046087 TGCCTCCATGATACAAGGATCATAG 60.046 44.000 7.43 1.20 43.29 2.23
193 194 5.628666 GCCTCCATGATACAAGGATCATAGG 60.629 48.000 15.43 15.43 43.29 2.57
194 195 5.723405 CCTCCATGATACAAGGATCATAGGA 59.277 44.000 14.92 16.49 43.29 2.94
195 196 6.127111 CCTCCATGATACAAGGATCATAGGAG 60.127 46.154 26.62 26.62 46.14 3.69
196 197 6.565036 TCCATGATACAAGGATCATAGGAGA 58.435 40.000 16.10 7.10 43.29 3.71
197 198 6.438741 TCCATGATACAAGGATCATAGGAGAC 59.561 42.308 16.10 0.00 43.29 3.36
198 199 5.966742 TGATACAAGGATCATAGGAGACG 57.033 43.478 0.00 0.00 30.75 4.18
199 200 5.631119 TGATACAAGGATCATAGGAGACGA 58.369 41.667 0.00 0.00 30.75 4.20
200 201 5.707764 TGATACAAGGATCATAGGAGACGAG 59.292 44.000 0.00 0.00 30.75 4.18
201 202 3.226777 ACAAGGATCATAGGAGACGAGG 58.773 50.000 0.00 0.00 0.00 4.63
202 203 3.226777 CAAGGATCATAGGAGACGAGGT 58.773 50.000 0.00 0.00 0.00 3.85
203 204 2.870175 AGGATCATAGGAGACGAGGTG 58.130 52.381 0.00 0.00 0.00 4.00
204 205 2.443632 AGGATCATAGGAGACGAGGTGA 59.556 50.000 0.00 0.00 0.00 4.02
205 206 3.117474 AGGATCATAGGAGACGAGGTGAA 60.117 47.826 0.00 0.00 0.00 3.18
206 207 3.004944 GGATCATAGGAGACGAGGTGAAC 59.995 52.174 0.00 0.00 0.00 3.18
207 208 2.376109 TCATAGGAGACGAGGTGAACC 58.624 52.381 0.00 0.00 0.00 3.62
208 209 2.100197 CATAGGAGACGAGGTGAACCA 58.900 52.381 1.62 0.00 38.89 3.67
209 210 1.835494 TAGGAGACGAGGTGAACCAG 58.165 55.000 1.62 0.00 38.89 4.00
210 211 0.900647 AGGAGACGAGGTGAACCAGG 60.901 60.000 1.62 0.00 38.89 4.45
211 212 1.592223 GAGACGAGGTGAACCAGGG 59.408 63.158 1.62 0.00 38.89 4.45
212 213 1.889530 GAGACGAGGTGAACCAGGGG 61.890 65.000 1.62 0.00 38.89 4.79
213 214 3.607370 GACGAGGTGAACCAGGGGC 62.607 68.421 1.62 0.00 38.89 5.80
214 215 4.760047 CGAGGTGAACCAGGGGCG 62.760 72.222 1.62 0.00 38.89 6.13
215 216 4.410400 GAGGTGAACCAGGGGCGG 62.410 72.222 1.62 0.00 38.89 6.13
238 239 3.591835 GCGAGAGGCGAGAGGGAG 61.592 72.222 0.00 0.00 44.57 4.30
239 240 2.904866 CGAGAGGCGAGAGGGAGG 60.905 72.222 0.00 0.00 44.57 4.30
240 241 2.520741 GAGAGGCGAGAGGGAGGG 60.521 72.222 0.00 0.00 0.00 4.30
241 242 3.024356 AGAGGCGAGAGGGAGGGA 61.024 66.667 0.00 0.00 0.00 4.20
242 243 2.042843 GAGGCGAGAGGGAGGGAA 60.043 66.667 0.00 0.00 0.00 3.97
243 244 1.458588 GAGGCGAGAGGGAGGGAAT 60.459 63.158 0.00 0.00 0.00 3.01
244 245 1.003573 AGGCGAGAGGGAGGGAATT 59.996 57.895 0.00 0.00 0.00 2.17
245 246 1.051556 AGGCGAGAGGGAGGGAATTC 61.052 60.000 0.00 0.00 0.00 2.17
246 247 1.448069 GCGAGAGGGAGGGAATTCC 59.552 63.158 16.74 16.74 36.46 3.01
259 260 5.816955 AGGGAATTCCTAGATGAGTTAGC 57.183 43.478 23.63 2.61 45.98 3.09
260 261 5.219739 AGGGAATTCCTAGATGAGTTAGCA 58.780 41.667 23.63 0.00 45.98 3.49
261 262 5.306678 AGGGAATTCCTAGATGAGTTAGCAG 59.693 44.000 23.63 0.00 45.98 4.24
262 263 5.512232 GGGAATTCCTAGATGAGTTAGCAGG 60.512 48.000 23.63 0.00 35.95 4.85
263 264 5.305644 GGAATTCCTAGATGAGTTAGCAGGA 59.694 44.000 17.73 0.00 0.00 3.86
264 265 6.418057 AATTCCTAGATGAGTTAGCAGGAG 57.582 41.667 0.00 0.00 33.88 3.69
265 266 3.838565 TCCTAGATGAGTTAGCAGGAGG 58.161 50.000 0.00 0.00 0.00 4.30
266 267 2.896685 CCTAGATGAGTTAGCAGGAGGG 59.103 54.545 0.00 0.00 0.00 4.30
267 268 1.127343 AGATGAGTTAGCAGGAGGGC 58.873 55.000 0.00 0.00 0.00 5.19
268 269 0.833287 GATGAGTTAGCAGGAGGGCA 59.167 55.000 0.00 0.00 35.83 5.36
269 270 0.543749 ATGAGTTAGCAGGAGGGCAC 59.456 55.000 0.00 0.00 35.83 5.01
270 271 0.835971 TGAGTTAGCAGGAGGGCACA 60.836 55.000 0.00 0.00 35.83 4.57
271 272 0.324943 GAGTTAGCAGGAGGGCACAA 59.675 55.000 0.00 0.00 35.83 3.33
272 273 0.326264 AGTTAGCAGGAGGGCACAAG 59.674 55.000 0.00 0.00 35.83 3.16
273 274 0.678048 GTTAGCAGGAGGGCACAAGG 60.678 60.000 0.00 0.00 35.83 3.61
274 275 0.840288 TTAGCAGGAGGGCACAAGGA 60.840 55.000 0.00 0.00 35.83 3.36
275 276 1.553690 TAGCAGGAGGGCACAAGGAC 61.554 60.000 0.00 0.00 35.83 3.85
276 277 2.900106 GCAGGAGGGCACAAGGACT 61.900 63.158 0.00 0.00 0.00 3.85
277 278 1.553690 GCAGGAGGGCACAAGGACTA 61.554 60.000 0.00 0.00 0.00 2.59
278 279 0.539051 CAGGAGGGCACAAGGACTAG 59.461 60.000 0.00 0.00 0.00 2.57
279 280 0.117340 AGGAGGGCACAAGGACTAGT 59.883 55.000 0.00 0.00 0.00 2.57
288 289 1.070758 ACAAGGACTAGTGCACCACTG 59.929 52.381 17.34 8.10 45.01 3.66
291 292 0.037232 GGACTAGTGCACCACTGGAC 60.037 60.000 14.63 8.73 44.01 4.02
350 351 6.687105 GTGTTCATGTAGAAAATAATGACGCC 59.313 38.462 0.00 0.00 38.13 5.68
363 364 2.074547 TGACGCCTGTAGCTTGTTAC 57.925 50.000 0.00 0.00 40.39 2.50
434 2951 2.373540 TGTACCATGTACGAACTGGC 57.626 50.000 0.00 0.00 33.12 4.85
461 2978 0.179000 ATCGGATCAGTGGTGCTTCC 59.821 55.000 0.00 0.00 0.00 3.46
462 2979 0.904865 TCGGATCAGTGGTGCTTCCT 60.905 55.000 0.00 0.00 37.07 3.36
463 2980 0.036010 CGGATCAGTGGTGCTTCCTT 60.036 55.000 0.00 0.00 37.07 3.36
464 2981 1.743996 GGATCAGTGGTGCTTCCTTC 58.256 55.000 0.00 0.00 37.07 3.46
482 2999 1.671054 CACACATCCCCACGACACC 60.671 63.158 0.00 0.00 0.00 4.16
505 3022 1.777272 GGGCCCCTTCAGATGATAAGT 59.223 52.381 12.23 0.00 0.00 2.24
514 3031 6.127758 CCCTTCAGATGATAAGTCTATCTCGG 60.128 46.154 0.00 0.00 35.79 4.63
520 3037 4.580868 TGATAAGTCTATCTCGGCGATCT 58.419 43.478 11.27 2.96 35.79 2.75
529 3046 3.918220 CGGCGATCTTCGTGCAGC 61.918 66.667 0.00 0.00 42.81 5.25
569 3105 2.811317 CGCAAGTCACGGCTCCTC 60.811 66.667 0.00 0.00 0.00 3.71
632 3168 3.984749 CCAACAAAACCCGGCCCG 61.985 66.667 0.00 0.00 0.00 6.13
729 3285 4.029809 CCGTCCTTCCACCCCACC 62.030 72.222 0.00 0.00 0.00 4.61
730 3286 4.029809 CGTCCTTCCACCCCACCC 62.030 72.222 0.00 0.00 0.00 4.61
731 3287 3.658422 GTCCTTCCACCCCACCCC 61.658 72.222 0.00 0.00 0.00 4.95
732 3288 4.209620 TCCTTCCACCCCACCCCA 62.210 66.667 0.00 0.00 0.00 4.96
733 3289 3.979497 CCTTCCACCCCACCCCAC 61.979 72.222 0.00 0.00 0.00 4.61
734 3290 3.979497 CTTCCACCCCACCCCACC 61.979 72.222 0.00 0.00 0.00 4.61
828 3386 0.179001 CACCTCCCTTTTCCCAACGT 60.179 55.000 0.00 0.00 0.00 3.99
838 3396 3.400054 CCCAACGTCTCCTCCCCC 61.400 72.222 0.00 0.00 0.00 5.40
839 3397 2.606519 CCAACGTCTCCTCCCCCA 60.607 66.667 0.00 0.00 0.00 4.96
840 3398 2.660064 CCAACGTCTCCTCCCCCAG 61.660 68.421 0.00 0.00 0.00 4.45
841 3399 1.609501 CAACGTCTCCTCCCCCAGA 60.610 63.158 0.00 0.00 0.00 3.86
845 3403 1.990614 GTCTCCTCCCCCAGACCAC 60.991 68.421 0.00 0.00 34.09 4.16
927 3783 2.266055 CGCCTCCTCCACTGTTCC 59.734 66.667 0.00 0.00 0.00 3.62
930 3786 1.679898 CCTCCTCCACTGTTCCACC 59.320 63.158 0.00 0.00 0.00 4.61
1416 4316 3.102052 TCGTTTCGTTTCCTGCTAGTT 57.898 42.857 0.00 0.00 0.00 2.24
1419 4319 3.135994 GTTTCGTTTCCTGCTAGTTGGA 58.864 45.455 2.38 2.38 0.00 3.53
1420 4320 2.743636 TCGTTTCCTGCTAGTTGGAG 57.256 50.000 6.09 0.00 33.46 3.86
1421 4321 1.968493 TCGTTTCCTGCTAGTTGGAGT 59.032 47.619 6.09 0.00 33.46 3.85
1422 4322 3.159472 TCGTTTCCTGCTAGTTGGAGTA 58.841 45.455 6.09 0.00 33.46 2.59
1423 4323 3.575256 TCGTTTCCTGCTAGTTGGAGTAA 59.425 43.478 6.09 0.00 33.46 2.24
1424 4324 4.039488 TCGTTTCCTGCTAGTTGGAGTAAA 59.961 41.667 6.09 0.00 33.46 2.01
1425 4325 4.935808 CGTTTCCTGCTAGTTGGAGTAAAT 59.064 41.667 6.09 0.00 33.46 1.40
1433 4333 5.186198 GCTAGTTGGAGTAAATGGTGATGT 58.814 41.667 0.00 0.00 0.00 3.06
1448 4348 1.817447 TGATGTGCGCATTCATTGGAA 59.183 42.857 15.91 0.00 35.07 3.53
1453 4353 0.452987 GCGCATTCATTGGAAGCTCA 59.547 50.000 0.30 0.00 36.25 4.26
1454 4354 1.796617 GCGCATTCATTGGAAGCTCAC 60.797 52.381 0.30 0.00 36.25 3.51
1538 4438 4.826600 GCTAACTGCTGCGTGTTG 57.173 55.556 17.13 10.32 38.95 3.33
1539 4439 1.441016 GCTAACTGCTGCGTGTTGC 60.441 57.895 17.13 14.55 46.70 4.17
1584 4486 0.169009 CTAAAAAGGCCTGCGCTGTC 59.831 55.000 5.69 0.49 34.44 3.51
1602 4504 5.406780 CGCTGTCTCTTAGATTTTGTTCTGT 59.593 40.000 0.00 0.00 0.00 3.41
1628 4530 3.585748 GCTTCATATAAAGCGTGCGAA 57.414 42.857 0.00 0.00 41.98 4.70
1629 4531 3.535860 GCTTCATATAAAGCGTGCGAAG 58.464 45.455 0.00 0.00 41.98 3.79
1631 4533 1.864711 TCATATAAAGCGTGCGAAGGC 59.135 47.619 0.00 0.00 40.52 4.35
1642 4544 0.035534 TGCGAAGGCAGGCATAGAAA 60.036 50.000 0.00 0.00 46.21 2.52
1643 4545 0.378610 GCGAAGGCAGGCATAGAAAC 59.621 55.000 0.00 0.00 39.62 2.78
1644 4546 1.017387 CGAAGGCAGGCATAGAAACC 58.983 55.000 0.00 0.00 0.00 3.27
1645 4547 1.017387 GAAGGCAGGCATAGAAACCG 58.983 55.000 0.00 0.00 0.00 4.44
1647 4549 0.618458 AGGCAGGCATAGAAACCGAA 59.382 50.000 0.00 0.00 0.00 4.30
1648 4550 1.017387 GGCAGGCATAGAAACCGAAG 58.983 55.000 0.00 0.00 0.00 3.79
1653 4555 3.938963 CAGGCATAGAAACCGAAGCTAAA 59.061 43.478 0.00 0.00 0.00 1.85
1654 4556 4.394920 CAGGCATAGAAACCGAAGCTAAAA 59.605 41.667 0.00 0.00 0.00 1.52
1656 4558 5.066505 AGGCATAGAAACCGAAGCTAAAATG 59.933 40.000 0.00 0.00 0.00 2.32
1657 4559 5.273944 GCATAGAAACCGAAGCTAAAATGG 58.726 41.667 0.00 0.00 0.00 3.16
1658 4560 3.850122 AGAAACCGAAGCTAAAATGGC 57.150 42.857 0.00 0.00 0.00 4.40
1660 4588 0.170339 AACCGAAGCTAAAATGGCGC 59.830 50.000 0.00 0.00 34.52 6.53
1677 4605 0.302890 CGCTCATTCGCATCTCCAAC 59.697 55.000 0.00 0.00 0.00 3.77
1681 4609 0.734889 CATTCGCATCTCCAACCCAC 59.265 55.000 0.00 0.00 0.00 4.61
1690 4618 2.461695 TCTCCAACCCACAGATCTCTC 58.538 52.381 0.00 0.00 0.00 3.20
1694 4622 1.134580 CAACCCACAGATCTCTCGCAT 60.135 52.381 0.00 0.00 0.00 4.73
1700 4628 3.739810 CCACAGATCTCTCGCATACATTG 59.260 47.826 0.00 0.00 0.00 2.82
1733 4759 1.464997 GTGCGATTTCTCCACTGAACC 59.535 52.381 0.00 0.00 0.00 3.62
1734 4760 0.721718 GCGATTTCTCCACTGAACCG 59.278 55.000 0.00 0.00 0.00 4.44
1766 4792 5.545658 TTGTTCCTCTATTTTTAGCTGCG 57.454 39.130 0.00 0.00 0.00 5.18
1768 4794 5.726397 TGTTCCTCTATTTTTAGCTGCGTA 58.274 37.500 0.00 0.00 0.00 4.42
1773 4799 8.951787 TCCTCTATTTTTAGCTGCGTATTTTA 57.048 30.769 0.00 0.00 0.00 1.52
1805 4831 5.805728 AGTCAAATCTACGAACCCATTTCT 58.194 37.500 0.00 0.00 31.20 2.52
1809 4835 6.884295 TCAAATCTACGAACCCATTTCTCATT 59.116 34.615 0.00 0.00 31.20 2.57
2067 5096 3.724478 CCCAGGCATACATAGGATCCTA 58.276 50.000 23.76 23.76 0.00 2.94
2075 5104 3.282135 ACATAGGATCCTACCCATGCT 57.718 47.619 24.01 3.15 0.00 3.79
2176 5205 0.400213 TTGTGGGAAGAGCACGGATT 59.600 50.000 0.00 0.00 0.00 3.01
2180 5209 0.462759 GGGAAGAGCACGGATTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
2236 5265 2.565841 GATAGCTGCGGTCCAAATCTT 58.434 47.619 0.00 0.00 0.00 2.40
2263 5292 2.171870 GTTTAGGCAGTATAGGCACCCA 59.828 50.000 0.00 0.00 36.37 4.51
2399 5431 2.091885 GGGACTATTCTTGCCCCATCAA 60.092 50.000 0.00 0.00 37.04 2.57
2403 5435 5.376625 GACTATTCTTGCCCCATCAACATA 58.623 41.667 0.00 0.00 0.00 2.29
2443 5478 7.920151 TGAATCTTGGGTAAAATGCGATAAATG 59.080 33.333 0.00 0.00 0.00 2.32
2476 5511 6.492429 CACTGTATATGTAGCCTGGTAGGTTA 59.508 42.308 0.00 0.00 37.80 2.85
2566 5602 4.230455 CCCCCTTCAGATTCTCTATGTCT 58.770 47.826 0.00 0.00 0.00 3.41
2738 5777 7.254137 GGGAGACTTTTCTGATTTGCTTAATC 58.746 38.462 5.50 5.50 42.52 1.75
2879 5918 5.297029 ACAAGTCCAGCTTCTTAAACAAGAC 59.703 40.000 0.00 0.00 34.69 3.01
2882 5921 4.023963 GTCCAGCTTCTTAAACAAGACACC 60.024 45.833 0.00 0.00 0.00 4.16
2894 5933 3.077484 CAAGACACCTTGGGTCATCAT 57.923 47.619 0.00 0.00 44.58 2.45
2968 6007 3.117491 TGAAGAGCTTCACAAGGTGAG 57.883 47.619 8.76 0.00 43.69 3.51
3145 6184 6.247676 TGAGAACATGAAAGGAATGGAATCA 58.752 36.000 0.00 0.00 0.00 2.57
3175 6214 2.634815 ATCTGATAGCCAGCCAACTG 57.365 50.000 0.00 0.00 42.62 3.16
3226 6265 5.027460 TCCTATGTTGCTAACCTCCAGTTA 58.973 41.667 0.00 0.00 40.05 2.24
3250 6289 3.853330 CGGCAAGCACGTGATCGG 61.853 66.667 22.23 10.55 41.85 4.18
3799 6838 3.372440 TCTGCTAGAGGAGACATCACA 57.628 47.619 0.00 0.00 37.60 3.58
3832 6871 4.071961 AGCGGAGAACATTATACATGCA 57.928 40.909 0.00 0.00 0.00 3.96
3837 6876 6.513230 GCGGAGAACATTATACATGCAATCAA 60.513 38.462 0.00 0.00 0.00 2.57
3877 6916 4.299586 TGTTGAATTCAGGTATGAGCCA 57.700 40.909 8.41 0.00 36.61 4.75
3892 6931 2.777969 GCCACCAGCAGAATCAGAG 58.222 57.895 0.00 0.00 42.97 3.35
3901 6940 4.996122 CCAGCAGAATCAGAGGACATATTC 59.004 45.833 0.00 0.00 0.00 1.75
3928 6967 2.734673 CGAAGAGCTGCGTCCAAGC 61.735 63.158 0.00 0.00 37.71 4.01
3949 6988 3.190874 CGAAGAGCCTGTCATTAAGGAC 58.809 50.000 13.22 13.22 36.91 3.85
3978 7017 2.304180 AGTGCTACAAGAACAGCTCCAT 59.696 45.455 0.00 0.00 38.63 3.41
4126 7165 4.166725 TGGGAGACAATAAGCCATGAAGAT 59.833 41.667 0.00 0.00 0.00 2.40
4272 7311 2.369257 CTGGCCGACGCATACCTGAT 62.369 60.000 0.00 0.00 36.38 2.90
4447 7486 2.507324 GAGAGCGGCGTTCAGGAC 60.507 66.667 25.20 9.94 0.00 3.85
4648 7687 5.336150 TCAAGCAGAAGATCTAGGTGAAG 57.664 43.478 0.00 0.00 0.00 3.02
4649 7688 5.019470 TCAAGCAGAAGATCTAGGTGAAGA 58.981 41.667 0.00 0.00 0.00 2.87
4658 7717 1.902508 TCTAGGTGAAGAGGTGCAAGG 59.097 52.381 0.00 0.00 0.00 3.61
4696 7755 1.659098 AGAAATTACTTCGCCGCTTCG 59.341 47.619 0.00 0.00 39.22 3.79
4697 7756 1.657094 GAAATTACTTCGCCGCTTCGA 59.343 47.619 0.00 0.00 36.60 3.71
4698 7757 1.935933 AATTACTTCGCCGCTTCGAT 58.064 45.000 0.00 0.00 38.37 3.59
4699 7758 1.935933 ATTACTTCGCCGCTTCGATT 58.064 45.000 0.00 0.00 38.37 3.34
4767 7827 9.715121 ATTGATGTACTAGTAAAGAACCGAAAA 57.285 29.630 3.61 0.00 0.00 2.29
4769 7829 9.715121 TGATGTACTAGTAAAGAACCGAAAAAT 57.285 29.630 3.61 0.00 0.00 1.82
4779 7839 9.422196 GTAAAGAACCGAAAAATAGATCAATCG 57.578 33.333 0.00 0.00 0.00 3.34
4780 7840 7.843490 AAGAACCGAAAAATAGATCAATCGA 57.157 32.000 0.00 0.00 32.38 3.59
4781 7841 7.470289 AGAACCGAAAAATAGATCAATCGAG 57.530 36.000 0.00 0.00 32.38 4.04
4821 7881 2.738643 GCCGTGCTGCTTCTGTATCTTA 60.739 50.000 0.00 0.00 0.00 2.10
4844 7904 1.140312 TGGCTCTGGGGATATGGTTC 58.860 55.000 0.00 0.00 0.00 3.62
4845 7905 1.345422 TGGCTCTGGGGATATGGTTCT 60.345 52.381 0.00 0.00 0.00 3.01
4846 7906 2.090210 TGGCTCTGGGGATATGGTTCTA 60.090 50.000 0.00 0.00 0.00 2.10
4847 7907 2.303311 GGCTCTGGGGATATGGTTCTAC 59.697 54.545 0.00 0.00 0.00 2.59
4848 7908 3.243724 GCTCTGGGGATATGGTTCTACT 58.756 50.000 0.00 0.00 0.00 2.57
4881 7941 2.111878 GGTGAGATCCGGGCATGG 59.888 66.667 0.00 0.00 0.00 3.66
4961 8026 5.399301 CGATGTTTTTAGGCTTTTCACTGTG 59.601 40.000 0.17 0.17 0.00 3.66
4962 8027 5.652994 TGTTTTTAGGCTTTTCACTGTGT 57.347 34.783 7.79 0.00 0.00 3.72
4963 8028 6.031751 TGTTTTTAGGCTTTTCACTGTGTT 57.968 33.333 7.79 0.00 0.00 3.32
4964 8029 6.096695 TGTTTTTAGGCTTTTCACTGTGTTC 58.903 36.000 7.79 0.00 0.00 3.18
4965 8030 6.071616 TGTTTTTAGGCTTTTCACTGTGTTCT 60.072 34.615 7.79 1.19 0.00 3.01
4966 8031 7.121463 TGTTTTTAGGCTTTTCACTGTGTTCTA 59.879 33.333 7.79 0.35 0.00 2.10
4967 8032 7.817418 TTTTAGGCTTTTCACTGTGTTCTAT 57.183 32.000 7.79 0.00 0.00 1.98
4968 8033 7.435068 TTTAGGCTTTTCACTGTGTTCTATC 57.565 36.000 7.79 0.00 0.00 2.08
4969 8034 3.997021 AGGCTTTTCACTGTGTTCTATCG 59.003 43.478 7.79 0.00 0.00 2.92
4970 8035 3.746492 GGCTTTTCACTGTGTTCTATCGT 59.254 43.478 7.79 0.00 0.00 3.73
4974 8039 6.531948 GCTTTTCACTGTGTTCTATCGTCTAT 59.468 38.462 7.79 0.00 0.00 1.98
5009 8074 0.033228 ATATGCTGCTCTGACTCGGC 59.967 55.000 0.00 0.45 35.26 5.54
5105 8173 4.256920 CTGTGACCAAGGAACCTATCTTG 58.743 47.826 0.00 0.00 39.83 3.02
5110 8178 2.648059 CAAGGAACCTATCTTGGCCTG 58.352 52.381 3.32 0.00 37.35 4.85
5111 8179 0.548510 AGGAACCTATCTTGGCCTGC 59.451 55.000 3.32 0.00 0.00 4.85
5112 8180 0.466372 GGAACCTATCTTGGCCTGCC 60.466 60.000 3.32 0.00 0.00 4.85
5113 8181 0.548510 GAACCTATCTTGGCCTGCCT 59.451 55.000 9.97 0.00 36.94 4.75
5114 8182 1.002857 AACCTATCTTGGCCTGCCTT 58.997 50.000 9.97 0.00 36.94 4.35
5115 8183 0.257039 ACCTATCTTGGCCTGCCTTG 59.743 55.000 9.97 2.38 36.94 3.61
5116 8184 0.466922 CCTATCTTGGCCTGCCTTGG 60.467 60.000 9.97 0.00 36.94 3.61
5118 8186 0.918799 TATCTTGGCCTGCCTTGGGA 60.919 55.000 9.97 3.02 36.94 4.37
5119 8187 1.803453 ATCTTGGCCTGCCTTGGGAA 61.803 55.000 9.97 0.00 36.94 3.97
5120 8188 1.533753 CTTGGCCTGCCTTGGGAAA 60.534 57.895 9.97 0.00 36.94 3.13
5121 8189 1.533753 TTGGCCTGCCTTGGGAAAG 60.534 57.895 9.97 0.00 36.94 2.62
5123 8191 3.752339 GCCTGCCTTGGGAAAGCG 61.752 66.667 0.00 0.00 0.00 4.68
5181 8249 1.522668 TCATTCTGAAAGTGGCACCG 58.477 50.000 15.27 0.00 33.76 4.94
5183 8251 0.537143 ATTCTGAAAGTGGCACCGCA 60.537 50.000 15.27 9.16 33.76 5.69
5184 8252 1.444119 TTCTGAAAGTGGCACCGCAC 61.444 55.000 15.27 4.45 33.76 5.34
5185 8253 2.904866 TGAAAGTGGCACCGCACC 60.905 61.111 15.27 0.08 0.00 5.01
5186 8254 2.594592 GAAAGTGGCACCGCACCT 60.595 61.111 15.27 0.00 0.00 4.00
5187 8255 2.594592 AAAGTGGCACCGCACCTC 60.595 61.111 15.27 0.00 0.00 3.85
5188 8256 3.414136 AAAGTGGCACCGCACCTCA 62.414 57.895 15.27 0.00 0.00 3.86
5247 8315 3.465403 CTGGGGAGTGGAGAGCCG 61.465 72.222 0.00 0.00 36.79 5.52
5319 8388 5.393027 CCACATTACCAAGGATAACTGCAAC 60.393 44.000 0.00 0.00 0.00 4.17
5332 8401 2.024176 CTGCAACCAGCGGTTATAGT 57.976 50.000 11.71 0.00 45.01 2.12
5335 8404 2.486203 TGCAACCAGCGGTTATAGTTTG 59.514 45.455 11.71 1.94 45.01 2.93
5336 8405 2.486592 GCAACCAGCGGTTATAGTTTGT 59.513 45.455 11.71 0.00 45.01 2.83
5337 8406 3.425758 GCAACCAGCGGTTATAGTTTGTC 60.426 47.826 11.71 0.00 45.01 3.18
5349 8420 7.544566 CGGTTATAGTTTGTCTCACACATTAGT 59.455 37.037 0.00 0.00 33.90 2.24
5359 8444 4.158579 TCTCACACATTAGTAGCTGGACTG 59.841 45.833 0.00 0.00 0.00 3.51
5411 8496 2.033299 CAGTTGCCATTTTGTCTCACGT 59.967 45.455 0.00 0.00 0.00 4.49
5413 8498 0.865111 TGCCATTTTGTCTCACGTCG 59.135 50.000 0.00 0.00 0.00 5.12
5417 8502 3.314553 CCATTTTGTCTCACGTCGTAGT 58.685 45.455 0.00 0.00 0.00 2.73
5425 8510 3.369147 GTCTCACGTCGTAGTAGCAACTA 59.631 47.826 0.00 0.00 37.15 2.24
5462 8548 9.739276 TTGGATTTTATCTCACAAAGATGTACT 57.261 29.630 0.00 0.00 44.69 2.73
5463 8549 9.383519 TGGATTTTATCTCACAAAGATGTACTC 57.616 33.333 0.00 0.00 44.69 2.59
5464 8550 8.831550 GGATTTTATCTCACAAAGATGTACTCC 58.168 37.037 0.00 0.00 44.69 3.85
5465 8551 8.738645 ATTTTATCTCACAAAGATGTACTCCC 57.261 34.615 0.00 0.00 44.69 4.30
5466 8552 7.496346 TTTATCTCACAAAGATGTACTCCCT 57.504 36.000 0.00 0.00 44.69 4.20
5467 8553 5.606348 ATCTCACAAAGATGTACTCCCTC 57.394 43.478 0.00 0.00 43.35 4.30
5468 8554 4.678256 TCTCACAAAGATGTACTCCCTCT 58.322 43.478 0.00 0.00 37.82 3.69
5469 8555 4.464244 TCTCACAAAGATGTACTCCCTCTG 59.536 45.833 0.00 0.00 37.82 3.35
5470 8556 4.160329 TCACAAAGATGTACTCCCTCTGT 58.840 43.478 0.00 0.00 37.82 3.41
5471 8557 4.593206 TCACAAAGATGTACTCCCTCTGTT 59.407 41.667 0.00 0.00 37.82 3.16
5472 8558 4.932200 CACAAAGATGTACTCCCTCTGTTC 59.068 45.833 0.00 0.00 37.82 3.18
5473 8559 4.020128 ACAAAGATGTACTCCCTCTGTTCC 60.020 45.833 0.00 0.00 38.24 3.62
5474 8560 2.379972 AGATGTACTCCCTCTGTTCCG 58.620 52.381 0.00 0.00 0.00 4.30
5475 8561 2.025226 AGATGTACTCCCTCTGTTCCGA 60.025 50.000 0.00 0.00 0.00 4.55
5476 8562 2.526888 TGTACTCCCTCTGTTCCGAT 57.473 50.000 0.00 0.00 0.00 4.18
5477 8563 2.816411 TGTACTCCCTCTGTTCCGATT 58.184 47.619 0.00 0.00 0.00 3.34
5478 8564 3.170717 TGTACTCCCTCTGTTCCGATTT 58.829 45.455 0.00 0.00 0.00 2.17
5479 8565 4.346730 TGTACTCCCTCTGTTCCGATTTA 58.653 43.478 0.00 0.00 0.00 1.40
5480 8566 3.889520 ACTCCCTCTGTTCCGATTTAC 57.110 47.619 0.00 0.00 0.00 2.01
5481 8567 3.442076 ACTCCCTCTGTTCCGATTTACT 58.558 45.455 0.00 0.00 0.00 2.24
5482 8568 3.447944 ACTCCCTCTGTTCCGATTTACTC 59.552 47.826 0.00 0.00 0.00 2.59
5484 8570 2.165845 CCCTCTGTTCCGATTTACTCGT 59.834 50.000 0.00 0.00 46.18 4.18
5485 8571 3.436496 CCTCTGTTCCGATTTACTCGTC 58.564 50.000 0.00 0.00 46.18 4.20
5486 8572 3.099362 CTCTGTTCCGATTTACTCGTCG 58.901 50.000 0.00 0.00 46.18 5.12
5487 8573 2.485426 TCTGTTCCGATTTACTCGTCGT 59.515 45.455 0.00 0.00 46.18 4.34
5488 8574 2.587956 TGTTCCGATTTACTCGTCGTG 58.412 47.619 0.00 0.00 46.18 4.35
5489 8575 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
5490 8576 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
5491 8577 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
5492 8578 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
5493 8579 3.190327 TCCGATTTACTCGTCGTGGTTTA 59.810 43.478 0.00 0.00 46.18 2.01
5494 8580 3.545078 CCGATTTACTCGTCGTGGTTTAG 59.455 47.826 0.00 0.00 46.18 1.85
5495 8581 4.161333 CGATTTACTCGTCGTGGTTTAGT 58.839 43.478 0.00 0.00 42.56 2.24
5496 8582 4.618489 CGATTTACTCGTCGTGGTTTAGTT 59.382 41.667 0.00 0.00 42.56 2.24
5497 8583 5.219914 CGATTTACTCGTCGTGGTTTAGTTC 60.220 44.000 0.00 0.00 42.56 3.01
5498 8584 4.566545 TTACTCGTCGTGGTTTAGTTCA 57.433 40.909 0.00 0.00 0.00 3.18
5499 8585 3.441496 ACTCGTCGTGGTTTAGTTCAA 57.559 42.857 0.00 0.00 0.00 2.69
5500 8586 3.784338 ACTCGTCGTGGTTTAGTTCAAA 58.216 40.909 0.00 0.00 0.00 2.69
5501 8587 4.374399 ACTCGTCGTGGTTTAGTTCAAAT 58.626 39.130 0.00 0.00 0.00 2.32
5502 8588 4.812626 ACTCGTCGTGGTTTAGTTCAAATT 59.187 37.500 0.00 0.00 0.00 1.82
5503 8589 5.984926 ACTCGTCGTGGTTTAGTTCAAATTA 59.015 36.000 0.00 0.00 0.00 1.40
5504 8590 6.647895 ACTCGTCGTGGTTTAGTTCAAATTAT 59.352 34.615 0.00 0.00 0.00 1.28
5505 8591 7.814107 ACTCGTCGTGGTTTAGTTCAAATTATA 59.186 33.333 0.00 0.00 0.00 0.98
5561 8650 7.933215 TGTGAATCTCATCAGTTCAATCATT 57.067 32.000 0.00 0.00 34.04 2.57
5565 8654 7.608761 TGAATCTCATCAGTTCAATCATTCACA 59.391 33.333 0.00 0.00 0.00 3.58
5622 8837 4.330074 ACTCTTTGTTCACAGTTTCTCACG 59.670 41.667 0.00 0.00 0.00 4.35
5625 8840 2.351455 TGTTCACAGTTTCTCACGCAA 58.649 42.857 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.536570 TGATGTTTCAAGTGTCGTTGGA 58.463 40.909 0.00 0.00 0.00 3.53
1 2 3.961477 TGATGTTTCAAGTGTCGTTGG 57.039 42.857 0.00 0.00 0.00 3.77
2 3 4.143835 CGATGATGTTTCAAGTGTCGTTG 58.856 43.478 0.00 0.00 34.96 4.10
4 5 2.736721 CCGATGATGTTTCAAGTGTCGT 59.263 45.455 0.00 0.00 34.96 4.34
5 6 2.094258 CCCGATGATGTTTCAAGTGTCG 59.906 50.000 0.00 0.00 34.96 4.35
6 7 3.125316 GTCCCGATGATGTTTCAAGTGTC 59.875 47.826 0.00 0.00 34.96 3.67
7 8 3.074412 GTCCCGATGATGTTTCAAGTGT 58.926 45.455 0.00 0.00 34.96 3.55
9 10 2.346803 CGTCCCGATGATGTTTCAAGT 58.653 47.619 0.00 0.00 34.96 3.16
10 11 1.665679 CCGTCCCGATGATGTTTCAAG 59.334 52.381 0.00 0.00 34.96 3.02
11 12 1.677518 CCCGTCCCGATGATGTTTCAA 60.678 52.381 0.00 0.00 34.96 2.69
12 13 0.107897 CCCGTCCCGATGATGTTTCA 60.108 55.000 0.00 0.00 36.00 2.69
13 14 0.814010 CCCCGTCCCGATGATGTTTC 60.814 60.000 0.00 0.00 0.00 2.78
14 15 1.223487 CCCCGTCCCGATGATGTTT 59.777 57.895 0.00 0.00 0.00 2.83
15 16 2.908015 CCCCGTCCCGATGATGTT 59.092 61.111 0.00 0.00 0.00 2.71
16 17 3.861797 GCCCCGTCCCGATGATGT 61.862 66.667 0.00 0.00 0.00 3.06
17 18 4.626081 GGCCCCGTCCCGATGATG 62.626 72.222 0.00 0.00 0.00 3.07
30 31 4.097361 GTCCTTCCCGTCTGGCCC 62.097 72.222 0.00 0.00 0.00 5.80
31 32 4.097361 GGTCCTTCCCGTCTGGCC 62.097 72.222 0.00 0.00 0.00 5.36
32 33 1.262640 TAAGGTCCTTCCCGTCTGGC 61.263 60.000 7.61 0.00 36.75 4.85
33 34 1.497161 ATAAGGTCCTTCCCGTCTGG 58.503 55.000 7.61 0.00 36.75 3.86
34 35 2.158943 GGAATAAGGTCCTTCCCGTCTG 60.159 54.545 7.61 0.00 35.83 3.51
35 36 2.117051 GGAATAAGGTCCTTCCCGTCT 58.883 52.381 7.61 0.00 35.83 4.18
36 37 1.835531 TGGAATAAGGTCCTTCCCGTC 59.164 52.381 7.61 1.58 40.22 4.79
37 38 1.961133 TGGAATAAGGTCCTTCCCGT 58.039 50.000 7.61 0.00 40.22 5.28
38 39 4.041691 ACATATGGAATAAGGTCCTTCCCG 59.958 45.833 7.61 0.00 40.22 5.14
39 40 5.584551 ACATATGGAATAAGGTCCTTCCC 57.415 43.478 7.61 8.84 40.22 3.97
40 41 7.974504 TCTTACATATGGAATAAGGTCCTTCC 58.025 38.462 7.61 4.09 41.13 3.46
41 42 9.495572 CTTCTTACATATGGAATAAGGTCCTTC 57.504 37.037 15.06 0.00 38.62 3.46
42 43 9.225682 TCTTCTTACATATGGAATAAGGTCCTT 57.774 33.333 20.14 9.62 38.62 3.36
43 44 8.652290 GTCTTCTTACATATGGAATAAGGTCCT 58.348 37.037 20.14 0.00 38.62 3.85
44 45 7.599245 CGTCTTCTTACATATGGAATAAGGTCC 59.401 40.741 20.14 11.04 38.27 4.46
45 46 7.116519 GCGTCTTCTTACATATGGAATAAGGTC 59.883 40.741 20.14 14.32 29.06 3.85
46 47 6.929606 GCGTCTTCTTACATATGGAATAAGGT 59.070 38.462 20.14 0.00 29.06 3.50
47 48 6.369065 GGCGTCTTCTTACATATGGAATAAGG 59.631 42.308 20.14 10.24 29.06 2.69
48 49 6.089551 CGGCGTCTTCTTACATATGGAATAAG 59.910 42.308 16.24 16.24 29.06 1.73
49 50 5.924254 CGGCGTCTTCTTACATATGGAATAA 59.076 40.000 7.80 2.99 29.06 1.40
50 51 5.466819 CGGCGTCTTCTTACATATGGAATA 58.533 41.667 7.80 0.00 0.00 1.75
51 52 4.307432 CGGCGTCTTCTTACATATGGAAT 58.693 43.478 7.80 0.00 0.00 3.01
52 53 3.713288 CGGCGTCTTCTTACATATGGAA 58.287 45.455 7.80 3.55 0.00 3.53
53 54 2.545113 GCGGCGTCTTCTTACATATGGA 60.545 50.000 9.37 0.00 0.00 3.41
54 55 1.792949 GCGGCGTCTTCTTACATATGG 59.207 52.381 9.37 0.00 0.00 2.74
55 56 1.792949 GGCGGCGTCTTCTTACATATG 59.207 52.381 9.37 0.00 0.00 1.78
56 57 1.602165 CGGCGGCGTCTTCTTACATAT 60.602 52.381 24.74 0.00 0.00 1.78
57 58 0.248743 CGGCGGCGTCTTCTTACATA 60.249 55.000 24.74 0.00 0.00 2.29
58 59 1.518572 CGGCGGCGTCTTCTTACAT 60.519 57.895 24.74 0.00 0.00 2.29
59 60 2.126228 CGGCGGCGTCTTCTTACA 60.126 61.111 24.74 0.00 0.00 2.41
60 61 3.551915 GCGGCGGCGTCTTCTTAC 61.552 66.667 32.35 9.49 0.00 2.34
61 62 4.807039 GGCGGCGGCGTCTTCTTA 62.807 66.667 32.35 0.00 41.24 2.10
71 72 4.436998 AAGAAGACGAGGCGGCGG 62.437 66.667 9.78 1.88 41.28 6.13
72 73 3.181967 CAAGAAGACGAGGCGGCG 61.182 66.667 0.51 0.51 41.28 6.46
73 74 1.807573 CTCAAGAAGACGAGGCGGC 60.808 63.158 0.00 0.00 33.59 6.53
74 75 1.807573 GCTCAAGAAGACGAGGCGG 60.808 63.158 0.00 0.00 0.00 6.13
75 76 0.459237 ATGCTCAAGAAGACGAGGCG 60.459 55.000 0.00 0.00 0.00 5.52
76 77 2.586258 TATGCTCAAGAAGACGAGGC 57.414 50.000 0.00 0.00 0.00 4.70
77 78 4.047822 GTGATATGCTCAAGAAGACGAGG 58.952 47.826 0.00 0.00 35.07 4.63
78 79 4.676546 TGTGATATGCTCAAGAAGACGAG 58.323 43.478 0.00 0.00 35.07 4.18
79 80 4.718940 TGTGATATGCTCAAGAAGACGA 57.281 40.909 0.00 0.00 35.07 4.20
80 81 5.446473 GGTTTGTGATATGCTCAAGAAGACG 60.446 44.000 0.00 0.00 35.07 4.18
81 82 5.645497 AGGTTTGTGATATGCTCAAGAAGAC 59.355 40.000 0.00 0.00 35.07 3.01
82 83 5.809001 AGGTTTGTGATATGCTCAAGAAGA 58.191 37.500 0.00 0.00 35.07 2.87
83 84 7.119699 TGTTAGGTTTGTGATATGCTCAAGAAG 59.880 37.037 0.00 0.00 35.07 2.85
84 85 6.939730 TGTTAGGTTTGTGATATGCTCAAGAA 59.060 34.615 0.00 0.00 35.07 2.52
85 86 6.472016 TGTTAGGTTTGTGATATGCTCAAGA 58.528 36.000 0.00 0.00 35.07 3.02
86 87 6.741992 TGTTAGGTTTGTGATATGCTCAAG 57.258 37.500 0.00 0.00 35.07 3.02
87 88 6.939730 TCTTGTTAGGTTTGTGATATGCTCAA 59.060 34.615 0.00 0.00 35.07 3.02
88 89 6.472016 TCTTGTTAGGTTTGTGATATGCTCA 58.528 36.000 0.00 0.00 0.00 4.26
89 90 6.985188 TCTTGTTAGGTTTGTGATATGCTC 57.015 37.500 0.00 0.00 0.00 4.26
90 91 7.611467 TGAATCTTGTTAGGTTTGTGATATGCT 59.389 33.333 0.00 0.00 0.00 3.79
91 92 7.761409 TGAATCTTGTTAGGTTTGTGATATGC 58.239 34.615 0.00 0.00 0.00 3.14
92 93 9.166173 TCTGAATCTTGTTAGGTTTGTGATATG 57.834 33.333 0.00 0.00 0.00 1.78
93 94 9.739276 TTCTGAATCTTGTTAGGTTTGTGATAT 57.261 29.630 0.00 0.00 0.00 1.63
94 95 9.567776 TTTCTGAATCTTGTTAGGTTTGTGATA 57.432 29.630 0.00 0.00 0.00 2.15
95 96 8.463930 TTTCTGAATCTTGTTAGGTTTGTGAT 57.536 30.769 0.00 0.00 0.00 3.06
96 97 7.873719 TTTCTGAATCTTGTTAGGTTTGTGA 57.126 32.000 0.00 0.00 0.00 3.58
101 102 9.588096 AGGTTATTTTCTGAATCTTGTTAGGTT 57.412 29.630 0.00 0.00 0.00 3.50
113 114 9.705290 GGCTTCATTTTTAGGTTATTTTCTGAA 57.295 29.630 0.00 0.00 0.00 3.02
114 115 8.311109 GGGCTTCATTTTTAGGTTATTTTCTGA 58.689 33.333 0.00 0.00 0.00 3.27
115 116 7.549134 GGGGCTTCATTTTTAGGTTATTTTCTG 59.451 37.037 0.00 0.00 0.00 3.02
116 117 7.311046 GGGGGCTTCATTTTTAGGTTATTTTCT 60.311 37.037 0.00 0.00 0.00 2.52
117 118 6.821665 GGGGGCTTCATTTTTAGGTTATTTTC 59.178 38.462 0.00 0.00 0.00 2.29
118 119 6.575451 CGGGGGCTTCATTTTTAGGTTATTTT 60.575 38.462 0.00 0.00 0.00 1.82
119 120 5.105106 CGGGGGCTTCATTTTTAGGTTATTT 60.105 40.000 0.00 0.00 0.00 1.40
120 121 4.404394 CGGGGGCTTCATTTTTAGGTTATT 59.596 41.667 0.00 0.00 0.00 1.40
121 122 3.958147 CGGGGGCTTCATTTTTAGGTTAT 59.042 43.478 0.00 0.00 0.00 1.89
122 123 3.358118 CGGGGGCTTCATTTTTAGGTTA 58.642 45.455 0.00 0.00 0.00 2.85
123 124 2.176045 CGGGGGCTTCATTTTTAGGTT 58.824 47.619 0.00 0.00 0.00 3.50
124 125 1.847328 CGGGGGCTTCATTTTTAGGT 58.153 50.000 0.00 0.00 0.00 3.08
125 126 0.459899 GCGGGGGCTTCATTTTTAGG 59.540 55.000 0.00 0.00 0.00 2.69
126 127 0.459899 GGCGGGGGCTTCATTTTTAG 59.540 55.000 0.00 0.00 0.00 1.85
127 128 1.316706 CGGCGGGGGCTTCATTTTTA 61.317 55.000 0.00 0.00 0.00 1.52
128 129 2.645192 CGGCGGGGGCTTCATTTTT 61.645 57.895 0.00 0.00 0.00 1.94
129 130 3.068064 CGGCGGGGGCTTCATTTT 61.068 61.111 0.00 0.00 0.00 1.82
130 131 4.041762 TCGGCGGGGGCTTCATTT 62.042 61.111 7.21 0.00 0.00 2.32
131 132 4.796495 GTCGGCGGGGGCTTCATT 62.796 66.667 7.21 0.00 0.00 2.57
144 145 4.109675 ATCCCGGCCCTTTGTCGG 62.110 66.667 0.00 0.00 43.05 4.79
145 146 2.513897 GATCCCGGCCCTTTGTCG 60.514 66.667 0.00 0.00 0.00 4.35
146 147 2.124278 GGATCCCGGCCCTTTGTC 60.124 66.667 0.00 0.00 0.00 3.18
147 148 2.938798 TGGATCCCGGCCCTTTGT 60.939 61.111 9.90 0.00 0.00 2.83
148 149 2.440247 GTGGATCCCGGCCCTTTG 60.440 66.667 9.90 0.00 0.00 2.77
149 150 3.739613 GGTGGATCCCGGCCCTTT 61.740 66.667 9.90 0.00 0.00 3.11
157 158 4.176752 GGAGGCACGGTGGATCCC 62.177 72.222 9.90 2.27 0.00 3.85
158 159 2.746375 ATGGAGGCACGGTGGATCC 61.746 63.158 10.60 4.20 0.00 3.36
159 160 1.524621 CATGGAGGCACGGTGGATC 60.525 63.158 10.60 0.00 0.00 3.36
160 161 1.348008 ATCATGGAGGCACGGTGGAT 61.348 55.000 10.60 0.00 0.00 3.41
161 162 0.689412 TATCATGGAGGCACGGTGGA 60.689 55.000 10.60 0.00 0.00 4.02
162 163 0.532862 GTATCATGGAGGCACGGTGG 60.533 60.000 10.60 0.00 0.00 4.61
163 164 0.177836 TGTATCATGGAGGCACGGTG 59.822 55.000 3.15 3.15 0.00 4.94
164 165 0.908910 TTGTATCATGGAGGCACGGT 59.091 50.000 0.00 0.00 0.00 4.83
165 166 1.586422 CTTGTATCATGGAGGCACGG 58.414 55.000 0.00 0.00 0.00 4.94
166 167 1.138859 TCCTTGTATCATGGAGGCACG 59.861 52.381 0.00 0.00 33.63 5.34
167 168 3.181451 TGATCCTTGTATCATGGAGGCAC 60.181 47.826 9.54 0.00 40.24 5.01
168 169 3.047857 TGATCCTTGTATCATGGAGGCA 58.952 45.455 9.54 7.71 40.24 4.75
169 170 3.777106 TGATCCTTGTATCATGGAGGC 57.223 47.619 9.54 5.81 40.24 4.70
170 171 5.723405 TCCTATGATCCTTGTATCATGGAGG 59.277 44.000 10.63 9.46 43.72 4.30
171 172 6.666980 TCTCCTATGATCCTTGTATCATGGAG 59.333 42.308 22.76 22.76 46.74 3.86
172 173 6.438741 GTCTCCTATGATCCTTGTATCATGGA 59.561 42.308 10.63 11.96 43.72 3.41
173 174 6.626844 CGTCTCCTATGATCCTTGTATCATGG 60.627 46.154 9.11 6.44 44.43 3.66
174 175 6.151817 TCGTCTCCTATGATCCTTGTATCATG 59.848 42.308 9.11 0.00 44.43 3.07
175 176 6.249192 TCGTCTCCTATGATCCTTGTATCAT 58.751 40.000 4.86 4.86 46.05 2.45
176 177 5.631119 TCGTCTCCTATGATCCTTGTATCA 58.369 41.667 0.00 0.00 40.07 2.15
177 178 5.124776 CCTCGTCTCCTATGATCCTTGTATC 59.875 48.000 0.00 0.00 0.00 2.24
178 179 5.013547 CCTCGTCTCCTATGATCCTTGTAT 58.986 45.833 0.00 0.00 0.00 2.29
179 180 4.141228 ACCTCGTCTCCTATGATCCTTGTA 60.141 45.833 0.00 0.00 0.00 2.41
180 181 3.226777 CCTCGTCTCCTATGATCCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
181 182 3.005261 CACCTCGTCTCCTATGATCCTTG 59.995 52.174 0.00 0.00 0.00 3.61
182 183 3.117474 TCACCTCGTCTCCTATGATCCTT 60.117 47.826 0.00 0.00 0.00 3.36
183 184 2.443632 TCACCTCGTCTCCTATGATCCT 59.556 50.000 0.00 0.00 0.00 3.24
184 185 2.865079 TCACCTCGTCTCCTATGATCC 58.135 52.381 0.00 0.00 0.00 3.36
185 186 3.004944 GGTTCACCTCGTCTCCTATGATC 59.995 52.174 0.00 0.00 0.00 2.92
186 187 2.959707 GGTTCACCTCGTCTCCTATGAT 59.040 50.000 0.00 0.00 0.00 2.45
187 188 2.291346 TGGTTCACCTCGTCTCCTATGA 60.291 50.000 0.00 0.00 36.82 2.15
188 189 2.099921 CTGGTTCACCTCGTCTCCTATG 59.900 54.545 0.00 0.00 36.82 2.23
189 190 2.379972 CTGGTTCACCTCGTCTCCTAT 58.620 52.381 0.00 0.00 36.82 2.57
190 191 1.616187 CCTGGTTCACCTCGTCTCCTA 60.616 57.143 0.00 0.00 36.82 2.94
191 192 0.900647 CCTGGTTCACCTCGTCTCCT 60.901 60.000 0.00 0.00 36.82 3.69
192 193 1.592223 CCTGGTTCACCTCGTCTCC 59.408 63.158 0.00 0.00 36.82 3.71
193 194 1.592223 CCCTGGTTCACCTCGTCTC 59.408 63.158 0.00 0.00 36.82 3.36
194 195 1.913762 CCCCTGGTTCACCTCGTCT 60.914 63.158 0.00 0.00 36.82 4.18
195 196 2.663196 CCCCTGGTTCACCTCGTC 59.337 66.667 0.00 0.00 36.82 4.20
196 197 3.637273 GCCCCTGGTTCACCTCGT 61.637 66.667 0.00 0.00 36.82 4.18
197 198 4.760047 CGCCCCTGGTTCACCTCG 62.760 72.222 0.00 0.00 36.82 4.63
198 199 4.410400 CCGCCCCTGGTTCACCTC 62.410 72.222 0.00 0.00 36.82 3.85
221 222 3.591835 CTCCCTCTCGCCTCTCGC 61.592 72.222 0.00 0.00 38.27 5.03
222 223 2.904866 CCTCCCTCTCGCCTCTCG 60.905 72.222 0.00 0.00 40.15 4.04
223 224 2.520741 CCCTCCCTCTCGCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
224 225 1.955458 ATTCCCTCCCTCTCGCCTCT 61.955 60.000 0.00 0.00 0.00 3.69
225 226 1.051556 AATTCCCTCCCTCTCGCCTC 61.052 60.000 0.00 0.00 0.00 4.70
226 227 1.003573 AATTCCCTCCCTCTCGCCT 59.996 57.895 0.00 0.00 0.00 5.52
227 228 1.448069 GAATTCCCTCCCTCTCGCC 59.552 63.158 0.00 0.00 0.00 5.54
228 229 1.051556 AGGAATTCCCTCCCTCTCGC 61.052 60.000 21.22 0.00 43.31 5.03
229 230 2.158445 TCTAGGAATTCCCTCCCTCTCG 60.158 54.545 21.22 0.00 43.31 4.04
230 231 3.621682 TCTAGGAATTCCCTCCCTCTC 57.378 52.381 21.22 0.00 43.31 3.20
231 232 3.472848 TCATCTAGGAATTCCCTCCCTCT 59.527 47.826 21.22 3.06 43.31 3.69
232 233 3.837731 CTCATCTAGGAATTCCCTCCCTC 59.162 52.174 21.22 0.00 43.31 4.30
233 234 3.211000 ACTCATCTAGGAATTCCCTCCCT 59.789 47.826 21.22 4.59 43.31 4.20
234 235 3.592865 ACTCATCTAGGAATTCCCTCCC 58.407 50.000 21.22 0.00 43.31 4.30
235 236 5.279758 GCTAACTCATCTAGGAATTCCCTCC 60.280 48.000 21.22 0.00 43.31 4.30
236 237 5.305644 TGCTAACTCATCTAGGAATTCCCTC 59.694 44.000 21.22 0.00 43.31 4.30
238 239 5.512232 CCTGCTAACTCATCTAGGAATTCCC 60.512 48.000 21.22 3.34 36.42 3.97
239 240 5.305644 TCCTGCTAACTCATCTAGGAATTCC 59.694 44.000 17.31 17.31 31.80 3.01
240 241 6.412362 TCCTGCTAACTCATCTAGGAATTC 57.588 41.667 0.00 0.00 31.80 2.17
241 242 5.306678 CCTCCTGCTAACTCATCTAGGAATT 59.693 44.000 0.00 0.00 34.22 2.17
242 243 4.837860 CCTCCTGCTAACTCATCTAGGAAT 59.162 45.833 0.00 0.00 34.22 3.01
243 244 4.219115 CCTCCTGCTAACTCATCTAGGAA 58.781 47.826 0.00 0.00 34.22 3.36
244 245 3.437198 CCCTCCTGCTAACTCATCTAGGA 60.437 52.174 0.00 0.00 33.59 2.94
245 246 2.896685 CCCTCCTGCTAACTCATCTAGG 59.103 54.545 0.00 0.00 0.00 3.02
246 247 2.298729 GCCCTCCTGCTAACTCATCTAG 59.701 54.545 0.00 0.00 0.00 2.43
247 248 2.320781 GCCCTCCTGCTAACTCATCTA 58.679 52.381 0.00 0.00 0.00 1.98
248 249 1.127343 GCCCTCCTGCTAACTCATCT 58.873 55.000 0.00 0.00 0.00 2.90
249 250 0.833287 TGCCCTCCTGCTAACTCATC 59.167 55.000 0.00 0.00 0.00 2.92
250 251 0.543749 GTGCCCTCCTGCTAACTCAT 59.456 55.000 0.00 0.00 0.00 2.90
251 252 0.835971 TGTGCCCTCCTGCTAACTCA 60.836 55.000 0.00 0.00 0.00 3.41
252 253 0.324943 TTGTGCCCTCCTGCTAACTC 59.675 55.000 0.00 0.00 0.00 3.01
253 254 0.326264 CTTGTGCCCTCCTGCTAACT 59.674 55.000 0.00 0.00 0.00 2.24
254 255 0.678048 CCTTGTGCCCTCCTGCTAAC 60.678 60.000 0.00 0.00 0.00 2.34
255 256 0.840288 TCCTTGTGCCCTCCTGCTAA 60.840 55.000 0.00 0.00 0.00 3.09
256 257 1.229496 TCCTTGTGCCCTCCTGCTA 60.229 57.895 0.00 0.00 0.00 3.49
257 258 2.530151 TCCTTGTGCCCTCCTGCT 60.530 61.111 0.00 0.00 0.00 4.24
258 259 1.553690 TAGTCCTTGTGCCCTCCTGC 61.554 60.000 0.00 0.00 0.00 4.85
259 260 0.539051 CTAGTCCTTGTGCCCTCCTG 59.461 60.000 0.00 0.00 0.00 3.86
260 261 0.117340 ACTAGTCCTTGTGCCCTCCT 59.883 55.000 0.00 0.00 0.00 3.69
261 262 0.250513 CACTAGTCCTTGTGCCCTCC 59.749 60.000 0.00 0.00 30.52 4.30
262 263 3.842869 CACTAGTCCTTGTGCCCTC 57.157 57.895 0.00 0.00 30.52 4.30
267 268 1.070758 AGTGGTGCACTAGTCCTTGTG 59.929 52.381 17.98 4.78 43.46 3.33
268 269 1.070758 CAGTGGTGCACTAGTCCTTGT 59.929 52.381 17.98 0.00 43.43 3.16
269 270 1.609061 CCAGTGGTGCACTAGTCCTTG 60.609 57.143 17.98 1.38 43.43 3.61
270 271 0.687354 CCAGTGGTGCACTAGTCCTT 59.313 55.000 17.98 0.00 43.43 3.36
271 272 0.178932 TCCAGTGGTGCACTAGTCCT 60.179 55.000 17.98 0.88 43.43 3.85
272 273 0.037232 GTCCAGTGGTGCACTAGTCC 60.037 60.000 17.98 0.00 43.43 3.85
273 274 0.037232 GGTCCAGTGGTGCACTAGTC 60.037 60.000 17.98 1.62 43.43 2.59
274 275 0.471971 AGGTCCAGTGGTGCACTAGT 60.472 55.000 17.98 11.30 43.43 2.57
275 276 0.036952 CAGGTCCAGTGGTGCACTAG 60.037 60.000 17.98 0.00 43.43 2.57
276 277 0.471022 TCAGGTCCAGTGGTGCACTA 60.471 55.000 17.98 8.10 43.43 2.74
277 278 1.130054 ATCAGGTCCAGTGGTGCACT 61.130 55.000 17.98 0.49 46.51 4.40
278 279 0.957395 CATCAGGTCCAGTGGTGCAC 60.957 60.000 8.80 8.80 34.10 4.57
279 280 1.126948 TCATCAGGTCCAGTGGTGCA 61.127 55.000 9.54 0.00 0.00 4.57
288 289 6.757897 TTACAAAACATCATCATCAGGTCC 57.242 37.500 0.00 0.00 0.00 4.46
322 323 8.166066 CGTCATTATTTTCTACATGAACACGAA 58.834 33.333 0.00 0.00 33.88 3.85
350 351 1.656095 GCGAGCAGTAACAAGCTACAG 59.344 52.381 0.00 0.00 42.04 2.74
363 364 1.007011 CGACGAAAATAGTGCGAGCAG 60.007 52.381 0.00 0.00 0.00 4.24
401 2915 1.746220 TGGTACATTGCCCGTTTATGC 59.254 47.619 0.00 0.00 0.00 3.14
434 2951 2.627221 ACCACTGATCCGATGATCTGAG 59.373 50.000 14.00 7.76 46.34 3.35
461 2978 0.034756 TGTCGTGGGGATGTGTGAAG 59.965 55.000 0.00 0.00 0.00 3.02
462 2979 0.250124 GTGTCGTGGGGATGTGTGAA 60.250 55.000 0.00 0.00 0.00 3.18
463 2980 1.369692 GTGTCGTGGGGATGTGTGA 59.630 57.895 0.00 0.00 0.00 3.58
464 2981 1.671054 GGTGTCGTGGGGATGTGTG 60.671 63.158 0.00 0.00 0.00 3.82
482 2999 1.987807 ATCATCTGAAGGGGCCCGTG 61.988 60.000 19.90 5.78 0.00 4.94
505 3022 1.531578 CACGAAGATCGCCGAGATAGA 59.468 52.381 14.91 0.00 45.12 1.98
514 3031 3.918220 CGGCTGCACGAAGATCGC 61.918 66.667 0.50 0.00 45.12 4.58
568 3104 2.271607 GACGATGCCTCAGCTCGTGA 62.272 60.000 14.16 0.00 45.97 4.35
569 3105 1.875813 GACGATGCCTCAGCTCGTG 60.876 63.158 14.16 0.00 45.97 4.35
577 3113 1.656095 CGACTCTTTTGACGATGCCTC 59.344 52.381 0.00 0.00 0.00 4.70
828 3386 2.450243 GTGGTCTGGGGGAGGAGA 59.550 66.667 0.00 0.00 0.00 3.71
838 3396 1.073199 GGGTCTTGGGTGTGGTCTG 59.927 63.158 0.00 0.00 0.00 3.51
839 3397 0.991355 TTGGGTCTTGGGTGTGGTCT 60.991 55.000 0.00 0.00 0.00 3.85
840 3398 0.822121 GTTGGGTCTTGGGTGTGGTC 60.822 60.000 0.00 0.00 0.00 4.02
841 3399 1.229076 GTTGGGTCTTGGGTGTGGT 59.771 57.895 0.00 0.00 0.00 4.16
845 3403 1.318576 GACAAGTTGGGTCTTGGGTG 58.681 55.000 7.96 0.00 46.11 4.61
916 3772 2.757077 GGGGGTGGAACAGTGGAG 59.243 66.667 0.00 0.00 41.80 3.86
917 3773 3.246112 CGGGGGTGGAACAGTGGA 61.246 66.667 0.00 0.00 41.80 4.02
1341 4241 2.979197 CTCGAGCCCGACGTGAACT 61.979 63.158 0.00 0.00 40.30 3.01
1416 4316 2.355197 CGCACATCACCATTTACTCCA 58.645 47.619 0.00 0.00 0.00 3.86
1419 4319 1.819928 TGCGCACATCACCATTTACT 58.180 45.000 5.66 0.00 0.00 2.24
1420 4320 2.849880 ATGCGCACATCACCATTTAC 57.150 45.000 14.90 0.00 0.00 2.01
1421 4321 2.751806 TGAATGCGCACATCACCATTTA 59.248 40.909 14.90 0.00 34.62 1.40
1422 4322 1.545136 TGAATGCGCACATCACCATTT 59.455 42.857 14.90 0.00 34.62 2.32
1423 4323 1.175654 TGAATGCGCACATCACCATT 58.824 45.000 14.90 0.00 34.62 3.16
1424 4324 1.395635 ATGAATGCGCACATCACCAT 58.604 45.000 24.91 13.81 34.62 3.55
1425 4325 1.135344 CAATGAATGCGCACATCACCA 60.135 47.619 24.91 12.34 34.62 4.17
1433 4333 0.452987 GAGCTTCCAATGAATGCGCA 59.547 50.000 14.96 14.96 32.99 6.09
1453 4353 2.923655 CTCGACAAATCACACATAGCGT 59.076 45.455 0.00 0.00 0.00 5.07
1454 4354 2.285256 GCTCGACAAATCACACATAGCG 60.285 50.000 0.00 0.00 0.00 4.26
1458 4358 1.466167 GCAGCTCGACAAATCACACAT 59.534 47.619 0.00 0.00 0.00 3.21
1459 4359 0.867746 GCAGCTCGACAAATCACACA 59.132 50.000 0.00 0.00 0.00 3.72
1538 4438 2.010145 TGACTAAGGCAGATTCACGC 57.990 50.000 0.00 0.00 0.00 5.34
1539 4439 4.631377 TGATTTGACTAAGGCAGATTCACG 59.369 41.667 0.00 0.00 0.00 4.35
1608 4510 3.535860 CTTCGCACGCTTTATATGAAGC 58.464 45.455 19.51 19.51 46.59 3.86
1609 4511 3.604772 GCCTTCGCACGCTTTATATGAAG 60.605 47.826 2.91 2.91 34.03 3.02
1611 4513 1.864711 GCCTTCGCACGCTTTATATGA 59.135 47.619 0.00 0.00 34.03 2.15
1612 4514 1.597195 TGCCTTCGCACGCTTTATATG 59.403 47.619 0.00 0.00 41.12 1.78
1613 4515 1.867233 CTGCCTTCGCACGCTTTATAT 59.133 47.619 0.00 0.00 41.12 0.86
1615 4517 1.369091 CCTGCCTTCGCACGCTTTAT 61.369 55.000 0.00 0.00 41.12 1.40
1616 4518 2.032634 CCTGCCTTCGCACGCTTTA 61.033 57.895 0.00 0.00 41.12 1.85
1617 4519 3.357079 CCTGCCTTCGCACGCTTT 61.357 61.111 0.00 0.00 41.12 3.51
1621 4523 2.511373 TATGCCTGCCTTCGCACG 60.511 61.111 0.00 0.00 41.12 5.34
1622 4524 0.744414 TTCTATGCCTGCCTTCGCAC 60.744 55.000 0.00 0.00 41.12 5.34
1624 4526 0.378610 GTTTCTATGCCTGCCTTCGC 59.621 55.000 0.00 0.00 0.00 4.70
1625 4527 1.017387 GGTTTCTATGCCTGCCTTCG 58.983 55.000 0.00 0.00 0.00 3.79
1626 4528 1.017387 CGGTTTCTATGCCTGCCTTC 58.983 55.000 0.00 0.00 0.00 3.46
1628 4530 0.618458 TTCGGTTTCTATGCCTGCCT 59.382 50.000 0.00 0.00 0.00 4.75
1629 4531 1.017387 CTTCGGTTTCTATGCCTGCC 58.983 55.000 0.00 0.00 0.00 4.85
1631 4533 2.029838 AGCTTCGGTTTCTATGCCTG 57.970 50.000 0.00 0.00 0.00 4.85
1632 4534 3.906720 TTAGCTTCGGTTTCTATGCCT 57.093 42.857 0.00 0.00 0.00 4.75
1633 4535 4.957759 TTTTAGCTTCGGTTTCTATGCC 57.042 40.909 0.00 0.00 0.00 4.40
1635 4537 5.273944 GCCATTTTAGCTTCGGTTTCTATG 58.726 41.667 0.00 0.00 0.00 2.23
1637 4539 3.372822 CGCCATTTTAGCTTCGGTTTCTA 59.627 43.478 0.00 0.00 0.00 2.10
1638 4540 2.161609 CGCCATTTTAGCTTCGGTTTCT 59.838 45.455 0.00 0.00 0.00 2.52
1639 4541 2.515912 CGCCATTTTAGCTTCGGTTTC 58.484 47.619 0.00 0.00 0.00 2.78
1642 4544 0.676782 AGCGCCATTTTAGCTTCGGT 60.677 50.000 2.29 0.00 38.13 4.69
1643 4545 0.028110 GAGCGCCATTTTAGCTTCGG 59.972 55.000 2.29 0.00 41.84 4.30
1644 4546 0.726827 TGAGCGCCATTTTAGCTTCG 59.273 50.000 2.29 0.00 41.84 3.79
1645 4547 3.366719 GAATGAGCGCCATTTTAGCTTC 58.633 45.455 20.28 7.59 45.00 3.86
1647 4549 1.331756 CGAATGAGCGCCATTTTAGCT 59.668 47.619 20.28 0.00 45.00 3.32
1648 4550 1.746760 CGAATGAGCGCCATTTTAGC 58.253 50.000 20.28 10.18 45.00 3.09
1658 4560 0.302890 GTTGGAGATGCGAATGAGCG 59.697 55.000 0.00 0.00 40.67 5.03
1660 4588 1.303309 GGGTTGGAGATGCGAATGAG 58.697 55.000 0.00 0.00 0.00 2.90
1668 4596 2.770802 AGAGATCTGTGGGTTGGAGATG 59.229 50.000 0.00 0.00 0.00 2.90
1670 4598 2.461695 GAGAGATCTGTGGGTTGGAGA 58.538 52.381 0.00 0.00 0.00 3.71
1674 4602 0.247460 TGCGAGAGATCTGTGGGTTG 59.753 55.000 0.00 0.00 0.00 3.77
1677 4605 1.683385 TGTATGCGAGAGATCTGTGGG 59.317 52.381 0.00 0.00 0.00 4.61
1681 4609 3.739810 CCACAATGTATGCGAGAGATCTG 59.260 47.826 0.00 0.00 0.00 2.90
1690 4618 1.677576 AGAATGCCCACAATGTATGCG 59.322 47.619 2.61 0.00 0.00 4.73
1694 4622 3.346315 CACAGAGAATGCCCACAATGTA 58.654 45.455 0.00 0.00 0.00 2.29
1700 4628 0.745845 ATCGCACAGAGAATGCCCAC 60.746 55.000 0.00 0.00 40.09 4.61
1733 4759 3.806316 AGAGGAACAAAAATGTACGCG 57.194 42.857 3.53 3.53 0.00 6.01
1734 4760 8.515473 AAAAATAGAGGAACAAAAATGTACGC 57.485 30.769 0.00 0.00 0.00 4.42
1793 4819 6.371548 TCAGTAAGAAATGAGAAATGGGTTCG 59.628 38.462 0.00 0.00 41.52 3.95
1805 4831 7.145985 GCCGATACTACATCAGTAAGAAATGA 58.854 38.462 0.00 0.00 43.00 2.57
1809 4835 4.023450 CCGCCGATACTACATCAGTAAGAA 60.023 45.833 0.00 0.00 43.00 2.52
2075 5104 2.192187 TGCATTTGTGGCTGCACGA 61.192 52.632 0.50 0.00 43.11 4.35
2236 5265 5.182380 GTGCCTATACTGCCTAAACAAACAA 59.818 40.000 0.00 0.00 0.00 2.83
2263 5292 3.885297 CAGTCCAATCATTCCGGCTAATT 59.115 43.478 0.00 0.00 0.00 1.40
2443 5478 3.421231 GCTACATATACAGTGTCGCGAAC 59.579 47.826 12.06 11.88 30.32 3.95
2476 5511 4.619863 GCATGCACAGTGAATCCAAATTCT 60.620 41.667 14.21 0.00 41.63 2.40
2566 5602 2.027285 TGCTCGAGGGACATGATCAAAA 60.027 45.455 15.58 0.00 0.00 2.44
2738 5777 1.548081 TGTGCATTCCCTGTTCCATG 58.452 50.000 0.00 0.00 0.00 3.66
2765 5804 9.826574 ACTCATCAGTTTGTACACTAAAACTAA 57.173 29.630 9.71 0.00 43.09 2.24
2879 5918 2.238144 ACTCTGATGATGACCCAAGGTG 59.762 50.000 0.00 0.00 35.25 4.00
2882 5921 4.484537 AAGACTCTGATGATGACCCAAG 57.515 45.455 0.00 0.00 0.00 3.61
2894 5933 9.650539 CTTGAAATCTCATTCTTAAGACTCTGA 57.349 33.333 4.18 7.87 0.00 3.27
3026 6065 9.281371 CTGCAGAATTAAATCCATCAGATCTTA 57.719 33.333 8.42 0.00 32.47 2.10
3175 6214 4.157289 TCTTGCTGCTCATCCAAAAGATTC 59.843 41.667 0.00 0.00 30.59 2.52
3182 6221 1.100510 GCATCTTGCTGCTCATCCAA 58.899 50.000 0.00 0.00 40.96 3.53
3226 6265 2.357517 CGTGCTTGCCGGAGTTCT 60.358 61.111 5.05 0.00 0.00 3.01
3250 6289 1.973812 GCTTTCCAGCTCACCCACC 60.974 63.158 0.00 0.00 43.51 4.61
3799 6838 1.629043 TCTCCGCTTGTTCCACTACT 58.371 50.000 0.00 0.00 0.00 2.57
3832 6871 3.556633 CCTGTGCTCTGACTGACTTGATT 60.557 47.826 0.00 0.00 0.00 2.57
3837 6876 1.549620 CATCCTGTGCTCTGACTGACT 59.450 52.381 0.00 0.00 0.00 3.41
3877 6916 1.649321 TGTCCTCTGATTCTGCTGGT 58.351 50.000 0.00 0.00 0.00 4.00
3886 6925 8.206867 TCGAAAATTGAGAATATGTCCTCTGAT 58.793 33.333 0.00 0.00 0.00 2.90
3892 6931 7.011857 AGCTCTTCGAAAATTGAGAATATGTCC 59.988 37.037 14.41 0.00 0.00 4.02
3901 6940 2.158449 ACGCAGCTCTTCGAAAATTGAG 59.842 45.455 0.00 3.48 0.00 3.02
3910 6949 2.734673 GCTTGGACGCAGCTCTTCG 61.735 63.158 0.00 0.00 34.15 3.79
3928 6967 3.190874 GTCCTTAATGACAGGCTCTTCG 58.809 50.000 6.06 0.00 35.29 3.79
3949 6988 2.284263 TCTTGTAGCACTGCTCGATG 57.716 50.000 6.86 0.00 40.44 3.84
3978 7017 7.186570 TCTTGGATCTCTGATTCACATACAA 57.813 36.000 0.00 0.00 0.00 2.41
4126 7165 2.107378 TGAACCACTTGAACCCTGCATA 59.893 45.455 0.00 0.00 0.00 3.14
4272 7311 2.141011 CTTGGGCTGGGTCATGGTCA 62.141 60.000 0.00 0.00 0.00 4.02
4648 7687 2.770164 TTCTTCTAGCCTTGCACCTC 57.230 50.000 0.00 0.00 0.00 3.85
4649 7688 3.728385 ATTTCTTCTAGCCTTGCACCT 57.272 42.857 0.00 0.00 0.00 4.00
4699 7758 6.096282 CCCTAAGACAACAACAGGAAGAAAAA 59.904 38.462 0.00 0.00 0.00 1.94
4704 7763 4.065789 GACCCTAAGACAACAACAGGAAG 58.934 47.826 0.00 0.00 0.00 3.46
4767 7827 5.524284 CCGACTTGACTCGATTGATCTATT 58.476 41.667 0.00 0.00 35.58 1.73
4769 7829 3.243101 GCCGACTTGACTCGATTGATCTA 60.243 47.826 0.00 0.00 35.58 1.98
4771 7831 1.855360 GCCGACTTGACTCGATTGATC 59.145 52.381 0.00 0.00 35.58 2.92
4772 7832 1.471676 GGCCGACTTGACTCGATTGAT 60.472 52.381 0.00 0.00 35.58 2.57
4773 7833 0.108804 GGCCGACTTGACTCGATTGA 60.109 55.000 0.00 0.00 35.58 2.57
4774 7834 0.108615 AGGCCGACTTGACTCGATTG 60.109 55.000 0.00 0.00 35.58 2.67
4775 7835 0.608640 AAGGCCGACTTGACTCGATT 59.391 50.000 0.00 0.00 38.21 3.34
4776 7836 0.608640 AAAGGCCGACTTGACTCGAT 59.391 50.000 0.00 0.00 39.96 3.59
4777 7837 0.319555 CAAAGGCCGACTTGACTCGA 60.320 55.000 9.02 0.00 39.96 4.04
4778 7838 0.600255 ACAAAGGCCGACTTGACTCG 60.600 55.000 18.54 0.00 39.96 4.18
4779 7839 0.868406 CACAAAGGCCGACTTGACTC 59.132 55.000 18.54 0.00 39.96 3.36
4780 7840 0.535102 CCACAAAGGCCGACTTGACT 60.535 55.000 18.54 0.00 39.96 3.41
4781 7841 1.515521 CCCACAAAGGCCGACTTGAC 61.516 60.000 18.54 0.00 39.96 3.18
4821 7881 1.074471 ATATCCCCAGAGCCACGGT 60.074 57.895 0.00 0.00 0.00 4.83
4844 7904 4.449068 CACCGCAGCCTATCAAAATAGTAG 59.551 45.833 0.00 0.00 34.20 2.57
4845 7905 4.100344 TCACCGCAGCCTATCAAAATAGTA 59.900 41.667 0.00 0.00 34.20 1.82
4846 7906 3.118408 TCACCGCAGCCTATCAAAATAGT 60.118 43.478 0.00 0.00 34.20 2.12
4847 7907 3.466836 TCACCGCAGCCTATCAAAATAG 58.533 45.455 0.00 0.00 35.56 1.73
4848 7908 3.133901 TCTCACCGCAGCCTATCAAAATA 59.866 43.478 0.00 0.00 0.00 1.40
4881 7941 7.441157 TGCTGCCTGTTTATGTCTATATTACAC 59.559 37.037 0.00 0.00 0.00 2.90
4961 8026 5.413523 GGAGAAGGGAGATAGACGATAGAAC 59.586 48.000 0.00 0.00 41.38 3.01
4962 8027 5.515184 GGGAGAAGGGAGATAGACGATAGAA 60.515 48.000 0.00 0.00 41.38 2.10
4963 8028 4.019141 GGGAGAAGGGAGATAGACGATAGA 60.019 50.000 0.00 0.00 41.38 1.98
4964 8029 4.018779 AGGGAGAAGGGAGATAGACGATAG 60.019 50.000 0.00 0.00 46.19 2.08
4965 8030 3.917629 AGGGAGAAGGGAGATAGACGATA 59.082 47.826 0.00 0.00 0.00 2.92
4966 8031 2.719705 AGGGAGAAGGGAGATAGACGAT 59.280 50.000 0.00 0.00 0.00 3.73
4967 8032 2.136863 AGGGAGAAGGGAGATAGACGA 58.863 52.381 0.00 0.00 0.00 4.20
4968 8033 2.668144 AGGGAGAAGGGAGATAGACG 57.332 55.000 0.00 0.00 0.00 4.18
4969 8034 7.450323 GCATATATAGGGAGAAGGGAGATAGAC 59.550 44.444 0.00 0.00 0.00 2.59
4970 8035 7.354942 AGCATATATAGGGAGAAGGGAGATAGA 59.645 40.741 0.00 0.00 0.00 1.98
4974 8039 5.523588 CAGCATATATAGGGAGAAGGGAGA 58.476 45.833 0.00 0.00 0.00 3.71
5105 8173 3.385384 GCTTTCCCAAGGCAGGCC 61.385 66.667 0.97 0.97 0.00 5.19
5110 8178 1.433471 GCATACGCTTTCCCAAGGC 59.567 57.895 0.00 0.00 34.30 4.35
5111 8179 1.024579 ACGCATACGCTTTCCCAAGG 61.025 55.000 0.00 0.00 45.53 3.61
5112 8180 0.373716 GACGCATACGCTTTCCCAAG 59.626 55.000 0.00 0.00 45.53 3.61
5113 8181 1.355796 CGACGCATACGCTTTCCCAA 61.356 55.000 0.00 0.00 45.53 4.12
5114 8182 1.807981 CGACGCATACGCTTTCCCA 60.808 57.895 0.00 0.00 45.53 4.37
5115 8183 1.356527 AACGACGCATACGCTTTCCC 61.357 55.000 0.00 0.00 45.53 3.97
5116 8184 0.024619 GAACGACGCATACGCTTTCC 59.975 55.000 0.00 0.00 45.53 3.13
5118 8186 1.389106 GAAGAACGACGCATACGCTTT 59.611 47.619 0.00 0.00 45.53 3.51
5119 8187 0.989890 GAAGAACGACGCATACGCTT 59.010 50.000 0.00 0.00 45.53 4.68
5120 8188 0.170561 AGAAGAACGACGCATACGCT 59.829 50.000 0.00 0.00 45.53 5.07
5121 8189 0.566593 GAGAAGAACGACGCATACGC 59.433 55.000 0.00 0.00 45.53 4.42
5123 8191 1.135199 TGGGAGAAGAACGACGCATAC 60.135 52.381 0.00 0.00 0.00 2.39
5181 8249 2.665185 GTCGGGTGTGTGAGGTGC 60.665 66.667 0.00 0.00 0.00 5.01
5183 8251 2.507854 CCAGTCGGGTGTGTGAGGT 61.508 63.158 0.00 0.00 0.00 3.85
5184 8252 2.343758 CCAGTCGGGTGTGTGAGG 59.656 66.667 0.00 0.00 0.00 3.86
5185 8253 2.357517 GCCAGTCGGGTGTGTGAG 60.358 66.667 0.00 0.00 39.65 3.51
5186 8254 4.293648 CGCCAGTCGGGTGTGTGA 62.294 66.667 0.00 0.00 42.49 3.58
5272 8341 2.945315 CTAGTTAGCACGGCAGTCG 58.055 57.895 0.00 0.00 45.88 4.18
5319 8388 3.617263 GTGAGACAAACTATAACCGCTGG 59.383 47.826 0.00 0.00 0.00 4.85
5332 8401 5.011635 TCCAGCTACTAATGTGTGAGACAAA 59.988 40.000 0.00 0.00 38.36 2.83
5335 8404 4.158764 AGTCCAGCTACTAATGTGTGAGAC 59.841 45.833 0.00 0.00 0.00 3.36
5336 8405 4.158579 CAGTCCAGCTACTAATGTGTGAGA 59.841 45.833 0.00 0.00 0.00 3.27
5337 8406 4.428209 CAGTCCAGCTACTAATGTGTGAG 58.572 47.826 0.00 0.00 0.00 3.51
5349 8420 1.180907 CTGTGAGAGCAGTCCAGCTA 58.819 55.000 0.00 0.00 46.75 3.32
5359 8444 2.351111 GCAGTTGCTAATCTGTGAGAGC 59.649 50.000 0.00 0.00 38.21 4.09
5384 8469 6.144402 GTGAGACAAAATGGCAACTGTTATTG 59.856 38.462 0.00 0.00 37.61 1.90
5425 8510 6.036577 AGATAAAATCCAACCGCAAATTGT 57.963 33.333 0.00 0.00 0.00 2.71
5429 8514 4.520874 TGTGAGATAAAATCCAACCGCAAA 59.479 37.500 0.00 0.00 0.00 3.68
5474 8560 5.630680 TGAACTAAACCACGACGAGTAAATC 59.369 40.000 0.00 0.00 0.00 2.17
5475 8561 5.531634 TGAACTAAACCACGACGAGTAAAT 58.468 37.500 0.00 0.00 0.00 1.40
5476 8562 4.930963 TGAACTAAACCACGACGAGTAAA 58.069 39.130 0.00 0.00 0.00 2.01
5477 8563 4.566545 TGAACTAAACCACGACGAGTAA 57.433 40.909 0.00 0.00 0.00 2.24
5478 8564 4.566545 TTGAACTAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
5479 8565 3.441496 TTGAACTAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
5480 8566 4.985044 ATTTGAACTAAACCACGACGAG 57.015 40.909 0.00 0.00 0.00 4.18
5481 8567 8.706492 ATATAATTTGAACTAAACCACGACGA 57.294 30.769 0.00 0.00 0.00 4.20
5482 8568 9.839589 GTATATAATTTGAACTAAACCACGACG 57.160 33.333 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.