Multiple sequence alignment - TraesCS2D01G468800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G468800 chr2D 100.000 4376 0 0 1 4376 573972833 573968458 0.000000e+00 8082.0
1 TraesCS2D01G468800 chr2D 86.477 562 59 4 1380 1925 14348998 14349558 6.260000e-168 601.0
2 TraesCS2D01G468800 chr2D 83.689 515 67 12 2573 3083 14349591 14350092 1.840000e-128 470.0
3 TraesCS2D01G468800 chr2D 71.599 1933 427 76 1199 3058 19067325 19069208 2.430000e-112 416.0
4 TraesCS2D01G468800 chr2B 96.285 3284 86 11 1 3258 689874011 689870738 0.000000e+00 5356.0
5 TraesCS2D01G468800 chr2B 92.381 735 24 6 3316 4048 689870743 689870039 0.000000e+00 1018.0
6 TraesCS2D01G468800 chr2B 83.422 187 27 4 2869 3052 13405864 13405679 2.090000e-38 171.0
7 TraesCS2D01G468800 chr2B 74.378 402 101 2 1617 2017 13472666 13473066 2.090000e-38 171.0
8 TraesCS2D01G468800 chr2A 95.972 2259 64 3 992 3229 712555817 712553565 0.000000e+00 3642.0
9 TraesCS2D01G468800 chr2A 83.326 2129 289 39 1007 3087 16602565 16604675 0.000000e+00 1905.0
10 TraesCS2D01G468800 chr2A 96.245 1012 27 6 1 1008 712558509 712557505 0.000000e+00 1648.0
11 TraesCS2D01G468800 chr2A 90.609 1150 60 19 3254 4376 712553573 712552445 0.000000e+00 1482.0
12 TraesCS2D01G468800 chr2A 85.044 341 46 4 2764 3103 16618852 16619188 4.190000e-90 342.0
13 TraesCS2D01G468800 chr2A 97.619 42 1 0 3739 3780 67537642 67537601 6.070000e-09 73.1
14 TraesCS2D01G468800 chr7A 87.422 803 77 6 1083 1884 19308482 19309261 0.000000e+00 902.0
15 TraesCS2D01G468800 chr7A 82.099 324 44 5 2752 3072 19309424 19309736 9.330000e-67 265.0
16 TraesCS2D01G468800 chr7A 90.000 70 7 0 2607 2676 19309321 19309390 1.680000e-14 91.6
17 TraesCS2D01G468800 chr7A 91.837 49 4 0 3739 3787 164786729 164786681 7.850000e-08 69.4
18 TraesCS2D01G468800 chrUn 85.833 120 17 0 1733 1852 327034613 327034494 1.280000e-25 128.0
19 TraesCS2D01G468800 chr1B 85.833 120 17 0 1733 1852 652291511 652291392 1.280000e-25 128.0
20 TraesCS2D01G468800 chr1B 97.500 40 1 0 3741 3780 57002507 57002546 7.850000e-08 69.4
21 TraesCS2D01G468800 chr4B 82.677 127 22 0 1725 1851 667608799 667608925 3.580000e-21 113.0
22 TraesCS2D01G468800 chr3A 100.000 42 0 0 3739 3780 494040275 494040316 1.300000e-10 78.7
23 TraesCS2D01G468800 chr3A 97.619 42 1 0 3739 3780 32122395 32122354 6.070000e-09 73.1
24 TraesCS2D01G468800 chr4D 97.619 42 1 0 3739 3780 453044685 453044644 6.070000e-09 73.1
25 TraesCS2D01G468800 chr1A 97.500 40 1 0 3741 3780 36568567 36568606 7.850000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G468800 chr2D 573968458 573972833 4375 True 8082.000000 8082 100.000000 1 4376 1 chr2D.!!$R1 4375
1 TraesCS2D01G468800 chr2D 14348998 14350092 1094 False 535.500000 601 85.083000 1380 3083 2 chr2D.!!$F2 1703
2 TraesCS2D01G468800 chr2D 19067325 19069208 1883 False 416.000000 416 71.599000 1199 3058 1 chr2D.!!$F1 1859
3 TraesCS2D01G468800 chr2B 689870039 689874011 3972 True 3187.000000 5356 94.333000 1 4048 2 chr2B.!!$R2 4047
4 TraesCS2D01G468800 chr2A 712552445 712558509 6064 True 2257.333333 3642 94.275333 1 4376 3 chr2A.!!$R2 4375
5 TraesCS2D01G468800 chr2A 16602565 16604675 2110 False 1905.000000 1905 83.326000 1007 3087 1 chr2A.!!$F1 2080
6 TraesCS2D01G468800 chr7A 19308482 19309736 1254 False 419.533333 902 86.507000 1083 3072 3 chr7A.!!$F1 1989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 872 4.330074 CCGATTGGAAAGTAGTCACATGAC 59.670 45.833 0.0 3.72 40.77 3.06 F
1144 2855 0.547471 TGTCCTCATCCTCCTTGCCA 60.547 55.000 0.0 0.00 0.00 4.92 F
2382 4174 0.526662 ACGAGGTTGACGAGGATGAC 59.473 55.000 0.0 0.00 34.70 3.06 F
3243 5098 0.454957 CGCCGATGGAAAGCAAACAG 60.455 55.000 0.0 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 3756 0.179000 GTGCATCCAGGTAGACCCAG 59.821 60.0 0.00 0.0 36.42 4.45 R
2472 4270 0.598065 GAAACTCACGGCCAAATGCT 59.402 50.0 2.24 0.0 40.92 3.79 R
3290 5145 0.326927 TTCCGGTTCTGGTTCCATCC 59.673 55.0 0.00 0.0 0.00 3.51 R
4303 6184 0.725117 GCATCGAGTACAAAACCCGG 59.275 55.0 0.00 0.0 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
329 330 7.014711 AGGATGAGACGAGCAGAGATTTAATTA 59.985 37.037 0.00 0.00 0.00 1.40
832 839 7.338800 AGATTCGGTTTTCTTCATGCATAAT 57.661 32.000 0.00 0.00 0.00 1.28
833 840 8.450578 AGATTCGGTTTTCTTCATGCATAATA 57.549 30.769 0.00 0.00 0.00 0.98
834 841 8.902806 AGATTCGGTTTTCTTCATGCATAATAA 58.097 29.630 0.00 0.00 0.00 1.40
865 872 4.330074 CCGATTGGAAAGTAGTCACATGAC 59.670 45.833 0.00 3.72 40.77 3.06
878 885 5.039480 GTCACATGACAAATGAACAGAGG 57.961 43.478 7.15 0.00 44.18 3.69
903 910 7.118390 GGGTCCATAATTAGAGTGAATCAATCG 59.882 40.741 5.00 0.00 33.45 3.34
996 1003 6.148270 ACGAAACATCACAACAGTATTACG 57.852 37.500 0.00 0.00 0.00 3.18
1144 2855 0.547471 TGTCCTCATCCTCCTTGCCA 60.547 55.000 0.00 0.00 0.00 4.92
1440 3151 3.702548 TGTACAAGCACATATACCTCGGT 59.297 43.478 0.00 0.00 0.00 4.69
1486 3200 3.483421 GCATCCATCATCATTCTCACCA 58.517 45.455 0.00 0.00 0.00 4.17
2215 3983 3.688159 ACGAGTGCACCCGTACCC 61.688 66.667 25.62 0.00 37.23 3.69
2241 4018 3.952508 TGCGGGAGAGCAGCCAAA 61.953 61.111 0.00 0.00 42.92 3.28
2271 4048 0.685097 TGGAAGAGGGTTGGAACGAG 59.315 55.000 0.00 0.00 0.00 4.18
2296 4073 2.171840 GGCACTCTGAGTCTGAAGGTA 58.828 52.381 7.49 0.00 0.00 3.08
2382 4174 0.526662 ACGAGGTTGACGAGGATGAC 59.473 55.000 0.00 0.00 34.70 3.06
2412 4204 4.273235 GCATATTCCATGAATGACGTCACA 59.727 41.667 22.71 16.00 33.95 3.58
2490 4288 1.812571 CTAGCATTTGGCCGTGAGTTT 59.187 47.619 0.00 0.00 46.50 2.66
2616 4429 2.496470 GTCGGAGTACCTCATGTTCCTT 59.504 50.000 0.00 0.00 31.08 3.36
2661 4474 2.032681 GGCCTTGTTCTCCGCAGT 59.967 61.111 0.00 0.00 0.00 4.40
3151 5006 4.557554 CGCCATGGTGGAGCATAA 57.442 55.556 18.06 0.00 40.96 1.90
3165 5020 1.133823 AGCATAATGATTCCGCCACCA 60.134 47.619 0.00 0.00 0.00 4.17
3171 5026 4.715523 ATTCCGCCACCACCACCG 62.716 66.667 0.00 0.00 0.00 4.94
3220 5075 1.079750 GAGGAACCTCGTCCACTGC 60.080 63.158 5.06 0.00 40.48 4.40
3221 5076 2.047179 GGAACCTCGTCCACTGCC 60.047 66.667 0.00 0.00 37.65 4.85
3222 5077 2.432628 GAACCTCGTCCACTGCCG 60.433 66.667 0.00 0.00 0.00 5.69
3223 5078 3.934391 GAACCTCGTCCACTGCCGG 62.934 68.421 0.00 0.00 0.00 6.13
3239 5094 3.439540 GGCGCCGATGGAAAGCAA 61.440 61.111 12.58 0.00 0.00 3.91
3240 5095 2.566010 GCGCCGATGGAAAGCAAA 59.434 55.556 0.00 0.00 0.00 3.68
3241 5096 1.801512 GCGCCGATGGAAAGCAAAC 60.802 57.895 0.00 0.00 0.00 2.93
3242 5097 1.578926 CGCCGATGGAAAGCAAACA 59.421 52.632 0.00 0.00 0.00 2.83
3243 5098 0.454957 CGCCGATGGAAAGCAAACAG 60.455 55.000 0.00 0.00 0.00 3.16
3244 5099 0.881118 GCCGATGGAAAGCAAACAGA 59.119 50.000 0.00 0.00 0.00 3.41
3245 5100 1.269448 GCCGATGGAAAGCAAACAGAA 59.731 47.619 0.00 0.00 0.00 3.02
3246 5101 2.288152 GCCGATGGAAAGCAAACAGAAA 60.288 45.455 0.00 0.00 0.00 2.52
3247 5102 3.308530 CCGATGGAAAGCAAACAGAAAC 58.691 45.455 0.00 0.00 0.00 2.78
3248 5103 3.308530 CGATGGAAAGCAAACAGAAACC 58.691 45.455 0.00 0.00 0.00 3.27
3249 5104 2.861462 TGGAAAGCAAACAGAAACCG 57.139 45.000 0.00 0.00 0.00 4.44
3250 5105 2.096248 TGGAAAGCAAACAGAAACCGT 58.904 42.857 0.00 0.00 0.00 4.83
3251 5106 3.280295 TGGAAAGCAAACAGAAACCGTA 58.720 40.909 0.00 0.00 0.00 4.02
3252 5107 3.886505 TGGAAAGCAAACAGAAACCGTAT 59.113 39.130 0.00 0.00 0.00 3.06
3256 5111 1.465187 GCAAACAGAAACCGTATCCGC 60.465 52.381 0.00 0.00 0.00 5.54
3289 5144 4.918129 CATTGCCGCTGCCGATGC 62.918 66.667 0.00 0.00 36.33 3.91
3301 5156 3.723172 CGATGCGGATGGAACCAG 58.277 61.111 0.00 0.00 0.00 4.00
3302 5157 1.143838 CGATGCGGATGGAACCAGA 59.856 57.895 0.00 0.00 0.00 3.86
3303 5158 0.461870 CGATGCGGATGGAACCAGAA 60.462 55.000 0.00 0.00 0.00 3.02
3306 5161 2.106683 GCGGATGGAACCAGAACCG 61.107 63.158 22.02 22.02 40.79 4.44
3307 5162 1.449601 CGGATGGAACCAGAACCGG 60.450 63.158 20.12 0.00 37.39 5.28
3310 5165 1.271707 GGATGGAACCAGAACCGGAAA 60.272 52.381 9.46 0.00 0.00 3.13
3311 5166 2.620627 GGATGGAACCAGAACCGGAAAT 60.621 50.000 9.46 0.00 0.00 2.17
3394 5255 5.999044 ACTGATTGCTCTCTATCATTTGGT 58.001 37.500 0.00 0.00 34.77 3.67
3423 5284 2.917713 TTTGGTATCCACTGGGCATT 57.082 45.000 0.00 0.00 30.78 3.56
3449 5310 6.935771 GGCATGATAAAGTTCTCTCATCATCT 59.064 38.462 0.00 0.00 34.84 2.90
3455 5316 9.985318 GATAAAGTTCTCTCATCATCTTTGTTG 57.015 33.333 0.00 0.00 0.00 3.33
3579 5441 0.464554 GCCTCCTCCCGATTTCCTTG 60.465 60.000 0.00 0.00 0.00 3.61
3745 5609 7.978982 TGTACTAAAGTATCGGAGAGTTGTAC 58.021 38.462 11.15 11.15 43.63 2.90
3755 5619 2.924290 GGAGAGTTGTACTAAAGCTGCG 59.076 50.000 0.00 0.00 0.00 5.18
4051 5915 5.886960 AGACATCTTGCATTCCTTTGTAC 57.113 39.130 0.00 0.00 0.00 2.90
4075 5939 4.518590 TGCTGTTTTAAGAAGCTGTGCATA 59.481 37.500 0.00 0.00 37.82 3.14
4091 5972 4.468153 TGTGCATATCTAGGTACCACAACA 59.532 41.667 15.94 2.50 0.00 3.33
4126 6007 7.385267 ACATTGCATACAATTCCTTTGCTTAA 58.615 30.769 0.00 0.00 44.21 1.85
4154 6035 9.768215 AGAAGTTGAATCCTTTTTCCCATATAA 57.232 29.630 0.00 0.00 0.00 0.98
4156 6037 9.547279 AAGTTGAATCCTTTTTCCCATATAAGT 57.453 29.630 0.00 0.00 0.00 2.24
4198 6079 6.998802 ACTGTTAGAGAAACTGCTGAGTTAT 58.001 36.000 0.00 0.00 41.87 1.89
4199 6080 8.123639 ACTGTTAGAGAAACTGCTGAGTTATA 57.876 34.615 0.00 0.00 41.87 0.98
4200 6081 8.754080 ACTGTTAGAGAAACTGCTGAGTTATAT 58.246 33.333 0.00 0.00 41.87 0.86
4208 6089 6.589830 AACTGCTGAGTTATATTAACTGCG 57.410 37.500 4.73 3.59 40.85 5.18
4216 6097 6.816640 TGAGTTATATTAACTGCGCAAACTCT 59.183 34.615 31.32 14.72 41.22 3.24
4258 6139 5.344933 ACAAACTCGTTTTCTCTTTGTTTGC 59.655 36.000 13.33 0.00 43.44 3.68
4291 6172 8.352942 TGTTTGTAATTGTATGTGTGCATGTTA 58.647 29.630 0.00 0.00 36.58 2.41
4293 6174 9.566530 TTTGTAATTGTATGTGTGCATGTTATC 57.433 29.630 0.00 0.00 36.58 1.75
4335 6216 2.263077 CTCGATGCGGCTGTATTATCC 58.737 52.381 0.00 0.00 0.00 2.59
4341 6222 1.734465 GCGGCTGTATTATCCTGATGC 59.266 52.381 0.00 0.00 0.00 3.91
4344 6225 2.996621 GGCTGTATTATCCTGATGCGAC 59.003 50.000 0.00 0.00 0.00 5.19
4347 6228 4.738124 CTGTATTATCCTGATGCGACGAT 58.262 43.478 0.00 0.00 0.00 3.73
4350 6231 5.633601 TGTATTATCCTGATGCGACGATTTC 59.366 40.000 0.00 0.00 0.00 2.17
4351 6232 2.602257 ATCCTGATGCGACGATTTCA 57.398 45.000 0.00 0.00 0.00 2.69
4352 6233 1.926561 TCCTGATGCGACGATTTCAG 58.073 50.000 0.00 7.07 36.26 3.02
4353 6234 1.204704 TCCTGATGCGACGATTTCAGT 59.795 47.619 16.05 0.00 35.01 3.41
4354 6235 1.590238 CCTGATGCGACGATTTCAGTC 59.410 52.381 16.05 0.00 35.01 3.51
4357 6238 3.261580 TGATGCGACGATTTCAGTCATT 58.738 40.909 0.00 0.00 38.46 2.57
4358 6239 3.684305 TGATGCGACGATTTCAGTCATTT 59.316 39.130 0.00 0.00 38.46 2.32
4359 6240 4.154015 TGATGCGACGATTTCAGTCATTTT 59.846 37.500 0.00 0.00 38.46 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.710724 GAAGAACGGACGCCACAGGT 62.711 60.000 0.00 0.00 0.00 4.00
581 588 4.551603 GCTGCTTAGCTACATCAAACATCG 60.552 45.833 5.60 0.00 0.00 3.84
819 826 5.945784 GGTGGGCTATTATTATGCATGAAGA 59.054 40.000 10.16 0.00 0.00 2.87
865 872 6.780457 AATTATGGACCCTCTGTTCATTTG 57.220 37.500 0.00 0.00 40.50 2.32
878 885 7.118390 CCGATTGATTCACTCTAATTATGGACC 59.882 40.741 2.96 0.00 0.00 4.46
903 910 0.550914 TGTATCCTTCCCATGGCACC 59.449 55.000 6.09 0.00 0.00 5.01
941 948 6.978659 TCATGGTCTAGTAAATTCTGCTAACG 59.021 38.462 0.00 0.00 0.00 3.18
996 1003 5.560724 TCATAGGCAATTAAGCTCATACCC 58.439 41.667 0.00 0.00 34.17 3.69
1144 2855 0.249489 GCTGTATGCCGACGAATCCT 60.249 55.000 0.00 0.00 35.15 3.24
1440 3151 1.597854 CAAAGCTCTGTCGCCACCA 60.598 57.895 0.00 0.00 0.00 4.17
1997 3756 0.179000 GTGCATCCAGGTAGACCCAG 59.821 60.000 0.00 0.00 36.42 4.45
2134 3893 3.567797 GCTCGGCGCCATGAGAAC 61.568 66.667 28.92 12.76 34.04 3.01
2157 3925 1.600107 GGTGCCCGACCACATTCTA 59.400 57.895 7.53 0.00 45.34 2.10
2215 3983 1.807165 CTCTCCCGCACATGTCACG 60.807 63.158 10.19 10.19 0.00 4.35
2241 4018 4.199002 ACCCTCTTCCAATCCAACTTTT 57.801 40.909 0.00 0.00 0.00 2.27
2245 4022 2.171003 CCAACCCTCTTCCAATCCAAC 58.829 52.381 0.00 0.00 0.00 3.77
2271 4048 2.433318 GACTCAGAGTGCCGGTGC 60.433 66.667 8.15 0.00 38.26 5.01
2296 4073 7.336427 CCTCTTGACATCTTCTGAAAGCTTAAT 59.664 37.037 0.00 0.00 32.18 1.40
2374 4157 0.676184 TATGCAGCCTCGTCATCCTC 59.324 55.000 0.00 0.00 0.00 3.71
2382 4174 2.174363 TCATGGAATATGCAGCCTCG 57.826 50.000 0.00 0.00 0.00 4.63
2412 4204 1.002134 CGCCTGACCCCAGAATGTT 60.002 57.895 0.00 0.00 43.02 2.71
2472 4270 0.598065 GAAACTCACGGCCAAATGCT 59.402 50.000 2.24 0.00 40.92 3.79
2661 4474 4.147321 ACTCCTTGGTTACTTCGTACAGA 58.853 43.478 0.00 0.00 0.00 3.41
3015 4846 1.142667 TGTTCTGCCAGAATCCACACA 59.857 47.619 10.87 0.15 36.50 3.72
3151 5006 1.378514 GTGGTGGTGGCGGAATCAT 60.379 57.895 0.00 0.00 0.00 2.45
3222 5077 2.988688 TTTGCTTTCCATCGGCGCC 61.989 57.895 19.07 19.07 0.00 6.53
3223 5078 1.801512 GTTTGCTTTCCATCGGCGC 60.802 57.895 0.00 0.00 0.00 6.53
3224 5079 0.454957 CTGTTTGCTTTCCATCGGCG 60.455 55.000 0.00 0.00 0.00 6.46
3225 5080 0.881118 TCTGTTTGCTTTCCATCGGC 59.119 50.000 0.00 0.00 0.00 5.54
3226 5081 3.308530 GTTTCTGTTTGCTTTCCATCGG 58.691 45.455 0.00 0.00 0.00 4.18
3227 5082 3.308530 GGTTTCTGTTTGCTTTCCATCG 58.691 45.455 0.00 0.00 0.00 3.84
3228 5083 3.243401 ACGGTTTCTGTTTGCTTTCCATC 60.243 43.478 0.00 0.00 0.00 3.51
3229 5084 2.693074 ACGGTTTCTGTTTGCTTTCCAT 59.307 40.909 0.00 0.00 0.00 3.41
3230 5085 2.096248 ACGGTTTCTGTTTGCTTTCCA 58.904 42.857 0.00 0.00 0.00 3.53
3231 5086 2.863401 ACGGTTTCTGTTTGCTTTCC 57.137 45.000 0.00 0.00 0.00 3.13
3232 5087 4.473199 GGATACGGTTTCTGTTTGCTTTC 58.527 43.478 0.00 0.00 0.00 2.62
3233 5088 4.499037 GGATACGGTTTCTGTTTGCTTT 57.501 40.909 0.00 0.00 0.00 3.51
3289 5144 1.449601 CCGGTTCTGGTTCCATCCG 60.450 63.158 16.70 16.70 38.05 4.18
3290 5145 0.326927 TTCCGGTTCTGGTTCCATCC 59.673 55.000 0.00 0.00 0.00 3.51
3291 5146 2.194201 TTTCCGGTTCTGGTTCCATC 57.806 50.000 0.00 0.00 0.00 3.51
3294 5149 2.626266 ACAAATTTCCGGTTCTGGTTCC 59.374 45.455 0.00 0.00 0.00 3.62
3306 5161 0.460109 GCCATGGCGGACAAATTTCC 60.460 55.000 23.48 0.00 36.56 3.13
3307 5162 0.460109 GGCCATGGCGGACAAATTTC 60.460 55.000 29.90 8.58 45.64 2.17
3322 5183 4.147449 CCTCTCACGATGCGGCCA 62.147 66.667 2.24 0.00 0.00 5.36
3423 5284 5.993055 TGATGAGAGAACTTTATCATGCCA 58.007 37.500 0.00 0.00 32.68 4.92
3507 5369 9.127277 AGCAAACTGTGTCTTTAAAACCTTATA 57.873 29.630 0.00 0.00 0.00 0.98
3508 5370 8.007405 AGCAAACTGTGTCTTTAAAACCTTAT 57.993 30.769 0.00 0.00 0.00 1.73
3579 5441 6.017852 GCTCAAGGTGGACTTTATTAGCATAC 60.018 42.308 0.00 0.00 37.29 2.39
3681 5544 3.696051 AGCTGCGACAATTAACATGGATT 59.304 39.130 0.00 0.00 0.00 3.01
3692 5555 2.494059 AGTTGTACAAGCTGCGACAAT 58.506 42.857 8.98 3.84 31.83 2.71
3745 5609 5.753438 TCCATATTACTTGTCGCAGCTTTAG 59.247 40.000 0.00 0.00 0.00 1.85
3755 5619 6.672266 TCCCTCTGATCCATATTACTTGTC 57.328 41.667 0.00 0.00 0.00 3.18
3866 5730 4.452733 GGCTTGGGGTCCTCGACG 62.453 72.222 0.00 0.00 32.65 5.12
4051 5915 3.243168 TGCACAGCTTCTTAAAACAGCAG 60.243 43.478 0.00 0.00 35.88 4.24
4075 5939 4.021229 TGACGATGTTGTGGTACCTAGAT 58.979 43.478 14.36 2.63 0.00 1.98
4091 5972 5.816449 TTGTATGCAATGTTGATGACGAT 57.184 34.783 0.00 0.00 0.00 3.73
4126 6007 5.208121 TGGGAAAAAGGATTCAACTTCTGT 58.792 37.500 0.00 0.00 0.00 3.41
4175 6056 9.593134 AATATAACTCAGCAGTTTCTCTAACAG 57.407 33.333 0.00 0.00 40.16 3.16
4198 6079 5.401079 GCAAAAAGAGTTTGCGCAGTTAATA 59.599 36.000 11.31 0.00 44.13 0.98
4199 6080 4.209080 GCAAAAAGAGTTTGCGCAGTTAAT 59.791 37.500 11.31 0.00 44.13 1.40
4200 6081 3.549873 GCAAAAAGAGTTTGCGCAGTTAA 59.450 39.130 11.31 0.00 44.13 2.01
4216 6097 0.968405 GTGAGGAGGCATGGCAAAAA 59.032 50.000 22.64 0.00 0.00 1.94
4226 6107 1.594331 AAACGAGTTTGTGAGGAGGC 58.406 50.000 0.00 0.00 0.00 4.70
4258 6139 6.917477 ACACATACAATTACAAACAAGTGCAG 59.083 34.615 0.00 0.00 0.00 4.41
4291 6172 2.215451 AAACCCGGCCTCTGCATGAT 62.215 55.000 0.00 0.00 40.13 2.45
4293 6174 1.978617 AAAACCCGGCCTCTGCATG 60.979 57.895 0.00 0.00 40.13 4.06
4303 6184 0.725117 GCATCGAGTACAAAACCCGG 59.275 55.000 0.00 0.00 0.00 5.73
4319 6200 3.603532 CATCAGGATAATACAGCCGCAT 58.396 45.455 0.00 0.00 37.96 4.73
4320 6201 2.871637 GCATCAGGATAATACAGCCGCA 60.872 50.000 0.00 0.00 37.96 5.69
4321 6202 1.734465 GCATCAGGATAATACAGCCGC 59.266 52.381 0.00 0.00 37.96 6.53
4322 6203 1.995484 CGCATCAGGATAATACAGCCG 59.005 52.381 0.00 0.00 37.96 5.52
4335 6216 2.262211 TGACTGAAATCGTCGCATCAG 58.738 47.619 15.61 15.61 43.79 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.