Multiple sequence alignment - TraesCS2D01G468500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G468500 chr2D 100.000 3560 0 0 1 3560 573850913 573854472 0.000000e+00 6575.0
1 TraesCS2D01G468500 chr2D 86.896 786 99 2 1789 2570 574346325 574345540 0.000000e+00 878.0
2 TraesCS2D01G468500 chr2A 95.312 2624 102 15 1 2621 712316271 712318876 0.000000e+00 4145.0
3 TraesCS2D01G468500 chr2A 87.047 772 100 0 1789 2560 712707276 712706505 0.000000e+00 872.0
4 TraesCS2D01G468500 chr2A 85.072 690 95 6 1878 2560 712702485 712701797 0.000000e+00 697.0
5 TraesCS2D01G468500 chr2A 86.905 336 19 10 2671 2982 712318876 712319210 1.570000e-93 353.0
6 TraesCS2D01G468500 chr2B 92.244 2888 159 35 1 2852 689713213 689716071 0.000000e+00 4032.0
7 TraesCS2D01G468500 chr2B 87.023 786 97 3 1789 2570 690211373 690210589 0.000000e+00 881.0
8 TraesCS2D01G468500 chr2B 88.811 286 7 8 3009 3274 689716115 689716395 9.530000e-86 327.0
9 TraesCS2D01G468500 chr5D 84.553 738 114 0 1818 2555 519545809 519546546 0.000000e+00 732.0
10 TraesCS2D01G468500 chr5D 88.832 197 20 2 1526 1721 519545548 519545743 1.280000e-59 241.0
11 TraesCS2D01G468500 chr5B 84.438 739 115 0 1817 2555 654366431 654367169 0.000000e+00 728.0
12 TraesCS2D01G468500 chr5B 88.832 197 22 0 1525 1721 654366169 654366365 3.550000e-60 243.0
13 TraesCS2D01G468500 chr5A 88.095 210 22 2 1503 1712 646058389 646058595 2.740000e-61 246.0
14 TraesCS2D01G468500 chr7D 85.000 60 9 0 2260 2319 514093511 514093570 1.070000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G468500 chr2D 573850913 573854472 3559 False 6575.0 6575 100.0000 1 3560 1 chr2D.!!$F1 3559
1 TraesCS2D01G468500 chr2D 574345540 574346325 785 True 878.0 878 86.8960 1789 2570 1 chr2D.!!$R1 781
2 TraesCS2D01G468500 chr2A 712316271 712319210 2939 False 2249.0 4145 91.1085 1 2982 2 chr2A.!!$F1 2981
3 TraesCS2D01G468500 chr2A 712706505 712707276 771 True 872.0 872 87.0470 1789 2560 1 chr2A.!!$R2 771
4 TraesCS2D01G468500 chr2A 712701797 712702485 688 True 697.0 697 85.0720 1878 2560 1 chr2A.!!$R1 682
5 TraesCS2D01G468500 chr2B 689713213 689716395 3182 False 2179.5 4032 90.5275 1 3274 2 chr2B.!!$F1 3273
6 TraesCS2D01G468500 chr2B 690210589 690211373 784 True 881.0 881 87.0230 1789 2570 1 chr2B.!!$R1 781
7 TraesCS2D01G468500 chr5D 519545548 519546546 998 False 486.5 732 86.6925 1526 2555 2 chr5D.!!$F1 1029
8 TraesCS2D01G468500 chr5B 654366169 654367169 1000 False 485.5 728 86.6350 1525 2555 2 chr5B.!!$F1 1030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 995 0.038599 TGGCTCCATCACTGCATTGT 59.961 50.0 3.77 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2874 2952 1.01613 ATGCGTCACTACAGTGCAGC 61.016 55.0 16.6 16.6 45.25 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.095440 ACACAGTTAGCACACTCAAGAAATTT 59.905 34.615 0.00 0.00 0.00 1.82
113 114 1.135094 CCCTGGTCATGGAGTGCTAT 58.865 55.000 0.00 0.00 0.00 2.97
128 129 9.809096 ATGGAGTGCTATATAGATAATCAAACG 57.191 33.333 14.16 0.00 0.00 3.60
134 135 8.812972 TGCTATATAGATAATCAAACGAGGGTT 58.187 33.333 14.16 0.00 38.22 4.11
138 139 9.712305 ATATAGATAATCAAACGAGGGTTCAAG 57.288 33.333 0.00 0.00 34.62 3.02
148 149 2.087646 GAGGGTTCAAGGCATCAGTTC 58.912 52.381 0.00 0.00 0.00 3.01
149 150 1.177401 GGGTTCAAGGCATCAGTTCC 58.823 55.000 0.00 0.00 0.00 3.62
162 163 6.064717 GGCATCAGTTCCCTATTATGTTTCT 58.935 40.000 0.00 0.00 0.00 2.52
190 191 5.419760 TGACTATGCAGTAAGTAGTAGCG 57.580 43.478 0.00 0.00 34.21 4.26
291 292 7.230108 AGTGATGATGAAGCTTCTCTTGAAAAA 59.770 33.333 26.09 3.93 34.56 1.94
295 296 8.627208 TGATGAAGCTTCTCTTGAAAAACTAT 57.373 30.769 26.09 7.34 34.56 2.12
368 369 9.606631 GAATATCAAAGTAGAATTGACCTGACT 57.393 33.333 0.00 0.00 39.43 3.41
569 570 5.945155 TCTTACAGTTTGGTTTGTTGTCAC 58.055 37.500 0.00 0.00 0.00 3.67
689 692 3.366679 GGCAACTCATGGACATTCAACTG 60.367 47.826 0.00 0.00 0.00 3.16
707 741 7.730364 TCAACTGGTCTTCTCAATTTCTTAC 57.270 36.000 0.00 0.00 0.00 2.34
836 871 9.927668 TTTCGCAATTGAGATGATATCACTATA 57.072 29.630 12.87 0.54 0.00 1.31
877 912 2.012937 TGTCGGTGTCGTGAACTTTT 57.987 45.000 0.00 0.00 37.69 2.27
896 931 9.631639 GAACTTTTATGTGTTAAATTGTTGCAC 57.368 29.630 0.00 0.00 32.18 4.57
906 941 9.296400 GTGTTAAATTGTTGCACTAGAGAAAAA 57.704 29.630 0.00 0.00 0.00 1.94
957 995 0.038599 TGGCTCCATCACTGCATTGT 59.961 50.000 3.77 0.00 0.00 2.71
980 1018 1.255667 GGTCACGGGTGAGGAGCTAA 61.256 60.000 0.94 0.00 40.75 3.09
1015 1053 2.257409 GATCATGGAGGTGTGGCCGT 62.257 60.000 0.00 0.00 43.70 5.68
1038 1076 0.320683 CGCTGGTTGTCATCCTCACA 60.321 55.000 1.67 0.00 0.00 3.58
1277 1315 2.030628 TGTCACGCTCGAACTATGTTGA 60.031 45.455 0.00 0.00 0.00 3.18
1628 1666 2.480555 GCCGGACAGAACAATGCG 59.519 61.111 5.05 0.00 0.00 4.73
1717 1755 1.343478 CCTCCCCACTGTGAGTATCCT 60.343 57.143 9.86 0.00 0.00 3.24
1738 1776 7.372451 TCCTTCCGATTTTGTTACACATAAG 57.628 36.000 0.00 0.00 0.00 1.73
1740 1778 5.554822 TCCGATTTTGTTACACATAAGCC 57.445 39.130 0.00 0.00 0.00 4.35
1770 1808 2.297315 TCTTGCACTCGATCACTTCACT 59.703 45.455 0.00 0.00 0.00 3.41
1811 1849 4.332543 TGACGATCCACATGTCTAAATTGC 59.667 41.667 0.00 0.00 33.81 3.56
1868 1906 3.047280 GGTGGTGCGCGACATCAA 61.047 61.111 12.10 0.00 42.36 2.57
2241 2279 0.119358 ACTCCCCTACCAAGAGCCTT 59.881 55.000 0.00 0.00 0.00 4.35
2357 2402 3.771160 GCACGTCTCCGGGGTCAT 61.771 66.667 0.00 0.00 38.16 3.06
2584 2633 3.960102 GGCCAATTTGATTCTGGTGGATA 59.040 43.478 0.00 0.00 32.46 2.59
2755 2817 1.067142 CGGAGTACTTGCCTAGTTGCA 60.067 52.381 0.00 0.00 38.33 4.08
2790 2852 0.036952 ATCGTCTGACAAGTGGGCTG 60.037 55.000 8.73 0.00 0.00 4.85
2791 2853 1.669115 CGTCTGACAAGTGGGCTGG 60.669 63.158 8.73 0.00 0.00 4.85
2793 2855 2.674380 CTGACAAGTGGGCTGGGC 60.674 66.667 0.00 0.00 0.00 5.36
2794 2856 3.177884 TGACAAGTGGGCTGGGCT 61.178 61.111 0.00 0.00 0.00 5.19
2797 2859 2.360852 CAAGTGGGCTGGGCTCTG 60.361 66.667 0.00 0.00 0.00 3.35
2798 2860 2.856000 AAGTGGGCTGGGCTCTGT 60.856 61.111 0.00 0.00 0.00 3.41
2799 2861 3.201707 AAGTGGGCTGGGCTCTGTG 62.202 63.158 0.00 0.00 0.00 3.66
2800 2862 3.958860 GTGGGCTGGGCTCTGTGT 61.959 66.667 0.00 0.00 0.00 3.72
2819 2897 3.000041 TGTTTATGTGGACGATCAGTGC 59.000 45.455 0.00 0.00 41.99 4.40
2854 2932 1.136141 GTGTGCTCTGTGCTCGAAATG 60.136 52.381 3.20 0.00 43.37 2.32
2874 2952 3.804036 TGGGGAATCTGTTATTGTAGCG 58.196 45.455 0.00 0.00 0.00 4.26
2899 2977 0.179100 CTGTAGTGACGCATCCTGGG 60.179 60.000 0.00 0.00 36.28 4.45
2950 3028 1.730451 GCTACCTCGAGCCCTCAGAC 61.730 65.000 6.99 0.00 36.38 3.51
2984 3062 3.360249 GCCATGCCAAGTCAACATATC 57.640 47.619 0.00 0.00 0.00 1.63
2985 3063 2.035066 GCCATGCCAAGTCAACATATCC 59.965 50.000 0.00 0.00 0.00 2.59
2986 3064 2.291465 CCATGCCAAGTCAACATATCCG 59.709 50.000 0.00 0.00 0.00 4.18
2987 3065 2.036958 TGCCAAGTCAACATATCCGG 57.963 50.000 0.00 0.00 0.00 5.14
2988 3066 1.308998 GCCAAGTCAACATATCCGGG 58.691 55.000 0.00 0.00 0.00 5.73
2989 3067 1.408266 GCCAAGTCAACATATCCGGGT 60.408 52.381 0.00 0.00 0.00 5.28
2990 3068 2.158871 GCCAAGTCAACATATCCGGGTA 60.159 50.000 0.00 0.00 0.00 3.69
2991 3069 3.463944 CCAAGTCAACATATCCGGGTAC 58.536 50.000 0.00 0.00 0.00 3.34
2992 3070 3.118555 CCAAGTCAACATATCCGGGTACA 60.119 47.826 0.00 0.00 0.00 2.90
2993 3071 4.119862 CAAGTCAACATATCCGGGTACAG 58.880 47.826 0.00 0.00 0.00 2.74
3003 3081 2.840974 CGGGTACAGGAAGTGCAAG 58.159 57.895 0.00 0.00 34.11 4.01
3004 3082 0.034896 CGGGTACAGGAAGTGCAAGT 59.965 55.000 0.00 0.00 34.11 3.16
3005 3083 1.274167 CGGGTACAGGAAGTGCAAGTA 59.726 52.381 0.00 0.00 34.11 2.24
3006 3084 2.674177 CGGGTACAGGAAGTGCAAGTAG 60.674 54.545 0.00 0.00 34.11 2.57
3007 3085 2.565834 GGGTACAGGAAGTGCAAGTAGA 59.434 50.000 0.00 0.00 34.11 2.59
3008 3086 3.007614 GGGTACAGGAAGTGCAAGTAGAA 59.992 47.826 0.00 0.00 34.11 2.10
3009 3087 4.323562 GGGTACAGGAAGTGCAAGTAGAAT 60.324 45.833 0.00 0.00 34.11 2.40
3010 3088 5.105064 GGGTACAGGAAGTGCAAGTAGAATA 60.105 44.000 0.00 0.00 34.11 1.75
3011 3089 6.408206 GGGTACAGGAAGTGCAAGTAGAATAT 60.408 42.308 0.00 0.00 34.11 1.28
3017 3095 5.447818 GGAAGTGCAAGTAGAATATGTGTGC 60.448 44.000 0.00 0.00 0.00 4.57
3024 3102 5.551760 AGTAGAATATGTGTGCAACTTGC 57.448 39.130 6.82 6.82 45.29 4.01
3045 3123 5.073428 TGCATACCACTTTCAACCACAATA 58.927 37.500 0.00 0.00 0.00 1.90
3077 3155 0.178998 AGCATGCCACTGATGATCCC 60.179 55.000 15.66 0.00 0.00 3.85
3139 3217 7.386573 TGCAGTGATCGAACAGAAAAGTTAATA 59.613 33.333 0.00 0.00 0.00 0.98
3140 3218 8.227791 GCAGTGATCGAACAGAAAAGTTAATAA 58.772 33.333 0.00 0.00 0.00 1.40
3170 3248 9.334947 GACACTGGAGTATTGTATACTGTAGTA 57.665 37.037 4.17 0.00 34.67 1.82
3204 3302 9.274206 GAGGTTTTATCATTACTACTTGGGATC 57.726 37.037 0.00 0.00 0.00 3.36
3274 3372 3.066760 GGGAATGCCTTTTCTGTAATCCG 59.933 47.826 0.00 0.00 0.00 4.18
3275 3373 3.066760 GGAATGCCTTTTCTGTAATCCGG 59.933 47.826 0.00 0.00 0.00 5.14
3276 3374 2.871096 TGCCTTTTCTGTAATCCGGT 57.129 45.000 0.00 0.00 0.00 5.28
3277 3375 3.149005 TGCCTTTTCTGTAATCCGGTT 57.851 42.857 0.00 0.00 0.00 4.44
3278 3376 2.817258 TGCCTTTTCTGTAATCCGGTTG 59.183 45.455 0.00 0.00 0.00 3.77
3279 3377 2.817844 GCCTTTTCTGTAATCCGGTTGT 59.182 45.455 0.00 0.00 0.00 3.32
3280 3378 3.365969 GCCTTTTCTGTAATCCGGTTGTG 60.366 47.826 0.00 0.00 0.00 3.33
3281 3379 3.365969 CCTTTTCTGTAATCCGGTTGTGC 60.366 47.826 0.00 0.00 0.00 4.57
3282 3380 1.816074 TTCTGTAATCCGGTTGTGCC 58.184 50.000 0.00 0.00 0.00 5.01
3283 3381 0.035820 TCTGTAATCCGGTTGTGCCC 60.036 55.000 0.00 0.00 0.00 5.36
3284 3382 0.322098 CTGTAATCCGGTTGTGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
3285 3383 0.110678 TGTAATCCGGTTGTGCCCAA 59.889 50.000 0.00 0.00 0.00 4.12
3286 3384 0.808755 GTAATCCGGTTGTGCCCAAG 59.191 55.000 0.00 0.00 0.00 3.61
3287 3385 0.322997 TAATCCGGTTGTGCCCAAGG 60.323 55.000 0.00 0.00 0.00 3.61
3288 3386 2.366153 AATCCGGTTGTGCCCAAGGT 62.366 55.000 0.00 0.00 0.00 3.50
3289 3387 1.493854 ATCCGGTTGTGCCCAAGGTA 61.494 55.000 0.00 0.00 0.00 3.08
3290 3388 1.228306 CCGGTTGTGCCCAAGGTAA 60.228 57.895 0.00 0.00 0.00 2.85
3291 3389 0.824182 CCGGTTGTGCCCAAGGTAAA 60.824 55.000 0.00 0.00 0.00 2.01
3292 3390 0.312729 CGGTTGTGCCCAAGGTAAAC 59.687 55.000 0.00 0.00 0.00 2.01
3293 3391 0.677288 GGTTGTGCCCAAGGTAAACC 59.323 55.000 0.00 0.00 0.00 3.27
3294 3392 0.677288 GTTGTGCCCAAGGTAAACCC 59.323 55.000 0.00 0.00 36.42 4.11
3295 3393 0.261991 TTGTGCCCAAGGTAAACCCA 59.738 50.000 0.00 0.00 36.42 4.51
3296 3394 0.261991 TGTGCCCAAGGTAAACCCAA 59.738 50.000 0.00 0.00 36.42 4.12
3297 3395 1.133009 TGTGCCCAAGGTAAACCCAAT 60.133 47.619 0.00 0.00 36.42 3.16
3298 3396 2.110188 TGTGCCCAAGGTAAACCCAATA 59.890 45.455 0.00 0.00 36.42 1.90
3299 3397 3.166679 GTGCCCAAGGTAAACCCAATAA 58.833 45.455 0.00 0.00 36.42 1.40
3300 3398 3.579151 GTGCCCAAGGTAAACCCAATAAA 59.421 43.478 0.00 0.00 36.42 1.40
3301 3399 4.224147 GTGCCCAAGGTAAACCCAATAAAT 59.776 41.667 0.00 0.00 36.42 1.40
3302 3400 4.223923 TGCCCAAGGTAAACCCAATAAATG 59.776 41.667 0.00 0.00 36.42 2.32
3303 3401 4.765273 CCCAAGGTAAACCCAATAAATGC 58.235 43.478 0.00 0.00 36.42 3.56
3304 3402 4.429108 CCAAGGTAAACCCAATAAATGCG 58.571 43.478 0.00 0.00 36.42 4.73
3305 3403 4.158764 CCAAGGTAAACCCAATAAATGCGA 59.841 41.667 0.00 0.00 36.42 5.10
3306 3404 5.163457 CCAAGGTAAACCCAATAAATGCGAT 60.163 40.000 0.00 0.00 36.42 4.58
3307 3405 6.337356 CAAGGTAAACCCAATAAATGCGATT 58.663 36.000 0.00 0.00 36.42 3.34
3308 3406 6.144078 AGGTAAACCCAATAAATGCGATTC 57.856 37.500 0.00 0.00 36.42 2.52
3309 3407 5.891551 AGGTAAACCCAATAAATGCGATTCT 59.108 36.000 0.00 0.00 36.42 2.40
3310 3408 6.379988 AGGTAAACCCAATAAATGCGATTCTT 59.620 34.615 0.00 0.00 36.42 2.52
3311 3409 7.558444 AGGTAAACCCAATAAATGCGATTCTTA 59.442 33.333 0.00 0.00 36.42 2.10
3312 3410 8.192110 GGTAAACCCAATAAATGCGATTCTTAA 58.808 33.333 0.00 0.00 0.00 1.85
3313 3411 9.016623 GTAAACCCAATAAATGCGATTCTTAAC 57.983 33.333 0.00 0.00 0.00 2.01
3314 3412 5.816919 ACCCAATAAATGCGATTCTTAACG 58.183 37.500 0.00 0.00 0.00 3.18
3315 3413 5.587043 ACCCAATAAATGCGATTCTTAACGA 59.413 36.000 0.00 0.00 0.00 3.85
3316 3414 6.262273 ACCCAATAAATGCGATTCTTAACGAT 59.738 34.615 0.00 0.00 0.00 3.73
3317 3415 7.442969 ACCCAATAAATGCGATTCTTAACGATA 59.557 33.333 0.00 0.00 0.00 2.92
3318 3416 8.286800 CCCAATAAATGCGATTCTTAACGATAA 58.713 33.333 0.00 0.00 0.00 1.75
3319 3417 9.658475 CCAATAAATGCGATTCTTAACGATAAA 57.342 29.630 0.00 0.00 0.00 1.40
3323 3421 8.993852 AAATGCGATTCTTAACGATAAAGATG 57.006 30.769 0.00 0.00 33.17 2.90
3324 3422 6.525121 TGCGATTCTTAACGATAAAGATGG 57.475 37.500 0.00 0.00 33.17 3.51
3325 3423 5.050363 TGCGATTCTTAACGATAAAGATGGC 60.050 40.000 0.00 0.00 33.17 4.40
3326 3424 5.599715 CGATTCTTAACGATAAAGATGGCG 58.400 41.667 0.00 0.00 33.17 5.69
3327 3425 5.388475 CGATTCTTAACGATAAAGATGGCGG 60.388 44.000 0.00 0.00 33.17 6.13
3328 3426 4.659111 TCTTAACGATAAAGATGGCGGA 57.341 40.909 0.00 0.00 0.00 5.54
3329 3427 4.617959 TCTTAACGATAAAGATGGCGGAG 58.382 43.478 0.00 0.00 0.00 4.63
3330 3428 4.340097 TCTTAACGATAAAGATGGCGGAGA 59.660 41.667 0.00 0.00 0.00 3.71
3331 3429 3.536956 AACGATAAAGATGGCGGAGAA 57.463 42.857 0.00 0.00 0.00 2.87
3332 3430 3.536956 ACGATAAAGATGGCGGAGAAA 57.463 42.857 0.00 0.00 0.00 2.52
3333 3431 3.458189 ACGATAAAGATGGCGGAGAAAG 58.542 45.455 0.00 0.00 0.00 2.62
3334 3432 3.132289 ACGATAAAGATGGCGGAGAAAGA 59.868 43.478 0.00 0.00 0.00 2.52
3335 3433 3.491267 CGATAAAGATGGCGGAGAAAGAC 59.509 47.826 0.00 0.00 0.00 3.01
3336 3434 2.859165 AAAGATGGCGGAGAAAGACA 57.141 45.000 0.00 0.00 0.00 3.41
3337 3435 2.393271 AAGATGGCGGAGAAAGACAG 57.607 50.000 0.00 0.00 0.00 3.51
3338 3436 1.561643 AGATGGCGGAGAAAGACAGA 58.438 50.000 0.00 0.00 0.00 3.41
3339 3437 2.114616 AGATGGCGGAGAAAGACAGAT 58.885 47.619 0.00 0.00 0.00 2.90
3340 3438 2.158986 AGATGGCGGAGAAAGACAGATG 60.159 50.000 0.00 0.00 0.00 2.90
3341 3439 0.391661 TGGCGGAGAAAGACAGATGC 60.392 55.000 0.00 0.00 0.00 3.91
3342 3440 0.107945 GGCGGAGAAAGACAGATGCT 60.108 55.000 0.00 0.00 0.00 3.79
3343 3441 1.137086 GGCGGAGAAAGACAGATGCTA 59.863 52.381 0.00 0.00 0.00 3.49
3344 3442 2.418746 GGCGGAGAAAGACAGATGCTAA 60.419 50.000 0.00 0.00 0.00 3.09
3345 3443 3.462021 GCGGAGAAAGACAGATGCTAAT 58.538 45.455 0.00 0.00 0.00 1.73
3346 3444 3.873952 GCGGAGAAAGACAGATGCTAATT 59.126 43.478 0.00 0.00 0.00 1.40
3347 3445 5.050490 GCGGAGAAAGACAGATGCTAATTA 58.950 41.667 0.00 0.00 0.00 1.40
3348 3446 5.698545 GCGGAGAAAGACAGATGCTAATTAT 59.301 40.000 0.00 0.00 0.00 1.28
3349 3447 6.347240 GCGGAGAAAGACAGATGCTAATTATG 60.347 42.308 0.00 0.00 0.00 1.90
3350 3448 6.703607 CGGAGAAAGACAGATGCTAATTATGT 59.296 38.462 0.00 0.00 0.00 2.29
3351 3449 7.307042 CGGAGAAAGACAGATGCTAATTATGTG 60.307 40.741 0.00 0.00 0.00 3.21
3352 3450 7.256756 AGAAAGACAGATGCTAATTATGTGC 57.743 36.000 0.00 0.00 0.00 4.57
3353 3451 6.825213 AGAAAGACAGATGCTAATTATGTGCA 59.175 34.615 0.88 0.88 41.13 4.57
3354 3452 5.998454 AGACAGATGCTAATTATGTGCAC 57.002 39.130 10.75 10.75 39.63 4.57
3355 3453 5.430886 AGACAGATGCTAATTATGTGCACA 58.569 37.500 24.08 24.08 39.63 4.57
3356 3454 6.060136 AGACAGATGCTAATTATGTGCACAT 58.940 36.000 33.20 33.20 39.63 3.21
3357 3455 6.544931 AGACAGATGCTAATTATGTGCACATT 59.455 34.615 35.45 21.79 39.63 2.71
3358 3456 6.500910 ACAGATGCTAATTATGTGCACATTG 58.499 36.000 35.45 24.24 39.63 2.82
3359 3457 5.918576 CAGATGCTAATTATGTGCACATTGG 59.081 40.000 35.45 21.70 39.63 3.16
3360 3458 5.829391 AGATGCTAATTATGTGCACATTGGA 59.171 36.000 35.45 21.99 39.63 3.53
3361 3459 5.911378 TGCTAATTATGTGCACATTGGAA 57.089 34.783 35.45 24.16 37.76 3.53
3362 3460 6.468333 TGCTAATTATGTGCACATTGGAAT 57.532 33.333 35.45 25.20 37.76 3.01
3363 3461 6.876155 TGCTAATTATGTGCACATTGGAATT 58.124 32.000 35.45 31.33 37.76 2.17
3364 3462 8.005192 TGCTAATTATGTGCACATTGGAATTA 57.995 30.769 35.45 30.87 37.76 1.40
3365 3463 7.920151 TGCTAATTATGTGCACATTGGAATTAC 59.080 33.333 35.45 26.03 37.76 1.89
3366 3464 7.920151 GCTAATTATGTGCACATTGGAATTACA 59.080 33.333 35.45 18.98 37.76 2.41
3367 3465 9.236691 CTAATTATGTGCACATTGGAATTACAC 57.763 33.333 35.45 0.00 37.76 2.90
3368 3466 6.832520 TTATGTGCACATTGGAATTACACT 57.167 33.333 35.45 11.63 37.76 3.55
3369 3467 7.929941 TTATGTGCACATTGGAATTACACTA 57.070 32.000 35.45 11.61 37.76 2.74
3370 3468 5.621197 TGTGCACATTGGAATTACACTAC 57.379 39.130 17.42 0.00 0.00 2.73
3371 3469 5.066593 TGTGCACATTGGAATTACACTACA 58.933 37.500 17.42 0.00 0.00 2.74
3372 3470 5.709631 TGTGCACATTGGAATTACACTACAT 59.290 36.000 17.42 0.00 0.00 2.29
3373 3471 6.881602 TGTGCACATTGGAATTACACTACATA 59.118 34.615 17.42 0.00 0.00 2.29
3374 3472 7.148323 TGTGCACATTGGAATTACACTACATAC 60.148 37.037 17.42 0.00 0.00 2.39
3375 3473 6.881602 TGCACATTGGAATTACACTACATACA 59.118 34.615 0.00 0.00 0.00 2.29
3376 3474 7.555914 TGCACATTGGAATTACACTACATACAT 59.444 33.333 0.00 0.00 0.00 2.29
3377 3475 9.051679 GCACATTGGAATTACACTACATACATA 57.948 33.333 0.00 0.00 0.00 2.29
3406 3504 7.371159 AGAAACTGCTACAGGAAAATAAAAGC 58.629 34.615 0.00 0.00 35.51 3.51
3407 3505 6.648879 AACTGCTACAGGAAAATAAAAGCA 57.351 33.333 0.00 0.00 35.51 3.91
3408 3506 6.648879 ACTGCTACAGGAAAATAAAAGCAA 57.351 33.333 0.00 0.00 37.97 3.91
3409 3507 7.049799 ACTGCTACAGGAAAATAAAAGCAAA 57.950 32.000 0.00 0.00 37.97 3.68
3410 3508 7.147976 ACTGCTACAGGAAAATAAAAGCAAAG 58.852 34.615 0.00 0.00 37.97 2.77
3411 3509 7.014230 ACTGCTACAGGAAAATAAAAGCAAAGA 59.986 33.333 0.00 0.00 37.97 2.52
3412 3510 7.721402 TGCTACAGGAAAATAAAAGCAAAGAA 58.279 30.769 0.00 0.00 35.70 2.52
3413 3511 8.367156 TGCTACAGGAAAATAAAAGCAAAGAAT 58.633 29.630 0.00 0.00 35.70 2.40
3414 3512 8.650714 GCTACAGGAAAATAAAAGCAAAGAATG 58.349 33.333 0.00 0.00 0.00 2.67
3415 3513 9.912634 CTACAGGAAAATAAAAGCAAAGAATGA 57.087 29.630 0.00 0.00 0.00 2.57
3417 3515 9.783081 ACAGGAAAATAAAAGCAAAGAATGATT 57.217 25.926 0.00 0.00 39.93 2.57
3423 3521 9.671279 AAATAAAAGCAAAGAATGATTAAGGGG 57.329 29.630 0.00 0.00 36.42 4.79
3424 3522 5.682234 AAAGCAAAGAATGATTAAGGGGG 57.318 39.130 0.00 0.00 36.42 5.40
3425 3523 4.608170 AGCAAAGAATGATTAAGGGGGA 57.392 40.909 0.00 0.00 0.00 4.81
3426 3524 4.946646 AGCAAAGAATGATTAAGGGGGAA 58.053 39.130 0.00 0.00 0.00 3.97
3427 3525 4.958581 AGCAAAGAATGATTAAGGGGGAAG 59.041 41.667 0.00 0.00 0.00 3.46
3428 3526 4.956075 GCAAAGAATGATTAAGGGGGAAGA 59.044 41.667 0.00 0.00 0.00 2.87
3429 3527 5.163509 GCAAAGAATGATTAAGGGGGAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
3430 3528 6.190587 CAAAGAATGATTAAGGGGGAAGACT 58.809 40.000 0.00 0.00 0.00 3.24
3431 3529 5.379706 AGAATGATTAAGGGGGAAGACTG 57.620 43.478 0.00 0.00 0.00 3.51
3432 3530 5.039645 AGAATGATTAAGGGGGAAGACTGA 58.960 41.667 0.00 0.00 0.00 3.41
3433 3531 5.674035 AGAATGATTAAGGGGGAAGACTGAT 59.326 40.000 0.00 0.00 0.00 2.90
3434 3532 6.161170 AGAATGATTAAGGGGGAAGACTGATT 59.839 38.462 0.00 0.00 0.00 2.57
3435 3533 5.796502 TGATTAAGGGGGAAGACTGATTT 57.203 39.130 0.00 0.00 0.00 2.17
3436 3534 6.152638 TGATTAAGGGGGAAGACTGATTTT 57.847 37.500 0.00 0.00 0.00 1.82
3437 3535 5.951747 TGATTAAGGGGGAAGACTGATTTTG 59.048 40.000 0.00 0.00 0.00 2.44
3438 3536 2.222227 AGGGGGAAGACTGATTTTGC 57.778 50.000 0.00 0.00 0.00 3.68
3439 3537 1.428912 AGGGGGAAGACTGATTTTGCA 59.571 47.619 0.00 0.00 0.00 4.08
3440 3538 2.043526 AGGGGGAAGACTGATTTTGCAT 59.956 45.455 0.00 0.00 0.00 3.96
3441 3539 3.269381 AGGGGGAAGACTGATTTTGCATA 59.731 43.478 0.00 0.00 0.00 3.14
3442 3540 3.633986 GGGGGAAGACTGATTTTGCATAG 59.366 47.826 0.00 0.00 0.00 2.23
3443 3541 4.526970 GGGGAAGACTGATTTTGCATAGA 58.473 43.478 0.00 0.00 0.00 1.98
3444 3542 4.949856 GGGGAAGACTGATTTTGCATAGAA 59.050 41.667 0.00 0.00 0.00 2.10
3445 3543 5.418840 GGGGAAGACTGATTTTGCATAGAAA 59.581 40.000 0.00 0.00 0.00 2.52
3446 3544 6.325596 GGGAAGACTGATTTTGCATAGAAAC 58.674 40.000 0.00 0.00 0.00 2.78
3447 3545 6.071952 GGGAAGACTGATTTTGCATAGAAACA 60.072 38.462 0.00 0.00 0.00 2.83
3448 3546 6.803807 GGAAGACTGATTTTGCATAGAAACAC 59.196 38.462 0.00 0.00 0.00 3.32
3449 3547 6.259550 AGACTGATTTTGCATAGAAACACC 57.740 37.500 0.00 0.00 0.00 4.16
3450 3548 5.046910 ACTGATTTTGCATAGAAACACCG 57.953 39.130 0.00 0.00 0.00 4.94
3451 3549 4.518970 ACTGATTTTGCATAGAAACACCGT 59.481 37.500 0.00 0.00 0.00 4.83
3452 3550 5.703592 ACTGATTTTGCATAGAAACACCGTA 59.296 36.000 0.00 0.00 0.00 4.02
3453 3551 6.128282 ACTGATTTTGCATAGAAACACCGTAG 60.128 38.462 0.00 0.00 0.00 3.51
3454 3552 5.703592 TGATTTTGCATAGAAACACCGTAGT 59.296 36.000 0.00 0.00 0.00 2.73
3455 3553 5.600908 TTTTGCATAGAAACACCGTAGTC 57.399 39.130 0.00 0.00 0.00 2.59
3456 3554 4.530710 TTGCATAGAAACACCGTAGTCT 57.469 40.909 0.00 0.00 0.00 3.24
3457 3555 4.106029 TGCATAGAAACACCGTAGTCTC 57.894 45.455 0.00 0.00 0.00 3.36
3458 3556 3.119245 TGCATAGAAACACCGTAGTCTCC 60.119 47.826 0.00 0.00 0.00 3.71
3459 3557 3.119245 GCATAGAAACACCGTAGTCTCCA 60.119 47.826 0.00 0.00 0.00 3.86
3460 3558 4.441634 GCATAGAAACACCGTAGTCTCCAT 60.442 45.833 0.00 0.00 0.00 3.41
3461 3559 5.661458 CATAGAAACACCGTAGTCTCCATT 58.339 41.667 0.00 0.00 0.00 3.16
3462 3560 4.618920 AGAAACACCGTAGTCTCCATTT 57.381 40.909 0.00 0.00 0.00 2.32
3463 3561 4.969484 AGAAACACCGTAGTCTCCATTTT 58.031 39.130 0.00 0.00 0.00 1.82
3464 3562 5.374071 AGAAACACCGTAGTCTCCATTTTT 58.626 37.500 0.00 0.00 0.00 1.94
3465 3563 5.469084 AGAAACACCGTAGTCTCCATTTTTC 59.531 40.000 0.00 0.00 0.00 2.29
3466 3564 4.618920 ACACCGTAGTCTCCATTTTTCT 57.381 40.909 0.00 0.00 0.00 2.52
3467 3565 5.733620 ACACCGTAGTCTCCATTTTTCTA 57.266 39.130 0.00 0.00 0.00 2.10
3468 3566 6.105397 ACACCGTAGTCTCCATTTTTCTAA 57.895 37.500 0.00 0.00 0.00 2.10
3469 3567 6.527423 ACACCGTAGTCTCCATTTTTCTAAA 58.473 36.000 0.00 0.00 0.00 1.85
3470 3568 6.426025 ACACCGTAGTCTCCATTTTTCTAAAC 59.574 38.462 0.00 0.00 0.00 2.01
3471 3569 6.425721 CACCGTAGTCTCCATTTTTCTAAACA 59.574 38.462 0.00 0.00 0.00 2.83
3472 3570 7.119262 CACCGTAGTCTCCATTTTTCTAAACAT 59.881 37.037 0.00 0.00 0.00 2.71
3473 3571 7.664318 ACCGTAGTCTCCATTTTTCTAAACATT 59.336 33.333 0.00 0.00 0.00 2.71
3474 3572 9.158233 CCGTAGTCTCCATTTTTCTAAACATTA 57.842 33.333 0.00 0.00 0.00 1.90
3500 3598 9.689976 ATAATATCTCATTCTCGTATAGCATGC 57.310 33.333 10.51 10.51 29.81 4.06
3501 3599 4.853924 TCTCATTCTCGTATAGCATGCA 57.146 40.909 21.98 6.36 29.81 3.96
3502 3600 4.550422 TCTCATTCTCGTATAGCATGCAC 58.450 43.478 21.98 8.61 29.81 4.57
3503 3601 4.037923 TCTCATTCTCGTATAGCATGCACA 59.962 41.667 21.98 7.55 29.81 4.57
3504 3602 4.051237 TCATTCTCGTATAGCATGCACAC 58.949 43.478 21.98 12.93 29.81 3.82
3505 3603 3.801114 TTCTCGTATAGCATGCACACT 57.199 42.857 21.98 0.61 0.00 3.55
3506 3604 3.084070 TCTCGTATAGCATGCACACTG 57.916 47.619 21.98 6.69 0.00 3.66
3507 3605 2.130395 CTCGTATAGCATGCACACTGG 58.870 52.381 21.98 4.39 0.00 4.00
3508 3606 1.754226 TCGTATAGCATGCACACTGGA 59.246 47.619 21.98 6.86 0.00 3.86
3509 3607 1.860950 CGTATAGCATGCACACTGGAC 59.139 52.381 21.98 6.64 0.00 4.02
3510 3608 2.481969 CGTATAGCATGCACACTGGACT 60.482 50.000 21.98 0.00 0.00 3.85
3511 3609 2.034104 ATAGCATGCACACTGGACTG 57.966 50.000 21.98 0.00 0.00 3.51
3512 3610 0.975887 TAGCATGCACACTGGACTGA 59.024 50.000 21.98 0.00 0.00 3.41
3513 3611 0.109153 AGCATGCACACTGGACTGAA 59.891 50.000 21.98 0.00 0.00 3.02
3514 3612 0.953727 GCATGCACACTGGACTGAAA 59.046 50.000 14.21 0.00 0.00 2.69
3515 3613 1.542915 GCATGCACACTGGACTGAAAT 59.457 47.619 14.21 0.00 0.00 2.17
3516 3614 2.415090 GCATGCACACTGGACTGAAATC 60.415 50.000 14.21 0.00 0.00 2.17
3517 3615 2.636647 TGCACACTGGACTGAAATCA 57.363 45.000 0.00 0.00 0.00 2.57
3518 3616 3.144657 TGCACACTGGACTGAAATCAT 57.855 42.857 0.00 0.00 0.00 2.45
3519 3617 2.815503 TGCACACTGGACTGAAATCATG 59.184 45.455 0.00 0.00 0.00 3.07
3520 3618 3.076621 GCACACTGGACTGAAATCATGA 58.923 45.455 0.00 0.00 0.00 3.07
3521 3619 3.693085 GCACACTGGACTGAAATCATGAT 59.307 43.478 1.18 1.18 0.00 2.45
3522 3620 4.201891 GCACACTGGACTGAAATCATGATC 60.202 45.833 9.06 0.00 0.00 2.92
3523 3621 4.033702 CACACTGGACTGAAATCATGATCG 59.966 45.833 9.06 0.99 0.00 3.69
3524 3622 4.186926 CACTGGACTGAAATCATGATCGT 58.813 43.478 9.06 4.27 0.00 3.73
3525 3623 4.033702 CACTGGACTGAAATCATGATCGTG 59.966 45.833 9.06 8.74 0.00 4.35
3526 3624 4.186926 CTGGACTGAAATCATGATCGTGT 58.813 43.478 14.52 6.03 0.00 4.49
3527 3625 5.105351 ACTGGACTGAAATCATGATCGTGTA 60.105 40.000 14.52 2.54 0.00 2.90
3528 3626 5.729510 TGGACTGAAATCATGATCGTGTAA 58.270 37.500 14.52 0.00 0.00 2.41
3529 3627 6.169800 TGGACTGAAATCATGATCGTGTAAA 58.830 36.000 14.52 0.00 0.00 2.01
3530 3628 6.823182 TGGACTGAAATCATGATCGTGTAAAT 59.177 34.615 14.52 0.00 0.00 1.40
3531 3629 7.128331 GGACTGAAATCATGATCGTGTAAATG 58.872 38.462 14.52 0.00 0.00 2.32
3532 3630 7.019774 ACTGAAATCATGATCGTGTAAATGG 57.980 36.000 14.52 5.69 0.00 3.16
3533 3631 5.820131 TGAAATCATGATCGTGTAAATGGC 58.180 37.500 14.52 1.05 0.00 4.40
3534 3632 5.356470 TGAAATCATGATCGTGTAAATGGCA 59.644 36.000 14.52 0.00 0.00 4.92
3535 3633 5.833406 AATCATGATCGTGTAAATGGCAA 57.167 34.783 14.52 0.00 0.00 4.52
3536 3634 5.833406 ATCATGATCGTGTAAATGGCAAA 57.167 34.783 14.52 0.00 0.00 3.68
3537 3635 5.233957 TCATGATCGTGTAAATGGCAAAG 57.766 39.130 14.52 0.00 0.00 2.77
3538 3636 4.096231 TCATGATCGTGTAAATGGCAAAGG 59.904 41.667 14.52 0.00 0.00 3.11
3539 3637 3.680490 TGATCGTGTAAATGGCAAAGGA 58.320 40.909 0.00 0.00 0.00 3.36
3540 3638 4.075682 TGATCGTGTAAATGGCAAAGGAA 58.924 39.130 0.00 0.00 0.00 3.36
3541 3639 3.907894 TCGTGTAAATGGCAAAGGAAC 57.092 42.857 0.00 0.00 0.00 3.62
3542 3640 3.215151 TCGTGTAAATGGCAAAGGAACA 58.785 40.909 0.00 0.00 0.00 3.18
3543 3641 3.632604 TCGTGTAAATGGCAAAGGAACAA 59.367 39.130 0.00 0.00 0.00 2.83
3544 3642 4.098044 TCGTGTAAATGGCAAAGGAACAAA 59.902 37.500 0.00 0.00 0.00 2.83
3545 3643 4.987912 CGTGTAAATGGCAAAGGAACAAAT 59.012 37.500 0.00 0.00 0.00 2.32
3546 3644 5.465056 CGTGTAAATGGCAAAGGAACAAATT 59.535 36.000 0.00 0.00 0.00 1.82
3547 3645 6.018343 CGTGTAAATGGCAAAGGAACAAATTT 60.018 34.615 0.00 0.00 0.00 1.82
3548 3646 7.131565 GTGTAAATGGCAAAGGAACAAATTTG 58.868 34.615 16.67 16.67 39.01 2.32
3558 3656 8.992287 CAAAGGAACAAATTTGCAAAATAGAC 57.008 30.769 17.19 6.53 30.37 2.59
3559 3657 8.829612 CAAAGGAACAAATTTGCAAAATAGACT 58.170 29.630 17.19 6.20 30.37 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.484959 GTGCTAACTGTGTTAGCCATTTTATTC 59.515 37.037 28.37 11.62 44.96 1.75
29 30 5.270893 TCTTGAGTGTGCTAACTGTGTTA 57.729 39.130 0.00 0.00 0.00 2.41
90 91 1.490490 GCACTCCATGACCAGGGAATA 59.510 52.381 4.89 0.00 41.16 1.75
113 114 8.148351 CCTTGAACCCTCGTTTGATTATCTATA 58.852 37.037 0.00 0.00 30.30 1.31
128 129 2.087646 GAACTGATGCCTTGAACCCTC 58.912 52.381 0.00 0.00 0.00 4.30
138 139 6.064717 AGAAACATAATAGGGAACTGATGCC 58.935 40.000 0.00 0.00 43.88 4.40
148 149 6.352516 AGTCAGCAAGAGAAACATAATAGGG 58.647 40.000 0.00 0.00 0.00 3.53
149 150 8.986847 CATAGTCAGCAAGAGAAACATAATAGG 58.013 37.037 0.00 0.00 0.00 2.57
162 163 4.808414 ACTTACTGCATAGTCAGCAAGA 57.192 40.909 9.86 0.00 42.17 3.02
291 292 8.939929 CAATATTCGATTGCCTTGTATGATAGT 58.060 33.333 0.00 0.00 0.00 2.12
295 296 5.473162 CCCAATATTCGATTGCCTTGTATGA 59.527 40.000 0.00 0.00 0.00 2.15
368 369 3.507233 CCTATCTCAGCCAAAGCAACAAA 59.493 43.478 0.00 0.00 43.56 2.83
415 416 3.665745 TTACTACGTTTTTCCGCTCCT 57.334 42.857 0.00 0.00 0.00 3.69
544 545 7.466185 CGTGACAACAAACCAAACTGTAAGATA 60.466 37.037 0.00 0.00 37.43 1.98
561 562 3.180891 TCAACATACACCGTGACAACA 57.819 42.857 5.28 0.00 0.00 3.33
569 570 4.991056 CCCTCTTATGATCAACATACACCG 59.009 45.833 0.00 0.00 40.62 4.94
851 886 2.761559 TCACGACACCGACAATGAAAT 58.238 42.857 0.00 0.00 39.50 2.17
877 912 8.840833 TCTCTAGTGCAACAATTTAACACATA 57.159 30.769 0.00 0.00 41.43 2.29
906 941 4.532834 ACATGGGTATGCGGAGTTAATTT 58.467 39.130 0.00 0.00 37.85 1.82
911 946 0.908910 TGACATGGGTATGCGGAGTT 59.091 50.000 0.00 0.00 37.85 3.01
957 995 1.152419 TCCTCACCCGTGACCTCAA 60.152 57.895 0.00 0.00 35.46 3.02
980 1018 4.457603 CCATGATCGACTTAGCTAGCTAGT 59.542 45.833 23.03 21.34 0.00 2.57
1015 1053 2.434185 GATGACAACCAGCGGCGA 60.434 61.111 12.98 0.00 0.00 5.54
1019 1057 0.320683 TGTGAGGATGACAACCAGCG 60.321 55.000 4.37 0.00 30.42 5.18
1038 1076 1.967066 CAGGGAGAGACAACACAGAGT 59.033 52.381 0.00 0.00 0.00 3.24
1080 1118 1.948834 TGTGCCACAGTCACATTCTTG 59.051 47.619 0.00 0.00 39.29 3.02
1086 1124 1.484653 AGTAGTTGTGCCACAGTCACA 59.515 47.619 0.00 0.00 42.10 3.58
1260 1298 3.303495 CGATTTCAACATAGTTCGAGCGT 59.697 43.478 0.00 0.00 0.00 5.07
1277 1315 2.093658 ACACCAAGGTAGCGATCGATTT 60.094 45.455 21.57 0.11 0.00 2.17
1628 1666 1.521450 CGCCCTGGCCATTGATGATC 61.521 60.000 5.51 0.00 37.98 2.92
1738 1776 2.156504 CGAGTGCAAGATGATATTCGGC 59.843 50.000 0.00 0.00 0.00 5.54
1740 1778 4.919754 TGATCGAGTGCAAGATGATATTCG 59.080 41.667 5.46 0.00 0.00 3.34
1811 1849 3.117171 GCACGCTCTGCACTCCAG 61.117 66.667 0.00 0.00 46.29 3.86
1868 1906 3.470645 AGAACTTGCTGTTTACCGACT 57.529 42.857 0.00 0.00 39.30 4.18
1952 1990 1.955778 CATCTGTGTTTGGGCTGTTCA 59.044 47.619 0.00 0.00 0.00 3.18
2113 2151 4.473520 CCGTCCAAGGCTGCCGAT 62.474 66.667 13.96 3.31 0.00 4.18
2357 2402 1.967779 TGAACGTGATGTCCTTGAGGA 59.032 47.619 0.00 0.00 43.08 3.71
2584 2633 4.281898 ACTAAATTAAGGTCGCACCAGT 57.718 40.909 7.86 0.00 41.95 4.00
2650 2699 6.715264 AGGAAACAACAAATTCGTCTAGGAAT 59.285 34.615 0.00 0.00 38.24 3.01
2651 2700 6.017440 CAGGAAACAACAAATTCGTCTAGGAA 60.017 38.462 0.00 0.00 0.00 3.36
2652 2701 5.468746 CAGGAAACAACAAATTCGTCTAGGA 59.531 40.000 0.00 0.00 0.00 2.94
2653 2702 5.238650 ACAGGAAACAACAAATTCGTCTAGG 59.761 40.000 0.00 0.00 0.00 3.02
2654 2703 6.300354 ACAGGAAACAACAAATTCGTCTAG 57.700 37.500 0.00 0.00 0.00 2.43
2655 2704 6.491394 CAACAGGAAACAACAAATTCGTCTA 58.509 36.000 0.00 0.00 0.00 2.59
2656 2705 5.339990 CAACAGGAAACAACAAATTCGTCT 58.660 37.500 0.00 0.00 0.00 4.18
2755 2817 2.010145 CGATCGGGTTCACTGATTGT 57.990 50.000 7.38 0.00 45.22 2.71
2790 2852 2.084546 GTCCACATAAACACAGAGCCC 58.915 52.381 0.00 0.00 0.00 5.19
2791 2853 1.732259 CGTCCACATAAACACAGAGCC 59.268 52.381 0.00 0.00 0.00 4.70
2793 2855 4.494484 TGATCGTCCACATAAACACAGAG 58.506 43.478 0.00 0.00 0.00 3.35
2794 2856 4.021456 ACTGATCGTCCACATAAACACAGA 60.021 41.667 0.00 0.00 0.00 3.41
2797 2859 3.181520 GCACTGATCGTCCACATAAACAC 60.182 47.826 0.00 0.00 0.00 3.32
2798 2860 3.000041 GCACTGATCGTCCACATAAACA 59.000 45.455 0.00 0.00 0.00 2.83
2799 2861 2.029244 CGCACTGATCGTCCACATAAAC 59.971 50.000 0.00 0.00 0.00 2.01
2800 2862 2.267426 CGCACTGATCGTCCACATAAA 58.733 47.619 0.00 0.00 0.00 1.40
2819 2897 1.135972 GCACACTGGTCAACATAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
2854 2932 2.548480 GCGCTACAATAACAGATTCCCC 59.452 50.000 0.00 0.00 0.00 4.81
2874 2952 1.016130 ATGCGTCACTACAGTGCAGC 61.016 55.000 16.60 16.60 45.25 5.25
2899 2977 1.734465 CAACCTCAAGCCGTCAGATTC 59.266 52.381 0.00 0.00 0.00 2.52
2944 3022 3.288308 AAGTCAGCGGGCGTCTGAG 62.288 63.158 0.00 0.00 40.82 3.35
2968 3046 1.408127 CCCGGATATGTTGACTTGGCA 60.408 52.381 0.73 0.00 0.00 4.92
2984 3062 0.673644 CTTGCACTTCCTGTACCCGG 60.674 60.000 0.00 0.00 0.00 5.73
2985 3063 0.034896 ACTTGCACTTCCTGTACCCG 59.965 55.000 0.00 0.00 0.00 5.28
2986 3064 2.565834 TCTACTTGCACTTCCTGTACCC 59.434 50.000 0.00 0.00 0.00 3.69
2987 3065 3.955650 TCTACTTGCACTTCCTGTACC 57.044 47.619 0.00 0.00 0.00 3.34
2988 3066 7.010552 CACATATTCTACTTGCACTTCCTGTAC 59.989 40.741 0.00 0.00 0.00 2.90
2989 3067 7.041721 CACATATTCTACTTGCACTTCCTGTA 58.958 38.462 0.00 0.00 0.00 2.74
2990 3068 5.877012 CACATATTCTACTTGCACTTCCTGT 59.123 40.000 0.00 0.00 0.00 4.00
2991 3069 5.877012 ACACATATTCTACTTGCACTTCCTG 59.123 40.000 0.00 0.00 0.00 3.86
2992 3070 5.877012 CACACATATTCTACTTGCACTTCCT 59.123 40.000 0.00 0.00 0.00 3.36
2993 3071 5.447818 GCACACATATTCTACTTGCACTTCC 60.448 44.000 0.00 0.00 0.00 3.46
2994 3072 5.122239 TGCACACATATTCTACTTGCACTTC 59.878 40.000 0.00 0.00 33.72 3.01
2995 3073 5.003160 TGCACACATATTCTACTTGCACTT 58.997 37.500 0.00 0.00 33.72 3.16
2996 3074 4.578871 TGCACACATATTCTACTTGCACT 58.421 39.130 0.00 0.00 33.72 4.40
2997 3075 4.944962 TGCACACATATTCTACTTGCAC 57.055 40.909 0.00 0.00 33.72 4.57
2998 3076 5.003160 AGTTGCACACATATTCTACTTGCA 58.997 37.500 0.00 0.00 36.74 4.08
2999 3077 5.551760 AGTTGCACACATATTCTACTTGC 57.448 39.130 0.00 0.00 0.00 4.01
3000 3078 5.796935 GCAAGTTGCACACATATTCTACTTG 59.203 40.000 22.90 13.59 44.26 3.16
3001 3079 5.942872 GCAAGTTGCACACATATTCTACTT 58.057 37.500 22.90 0.00 44.26 2.24
3002 3080 5.551760 GCAAGTTGCACACATATTCTACT 57.448 39.130 22.90 0.00 44.26 2.57
3017 3095 4.202101 TGGTTGAAAGTGGTATGCAAGTTG 60.202 41.667 0.00 0.00 0.00 3.16
3024 3102 6.567687 TGTATTGTGGTTGAAAGTGGTATG 57.432 37.500 0.00 0.00 0.00 2.39
3045 3123 3.036819 TGGCATGCTCTTCTCTCTATGT 58.963 45.455 18.92 0.00 0.00 2.29
3103 3181 4.397481 TCGATCACTGCATCTTTCATCT 57.603 40.909 0.00 0.00 0.00 2.90
3108 3186 3.930336 TCTGTTCGATCACTGCATCTTT 58.070 40.909 0.00 0.00 0.00 2.52
3139 3217 9.436957 CAGTATACAATACTCCAGTGTCTTTTT 57.563 33.333 5.50 0.00 36.67 1.94
3140 3218 8.594550 ACAGTATACAATACTCCAGTGTCTTTT 58.405 33.333 5.50 0.00 36.67 2.27
3170 3248 9.614792 GTAGTAATGATAAAACCTCCACAGATT 57.385 33.333 0.00 0.00 0.00 2.40
3204 3302 2.602217 GCTACAAACAGTCGGCTTTGTG 60.602 50.000 15.58 4.58 40.14 3.33
3274 3372 0.677288 GGTTTACCTTGGGCACAACC 59.323 55.000 0.00 0.00 37.93 3.77
3275 3373 0.677288 GGGTTTACCTTGGGCACAAC 59.323 55.000 0.00 0.00 35.85 3.32
3276 3374 0.261991 TGGGTTTACCTTGGGCACAA 59.738 50.000 0.00 0.00 41.11 3.33
3277 3375 0.261991 TTGGGTTTACCTTGGGCACA 59.738 50.000 0.00 0.00 41.11 4.57
3278 3376 1.639722 ATTGGGTTTACCTTGGGCAC 58.360 50.000 0.00 0.00 41.11 5.01
3279 3377 3.544698 TTATTGGGTTTACCTTGGGCA 57.455 42.857 0.00 0.00 41.11 5.36
3280 3378 4.765273 CATTTATTGGGTTTACCTTGGGC 58.235 43.478 0.00 0.00 41.11 5.36
3281 3379 4.679372 CGCATTTATTGGGTTTACCTTGGG 60.679 45.833 0.00 0.00 41.11 4.12
3282 3380 4.158764 TCGCATTTATTGGGTTTACCTTGG 59.841 41.667 0.00 0.00 41.11 3.61
3283 3381 5.317733 TCGCATTTATTGGGTTTACCTTG 57.682 39.130 0.00 0.00 41.11 3.61
3284 3382 6.379988 AGAATCGCATTTATTGGGTTTACCTT 59.620 34.615 0.00 0.00 41.11 3.50
3285 3383 5.891551 AGAATCGCATTTATTGGGTTTACCT 59.108 36.000 0.00 0.00 41.11 3.08
3286 3384 6.144078 AGAATCGCATTTATTGGGTTTACC 57.856 37.500 0.00 0.00 39.25 2.85
3287 3385 9.016623 GTTAAGAATCGCATTTATTGGGTTTAC 57.983 33.333 0.00 0.00 39.25 2.01
3288 3386 7.911205 CGTTAAGAATCGCATTTATTGGGTTTA 59.089 33.333 0.00 0.00 39.25 2.01
3289 3387 6.750039 CGTTAAGAATCGCATTTATTGGGTTT 59.250 34.615 0.00 0.00 39.25 3.27
3290 3388 6.094325 TCGTTAAGAATCGCATTTATTGGGTT 59.906 34.615 0.00 0.00 39.25 4.11
3291 3389 5.587043 TCGTTAAGAATCGCATTTATTGGGT 59.413 36.000 0.00 0.00 39.25 4.51
3292 3390 6.055231 TCGTTAAGAATCGCATTTATTGGG 57.945 37.500 0.00 0.00 39.56 4.12
3293 3391 9.658475 TTTATCGTTAAGAATCGCATTTATTGG 57.342 29.630 0.00 0.00 0.00 3.16
3298 3396 8.070171 CCATCTTTATCGTTAAGAATCGCATTT 58.930 33.333 0.00 0.00 35.43 2.32
3299 3397 7.576236 CCATCTTTATCGTTAAGAATCGCATT 58.424 34.615 0.00 0.00 35.43 3.56
3300 3398 6.347725 GCCATCTTTATCGTTAAGAATCGCAT 60.348 38.462 0.00 0.00 35.43 4.73
3301 3399 5.050363 GCCATCTTTATCGTTAAGAATCGCA 60.050 40.000 0.00 0.00 35.43 5.10
3302 3400 5.374898 GCCATCTTTATCGTTAAGAATCGC 58.625 41.667 0.00 0.00 35.43 4.58
3303 3401 5.388475 CCGCCATCTTTATCGTTAAGAATCG 60.388 44.000 0.00 0.00 35.43 3.34
3304 3402 5.694910 TCCGCCATCTTTATCGTTAAGAATC 59.305 40.000 0.00 0.00 35.43 2.52
3305 3403 5.607477 TCCGCCATCTTTATCGTTAAGAAT 58.393 37.500 0.00 0.00 35.43 2.40
3306 3404 5.013568 TCCGCCATCTTTATCGTTAAGAA 57.986 39.130 0.00 0.00 35.43 2.52
3307 3405 4.340097 TCTCCGCCATCTTTATCGTTAAGA 59.660 41.667 0.00 0.00 36.18 2.10
3308 3406 4.617959 TCTCCGCCATCTTTATCGTTAAG 58.382 43.478 0.00 0.00 0.00 1.85
3309 3407 4.659111 TCTCCGCCATCTTTATCGTTAA 57.341 40.909 0.00 0.00 0.00 2.01
3310 3408 4.659111 TTCTCCGCCATCTTTATCGTTA 57.341 40.909 0.00 0.00 0.00 3.18
3311 3409 3.536956 TTCTCCGCCATCTTTATCGTT 57.463 42.857 0.00 0.00 0.00 3.85
3312 3410 3.132289 TCTTTCTCCGCCATCTTTATCGT 59.868 43.478 0.00 0.00 0.00 3.73
3313 3411 3.491267 GTCTTTCTCCGCCATCTTTATCG 59.509 47.826 0.00 0.00 0.00 2.92
3314 3412 4.442706 TGTCTTTCTCCGCCATCTTTATC 58.557 43.478 0.00 0.00 0.00 1.75
3315 3413 4.162320 TCTGTCTTTCTCCGCCATCTTTAT 59.838 41.667 0.00 0.00 0.00 1.40
3316 3414 3.513912 TCTGTCTTTCTCCGCCATCTTTA 59.486 43.478 0.00 0.00 0.00 1.85
3317 3415 2.303022 TCTGTCTTTCTCCGCCATCTTT 59.697 45.455 0.00 0.00 0.00 2.52
3318 3416 1.902508 TCTGTCTTTCTCCGCCATCTT 59.097 47.619 0.00 0.00 0.00 2.40
3319 3417 1.561643 TCTGTCTTTCTCCGCCATCT 58.438 50.000 0.00 0.00 0.00 2.90
3320 3418 2.208431 CATCTGTCTTTCTCCGCCATC 58.792 52.381 0.00 0.00 0.00 3.51
3321 3419 1.745141 GCATCTGTCTTTCTCCGCCAT 60.745 52.381 0.00 0.00 0.00 4.40
3322 3420 0.391661 GCATCTGTCTTTCTCCGCCA 60.392 55.000 0.00 0.00 0.00 5.69
3323 3421 0.107945 AGCATCTGTCTTTCTCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
3324 3422 2.586258 TAGCATCTGTCTTTCTCCGC 57.414 50.000 0.00 0.00 0.00 5.54
3325 3423 6.703607 ACATAATTAGCATCTGTCTTTCTCCG 59.296 38.462 0.00 0.00 0.00 4.63
3326 3424 7.519649 GCACATAATTAGCATCTGTCTTTCTCC 60.520 40.741 0.00 0.00 0.00 3.71
3327 3425 7.011763 TGCACATAATTAGCATCTGTCTTTCTC 59.988 37.037 0.00 0.00 32.55 2.87
3328 3426 6.825213 TGCACATAATTAGCATCTGTCTTTCT 59.175 34.615 0.00 0.00 32.55 2.52
3329 3427 6.909357 GTGCACATAATTAGCATCTGTCTTTC 59.091 38.462 13.17 0.00 40.78 2.62
3330 3428 6.375174 TGTGCACATAATTAGCATCTGTCTTT 59.625 34.615 17.42 0.00 40.78 2.52
3331 3429 5.882000 TGTGCACATAATTAGCATCTGTCTT 59.118 36.000 17.42 0.00 40.78 3.01
3332 3430 5.430886 TGTGCACATAATTAGCATCTGTCT 58.569 37.500 17.42 0.00 40.78 3.41
3333 3431 5.739752 TGTGCACATAATTAGCATCTGTC 57.260 39.130 17.42 0.00 40.78 3.51
3334 3432 6.460537 CCAATGTGCACATAATTAGCATCTGT 60.461 38.462 31.55 9.30 40.78 3.41
3335 3433 5.918576 CCAATGTGCACATAATTAGCATCTG 59.081 40.000 31.55 20.45 40.78 2.90
3336 3434 5.829391 TCCAATGTGCACATAATTAGCATCT 59.171 36.000 31.55 10.05 40.78 2.90
3337 3435 6.075762 TCCAATGTGCACATAATTAGCATC 57.924 37.500 31.55 0.00 40.78 3.91
3338 3436 6.468333 TTCCAATGTGCACATAATTAGCAT 57.532 33.333 31.55 11.57 40.78 3.79
3339 3437 5.911378 TTCCAATGTGCACATAATTAGCA 57.089 34.783 31.55 10.30 35.10 3.49
3340 3438 7.920151 TGTAATTCCAATGTGCACATAATTAGC 59.080 33.333 29.56 25.01 35.10 3.09
3341 3439 9.236691 GTGTAATTCCAATGTGCACATAATTAG 57.763 33.333 29.56 19.79 35.10 1.73
3342 3440 8.965819 AGTGTAATTCCAATGTGCACATAATTA 58.034 29.630 31.55 28.90 35.10 1.40
3343 3441 7.839907 AGTGTAATTCCAATGTGCACATAATT 58.160 30.769 31.55 29.80 35.10 1.40
3344 3442 7.408756 AGTGTAATTCCAATGTGCACATAAT 57.591 32.000 31.55 23.37 35.10 1.28
3345 3443 6.832520 AGTGTAATTCCAATGTGCACATAA 57.167 33.333 31.55 22.22 35.10 1.90
3346 3444 6.881602 TGTAGTGTAATTCCAATGTGCACATA 59.118 34.615 31.55 17.18 35.10 2.29
3347 3445 5.709631 TGTAGTGTAATTCCAATGTGCACAT 59.290 36.000 26.61 26.61 38.41 3.21
3348 3446 5.066593 TGTAGTGTAATTCCAATGTGCACA 58.933 37.500 24.08 24.08 0.00 4.57
3349 3447 5.621197 TGTAGTGTAATTCCAATGTGCAC 57.379 39.130 10.75 10.75 0.00 4.57
3350 3448 6.881602 TGTATGTAGTGTAATTCCAATGTGCA 59.118 34.615 0.00 0.00 0.00 4.57
3351 3449 7.315247 TGTATGTAGTGTAATTCCAATGTGC 57.685 36.000 0.00 0.00 0.00 4.57
3380 3478 8.512138 GCTTTTATTTTCCTGTAGCAGTTTCTA 58.488 33.333 0.00 0.00 0.00 2.10
3381 3479 7.014230 TGCTTTTATTTTCCTGTAGCAGTTTCT 59.986 33.333 0.00 0.00 33.64 2.52
3382 3480 7.145323 TGCTTTTATTTTCCTGTAGCAGTTTC 58.855 34.615 0.00 0.00 33.64 2.78
3383 3481 7.049799 TGCTTTTATTTTCCTGTAGCAGTTT 57.950 32.000 0.00 0.00 33.64 2.66
3384 3482 6.648879 TGCTTTTATTTTCCTGTAGCAGTT 57.351 33.333 0.00 0.00 33.64 3.16
3385 3483 6.648879 TTGCTTTTATTTTCCTGTAGCAGT 57.351 33.333 0.00 0.00 38.27 4.40
3386 3484 7.370383 TCTTTGCTTTTATTTTCCTGTAGCAG 58.630 34.615 0.00 0.00 38.27 4.24
3387 3485 7.283625 TCTTTGCTTTTATTTTCCTGTAGCA 57.716 32.000 0.00 0.00 35.56 3.49
3388 3486 8.650714 CATTCTTTGCTTTTATTTTCCTGTAGC 58.349 33.333 0.00 0.00 0.00 3.58
3389 3487 9.912634 TCATTCTTTGCTTTTATTTTCCTGTAG 57.087 29.630 0.00 0.00 0.00 2.74
3391 3489 9.783081 AATCATTCTTTGCTTTTATTTTCCTGT 57.217 25.926 0.00 0.00 0.00 4.00
3397 3495 9.671279 CCCCTTAATCATTCTTTGCTTTTATTT 57.329 29.630 0.00 0.00 0.00 1.40
3398 3496 8.267183 CCCCCTTAATCATTCTTTGCTTTTATT 58.733 33.333 0.00 0.00 0.00 1.40
3399 3497 7.623278 TCCCCCTTAATCATTCTTTGCTTTTAT 59.377 33.333 0.00 0.00 0.00 1.40
3400 3498 6.957020 TCCCCCTTAATCATTCTTTGCTTTTA 59.043 34.615 0.00 0.00 0.00 1.52
3401 3499 5.784906 TCCCCCTTAATCATTCTTTGCTTTT 59.215 36.000 0.00 0.00 0.00 2.27
3402 3500 5.341169 TCCCCCTTAATCATTCTTTGCTTT 58.659 37.500 0.00 0.00 0.00 3.51
3403 3501 4.946646 TCCCCCTTAATCATTCTTTGCTT 58.053 39.130 0.00 0.00 0.00 3.91
3404 3502 4.608170 TCCCCCTTAATCATTCTTTGCT 57.392 40.909 0.00 0.00 0.00 3.91
3405 3503 4.956075 TCTTCCCCCTTAATCATTCTTTGC 59.044 41.667 0.00 0.00 0.00 3.68
3406 3504 6.096001 CAGTCTTCCCCCTTAATCATTCTTTG 59.904 42.308 0.00 0.00 0.00 2.77
3407 3505 6.011628 TCAGTCTTCCCCCTTAATCATTCTTT 60.012 38.462 0.00 0.00 0.00 2.52
3408 3506 5.492524 TCAGTCTTCCCCCTTAATCATTCTT 59.507 40.000 0.00 0.00 0.00 2.52
3409 3507 5.039645 TCAGTCTTCCCCCTTAATCATTCT 58.960 41.667 0.00 0.00 0.00 2.40
3410 3508 5.373812 TCAGTCTTCCCCCTTAATCATTC 57.626 43.478 0.00 0.00 0.00 2.67
3411 3509 6.347061 AATCAGTCTTCCCCCTTAATCATT 57.653 37.500 0.00 0.00 0.00 2.57
3412 3510 6.347061 AAATCAGTCTTCCCCCTTAATCAT 57.653 37.500 0.00 0.00 0.00 2.45
3413 3511 5.796502 AAATCAGTCTTCCCCCTTAATCA 57.203 39.130 0.00 0.00 0.00 2.57
3414 3512 5.163509 GCAAAATCAGTCTTCCCCCTTAATC 60.164 44.000 0.00 0.00 0.00 1.75
3415 3513 4.711846 GCAAAATCAGTCTTCCCCCTTAAT 59.288 41.667 0.00 0.00 0.00 1.40
3416 3514 4.086457 GCAAAATCAGTCTTCCCCCTTAA 58.914 43.478 0.00 0.00 0.00 1.85
3417 3515 3.075283 TGCAAAATCAGTCTTCCCCCTTA 59.925 43.478 0.00 0.00 0.00 2.69
3418 3516 2.158325 TGCAAAATCAGTCTTCCCCCTT 60.158 45.455 0.00 0.00 0.00 3.95
3419 3517 1.428912 TGCAAAATCAGTCTTCCCCCT 59.571 47.619 0.00 0.00 0.00 4.79
3420 3518 1.923356 TGCAAAATCAGTCTTCCCCC 58.077 50.000 0.00 0.00 0.00 5.40
3421 3519 4.526970 TCTATGCAAAATCAGTCTTCCCC 58.473 43.478 0.00 0.00 0.00 4.81
3422 3520 6.071952 TGTTTCTATGCAAAATCAGTCTTCCC 60.072 38.462 0.00 0.00 0.00 3.97
3423 3521 6.803807 GTGTTTCTATGCAAAATCAGTCTTCC 59.196 38.462 0.00 0.00 0.00 3.46
3424 3522 6.803807 GGTGTTTCTATGCAAAATCAGTCTTC 59.196 38.462 0.00 0.00 0.00 2.87
3425 3523 6.568462 CGGTGTTTCTATGCAAAATCAGTCTT 60.568 38.462 0.00 0.00 0.00 3.01
3426 3524 5.106555 CGGTGTTTCTATGCAAAATCAGTCT 60.107 40.000 0.00 0.00 0.00 3.24
3427 3525 5.088739 CGGTGTTTCTATGCAAAATCAGTC 58.911 41.667 0.00 0.00 0.00 3.51
3428 3526 4.518970 ACGGTGTTTCTATGCAAAATCAGT 59.481 37.500 0.00 0.00 0.00 3.41
3429 3527 5.046910 ACGGTGTTTCTATGCAAAATCAG 57.953 39.130 0.00 0.00 0.00 2.90
3430 3528 5.703592 ACTACGGTGTTTCTATGCAAAATCA 59.296 36.000 0.00 0.00 0.00 2.57
3431 3529 6.092259 AGACTACGGTGTTTCTATGCAAAATC 59.908 38.462 0.00 0.00 0.00 2.17
3432 3530 5.938125 AGACTACGGTGTTTCTATGCAAAAT 59.062 36.000 0.00 0.00 0.00 1.82
3433 3531 5.302360 AGACTACGGTGTTTCTATGCAAAA 58.698 37.500 0.00 0.00 0.00 2.44
3434 3532 4.890088 AGACTACGGTGTTTCTATGCAAA 58.110 39.130 0.00 0.00 0.00 3.68
3435 3533 4.491676 GAGACTACGGTGTTTCTATGCAA 58.508 43.478 0.00 0.00 0.00 4.08
3436 3534 3.119245 GGAGACTACGGTGTTTCTATGCA 60.119 47.826 0.00 0.00 0.00 3.96
3437 3535 3.119245 TGGAGACTACGGTGTTTCTATGC 60.119 47.826 0.00 0.00 0.00 3.14
3438 3536 4.713824 TGGAGACTACGGTGTTTCTATG 57.286 45.455 0.00 0.00 0.00 2.23
3439 3537 5.934402 AATGGAGACTACGGTGTTTCTAT 57.066 39.130 0.00 0.00 0.00 1.98
3440 3538 5.733620 AAATGGAGACTACGGTGTTTCTA 57.266 39.130 0.00 0.00 0.00 2.10
3441 3539 4.618920 AAATGGAGACTACGGTGTTTCT 57.381 40.909 0.00 0.00 0.00 2.52
3442 3540 5.469084 AGAAAAATGGAGACTACGGTGTTTC 59.531 40.000 0.00 0.00 0.00 2.78
3443 3541 5.374071 AGAAAAATGGAGACTACGGTGTTT 58.626 37.500 0.00 0.00 0.00 2.83
3444 3542 4.969484 AGAAAAATGGAGACTACGGTGTT 58.031 39.130 0.00 0.00 0.00 3.32
3445 3543 4.618920 AGAAAAATGGAGACTACGGTGT 57.381 40.909 0.00 0.00 0.00 4.16
3446 3544 6.425721 TGTTTAGAAAAATGGAGACTACGGTG 59.574 38.462 0.00 0.00 0.00 4.94
3447 3545 6.527423 TGTTTAGAAAAATGGAGACTACGGT 58.473 36.000 0.00 0.00 0.00 4.83
3448 3546 7.611213 ATGTTTAGAAAAATGGAGACTACGG 57.389 36.000 0.00 0.00 0.00 4.02
3474 3572 9.689976 GCATGCTATACGAGAATGAGATATTAT 57.310 33.333 11.37 0.00 43.42 1.28
3475 3573 8.686334 TGCATGCTATACGAGAATGAGATATTA 58.314 33.333 20.33 0.00 43.42 0.98
3476 3574 7.490725 GTGCATGCTATACGAGAATGAGATATT 59.509 37.037 20.33 0.00 43.42 1.28
3477 3575 6.977502 GTGCATGCTATACGAGAATGAGATAT 59.022 38.462 20.33 0.00 43.42 1.63
3478 3576 6.071952 TGTGCATGCTATACGAGAATGAGATA 60.072 38.462 20.33 0.00 43.42 1.98
3479 3577 5.167121 GTGCATGCTATACGAGAATGAGAT 58.833 41.667 20.33 0.00 43.42 2.75
3480 3578 4.037923 TGTGCATGCTATACGAGAATGAGA 59.962 41.667 20.33 0.00 43.42 3.27
3481 3579 4.149571 GTGTGCATGCTATACGAGAATGAG 59.850 45.833 20.33 0.00 43.42 2.90
3482 3580 4.051237 GTGTGCATGCTATACGAGAATGA 58.949 43.478 20.33 0.00 43.42 2.57
3483 3581 4.053983 AGTGTGCATGCTATACGAGAATG 58.946 43.478 20.33 0.00 43.57 2.67
3484 3582 4.053983 CAGTGTGCATGCTATACGAGAAT 58.946 43.478 20.33 0.00 0.00 2.40
3485 3583 3.447742 CAGTGTGCATGCTATACGAGAA 58.552 45.455 20.33 0.00 0.00 2.87
3486 3584 2.223805 CCAGTGTGCATGCTATACGAGA 60.224 50.000 20.33 0.00 0.00 4.04
3487 3585 2.130395 CCAGTGTGCATGCTATACGAG 58.870 52.381 20.33 12.07 0.00 4.18
3488 3586 1.754226 TCCAGTGTGCATGCTATACGA 59.246 47.619 20.33 4.62 0.00 3.43
3489 3587 1.860950 GTCCAGTGTGCATGCTATACG 59.139 52.381 20.33 10.62 0.00 3.06
3490 3588 2.868583 CAGTCCAGTGTGCATGCTATAC 59.131 50.000 20.33 14.43 0.00 1.47
3491 3589 2.765699 TCAGTCCAGTGTGCATGCTATA 59.234 45.455 20.33 1.88 0.00 1.31
3492 3590 1.556451 TCAGTCCAGTGTGCATGCTAT 59.444 47.619 20.33 0.00 0.00 2.97
3493 3591 0.975887 TCAGTCCAGTGTGCATGCTA 59.024 50.000 20.33 5.09 0.00 3.49
3494 3592 0.109153 TTCAGTCCAGTGTGCATGCT 59.891 50.000 20.33 0.00 0.00 3.79
3495 3593 0.953727 TTTCAGTCCAGTGTGCATGC 59.046 50.000 11.82 11.82 0.00 4.06
3496 3594 2.815503 TGATTTCAGTCCAGTGTGCATG 59.184 45.455 0.00 0.00 0.00 4.06
3497 3595 3.144657 TGATTTCAGTCCAGTGTGCAT 57.855 42.857 0.00 0.00 0.00 3.96
3498 3596 2.636647 TGATTTCAGTCCAGTGTGCA 57.363 45.000 0.00 0.00 0.00 4.57
3499 3597 3.076621 TCATGATTTCAGTCCAGTGTGC 58.923 45.455 0.00 0.00 0.00 4.57
3500 3598 4.033702 CGATCATGATTTCAGTCCAGTGTG 59.966 45.833 10.14 0.00 0.00 3.82
3501 3599 4.186926 CGATCATGATTTCAGTCCAGTGT 58.813 43.478 10.14 0.00 0.00 3.55
3502 3600 4.033702 CACGATCATGATTTCAGTCCAGTG 59.966 45.833 10.14 5.91 0.00 3.66
3503 3601 4.186926 CACGATCATGATTTCAGTCCAGT 58.813 43.478 10.14 0.00 0.00 4.00
3504 3602 4.186926 ACACGATCATGATTTCAGTCCAG 58.813 43.478 10.14 0.53 0.00 3.86
3505 3603 4.206477 ACACGATCATGATTTCAGTCCA 57.794 40.909 10.14 0.00 0.00 4.02
3506 3604 6.662414 TTTACACGATCATGATTTCAGTCC 57.338 37.500 10.14 0.00 0.00 3.85
3507 3605 7.128331 CCATTTACACGATCATGATTTCAGTC 58.872 38.462 10.14 0.00 0.00 3.51
3508 3606 6.458751 GCCATTTACACGATCATGATTTCAGT 60.459 38.462 10.14 9.06 0.00 3.41
3509 3607 5.911280 GCCATTTACACGATCATGATTTCAG 59.089 40.000 10.14 4.93 0.00 3.02
3510 3608 5.356470 TGCCATTTACACGATCATGATTTCA 59.644 36.000 10.14 0.00 0.00 2.69
3511 3609 5.820131 TGCCATTTACACGATCATGATTTC 58.180 37.500 10.14 0.00 0.00 2.17
3512 3610 5.833406 TGCCATTTACACGATCATGATTT 57.167 34.783 10.14 0.00 0.00 2.17
3513 3611 5.833406 TTGCCATTTACACGATCATGATT 57.167 34.783 10.14 0.00 0.00 2.57
3514 3612 5.221106 CCTTTGCCATTTACACGATCATGAT 60.221 40.000 8.25 8.25 0.00 2.45
3515 3613 4.096231 CCTTTGCCATTTACACGATCATGA 59.904 41.667 0.00 0.00 0.00 3.07
3516 3614 4.096231 TCCTTTGCCATTTACACGATCATG 59.904 41.667 0.00 0.00 0.00 3.07
3517 3615 4.269183 TCCTTTGCCATTTACACGATCAT 58.731 39.130 0.00 0.00 0.00 2.45
3518 3616 3.680490 TCCTTTGCCATTTACACGATCA 58.320 40.909 0.00 0.00 0.00 2.92
3519 3617 4.083003 TGTTCCTTTGCCATTTACACGATC 60.083 41.667 0.00 0.00 0.00 3.69
3520 3618 3.823873 TGTTCCTTTGCCATTTACACGAT 59.176 39.130 0.00 0.00 0.00 3.73
3521 3619 3.215151 TGTTCCTTTGCCATTTACACGA 58.785 40.909 0.00 0.00 0.00 4.35
3522 3620 3.634568 TGTTCCTTTGCCATTTACACG 57.365 42.857 0.00 0.00 0.00 4.49
3523 3621 6.859420 AATTTGTTCCTTTGCCATTTACAC 57.141 33.333 0.00 0.00 0.00 2.90
3524 3622 7.256756 CAAATTTGTTCCTTTGCCATTTACA 57.743 32.000 10.15 0.00 0.00 2.41
3533 3631 8.829612 AGTCTATTTTGCAAATTTGTTCCTTTG 58.170 29.630 19.03 6.31 35.84 2.77
3534 3632 8.962884 AGTCTATTTTGCAAATTTGTTCCTTT 57.037 26.923 19.03 3.98 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.