Multiple sequence alignment - TraesCS2D01G467900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467900 chr2D 100.000 4674 0 0 1 4674 572786154 572790827 0.000000e+00 8632
1 TraesCS2D01G467900 chr2D 97.316 708 17 1 3966 4671 30185275 30185982 0.000000e+00 1201
2 TraesCS2D01G467900 chr2D 97.013 703 21 0 3965 4667 73206690 73205988 0.000000e+00 1182
3 TraesCS2D01G467900 chr2B 93.758 1634 70 12 2353 3965 688461376 688462998 0.000000e+00 2423
4 TraesCS2D01G467900 chr2B 90.364 1702 84 26 632 2327 688459748 688461375 0.000000e+00 2161
5 TraesCS2D01G467900 chr2B 91.625 1397 85 21 2593 3965 689105258 689106646 0.000000e+00 1903
6 TraesCS2D01G467900 chr2B 94.859 603 22 2 3372 3965 689310781 689311383 0.000000e+00 933
7 TraesCS2D01G467900 chr2B 90.000 650 51 8 3963 4605 518761874 518762516 0.000000e+00 828
8 TraesCS2D01G467900 chr2B 90.217 460 26 5 2144 2599 689104579 689105023 2.420000e-162 582
9 TraesCS2D01G467900 chr2B 90.395 354 22 6 1311 1664 689089160 689089501 5.510000e-124 455
10 TraesCS2D01G467900 chr2B 91.401 314 19 3 1694 2005 689104272 689104579 1.550000e-114 424
11 TraesCS2D01G467900 chr2B 91.749 303 19 5 1 299 688459039 688459339 2.600000e-112 416
12 TraesCS2D01G467900 chr2A 89.327 2005 105 51 636 2608 711976833 711978760 0.000000e+00 2416
13 TraesCS2D01G467900 chr2A 92.898 1408 43 23 2606 3965 711978839 711980237 0.000000e+00 1993
14 TraesCS2D01G467900 chr2A 89.587 509 26 13 1 498 711976114 711976606 5.140000e-174 621
15 TraesCS2D01G467900 chr5D 93.277 714 37 5 3965 4671 529801785 529802494 0.000000e+00 1042
16 TraesCS2D01G467900 chr1D 92.017 714 43 4 3965 4671 470209446 470208740 0.000000e+00 990
17 TraesCS2D01G467900 chr5A 92.146 713 29 6 3963 4671 356444186 356444875 0.000000e+00 981
18 TraesCS2D01G467900 chr3A 91.201 716 51 3 3965 4674 725342531 725341822 0.000000e+00 963
19 TraesCS2D01G467900 chr3A 87.681 138 8 2 4543 4671 697393343 697393480 8.100000e-33 152
20 TraesCS2D01G467900 chr1A 90.656 717 52 5 3963 4671 150882849 150883558 0.000000e+00 939
21 TraesCS2D01G467900 chr7A 89.540 717 60 9 3963 4671 733524682 733523973 0.000000e+00 894
22 TraesCS2D01G467900 chr7A 85.000 760 43 21 3962 4674 163914689 163913954 0.000000e+00 706
23 TraesCS2D01G467900 chr7A 95.050 101 4 1 4573 4672 675127738 675127838 1.740000e-34 158
24 TraesCS2D01G467900 chr7A 95.890 73 3 0 4601 4673 157597570 157597642 8.220000e-23 119
25 TraesCS2D01G467900 chr1B 90.712 646 50 7 3963 4605 121402599 121401961 0.000000e+00 852


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467900 chr2D 572786154 572790827 4673 False 8632.000000 8632 100.000 1 4674 1 chr2D.!!$F2 4673
1 TraesCS2D01G467900 chr2D 30185275 30185982 707 False 1201.000000 1201 97.316 3966 4671 1 chr2D.!!$F1 705
2 TraesCS2D01G467900 chr2D 73205988 73206690 702 True 1182.000000 1182 97.013 3965 4667 1 chr2D.!!$R1 702
3 TraesCS2D01G467900 chr2B 688459039 688462998 3959 False 1666.666667 2423 91.957 1 3965 3 chr2B.!!$F4 3964
4 TraesCS2D01G467900 chr2B 689104272 689106646 2374 False 969.666667 1903 91.081 1694 3965 3 chr2B.!!$F5 2271
5 TraesCS2D01G467900 chr2B 689310781 689311383 602 False 933.000000 933 94.859 3372 3965 1 chr2B.!!$F3 593
6 TraesCS2D01G467900 chr2B 518761874 518762516 642 False 828.000000 828 90.000 3963 4605 1 chr2B.!!$F1 642
7 TraesCS2D01G467900 chr2A 711976114 711980237 4123 False 1676.666667 2416 90.604 1 3965 3 chr2A.!!$F1 3964
8 TraesCS2D01G467900 chr5D 529801785 529802494 709 False 1042.000000 1042 93.277 3965 4671 1 chr5D.!!$F1 706
9 TraesCS2D01G467900 chr1D 470208740 470209446 706 True 990.000000 990 92.017 3965 4671 1 chr1D.!!$R1 706
10 TraesCS2D01G467900 chr5A 356444186 356444875 689 False 981.000000 981 92.146 3963 4671 1 chr5A.!!$F1 708
11 TraesCS2D01G467900 chr3A 725341822 725342531 709 True 963.000000 963 91.201 3965 4674 1 chr3A.!!$R1 709
12 TraesCS2D01G467900 chr1A 150882849 150883558 709 False 939.000000 939 90.656 3963 4671 1 chr1A.!!$F1 708
13 TraesCS2D01G467900 chr7A 733523973 733524682 709 True 894.000000 894 89.540 3963 4671 1 chr7A.!!$R2 708
14 TraesCS2D01G467900 chr7A 163913954 163914689 735 True 706.000000 706 85.000 3962 4674 1 chr7A.!!$R1 712
15 TraesCS2D01G467900 chr1B 121401961 121402599 638 True 852.000000 852 90.712 3963 4605 1 chr1B.!!$R1 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 836 0.040157 GCAGCACACGAATCTTTGCA 60.040 50.0 0.0 0.0 37.44 4.08 F
713 844 0.179215 CGAATCTTTGCACACGGCTC 60.179 55.0 0.0 0.0 45.15 4.70 F
714 845 0.179215 GAATCTTTGCACACGGCTCG 60.179 55.0 0.0 0.0 45.15 5.03 F
2465 2636 0.892755 AATGCCCTTCACGACGTAGA 59.107 50.0 0.0 0.0 0.00 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 2467 0.106519 AAACTGGCAGGAGCAACTGT 60.107 50.000 20.34 0.0 44.61 3.55 R
2441 2612 2.093658 ACGTCGTGAAGGGCATTTCTAT 60.094 45.455 0.00 0.0 0.00 1.98 R
2519 2696 5.335269 CGACAAAACCACATAAATAGTGCCA 60.335 40.000 0.00 0.0 35.69 4.92 R
4298 4921 4.003648 GGACGAGGAATGATGTGTCTTTT 58.996 43.478 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 6.421485 CAGGGTCTAAGTAGTGAGGTACTTA 58.579 44.000 0.00 4.01 42.19 2.24
105 106 4.771054 AGGTACTTACAGAATTCACCGAGT 59.229 41.667 8.44 8.67 27.25 4.18
146 147 0.529119 GTCAAGACGTTGTCACCCGT 60.529 55.000 0.00 0.00 40.54 5.28
207 208 6.313411 GTGAATACCTATATAGAGACGCGTCT 59.687 42.308 39.89 39.89 43.78 4.18
255 256 3.857157 TTGTTCTGGTTGTAAGCCTCT 57.143 42.857 0.00 0.00 0.00 3.69
256 257 3.857157 TGTTCTGGTTGTAAGCCTCTT 57.143 42.857 0.00 0.00 0.00 2.85
259 260 2.334977 TCTGGTTGTAAGCCTCTTCCA 58.665 47.619 0.00 0.00 0.00 3.53
311 319 4.013267 AGATCTGACCACCAAAGTCTTG 57.987 45.455 0.00 0.00 35.21 3.02
351 367 6.461509 GGTTTGATGGTTTTAGGCCTATGATG 60.462 42.308 14.74 0.00 0.00 3.07
352 368 5.645056 TGATGGTTTTAGGCCTATGATGA 57.355 39.130 14.74 0.00 0.00 2.92
353 369 6.204852 TGATGGTTTTAGGCCTATGATGAT 57.795 37.500 14.74 3.57 0.00 2.45
406 422 0.675633 AGGCAATGCTGGTGTGTTTC 59.324 50.000 4.82 0.00 0.00 2.78
412 428 1.473258 TGCTGGTGTGTTTCTGCTTT 58.527 45.000 0.00 0.00 0.00 3.51
413 429 1.824230 TGCTGGTGTGTTTCTGCTTTT 59.176 42.857 0.00 0.00 0.00 2.27
414 430 2.159254 TGCTGGTGTGTTTCTGCTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
423 439 4.394920 GTGTTTCTGCTTTTCGATCCCATA 59.605 41.667 0.00 0.00 0.00 2.74
425 441 5.066375 TGTTTCTGCTTTTCGATCCCATATG 59.934 40.000 0.00 0.00 0.00 1.78
426 442 3.141398 TCTGCTTTTCGATCCCATATGC 58.859 45.455 0.00 0.00 0.00 3.14
427 443 3.144506 CTGCTTTTCGATCCCATATGCT 58.855 45.455 0.00 0.00 0.00 3.79
428 444 4.040339 TCTGCTTTTCGATCCCATATGCTA 59.960 41.667 0.00 0.00 0.00 3.49
429 445 4.318332 TGCTTTTCGATCCCATATGCTAG 58.682 43.478 0.00 0.00 0.00 3.42
430 446 4.202357 TGCTTTTCGATCCCATATGCTAGT 60.202 41.667 0.00 0.00 0.00 2.57
431 447 4.153117 GCTTTTCGATCCCATATGCTAGTG 59.847 45.833 0.00 0.00 0.00 2.74
434 450 3.239449 TCGATCCCATATGCTAGTGGTT 58.761 45.455 0.00 0.00 33.55 3.67
436 452 2.638480 TCCCATATGCTAGTGGTTGC 57.362 50.000 0.00 0.00 33.55 4.17
443 459 2.042831 GCTAGTGGTTGCTGCCAGG 61.043 63.158 0.00 0.00 39.53 4.45
444 460 1.377725 CTAGTGGTTGCTGCCAGGG 60.378 63.158 0.00 0.00 39.53 4.45
464 480 6.609616 CCAGGGTATTGTTATTTGTGGGTTAT 59.390 38.462 0.00 0.00 0.00 1.89
465 481 7.780745 CCAGGGTATTGTTATTTGTGGGTTATA 59.219 37.037 0.00 0.00 0.00 0.98
467 483 9.362151 AGGGTATTGTTATTTGTGGGTTATATG 57.638 33.333 0.00 0.00 0.00 1.78
475 491 9.458374 GTTATTTGTGGGTTATATGTATGTTGC 57.542 33.333 0.00 0.00 0.00 4.17
477 493 7.652524 TTTGTGGGTTATATGTATGTTGCAT 57.347 32.000 0.00 0.00 0.00 3.96
478 494 6.875948 TGTGGGTTATATGTATGTTGCATC 57.124 37.500 0.00 0.00 0.00 3.91
498 528 1.138464 CCTCTCTGCAGCTGCTGAATA 59.862 52.381 37.29 28.90 45.93 1.75
500 530 2.867368 CTCTCTGCAGCTGCTGAATAAG 59.133 50.000 37.29 30.26 45.93 1.73
514 544 4.856664 CTGAATAAGCATGAACATGAGGC 58.143 43.478 17.40 3.64 41.20 4.70
515 545 3.633525 TGAATAAGCATGAACATGAGGCC 59.366 43.478 17.40 0.00 41.20 5.19
516 546 2.804986 TAAGCATGAACATGAGGCCA 57.195 45.000 17.40 0.00 41.20 5.36
517 547 2.154567 AAGCATGAACATGAGGCCAT 57.845 45.000 17.40 0.00 41.20 4.40
518 548 1.688772 AGCATGAACATGAGGCCATC 58.311 50.000 17.40 0.00 41.20 3.51
519 549 0.672342 GCATGAACATGAGGCCATCC 59.328 55.000 17.40 0.00 41.20 3.51
522 552 2.905415 TGAACATGAGGCCATCCTTT 57.095 45.000 5.01 0.00 44.46 3.11
523 553 3.173953 TGAACATGAGGCCATCCTTTT 57.826 42.857 5.01 0.00 44.46 2.27
525 555 2.610438 ACATGAGGCCATCCTTTTGT 57.390 45.000 5.01 0.00 44.46 2.83
528 558 0.400213 TGAGGCCATCCTTTTGTCGT 59.600 50.000 5.01 0.00 44.46 4.34
530 560 1.886542 GAGGCCATCCTTTTGTCGTTT 59.113 47.619 5.01 0.00 44.46 3.60
531 561 1.613437 AGGCCATCCTTTTGTCGTTTG 59.387 47.619 5.01 0.00 40.66 2.93
532 562 1.336795 GGCCATCCTTTTGTCGTTTGG 60.337 52.381 0.00 0.00 0.00 3.28
537 604 2.510613 TCCTTTTGTCGTTTGGATCCC 58.489 47.619 9.90 0.00 0.00 3.85
542 609 4.561500 TTTGTCGTTTGGATCCCTATCA 57.438 40.909 9.90 0.00 33.41 2.15
544 611 2.434336 TGTCGTTTGGATCCCTATCAGG 59.566 50.000 9.90 0.00 33.41 3.86
555 622 2.520120 TCCCTATCAGGATGGTCTCACT 59.480 50.000 0.00 0.00 37.67 3.41
557 624 3.303938 CCTATCAGGATGGTCTCACTGT 58.696 50.000 0.00 0.00 37.67 3.55
560 627 1.625315 TCAGGATGGTCTCACTGTTGG 59.375 52.381 0.00 0.00 36.16 3.77
561 628 0.326264 AGGATGGTCTCACTGTTGGC 59.674 55.000 0.00 0.00 0.00 4.52
563 630 0.320771 GATGGTCTCACTGTTGGCGT 60.321 55.000 0.00 0.00 0.00 5.68
566 633 0.307760 GGTCTCACTGTTGGCGTTTG 59.692 55.000 0.00 0.00 0.00 2.93
569 636 1.202592 TCTCACTGTTGGCGTTTGCTA 60.203 47.619 0.00 0.00 42.25 3.49
587 655 0.756442 TAGCCATTTCCCTGCCATGC 60.756 55.000 0.00 0.00 0.00 4.06
588 656 2.809706 CCATTTCCCTGCCATGCG 59.190 61.111 0.00 0.00 0.00 4.73
589 657 2.053865 CCATTTCCCTGCCATGCGT 61.054 57.895 0.00 0.00 0.00 5.24
592 660 3.936772 TTTCCCTGCCATGCGTCCC 62.937 63.158 0.00 0.00 0.00 4.46
596 664 4.552365 CTGCCATGCGTCCCCGAT 62.552 66.667 0.00 0.00 35.63 4.18
597 665 4.545706 TGCCATGCGTCCCCGATC 62.546 66.667 0.00 0.00 35.63 3.69
599 667 2.029666 CCATGCGTCCCCGATCTC 59.970 66.667 0.00 0.00 35.63 2.75
600 668 2.796193 CCATGCGTCCCCGATCTCA 61.796 63.158 0.00 0.00 35.63 3.27
601 669 1.143838 CATGCGTCCCCGATCTCAA 59.856 57.895 0.00 0.00 35.63 3.02
602 670 0.461870 CATGCGTCCCCGATCTCAAA 60.462 55.000 0.00 0.00 35.63 2.69
603 671 0.462047 ATGCGTCCCCGATCTCAAAC 60.462 55.000 0.00 0.00 35.63 2.93
605 673 0.391263 GCGTCCCCGATCTCAAACTT 60.391 55.000 0.00 0.00 35.63 2.66
606 674 1.134907 GCGTCCCCGATCTCAAACTTA 60.135 52.381 0.00 0.00 35.63 2.24
607 675 2.483188 GCGTCCCCGATCTCAAACTTAT 60.483 50.000 0.00 0.00 35.63 1.73
608 676 3.793559 CGTCCCCGATCTCAAACTTATT 58.206 45.455 0.00 0.00 35.63 1.40
610 678 4.634443 CGTCCCCGATCTCAAACTTATTTT 59.366 41.667 0.00 0.00 35.63 1.82
611 679 5.220605 CGTCCCCGATCTCAAACTTATTTTC 60.221 44.000 0.00 0.00 35.63 2.29
612 680 5.880887 GTCCCCGATCTCAAACTTATTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
613 681 6.374613 GTCCCCGATCTCAAACTTATTTTCTT 59.625 38.462 0.00 0.00 0.00 2.52
614 682 6.946009 TCCCCGATCTCAAACTTATTTTCTTT 59.054 34.615 0.00 0.00 0.00 2.52
615 683 7.029563 CCCCGATCTCAAACTTATTTTCTTTG 58.970 38.462 0.00 0.00 0.00 2.77
616 684 6.528072 CCCGATCTCAAACTTATTTTCTTTGC 59.472 38.462 0.00 0.00 0.00 3.68
617 685 6.528072 CCGATCTCAAACTTATTTTCTTTGCC 59.472 38.462 0.00 0.00 0.00 4.52
618 686 6.249260 CGATCTCAAACTTATTTTCTTTGCCG 59.751 38.462 0.00 0.00 0.00 5.69
622 690 8.407064 TCTCAAACTTATTTTCTTTGCCGTTTA 58.593 29.630 0.00 0.00 0.00 2.01
623 691 8.928270 TCAAACTTATTTTCTTTGCCGTTTAA 57.072 26.923 0.00 0.00 0.00 1.52
624 692 9.367444 TCAAACTTATTTTCTTTGCCGTTTAAA 57.633 25.926 0.00 0.00 0.00 1.52
625 693 9.974750 CAAACTTATTTTCTTTGCCGTTTAAAA 57.025 25.926 0.00 0.00 0.00 1.52
626 694 9.976255 AAACTTATTTTCTTTGCCGTTTAAAAC 57.024 25.926 0.00 0.00 0.00 2.43
630 698 5.457650 TTTCTTTGCCGTTTAAAACTTGC 57.542 34.783 0.00 0.00 0.00 4.01
645 776 8.723942 TTAAAACTTGCAACATGTTTTACCAT 57.276 26.923 23.91 10.16 45.04 3.55
649 780 4.576216 TGCAACATGTTTTACCATTCGT 57.424 36.364 8.77 0.00 0.00 3.85
652 783 7.379098 TGCAACATGTTTTACCATTCGTATA 57.621 32.000 8.77 0.00 0.00 1.47
663 794 7.709269 TTACCATTCGTATACAAGAATCTGC 57.291 36.000 3.32 0.00 35.14 4.26
664 795 5.057149 ACCATTCGTATACAAGAATCTGCC 58.943 41.667 3.32 0.00 35.14 4.85
667 798 6.422223 CATTCGTATACAAGAATCTGCCAAC 58.578 40.000 3.32 0.00 35.14 3.77
685 816 6.065374 TGCCAACTGTTCTTTTTATAGACCA 58.935 36.000 0.00 0.00 0.00 4.02
705 836 0.040157 GCAGCACACGAATCTTTGCA 60.040 50.000 0.00 0.00 37.44 4.08
706 837 1.678360 CAGCACACGAATCTTTGCAC 58.322 50.000 0.00 0.00 37.44 4.57
707 838 1.002576 CAGCACACGAATCTTTGCACA 60.003 47.619 0.00 0.00 37.44 4.57
708 839 1.002468 AGCACACGAATCTTTGCACAC 60.002 47.619 0.00 0.00 37.44 3.82
709 840 1.662360 CACACGAATCTTTGCACACG 58.338 50.000 0.00 0.00 0.00 4.49
710 841 0.586319 ACACGAATCTTTGCACACGG 59.414 50.000 0.00 0.00 0.00 4.94
711 842 0.725784 CACGAATCTTTGCACACGGC 60.726 55.000 0.00 0.00 45.13 5.68
712 843 0.884704 ACGAATCTTTGCACACGGCT 60.885 50.000 0.00 0.00 45.15 5.52
713 844 0.179215 CGAATCTTTGCACACGGCTC 60.179 55.000 0.00 0.00 45.15 4.70
714 845 0.179215 GAATCTTTGCACACGGCTCG 60.179 55.000 0.00 0.00 45.15 5.03
715 846 1.577328 AATCTTTGCACACGGCTCGG 61.577 55.000 0.00 0.00 45.15 4.63
909 1056 3.917760 CCCACTCCCGATCGCCTC 61.918 72.222 10.32 0.00 0.00 4.70
968 1124 1.623311 CTTTTGTTTCCCCATCCCACC 59.377 52.381 0.00 0.00 0.00 4.61
1596 1765 2.359230 GTCAGCTGGCGCTTCCTT 60.359 61.111 15.13 0.00 46.47 3.36
1597 1766 2.046892 TCAGCTGGCGCTTCCTTC 60.047 61.111 15.13 0.00 46.47 3.46
1602 1771 2.034066 TGGCGCTTCCTTCCCTTG 59.966 61.111 7.64 0.00 35.26 3.61
1603 1772 3.443925 GGCGCTTCCTTCCCTTGC 61.444 66.667 7.64 0.00 0.00 4.01
1629 1798 4.455606 CCCTCTTCATCTTGATTGGTACC 58.544 47.826 4.43 4.43 0.00 3.34
1679 1848 2.380064 TTCCTGCAATGGGTTGAAGT 57.620 45.000 0.00 0.00 39.07 3.01
1754 1923 2.868964 TGGAGGAGCTACAAGGGTAT 57.131 50.000 0.00 0.00 0.00 2.73
1799 1968 5.060427 TCTGTCAGGAAAGATTTTGGGAA 57.940 39.130 0.00 0.00 0.00 3.97
1803 1972 5.768164 TGTCAGGAAAGATTTTGGGAAGTAC 59.232 40.000 0.00 0.00 0.00 2.73
1804 1973 6.004574 GTCAGGAAAGATTTTGGGAAGTACT 58.995 40.000 0.00 0.00 0.00 2.73
1805 1974 6.490381 GTCAGGAAAGATTTTGGGAAGTACTT 59.510 38.462 8.13 8.13 0.00 2.24
1806 1975 6.490040 TCAGGAAAGATTTTGGGAAGTACTTG 59.510 38.462 14.14 0.00 0.00 3.16
1822 1991 4.818546 AGTACTTGCATTATGATGGAGTGC 59.181 41.667 0.00 1.66 34.92 4.40
1926 2097 8.974060 TTACTAGGGAAAAGGCATTAATAGTG 57.026 34.615 0.00 0.00 0.00 2.74
1948 2119 8.571461 AGTGTCATTGATGATGTCAGTTTATT 57.429 30.769 0.00 0.00 39.30 1.40
1965 2136 9.515020 TCAGTTTATTGTTTGTTGTTGATCTTC 57.485 29.630 0.00 0.00 0.00 2.87
2007 2178 7.977490 GCTAGTATGGCAGAATTTTCTTTTC 57.023 36.000 0.00 0.00 44.73 2.29
2016 2187 5.754890 GCAGAATTTTCTTTTCATGGTGTGT 59.245 36.000 0.00 0.00 34.74 3.72
2083 2254 5.063060 GTGAGATTTCTTGATTGGCAATTGC 59.937 40.000 22.47 22.47 35.59 3.56
2137 2308 8.239998 GCTTCTTAGTTCTTACAAGATGCAATT 58.760 33.333 13.40 0.00 43.52 2.32
2141 2312 8.846943 TTAGTTCTTACAAGATGCAATTCTCA 57.153 30.769 0.00 0.00 34.49 3.27
2142 2313 7.375106 AGTTCTTACAAGATGCAATTCTCAG 57.625 36.000 0.00 0.00 34.49 3.35
2176 2347 3.646637 AGGTAGTAGTTGAGCAGGTTTGT 59.353 43.478 0.00 0.00 0.00 2.83
2178 2349 2.222027 AGTAGTTGAGCAGGTTTGTGC 58.778 47.619 0.00 0.00 44.35 4.57
2200 2371 3.625764 CGTCTTTTTCTCAGTTGGTGGAA 59.374 43.478 0.00 0.00 0.00 3.53
2241 2412 6.427853 TCTCATGTGGTTTCACTTTGATGTAG 59.572 38.462 0.00 0.00 43.94 2.74
2296 2467 8.543774 AGCAGACATTTCTCCTAATAGAAAAGA 58.456 33.333 8.15 0.00 45.83 2.52
2318 2489 1.133668 AGTTGCTCCTGCCAGTTTTCT 60.134 47.619 0.00 0.00 38.71 2.52
2327 2498 2.098614 TGCCAGTTTTCTTCACAGCAA 58.901 42.857 0.00 0.00 0.00 3.91
2328 2499 2.495270 TGCCAGTTTTCTTCACAGCAAA 59.505 40.909 0.00 0.00 0.00 3.68
2329 2500 3.056250 TGCCAGTTTTCTTCACAGCAAAA 60.056 39.130 0.00 0.00 0.00 2.44
2330 2501 3.932089 GCCAGTTTTCTTCACAGCAAAAA 59.068 39.130 0.00 0.00 0.00 1.94
2372 2543 6.264067 AGGTCCTATGAAATTATGAAAGCAGC 59.736 38.462 0.00 0.00 0.00 5.25
2373 2544 6.039717 GGTCCTATGAAATTATGAAAGCAGCA 59.960 38.462 0.00 0.00 0.00 4.41
2374 2545 7.137426 GTCCTATGAAATTATGAAAGCAGCAG 58.863 38.462 0.00 0.00 0.00 4.24
2410 2581 5.221303 CCAATTCAAGTTTCAGCAAGAGGAA 60.221 40.000 0.00 0.00 0.00 3.36
2458 2629 5.567138 AAAAGATAGAAATGCCCTTCACG 57.433 39.130 0.00 0.00 0.00 4.35
2465 2636 0.892755 AATGCCCTTCACGACGTAGA 59.107 50.000 0.00 0.00 0.00 2.59
2516 2693 9.651913 AGTGATCTTTCTATTCTGAACTTCTTC 57.348 33.333 0.00 0.00 0.00 2.87
2517 2694 8.878769 GTGATCTTTCTATTCTGAACTTCTTCC 58.121 37.037 0.00 0.00 0.00 3.46
2518 2695 8.820831 TGATCTTTCTATTCTGAACTTCTTCCT 58.179 33.333 0.00 0.00 0.00 3.36
2519 2696 9.665719 GATCTTTCTATTCTGAACTTCTTCCTT 57.334 33.333 0.00 0.00 0.00 3.36
2977 3512 1.408822 GCCAAAGTGGGTCTATGGGAG 60.409 57.143 0.00 0.00 38.19 4.30
3003 3538 7.422399 GTTATTTGGTGACTGTTGCTTAAAGA 58.578 34.615 0.00 0.00 0.00 2.52
3026 3561 6.480320 AGACAATCGATAAAGTGCCATCTTAC 59.520 38.462 0.00 0.00 0.00 2.34
3043 3578 9.855021 GCCATCTTACTTTAGCTTTTCAAATTA 57.145 29.630 0.00 0.00 0.00 1.40
3118 3671 4.122776 GCTTCTGTCTCTGAAACACTTCA 58.877 43.478 0.00 0.00 39.30 3.02
3136 3689 3.478857 TCACATTTCAGTTACACCGGT 57.521 42.857 0.00 0.00 0.00 5.28
3145 3698 1.975680 AGTTACACCGGTGAAGATGGT 59.024 47.619 40.21 18.83 36.10 3.55
3224 3777 3.322466 CCGAGGGCAAGGTGAGGT 61.322 66.667 0.00 0.00 0.00 3.85
3310 3863 2.743538 GAGCAGCACATCACGCCA 60.744 61.111 0.00 0.00 0.00 5.69
3313 3866 2.620112 GCAGCACATCACGCCAGTT 61.620 57.895 0.00 0.00 0.00 3.16
3496 4049 3.081409 ACCGGGGAGAACATCGGG 61.081 66.667 6.32 0.00 45.97 5.14
4298 4921 9.926158 ATGCAAATCAAGTTCAATACACAAATA 57.074 25.926 0.00 0.00 0.00 1.40
4462 5106 1.818060 CAACGGCATCTTCATGGGAAA 59.182 47.619 0.00 0.00 31.35 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 3.771577 AAAGGACTCGGTGAATTCTGT 57.228 42.857 7.05 0.00 0.00 3.41
98 99 1.574702 GGGCGAAAAAGGACTCGGTG 61.575 60.000 0.00 0.00 35.60 4.94
105 106 0.958091 CACATGTGGGCGAAAAAGGA 59.042 50.000 18.51 0.00 0.00 3.36
146 147 5.392165 CGCGGACATGAATTAAGGGTAAAAA 60.392 40.000 0.00 0.00 0.00 1.94
255 256 0.757561 CATGCCCATGCCATCTGGAA 60.758 55.000 0.00 0.00 35.70 3.53
256 257 1.152631 CATGCCCATGCCATCTGGA 60.153 57.895 0.00 0.00 35.70 3.86
311 319 4.664150 TCAAACCATTCCAAACTGAACC 57.336 40.909 0.00 0.00 0.00 3.62
351 367 8.719648 CCAAGCTACAGATTCTTCATTCATATC 58.280 37.037 0.00 0.00 0.00 1.63
352 368 8.216423 ACCAAGCTACAGATTCTTCATTCATAT 58.784 33.333 0.00 0.00 0.00 1.78
353 369 7.568349 ACCAAGCTACAGATTCTTCATTCATA 58.432 34.615 0.00 0.00 0.00 2.15
406 422 3.144506 AGCATATGGGATCGAAAAGCAG 58.855 45.455 4.56 0.00 0.00 4.24
412 428 3.239449 ACCACTAGCATATGGGATCGAA 58.761 45.455 4.56 0.00 40.59 3.71
413 429 2.889512 ACCACTAGCATATGGGATCGA 58.110 47.619 4.56 0.00 40.59 3.59
414 430 3.329386 CAACCACTAGCATATGGGATCG 58.671 50.000 4.56 0.00 40.59 3.69
423 439 0.679002 CTGGCAGCAACCACTAGCAT 60.679 55.000 0.00 0.00 35.33 3.79
425 441 2.042831 CCTGGCAGCAACCACTAGC 61.043 63.158 9.56 0.00 35.33 3.42
426 442 1.377725 CCCTGGCAGCAACCACTAG 60.378 63.158 9.56 0.00 35.33 2.57
427 443 0.838554 TACCCTGGCAGCAACCACTA 60.839 55.000 9.56 0.00 35.33 2.74
428 444 1.500783 ATACCCTGGCAGCAACCACT 61.501 55.000 9.56 0.00 35.33 4.00
429 445 0.611896 AATACCCTGGCAGCAACCAC 60.612 55.000 9.56 0.00 35.33 4.16
430 446 0.611618 CAATACCCTGGCAGCAACCA 60.612 55.000 9.56 0.00 38.29 3.67
431 447 0.611896 ACAATACCCTGGCAGCAACC 60.612 55.000 9.56 0.00 0.00 3.77
434 450 3.380471 AATAACAATACCCTGGCAGCA 57.620 42.857 9.56 0.00 0.00 4.41
436 452 4.142182 CCACAAATAACAATACCCTGGCAG 60.142 45.833 7.75 7.75 0.00 4.85
464 480 4.635223 GCAGAGAGGATGCAACATACATA 58.365 43.478 0.00 0.00 43.31 2.29
465 481 3.474600 GCAGAGAGGATGCAACATACAT 58.525 45.455 0.00 0.00 43.31 2.29
474 490 2.181521 GCAGCTGCAGAGAGGATGC 61.182 63.158 33.36 7.77 44.11 3.91
475 491 0.812014 CAGCAGCTGCAGAGAGGATG 60.812 60.000 38.24 21.92 45.16 3.51
477 493 1.190178 TTCAGCAGCTGCAGAGAGGA 61.190 55.000 38.24 19.23 45.16 3.71
478 494 0.107606 ATTCAGCAGCTGCAGAGAGG 60.108 55.000 38.24 20.03 45.16 3.69
498 528 2.029623 GATGGCCTCATGTTCATGCTT 58.970 47.619 3.32 0.00 32.98 3.91
500 530 0.672342 GGATGGCCTCATGTTCATGC 59.328 55.000 3.32 0.00 32.98 4.06
503 533 2.827322 CAAAAGGATGGCCTCATGTTCA 59.173 45.455 3.32 0.00 46.28 3.18
504 534 2.827921 ACAAAAGGATGGCCTCATGTTC 59.172 45.455 3.32 0.00 46.28 3.18
506 536 2.450476 GACAAAAGGATGGCCTCATGT 58.550 47.619 3.32 0.00 46.28 3.21
507 537 1.402968 CGACAAAAGGATGGCCTCATG 59.597 52.381 3.32 0.00 46.28 3.07
508 538 1.004745 ACGACAAAAGGATGGCCTCAT 59.995 47.619 3.32 0.00 46.28 2.90
509 539 0.400213 ACGACAAAAGGATGGCCTCA 59.600 50.000 3.32 0.00 46.28 3.86
510 540 1.534729 AACGACAAAAGGATGGCCTC 58.465 50.000 3.32 0.00 46.28 4.70
512 542 1.336795 CCAAACGACAAAAGGATGGCC 60.337 52.381 0.00 0.00 0.00 5.36
514 544 3.119495 GGATCCAAACGACAAAAGGATGG 60.119 47.826 6.95 0.00 39.10 3.51
515 545 3.119495 GGGATCCAAACGACAAAAGGATG 60.119 47.826 15.23 0.00 39.10 3.51
516 546 3.089284 GGGATCCAAACGACAAAAGGAT 58.911 45.455 15.23 0.00 41.56 3.24
517 547 2.107552 AGGGATCCAAACGACAAAAGGA 59.892 45.455 15.23 0.00 0.00 3.36
518 548 2.514803 AGGGATCCAAACGACAAAAGG 58.485 47.619 15.23 0.00 0.00 3.11
519 549 4.941263 TGATAGGGATCCAAACGACAAAAG 59.059 41.667 15.23 0.00 0.00 2.27
520 550 4.912586 TGATAGGGATCCAAACGACAAAA 58.087 39.130 15.23 0.00 0.00 2.44
522 552 3.118408 CCTGATAGGGATCCAAACGACAA 60.118 47.826 15.23 0.00 0.00 3.18
523 553 2.434336 CCTGATAGGGATCCAAACGACA 59.566 50.000 15.23 4.90 0.00 4.35
525 555 3.040655 TCCTGATAGGGATCCAAACGA 57.959 47.619 15.23 0.00 35.59 3.85
528 558 3.652869 GACCATCCTGATAGGGATCCAAA 59.347 47.826 15.23 0.08 43.55 3.28
530 560 2.456340 AGACCATCCTGATAGGGATCCA 59.544 50.000 15.23 0.00 43.55 3.41
531 561 3.103742 GAGACCATCCTGATAGGGATCC 58.896 54.545 1.92 1.92 43.55 3.36
532 562 3.513515 GTGAGACCATCCTGATAGGGATC 59.486 52.174 0.00 0.00 43.55 3.36
537 604 4.442612 CCAACAGTGAGACCATCCTGATAG 60.443 50.000 0.00 0.00 33.13 2.08
542 609 0.326264 GCCAACAGTGAGACCATCCT 59.674 55.000 0.00 0.00 0.00 3.24
544 611 0.320771 ACGCCAACAGTGAGACCATC 60.321 55.000 0.00 0.00 0.00 3.51
549 616 0.463654 AGCAAACGCCAACAGTGAGA 60.464 50.000 0.00 0.00 0.00 3.27
555 622 3.350377 GGCTAGCAAACGCCAACA 58.650 55.556 18.24 0.00 45.59 3.33
560 627 0.179137 GGGAAATGGCTAGCAAACGC 60.179 55.000 18.24 6.36 0.00 4.84
561 628 1.133025 CAGGGAAATGGCTAGCAAACG 59.867 52.381 18.24 0.00 0.00 3.60
563 630 1.185315 GCAGGGAAATGGCTAGCAAA 58.815 50.000 18.24 4.19 0.00 3.68
566 633 0.468771 ATGGCAGGGAAATGGCTAGC 60.469 55.000 6.04 6.04 45.51 3.42
569 636 2.062177 GCATGGCAGGGAAATGGCT 61.062 57.895 0.00 0.00 45.51 4.75
588 656 5.880887 AGAAAATAAGTTTGAGATCGGGGAC 59.119 40.000 0.00 0.00 0.00 4.46
589 657 6.062258 AGAAAATAAGTTTGAGATCGGGGA 57.938 37.500 0.00 0.00 0.00 4.81
592 660 6.528072 GGCAAAGAAAATAAGTTTGAGATCGG 59.472 38.462 0.00 0.00 33.78 4.18
593 661 6.249260 CGGCAAAGAAAATAAGTTTGAGATCG 59.751 38.462 0.00 0.00 33.78 3.69
594 662 7.084486 ACGGCAAAGAAAATAAGTTTGAGATC 58.916 34.615 0.00 0.00 33.78 2.75
595 663 6.981722 ACGGCAAAGAAAATAAGTTTGAGAT 58.018 32.000 0.00 0.00 33.78 2.75
596 664 6.385649 ACGGCAAAGAAAATAAGTTTGAGA 57.614 33.333 0.00 0.00 33.78 3.27
597 665 7.463469 AAACGGCAAAGAAAATAAGTTTGAG 57.537 32.000 0.00 0.00 33.78 3.02
599 667 9.974750 TTTTAAACGGCAAAGAAAATAAGTTTG 57.025 25.926 0.00 0.00 34.83 2.93
600 668 9.976255 GTTTTAAACGGCAAAGAAAATAAGTTT 57.024 25.926 0.00 0.00 35.23 2.66
601 669 9.373603 AGTTTTAAACGGCAAAGAAAATAAGTT 57.626 25.926 1.95 0.00 36.23 2.66
602 670 8.936070 AGTTTTAAACGGCAAAGAAAATAAGT 57.064 26.923 1.95 0.00 36.23 2.24
603 671 9.631639 CAAGTTTTAAACGGCAAAGAAAATAAG 57.368 29.630 1.95 0.00 36.23 1.73
605 673 7.277981 TGCAAGTTTTAAACGGCAAAGAAAATA 59.722 29.630 21.18 2.56 41.32 1.40
606 674 6.092807 TGCAAGTTTTAAACGGCAAAGAAAAT 59.907 30.769 21.18 0.00 41.32 1.82
607 675 5.408604 TGCAAGTTTTAAACGGCAAAGAAAA 59.591 32.000 21.18 3.66 41.32 2.29
608 676 4.929808 TGCAAGTTTTAAACGGCAAAGAAA 59.070 33.333 21.18 4.21 41.32 2.52
610 678 4.111375 TGCAAGTTTTAAACGGCAAAGA 57.889 36.364 21.18 5.04 41.32 2.52
611 679 4.849111 TTGCAAGTTTTAAACGGCAAAG 57.151 36.364 27.21 9.04 46.06 2.77
613 681 3.585862 TGTTGCAAGTTTTAAACGGCAA 58.414 36.364 26.33 26.33 46.49 4.52
614 682 3.232213 TGTTGCAAGTTTTAAACGGCA 57.768 38.095 20.15 20.15 42.10 5.69
615 683 3.553917 ACATGTTGCAAGTTTTAAACGGC 59.446 39.130 16.46 16.46 37.18 5.68
616 684 5.710613 AACATGTTGCAAGTTTTAAACGG 57.289 34.783 11.07 0.65 36.23 4.44
617 685 7.632897 GGTAAAACATGTTGCAAGTTTTAAACG 59.367 33.333 24.93 3.35 43.76 3.60
618 686 8.443937 TGGTAAAACATGTTGCAAGTTTTAAAC 58.556 29.630 24.93 21.63 43.76 2.01
622 690 7.465245 CGAATGGTAAAACATGTTGCAAGTTTT 60.465 33.333 23.32 23.32 43.96 2.43
623 691 6.019156 CGAATGGTAAAACATGTTGCAAGTTT 60.019 34.615 12.82 4.27 36.95 2.66
624 692 5.461737 CGAATGGTAAAACATGTTGCAAGTT 59.538 36.000 12.82 4.75 0.00 2.66
625 693 4.981674 CGAATGGTAAAACATGTTGCAAGT 59.018 37.500 12.82 0.00 0.00 3.16
626 694 4.981674 ACGAATGGTAAAACATGTTGCAAG 59.018 37.500 12.82 0.00 0.00 4.01
630 698 9.272901 CTTGTATACGAATGGTAAAACATGTTG 57.727 33.333 12.82 0.00 33.60 3.33
645 776 5.580691 CAGTTGGCAGATTCTTGTATACGAA 59.419 40.000 0.00 0.00 0.00 3.85
649 780 6.711277 AGAACAGTTGGCAGATTCTTGTATA 58.289 36.000 0.00 0.00 0.00 1.47
652 783 3.825328 AGAACAGTTGGCAGATTCTTGT 58.175 40.909 0.00 0.00 0.00 3.16
685 816 0.239347 GCAAAGATTCGTGTGCTGCT 59.761 50.000 0.00 0.00 34.13 4.24
705 836 4.363990 CTCACTGCCGAGCCGTGT 62.364 66.667 15.86 2.08 42.71 4.49
709 840 4.154347 CTCCCTCACTGCCGAGCC 62.154 72.222 0.00 0.00 0.00 4.70
710 841 3.071206 TCTCCCTCACTGCCGAGC 61.071 66.667 0.00 0.00 0.00 5.03
711 842 3.074999 GCTCTCCCTCACTGCCGAG 62.075 68.421 0.00 0.00 0.00 4.63
712 843 3.071206 GCTCTCCCTCACTGCCGA 61.071 66.667 0.00 0.00 0.00 5.54
713 844 4.154347 GGCTCTCCCTCACTGCCG 62.154 72.222 0.00 0.00 33.96 5.69
714 845 4.154347 CGGCTCTCCCTCACTGCC 62.154 72.222 0.00 0.00 40.14 4.85
715 846 3.363844 GACGGCTCTCCCTCACTGC 62.364 68.421 0.00 0.00 0.00 4.40
862 1009 2.294078 AAAGGGAGGGGACGAGCTG 61.294 63.158 0.00 0.00 0.00 4.24
863 1010 2.122954 AAAGGGAGGGGACGAGCT 59.877 61.111 0.00 0.00 0.00 4.09
864 1011 2.269241 CAAAGGGAGGGGACGAGC 59.731 66.667 0.00 0.00 0.00 5.03
1467 1636 1.003233 GAGGTCCTTGTCCCTGCAC 60.003 63.158 0.00 0.00 0.00 4.57
1471 1640 3.003763 GGCGAGGTCCTTGTCCCT 61.004 66.667 8.01 0.00 0.00 4.20
1596 1765 2.532715 AAGAGGGCAGGCAAGGGA 60.533 61.111 0.00 0.00 0.00 4.20
1597 1766 2.044551 GAAGAGGGCAGGCAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
1602 1771 0.254178 TCAAGATGAAGAGGGCAGGC 59.746 55.000 0.00 0.00 0.00 4.85
1603 1772 2.950309 CAATCAAGATGAAGAGGGCAGG 59.050 50.000 0.00 0.00 0.00 4.85
1662 1831 2.289010 GGAAACTTCAACCCATTGCAGG 60.289 50.000 0.00 0.00 33.79 4.85
1754 1923 8.428063 CAGAAATGGGCCATTTATTTATGGTAA 58.572 33.333 37.31 0.00 43.05 2.85
1799 1968 4.818546 GCACTCCATCATAATGCAAGTACT 59.181 41.667 0.00 0.00 36.30 2.73
1803 1972 3.881089 TCAGCACTCCATCATAATGCAAG 59.119 43.478 0.00 0.00 38.79 4.01
1804 1973 3.888583 TCAGCACTCCATCATAATGCAA 58.111 40.909 0.00 0.00 38.79 4.08
1805 1974 3.564053 TCAGCACTCCATCATAATGCA 57.436 42.857 0.00 0.00 38.79 3.96
1806 1975 4.999311 TGTATCAGCACTCCATCATAATGC 59.001 41.667 0.00 0.00 36.52 3.56
1822 1991 3.555547 TCAACCGAATCGCAATGTATCAG 59.444 43.478 0.00 0.00 0.00 2.90
1926 2097 9.630098 AAACAATAAACTGACATCATCAATGAC 57.370 29.630 0.00 0.00 40.03 3.06
2007 2178 4.400251 AGATTTTGCCATCTACACACCATG 59.600 41.667 0.00 0.00 31.25 3.66
2039 2210 4.022068 TCACCAAGCAGCAAGATAAAAAGG 60.022 41.667 0.00 0.00 0.00 3.11
2040 2211 5.048504 TCTCACCAAGCAGCAAGATAAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
2083 2254 2.049802 CCAAGCAAGCAAGCACCG 60.050 61.111 3.19 0.00 36.85 4.94
2141 2312 6.948886 TCAACTACTACCTCAGAATTCAGACT 59.051 38.462 8.44 0.00 0.00 3.24
2142 2313 7.159322 TCAACTACTACCTCAGAATTCAGAC 57.841 40.000 8.44 0.00 0.00 3.51
2176 2347 2.354510 CACCAACTGAGAAAAAGACGCA 59.645 45.455 0.00 0.00 0.00 5.24
2178 2349 3.202906 TCCACCAACTGAGAAAAAGACG 58.797 45.455 0.00 0.00 0.00 4.18
2200 2371 5.809562 CACATGAGAAACTTTAGCTCGAGAT 59.190 40.000 18.75 13.81 0.00 2.75
2241 2412 2.838202 TCCAATCTAGGAACCACTGGAC 59.162 50.000 0.71 0.00 33.93 4.02
2296 2467 0.106519 AAACTGGCAGGAGCAACTGT 60.107 50.000 20.34 0.00 44.61 3.55
2372 2543 4.517952 TGAATTGGGTTGTTATGCACTG 57.482 40.909 0.00 0.00 0.00 3.66
2373 2544 4.588528 ACTTGAATTGGGTTGTTATGCACT 59.411 37.500 0.00 0.00 0.00 4.40
2374 2545 4.881920 ACTTGAATTGGGTTGTTATGCAC 58.118 39.130 0.00 0.00 0.00 4.57
2440 2611 2.540101 CGTCGTGAAGGGCATTTCTATC 59.460 50.000 0.00 0.00 0.00 2.08
2441 2612 2.093658 ACGTCGTGAAGGGCATTTCTAT 60.094 45.455 0.00 0.00 0.00 1.98
2450 2621 6.657836 ATAAAAATTCTACGTCGTGAAGGG 57.342 37.500 8.47 0.00 0.00 3.95
2465 2636 8.608185 TTCCCCTGCAATCTAGAATAAAAATT 57.392 30.769 0.00 0.00 0.00 1.82
2484 2657 5.966935 TCAGAATAGAAAGATCACTTCCCCT 59.033 40.000 0.00 0.00 35.05 4.79
2516 2693 5.659440 AAACCACATAAATAGTGCCAAGG 57.341 39.130 0.00 0.00 35.69 3.61
2517 2694 6.454795 ACAAAACCACATAAATAGTGCCAAG 58.545 36.000 0.00 0.00 35.69 3.61
2518 2695 6.412362 ACAAAACCACATAAATAGTGCCAA 57.588 33.333 0.00 0.00 35.69 4.52
2519 2696 5.335269 CGACAAAACCACATAAATAGTGCCA 60.335 40.000 0.00 0.00 35.69 4.92
2929 3463 7.147976 GCCAGATTGAACAGTAAAGTGATTTT 58.852 34.615 0.00 0.00 0.00 1.82
2977 3512 4.584327 AAGCAACAGTCACCAAATAACC 57.416 40.909 0.00 0.00 0.00 2.85
3003 3538 6.349300 AGTAAGATGGCACTTTATCGATTGT 58.651 36.000 1.71 0.00 0.00 2.71
3136 3689 7.255590 GGAACAGAGATTTCAAAACCATCTTCA 60.256 37.037 0.00 0.00 0.00 3.02
4298 4921 4.003648 GGACGAGGAATGATGTGTCTTTT 58.996 43.478 0.00 0.00 0.00 2.27
4621 5271 2.109126 GCATGGGTGACTTCGGAGC 61.109 63.158 0.00 0.00 0.00 4.70
4630 5280 2.359797 CATGGGTGGCATGGGTGA 59.640 61.111 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.