Multiple sequence alignment - TraesCS2D01G467800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467800 chr2D 100.000 4164 0 0 1 4164 572783070 572787233 0.000000e+00 7690.0
1 TraesCS2D01G467800 chr2A 89.384 3523 178 53 157 3582 711973183 711976606 0.000000e+00 4253.0
2 TraesCS2D01G467800 chr2A 82.222 450 27 28 3720 4144 711976833 711977254 5.160000e-89 339.0
3 TraesCS2D01G467800 chr2A 95.745 94 4 0 53 146 425756429 425756336 7.210000e-33 152.0
4 TraesCS2D01G467800 chr2A 89.381 113 9 1 53 165 726457801 726457910 5.610000e-29 139.0
5 TraesCS2D01G467800 chr2B 90.061 2928 189 41 497 3383 688456473 688459339 0.000000e+00 3701.0
6 TraesCS2D01G467800 chr2B 87.363 546 49 14 964 1502 696856743 696857275 3.560000e-170 608.0
7 TraesCS2D01G467800 chr2B 87.692 455 30 14 3716 4164 688459748 688460182 1.340000e-139 507.0
8 TraesCS2D01G467800 chr2B 85.484 310 29 5 157 466 688456184 688456477 4.040000e-80 309.0
9 TraesCS2D01G467800 chr2B 81.379 145 20 5 170 312 654656640 654656501 1.220000e-20 111.0
10 TraesCS2D01G467800 chr2B 81.379 145 20 5 170 312 654684912 654684773 1.220000e-20 111.0
11 TraesCS2D01G467800 chr2B 81.379 145 20 5 170 312 654706746 654706607 1.220000e-20 111.0
12 TraesCS2D01G467800 chr2B 80.690 145 20 6 170 312 654735671 654735533 5.690000e-19 106.0
13 TraesCS2D01G467800 chr3A 88.321 548 46 12 961 1502 703852648 703852113 3.510000e-180 641.0
14 TraesCS2D01G467800 chr3A 86.679 548 54 13 961 1502 58077477 58076943 1.290000e-164 590.0
15 TraesCS2D01G467800 chr3A 86.679 548 54 13 961 1502 171151054 171151588 1.290000e-164 590.0
16 TraesCS2D01G467800 chr6D 84.977 659 57 19 961 1591 150885755 150885111 7.600000e-177 630.0
17 TraesCS2D01G467800 chr6D 93.814 97 6 0 53 149 77671339 77671435 3.350000e-31 147.0
18 TraesCS2D01G467800 chr7D 87.203 547 53 12 961 1502 180440546 180441080 1.280000e-169 606.0
19 TraesCS2D01G467800 chr1A 87.226 548 50 14 961 1502 67961321 67960788 1.280000e-169 606.0
20 TraesCS2D01G467800 chr4A 92.661 109 8 0 53 161 215350711 215350819 1.550000e-34 158.0
21 TraesCS2D01G467800 chr4A 93.137 102 7 0 59 160 650392202 650392101 2.590000e-32 150.0
22 TraesCS2D01G467800 chr5B 92.453 106 7 1 53 158 71051486 71051590 2.590000e-32 150.0
23 TraesCS2D01G467800 chr1D 89.167 120 7 4 53 170 466377115 466377230 1.210000e-30 145.0
24 TraesCS2D01G467800 chr1D 89.286 112 10 2 53 163 209986051 209985941 5.610000e-29 139.0
25 TraesCS2D01G467800 chr6A 89.908 109 7 2 53 160 373653950 373653845 2.020000e-28 137.0
26 TraesCS2D01G467800 chrUn 81.379 145 20 5 170 312 248130075 248129936 1.220000e-20 111.0
27 TraesCS2D01G467800 chr5A 98.000 50 1 0 1 50 489802866 489802915 2.060000e-13 87.9
28 TraesCS2D01G467800 chr1B 100.000 28 0 0 327 354 301815487 301815514 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467800 chr2D 572783070 572787233 4163 False 7690.000000 7690 100.000000 1 4164 1 chr2D.!!$F1 4163
1 TraesCS2D01G467800 chr2A 711973183 711977254 4071 False 2296.000000 4253 85.803000 157 4144 2 chr2A.!!$F2 3987
2 TraesCS2D01G467800 chr2B 688456184 688460182 3998 False 1505.666667 3701 87.745667 157 4164 3 chr2B.!!$F2 4007
3 TraesCS2D01G467800 chr2B 696856743 696857275 532 False 608.000000 608 87.363000 964 1502 1 chr2B.!!$F1 538
4 TraesCS2D01G467800 chr3A 703852113 703852648 535 True 641.000000 641 88.321000 961 1502 1 chr3A.!!$R2 541
5 TraesCS2D01G467800 chr3A 58076943 58077477 534 True 590.000000 590 86.679000 961 1502 1 chr3A.!!$R1 541
6 TraesCS2D01G467800 chr3A 171151054 171151588 534 False 590.000000 590 86.679000 961 1502 1 chr3A.!!$F1 541
7 TraesCS2D01G467800 chr6D 150885111 150885755 644 True 630.000000 630 84.977000 961 1591 1 chr6D.!!$R1 630
8 TraesCS2D01G467800 chr7D 180440546 180441080 534 False 606.000000 606 87.203000 961 1502 1 chr7D.!!$F1 541
9 TraesCS2D01G467800 chr1A 67960788 67961321 533 True 606.000000 606 87.226000 961 1502 1 chr1A.!!$R1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.035439 GGAAGGGCAGTGGATCGAAA 60.035 55.0 0.00 0.0 0.00 3.46 F
496 511 0.041238 TGACGGTCCTCTCTTCCCAT 59.959 55.0 5.55 0.0 0.00 4.00 F
1381 1452 0.323302 TTCGGCACTATGGCTGTTGA 59.677 50.0 0.64 0.0 41.25 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1665 1761 0.987613 TGCATATCCCCCAGCACTGA 60.988 55.000 0.0 0.0 31.05 3.41 R
1816 1913 2.104963 CCTCTTCCCACTGCCCTATTAC 59.895 54.545 0.0 0.0 0.00 1.89 R
3339 3469 0.757561 CATGCCCATGCCATCTGGAA 60.758 55.000 0.0 0.0 35.70 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.590104 AGCCACAATTTATTTTTCGTTGC 57.410 34.783 0.00 0.00 0.00 4.17
23 24 4.149747 AGCCACAATTTATTTTTCGTTGCG 59.850 37.500 0.00 0.00 0.00 4.85
24 25 4.665394 GCCACAATTTATTTTTCGTTGCGG 60.665 41.667 0.00 0.00 0.00 5.69
25 26 4.681942 CCACAATTTATTTTTCGTTGCGGA 59.318 37.500 0.00 0.00 0.00 5.54
26 27 5.387958 CCACAATTTATTTTTCGTTGCGGAC 60.388 40.000 0.00 0.00 0.00 4.79
36 37 4.697756 TTGCGGACGGAAGGGCAG 62.698 66.667 0.00 0.00 37.26 4.85
39 40 4.760047 CGGACGGAAGGGCAGTGG 62.760 72.222 0.00 0.00 0.00 4.00
40 41 3.319198 GGACGGAAGGGCAGTGGA 61.319 66.667 0.00 0.00 0.00 4.02
41 42 2.670148 GGACGGAAGGGCAGTGGAT 61.670 63.158 0.00 0.00 0.00 3.41
42 43 1.153349 GACGGAAGGGCAGTGGATC 60.153 63.158 0.00 0.00 0.00 3.36
43 44 2.202932 CGGAAGGGCAGTGGATCG 60.203 66.667 0.00 0.00 0.00 3.69
44 45 2.721167 CGGAAGGGCAGTGGATCGA 61.721 63.158 0.00 0.00 0.00 3.59
45 46 1.602237 GGAAGGGCAGTGGATCGAA 59.398 57.895 0.00 0.00 0.00 3.71
46 47 0.035439 GGAAGGGCAGTGGATCGAAA 60.035 55.000 0.00 0.00 0.00 3.46
47 48 1.087501 GAAGGGCAGTGGATCGAAAC 58.912 55.000 0.00 0.00 0.00 2.78
48 49 0.673644 AAGGGCAGTGGATCGAAACG 60.674 55.000 0.00 0.00 0.00 3.60
49 50 1.375523 GGGCAGTGGATCGAAACGT 60.376 57.895 0.00 0.00 0.00 3.99
50 51 0.953960 GGGCAGTGGATCGAAACGTT 60.954 55.000 0.00 0.00 0.00 3.99
51 52 0.872388 GGCAGTGGATCGAAACGTTT 59.128 50.000 14.57 14.57 0.00 3.60
52 53 1.265905 GGCAGTGGATCGAAACGTTTT 59.734 47.619 15.89 0.00 0.00 2.43
53 54 2.287368 GGCAGTGGATCGAAACGTTTTT 60.287 45.455 15.89 3.37 0.00 1.94
75 76 6.889019 TTTTGCCTAAACAAACCGTAAAAG 57.111 33.333 0.00 0.00 39.18 2.27
76 77 3.967401 TGCCTAAACAAACCGTAAAAGC 58.033 40.909 0.00 0.00 0.00 3.51
77 78 2.975193 GCCTAAACAAACCGTAAAAGCG 59.025 45.455 0.00 0.00 0.00 4.68
78 79 3.548616 GCCTAAACAAACCGTAAAAGCGT 60.549 43.478 0.00 0.00 0.00 5.07
79 80 4.319405 GCCTAAACAAACCGTAAAAGCGTA 60.319 41.667 0.00 0.00 0.00 4.42
80 81 5.617529 GCCTAAACAAACCGTAAAAGCGTAT 60.618 40.000 0.00 0.00 0.00 3.06
81 82 6.372981 CCTAAACAAACCGTAAAAGCGTATT 58.627 36.000 0.00 0.00 0.00 1.89
82 83 7.517321 CCTAAACAAACCGTAAAAGCGTATTA 58.483 34.615 0.00 0.00 0.00 0.98
83 84 8.177013 CCTAAACAAACCGTAAAAGCGTATTAT 58.823 33.333 0.00 0.00 0.00 1.28
84 85 7.784790 AAACAAACCGTAAAAGCGTATTATG 57.215 32.000 0.00 0.00 0.00 1.90
85 86 6.724694 ACAAACCGTAAAAGCGTATTATGA 57.275 33.333 0.00 0.00 0.00 2.15
86 87 6.536688 ACAAACCGTAAAAGCGTATTATGAC 58.463 36.000 0.00 0.00 0.00 3.06
87 88 6.147492 ACAAACCGTAAAAGCGTATTATGACA 59.853 34.615 0.00 0.00 0.00 3.58
88 89 6.913873 AACCGTAAAAGCGTATTATGACAT 57.086 33.333 0.00 0.00 0.00 3.06
89 90 6.913873 ACCGTAAAAGCGTATTATGACATT 57.086 33.333 0.00 0.00 0.00 2.71
90 91 8.422973 AACCGTAAAAGCGTATTATGACATTA 57.577 30.769 0.00 0.00 0.00 1.90
91 92 8.068893 ACCGTAAAAGCGTATTATGACATTAG 57.931 34.615 0.00 0.00 0.00 1.73
92 93 7.922278 ACCGTAAAAGCGTATTATGACATTAGA 59.078 33.333 0.00 0.00 0.00 2.10
93 94 8.757789 CCGTAAAAGCGTATTATGACATTAGAA 58.242 33.333 0.00 0.00 0.00 2.10
94 95 9.779237 CGTAAAAGCGTATTATGACATTAGAAG 57.221 33.333 0.00 0.00 0.00 2.85
99 100 8.077836 AGCGTATTATGACATTAGAAGAAAGC 57.922 34.615 0.00 0.00 0.00 3.51
100 101 7.004225 GCGTATTATGACATTAGAAGAAAGCG 58.996 38.462 0.00 0.00 0.00 4.68
101 102 7.306632 GCGTATTATGACATTAGAAGAAAGCGT 60.307 37.037 0.00 0.00 0.00 5.07
102 103 9.177304 CGTATTATGACATTAGAAGAAAGCGTA 57.823 33.333 0.00 0.00 0.00 4.42
106 107 7.849804 ATGACATTAGAAGAAAGCGTATTGT 57.150 32.000 0.00 0.00 0.00 2.71
107 108 7.060600 TGACATTAGAAGAAAGCGTATTGTG 57.939 36.000 0.00 0.00 0.00 3.33
108 109 6.871492 TGACATTAGAAGAAAGCGTATTGTGA 59.129 34.615 0.00 0.00 0.00 3.58
109 110 7.061752 ACATTAGAAGAAAGCGTATTGTGAC 57.938 36.000 0.00 0.00 0.00 3.67
110 111 5.756950 TTAGAAGAAAGCGTATTGTGACG 57.243 39.130 0.00 0.00 45.70 4.35
111 112 2.993899 AGAAGAAAGCGTATTGTGACGG 59.006 45.455 0.00 0.00 43.13 4.79
116 117 3.941194 GCGTATTGTGACGGTGAAC 57.059 52.632 0.00 0.00 43.13 3.18
117 118 0.441145 GCGTATTGTGACGGTGAACC 59.559 55.000 0.00 0.00 43.13 3.62
118 119 1.073177 CGTATTGTGACGGTGAACCC 58.927 55.000 0.00 0.00 39.19 4.11
119 120 1.605968 CGTATTGTGACGGTGAACCCA 60.606 52.381 0.00 0.00 39.19 4.51
120 121 2.496111 GTATTGTGACGGTGAACCCAA 58.504 47.619 0.00 0.00 0.00 4.12
121 122 2.060050 ATTGTGACGGTGAACCCAAA 57.940 45.000 0.00 0.00 0.00 3.28
122 123 1.384525 TTGTGACGGTGAACCCAAAG 58.615 50.000 0.00 0.00 0.00 2.77
123 124 0.542333 TGTGACGGTGAACCCAAAGA 59.458 50.000 0.00 0.00 0.00 2.52
124 125 1.226746 GTGACGGTGAACCCAAAGAG 58.773 55.000 0.00 0.00 0.00 2.85
125 126 0.834612 TGACGGTGAACCCAAAGAGT 59.165 50.000 0.00 0.00 0.00 3.24
126 127 1.202604 TGACGGTGAACCCAAAGAGTC 60.203 52.381 0.00 0.00 0.00 3.36
127 128 0.834612 ACGGTGAACCCAAAGAGTCA 59.165 50.000 0.00 0.00 0.00 3.41
128 129 1.210967 ACGGTGAACCCAAAGAGTCAA 59.789 47.619 0.00 0.00 0.00 3.18
129 130 2.158667 ACGGTGAACCCAAAGAGTCAAT 60.159 45.455 0.00 0.00 0.00 2.57
130 131 2.484264 CGGTGAACCCAAAGAGTCAATC 59.516 50.000 0.00 0.00 0.00 2.67
131 132 2.820197 GGTGAACCCAAAGAGTCAATCC 59.180 50.000 0.00 0.00 0.00 3.01
132 133 2.484264 GTGAACCCAAAGAGTCAATCCG 59.516 50.000 0.00 0.00 0.00 4.18
133 134 2.105821 TGAACCCAAAGAGTCAATCCGT 59.894 45.455 0.00 0.00 0.00 4.69
134 135 2.185004 ACCCAAAGAGTCAATCCGTG 57.815 50.000 0.00 0.00 0.00 4.94
135 136 0.804989 CCCAAAGAGTCAATCCGTGC 59.195 55.000 0.00 0.00 0.00 5.34
136 137 1.611673 CCCAAAGAGTCAATCCGTGCT 60.612 52.381 0.00 0.00 0.00 4.40
137 138 2.154462 CCAAAGAGTCAATCCGTGCTT 58.846 47.619 0.00 0.00 0.00 3.91
138 139 2.554032 CCAAAGAGTCAATCCGTGCTTT 59.446 45.455 0.00 0.00 0.00 3.51
139 140 3.751175 CCAAAGAGTCAATCCGTGCTTTA 59.249 43.478 0.00 0.00 0.00 1.85
140 141 4.396166 CCAAAGAGTCAATCCGTGCTTTAT 59.604 41.667 0.00 0.00 0.00 1.40
141 142 5.106157 CCAAAGAGTCAATCCGTGCTTTATT 60.106 40.000 0.00 0.00 0.00 1.40
142 143 6.093495 CCAAAGAGTCAATCCGTGCTTTATTA 59.907 38.462 0.00 0.00 0.00 0.98
143 144 7.201732 CCAAAGAGTCAATCCGTGCTTTATTAT 60.202 37.037 0.00 0.00 0.00 1.28
144 145 7.865706 AAGAGTCAATCCGTGCTTTATTATT 57.134 32.000 0.00 0.00 0.00 1.40
145 146 8.958119 AAGAGTCAATCCGTGCTTTATTATTA 57.042 30.769 0.00 0.00 0.00 0.98
146 147 9.561069 AAGAGTCAATCCGTGCTTTATTATTAT 57.439 29.630 0.00 0.00 0.00 1.28
147 148 9.561069 AGAGTCAATCCGTGCTTTATTATTATT 57.439 29.630 0.00 0.00 0.00 1.40
151 152 9.226606 TCAATCCGTGCTTTATTATTATTAGGG 57.773 33.333 0.00 0.00 0.00 3.53
152 153 9.226606 CAATCCGTGCTTTATTATTATTAGGGA 57.773 33.333 0.00 0.00 0.00 4.20
153 154 9.975218 AATCCGTGCTTTATTATTATTAGGGAT 57.025 29.630 0.00 0.00 34.22 3.85
192 195 7.971455 ACATTAGCTTTATCGTAAGTCAAACC 58.029 34.615 0.00 0.00 39.48 3.27
197 200 6.369065 AGCTTTATCGTAAGTCAAACCTTCTG 59.631 38.462 0.00 0.00 39.48 3.02
466 481 2.882324 CGTTTCTGCCTCTCTTCCTAC 58.118 52.381 0.00 0.00 0.00 3.18
494 509 0.974383 TTTGACGGTCCTCTCTTCCC 59.026 55.000 5.55 0.00 0.00 3.97
496 511 0.041238 TGACGGTCCTCTCTTCCCAT 59.959 55.000 5.55 0.00 0.00 4.00
497 512 0.747852 GACGGTCCTCTCTTCCCATC 59.252 60.000 0.00 0.00 0.00 3.51
499 514 1.403687 CGGTCCTCTCTTCCCATCCC 61.404 65.000 0.00 0.00 0.00 3.85
560 600 1.903404 CCACAAGTTCACAGCCCCC 60.903 63.158 0.00 0.00 0.00 5.40
689 748 3.132139 CGGAGCCGACGAAGAGGA 61.132 66.667 2.00 0.00 42.83 3.71
690 749 2.802106 GGAGCCGACGAAGAGGAG 59.198 66.667 0.00 0.00 0.00 3.69
756 818 3.957435 ATCGCGAGACCACCCTCCA 62.957 63.158 16.66 0.00 46.97 3.86
798 860 1.686052 GATGCTCTGTTCCTCCGATCT 59.314 52.381 0.00 0.00 0.00 2.75
810 872 2.096406 CGATCTGCGCCGTGTTTG 59.904 61.111 4.18 0.00 0.00 2.93
817 879 3.361158 CGCCGTGTTTGATGCCCA 61.361 61.111 0.00 0.00 0.00 5.36
843 905 2.220761 GAGAATCGCGATCTGGTGC 58.779 57.895 23.92 0.00 0.00 5.01
862 924 4.035843 AGGAACTCGGCGGAGAAT 57.964 55.556 26.25 14.77 43.27 2.40
877 939 3.669251 GAGAATTAGATCTCCCCGTGG 57.331 52.381 0.00 0.00 39.98 4.94
897 959 3.831911 TGGTTTTGCCCTAGAATTTGGAG 59.168 43.478 0.00 0.00 36.04 3.86
903 965 2.749800 GCCCTAGAATTTGGAGCCGATT 60.750 50.000 0.00 0.00 0.00 3.34
904 966 3.496160 GCCCTAGAATTTGGAGCCGATTA 60.496 47.826 0.00 0.00 0.00 1.75
921 983 1.272807 TTAGGCCGCTTCCACTAGTT 58.727 50.000 0.00 0.00 0.00 2.24
1133 1200 1.395954 CACCATGAAGCGATGTGAGTG 59.604 52.381 0.00 0.00 0.00 3.51
1154 1221 1.208293 CTCTCCCCTTACAGCTGGTTC 59.792 57.143 19.93 0.00 0.00 3.62
1369 1440 3.730761 CTGCTGCTGGTTCGGCAC 61.731 66.667 0.00 0.00 42.86 5.01
1381 1452 0.323302 TTCGGCACTATGGCTGTTGA 59.677 50.000 0.64 0.00 41.25 3.18
1452 1524 3.763897 GTCATTGTCATTAGCCCCTGTTT 59.236 43.478 0.00 0.00 0.00 2.83
1456 1528 1.892474 GTCATTAGCCCCTGTTTTGCA 59.108 47.619 0.00 0.00 0.00 4.08
1510 1604 6.072452 GCATATTTCCTCTGTATAGGTTTGCC 60.072 42.308 0.00 0.00 37.91 4.52
1553 1649 4.396790 TGTTGGTTGTTACTTCCAGTTGAC 59.603 41.667 0.64 0.00 32.63 3.18
1581 1677 5.931724 GGTTTGGTTGGTATTGAGAAATTGG 59.068 40.000 0.00 0.00 0.00 3.16
1591 1687 7.037153 TGGTATTGAGAAATTGGTAGGTAGGTT 60.037 37.037 0.00 0.00 0.00 3.50
1627 1723 8.397957 AGTGACCTGAATATGTAGAGAGGATAT 58.602 37.037 0.00 0.00 0.00 1.63
1665 1761 3.923017 TGTGTCATATCGCGATCATCT 57.077 42.857 27.45 4.26 0.00 2.90
1693 1789 4.536765 CTGGGGGATATGCAGTAACTTTT 58.463 43.478 0.00 0.00 0.00 2.27
1782 1878 7.394816 AGTGGTACAAGTCTTTTATGCAGTAT 58.605 34.615 0.00 0.00 44.16 2.12
1783 1879 7.883311 AGTGGTACAAGTCTTTTATGCAGTATT 59.117 33.333 0.00 0.00 44.16 1.89
1814 1911 1.347707 TGCTACAGCTGTAGGCAAACT 59.652 47.619 40.83 13.51 46.07 2.66
1815 1912 2.565391 TGCTACAGCTGTAGGCAAACTA 59.435 45.455 40.83 21.40 46.07 2.24
1816 1913 3.190874 GCTACAGCTGTAGGCAAACTAG 58.809 50.000 40.83 24.22 46.07 2.57
1854 1951 1.494721 GAGGGGGCCATCACTAATGAA 59.505 52.381 4.39 0.00 38.69 2.57
1867 1964 8.781196 CCATCACTAATGAATTGTCCTGATTAG 58.219 37.037 0.00 0.00 38.69 1.73
1884 1981 9.547753 TCCTGATTAGCAATCTTATTACTGAAC 57.452 33.333 9.34 0.00 38.72 3.18
1894 1991 5.416947 TCTTATTACTGAACGGGAAAGAGC 58.583 41.667 0.00 0.00 0.00 4.09
1907 2004 4.505808 GGGAAAGAGCTAGAACTTACCAC 58.494 47.826 0.00 0.00 0.00 4.16
2120 2218 1.136891 TCATGTCGTAGCACCTCATGG 59.863 52.381 0.00 0.00 37.20 3.66
2138 2236 6.892456 CCTCATGGTATCACCTTATCTAGCTA 59.108 42.308 0.00 0.00 39.58 3.32
2200 2298 1.864565 TATGCATCGATGTGAACCCG 58.135 50.000 25.47 0.00 0.00 5.28
2220 2334 2.346803 GTGCATTTAAGCTCTCCGACA 58.653 47.619 0.00 0.00 34.99 4.35
2227 2341 4.806342 TTAAGCTCTCCGACAAAACAAC 57.194 40.909 0.00 0.00 0.00 3.32
2289 2407 5.865085 TCTGTGCAACCTGTCTTAGTAATT 58.135 37.500 0.00 0.00 34.36 1.40
2291 2409 7.620880 TCTGTGCAACCTGTCTTAGTAATTAT 58.379 34.615 0.00 0.00 34.36 1.28
2359 2478 8.165267 TCCTAATTCCCATGACCTAAGTTTTA 57.835 34.615 0.00 0.00 0.00 1.52
2367 2486 7.881232 TCCCATGACCTAAGTTTTACTAAACAG 59.119 37.037 0.00 0.00 44.88 3.16
2428 2547 1.357137 TGAAGTGGTGATGTAGGGCA 58.643 50.000 0.00 0.00 0.00 5.36
2663 2786 2.956132 TCAAATTTCTGCAACTCCCCA 58.044 42.857 0.00 0.00 0.00 4.96
2732 2856 7.094762 GGATAAATATGTGCACTTAGGGCTTAC 60.095 40.741 19.41 0.00 0.00 2.34
2812 2936 5.672421 ATGTCATCAGAGAACTGTCATCA 57.328 39.130 0.00 0.00 43.81 3.07
2814 2938 4.768968 TGTCATCAGAGAACTGTCATCAGA 59.231 41.667 2.17 0.00 43.76 3.27
2815 2939 5.105837 TGTCATCAGAGAACTGTCATCAGAG 60.106 44.000 2.17 0.00 43.76 3.35
2817 2941 5.713861 TCATCAGAGAACTGTCATCAGAGAA 59.286 40.000 2.17 0.00 43.76 2.87
2818 2942 5.384063 TCAGAGAACTGTCATCAGAGAAC 57.616 43.478 2.17 0.00 43.76 3.01
2819 2943 5.076182 TCAGAGAACTGTCATCAGAGAACT 58.924 41.667 2.17 0.00 43.76 3.01
2820 2944 5.048154 TCAGAGAACTGTCATCAGAGAACTG 60.048 44.000 2.17 0.00 43.76 3.16
2821 2945 4.832266 AGAGAACTGTCATCAGAGAACTGT 59.168 41.667 2.17 0.00 43.76 3.55
2822 2946 5.048083 AGAGAACTGTCATCAGAGAACTGTC 60.048 44.000 2.17 0.00 43.76 3.51
2823 2947 4.586421 AGAACTGTCATCAGAGAACTGTCA 59.414 41.667 2.17 0.00 43.76 3.58
2824 2948 5.245751 AGAACTGTCATCAGAGAACTGTCAT 59.754 40.000 2.17 0.00 43.76 3.06
2825 2949 5.070770 ACTGTCATCAGAGAACTGTCATC 57.929 43.478 2.17 0.00 43.76 2.92
2826 2950 4.771577 ACTGTCATCAGAGAACTGTCATCT 59.228 41.667 2.17 0.00 43.76 2.90
2827 2951 5.069501 TGTCATCAGAGAACTGTCATCTG 57.930 43.478 13.27 13.27 43.81 2.90
2828 2952 3.864583 GTCATCAGAGAACTGTCATCTGC 59.135 47.826 14.21 1.59 43.81 4.26
2829 2953 3.512724 TCATCAGAGAACTGTCATCTGCA 59.487 43.478 14.21 0.00 43.81 4.41
2830 2954 4.020839 TCATCAGAGAACTGTCATCTGCAA 60.021 41.667 14.21 3.03 43.81 4.08
2831 2955 4.548451 TCAGAGAACTGTCATCTGCAAT 57.452 40.909 14.21 0.00 43.81 3.56
2851 2975 5.408299 GCAATTTGTTTTGGTTATGAGGACC 59.592 40.000 0.00 0.00 37.69 4.46
2872 2997 8.893727 AGGACCGAGACTTATTTTATTTTCATG 58.106 33.333 0.00 0.00 0.00 3.07
2873 2998 8.129211 GGACCGAGACTTATTTTATTTTCATGG 58.871 37.037 0.00 0.00 0.00 3.66
2874 2999 8.575649 ACCGAGACTTATTTTATTTTCATGGT 57.424 30.769 0.00 0.00 0.00 3.55
2875 3000 8.458843 ACCGAGACTTATTTTATTTTCATGGTG 58.541 33.333 0.00 0.00 0.00 4.17
2876 3001 7.915397 CCGAGACTTATTTTATTTTCATGGTGG 59.085 37.037 0.00 0.00 0.00 4.61
2877 3002 7.432252 CGAGACTTATTTTATTTTCATGGTGGC 59.568 37.037 0.00 0.00 0.00 5.01
2878 3003 8.133024 AGACTTATTTTATTTTCATGGTGGCA 57.867 30.769 0.00 0.00 0.00 4.92
2885 3010 7.897575 TTTATTTTCATGGTGGCATAAACAC 57.102 32.000 0.00 0.00 38.10 3.32
2886 3011 4.944619 TTTTCATGGTGGCATAAACACA 57.055 36.364 0.00 0.00 40.54 3.72
2887 3012 5.480642 TTTTCATGGTGGCATAAACACAT 57.519 34.783 0.00 0.00 40.54 3.21
2888 3013 6.596309 TTTTCATGGTGGCATAAACACATA 57.404 33.333 0.00 0.00 40.54 2.29
2889 3014 6.788598 TTTCATGGTGGCATAAACACATAT 57.211 33.333 0.00 0.00 40.54 1.78
2890 3015 6.788598 TTCATGGTGGCATAAACACATATT 57.211 33.333 0.00 0.00 40.54 1.28
2891 3016 6.146601 TCATGGTGGCATAAACACATATTG 57.853 37.500 0.00 0.00 40.54 1.90
2892 3017 5.655974 TCATGGTGGCATAAACACATATTGT 59.344 36.000 0.00 0.00 41.74 2.71
2893 3018 6.830838 TCATGGTGGCATAAACACATATTGTA 59.169 34.615 0.00 0.00 37.51 2.41
2894 3019 7.505248 TCATGGTGGCATAAACACATATTGTAT 59.495 33.333 0.00 0.00 37.51 2.29
2895 3020 7.652524 TGGTGGCATAAACACATATTGTATT 57.347 32.000 0.00 0.00 37.51 1.89
2920 3045 5.999205 ATTCAACATATTTGTCCTGGCAA 57.001 34.783 0.00 0.00 34.06 4.52
2923 3048 5.722263 TCAACATATTTGTCCTGGCAATTG 58.278 37.500 0.00 0.00 34.06 2.32
3013 3143 5.007136 GGAGTATCTGAAATTCCAAGCTTCG 59.993 44.000 0.00 0.00 33.73 3.79
3037 3167 1.619704 GCCCTGGTTCTTAAAGCCCAT 60.620 52.381 0.00 0.00 31.73 4.00
3046 3176 2.892852 TCTTAAAGCCCATATGCATGCC 59.107 45.455 16.68 0.00 0.00 4.40
3174 3304 6.421485 CAGGGTCTAAGTAGTGAGGTACTTA 58.579 44.000 0.00 4.01 42.19 2.24
3189 3319 4.771054 AGGTACTTACAGAATTCACCGAGT 59.229 41.667 8.44 8.67 27.25 4.18
3230 3360 0.529119 GTCAAGACGTTGTCACCCGT 60.529 55.000 0.00 0.00 40.54 5.28
3291 3421 6.313411 GTGAATACCTATATAGAGACGCGTCT 59.687 42.308 39.89 39.89 43.78 4.18
3306 3436 0.240945 CGTCTTCGCCTGGCATTTTT 59.759 50.000 20.29 0.00 0.00 1.94
3339 3469 3.857157 TTGTTCTGGTTGTAAGCCTCT 57.143 42.857 0.00 0.00 0.00 3.69
3340 3470 3.857157 TGTTCTGGTTGTAAGCCTCTT 57.143 42.857 0.00 0.00 0.00 2.85
3343 3473 2.334977 TCTGGTTGTAAGCCTCTTCCA 58.665 47.619 0.00 0.00 0.00 3.53
3395 3532 4.013267 AGATCTGACCACCAAAGTCTTG 57.987 45.455 0.00 0.00 35.21 3.02
3435 3580 6.461509 GGTTTGATGGTTTTAGGCCTATGATG 60.462 42.308 14.74 0.00 0.00 3.07
3436 3581 5.645056 TGATGGTTTTAGGCCTATGATGA 57.355 39.130 14.74 0.00 0.00 2.92
3437 3582 6.204852 TGATGGTTTTAGGCCTATGATGAT 57.795 37.500 14.74 3.57 0.00 2.45
3490 3635 0.675633 AGGCAATGCTGGTGTGTTTC 59.324 50.000 4.82 0.00 0.00 2.78
3496 3641 1.473258 TGCTGGTGTGTTTCTGCTTT 58.527 45.000 0.00 0.00 0.00 3.51
3497 3642 1.824230 TGCTGGTGTGTTTCTGCTTTT 59.176 42.857 0.00 0.00 0.00 2.27
3498 3643 2.159254 TGCTGGTGTGTTTCTGCTTTTC 60.159 45.455 0.00 0.00 0.00 2.29
3507 3652 4.394920 GTGTTTCTGCTTTTCGATCCCATA 59.605 41.667 0.00 0.00 0.00 2.74
3509 3654 5.066375 TGTTTCTGCTTTTCGATCCCATATG 59.934 40.000 0.00 0.00 0.00 1.78
3510 3655 3.141398 TCTGCTTTTCGATCCCATATGC 58.859 45.455 0.00 0.00 0.00 3.14
3511 3656 3.144506 CTGCTTTTCGATCCCATATGCT 58.855 45.455 0.00 0.00 0.00 3.79
3512 3657 4.040339 TCTGCTTTTCGATCCCATATGCTA 59.960 41.667 0.00 0.00 0.00 3.49
3513 3658 4.318332 TGCTTTTCGATCCCATATGCTAG 58.682 43.478 0.00 0.00 0.00 3.42
3514 3659 4.202357 TGCTTTTCGATCCCATATGCTAGT 60.202 41.667 0.00 0.00 0.00 2.57
3515 3660 4.153117 GCTTTTCGATCCCATATGCTAGTG 59.847 45.833 0.00 0.00 0.00 2.74
3518 3663 3.239449 TCGATCCCATATGCTAGTGGTT 58.761 45.455 0.00 0.00 33.55 3.67
3520 3665 2.638480 TCCCATATGCTAGTGGTTGC 57.362 50.000 0.00 0.00 33.55 4.17
3527 3672 2.042831 GCTAGTGGTTGCTGCCAGG 61.043 63.158 0.00 0.00 39.53 4.45
3528 3673 1.377725 CTAGTGGTTGCTGCCAGGG 60.378 63.158 0.00 0.00 39.53 4.45
3548 3693 6.609616 CCAGGGTATTGTTATTTGTGGGTTAT 59.390 38.462 0.00 0.00 0.00 1.89
3549 3694 7.780745 CCAGGGTATTGTTATTTGTGGGTTATA 59.219 37.037 0.00 0.00 0.00 0.98
3551 3696 9.362151 AGGGTATTGTTATTTGTGGGTTATATG 57.638 33.333 0.00 0.00 0.00 1.78
3559 3704 9.458374 GTTATTTGTGGGTTATATGTATGTTGC 57.542 33.333 0.00 0.00 0.00 4.17
3561 3706 7.652524 TTTGTGGGTTATATGTATGTTGCAT 57.347 32.000 0.00 0.00 0.00 3.96
3562 3707 6.875948 TGTGGGTTATATGTATGTTGCATC 57.124 37.500 0.00 0.00 0.00 3.91
3582 3741 1.138464 CCTCTCTGCAGCTGCTGAATA 59.862 52.381 37.29 28.90 45.93 1.75
3584 3743 2.867368 CTCTCTGCAGCTGCTGAATAAG 59.133 50.000 37.29 30.26 45.93 1.73
3598 3757 4.856664 CTGAATAAGCATGAACATGAGGC 58.143 43.478 17.40 3.64 41.20 4.70
3599 3758 3.633525 TGAATAAGCATGAACATGAGGCC 59.366 43.478 17.40 0.00 41.20 5.19
3600 3759 2.804986 TAAGCATGAACATGAGGCCA 57.195 45.000 17.40 0.00 41.20 5.36
3601 3760 2.154567 AAGCATGAACATGAGGCCAT 57.845 45.000 17.40 0.00 41.20 4.40
3602 3761 1.688772 AGCATGAACATGAGGCCATC 58.311 50.000 17.40 0.00 41.20 3.51
3603 3762 0.672342 GCATGAACATGAGGCCATCC 59.328 55.000 17.40 0.00 41.20 3.51
3606 3765 2.905415 TGAACATGAGGCCATCCTTT 57.095 45.000 5.01 0.00 44.46 3.11
3607 3766 3.173953 TGAACATGAGGCCATCCTTTT 57.826 42.857 5.01 0.00 44.46 2.27
3609 3768 2.610438 ACATGAGGCCATCCTTTTGT 57.390 45.000 5.01 0.00 44.46 2.83
3612 3771 0.400213 TGAGGCCATCCTTTTGTCGT 59.600 50.000 5.01 0.00 44.46 4.34
3614 3773 1.886542 GAGGCCATCCTTTTGTCGTTT 59.113 47.619 5.01 0.00 44.46 3.60
3615 3774 1.613437 AGGCCATCCTTTTGTCGTTTG 59.387 47.619 5.01 0.00 40.66 2.93
3616 3775 1.336795 GGCCATCCTTTTGTCGTTTGG 60.337 52.381 0.00 0.00 0.00 3.28
3621 3817 2.510613 TCCTTTTGTCGTTTGGATCCC 58.489 47.619 9.90 0.00 0.00 3.85
3626 3822 4.561500 TTTGTCGTTTGGATCCCTATCA 57.438 40.909 9.90 0.00 33.41 2.15
3628 3824 2.434336 TGTCGTTTGGATCCCTATCAGG 59.566 50.000 9.90 0.00 33.41 3.86
3639 3835 2.520120 TCCCTATCAGGATGGTCTCACT 59.480 50.000 0.00 0.00 37.67 3.41
3641 3837 3.303938 CCTATCAGGATGGTCTCACTGT 58.696 50.000 0.00 0.00 37.67 3.55
3644 3840 1.625315 TCAGGATGGTCTCACTGTTGG 59.375 52.381 0.00 0.00 36.16 3.77
3645 3841 0.326264 AGGATGGTCTCACTGTTGGC 59.674 55.000 0.00 0.00 0.00 4.52
3647 3843 0.320771 GATGGTCTCACTGTTGGCGT 60.321 55.000 0.00 0.00 0.00 5.68
3650 3846 0.307760 GGTCTCACTGTTGGCGTTTG 59.692 55.000 0.00 0.00 0.00 2.93
3653 3849 1.202592 TCTCACTGTTGGCGTTTGCTA 60.203 47.619 0.00 0.00 42.25 3.49
3664 3860 1.463674 CGTTTGCTAGCCATTTCCCT 58.536 50.000 13.29 0.00 0.00 4.20
3665 3861 1.133025 CGTTTGCTAGCCATTTCCCTG 59.867 52.381 13.29 0.00 0.00 4.45
3666 3862 1.134995 GTTTGCTAGCCATTTCCCTGC 60.135 52.381 13.29 0.00 0.00 4.85
3668 3864 1.076777 GCTAGCCATTTCCCTGCCA 60.077 57.895 2.29 0.00 0.00 4.92
3669 3865 0.468771 GCTAGCCATTTCCCTGCCAT 60.469 55.000 2.29 0.00 0.00 4.40
3670 3866 1.325355 CTAGCCATTTCCCTGCCATG 58.675 55.000 0.00 0.00 0.00 3.66
3671 3867 0.756442 TAGCCATTTCCCTGCCATGC 60.756 55.000 0.00 0.00 0.00 4.06
3672 3868 2.809706 CCATTTCCCTGCCATGCG 59.190 61.111 0.00 0.00 0.00 4.73
3674 3870 1.434696 CATTTCCCTGCCATGCGTC 59.565 57.895 0.00 0.00 0.00 5.19
3680 3876 4.552365 CTGCCATGCGTCCCCGAT 62.552 66.667 0.00 0.00 35.63 4.18
3682 3878 4.241555 GCCATGCGTCCCCGATCT 62.242 66.667 0.00 0.00 35.63 2.75
3683 3879 2.029666 CCATGCGTCCCCGATCTC 59.970 66.667 0.00 0.00 35.63 2.75
3685 3881 1.143838 CATGCGTCCCCGATCTCAA 59.856 57.895 0.00 0.00 35.63 3.02
3686 3882 0.461870 CATGCGTCCCCGATCTCAAA 60.462 55.000 0.00 0.00 35.63 2.69
3688 3884 1.218316 GCGTCCCCGATCTCAAACT 59.782 57.895 0.00 0.00 35.63 2.66
3692 3888 3.793559 CGTCCCCGATCTCAAACTTATT 58.206 45.455 0.00 0.00 35.63 1.40
3693 3889 4.189231 CGTCCCCGATCTCAAACTTATTT 58.811 43.478 0.00 0.00 35.63 1.40
3696 3892 5.880887 GTCCCCGATCTCAAACTTATTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
3697 3893 6.374613 GTCCCCGATCTCAAACTTATTTTCTT 59.625 38.462 0.00 0.00 0.00 2.52
3698 3894 6.946009 TCCCCGATCTCAAACTTATTTTCTTT 59.054 34.615 0.00 0.00 0.00 2.52
3699 3895 7.029563 CCCCGATCTCAAACTTATTTTCTTTG 58.970 38.462 0.00 0.00 0.00 2.77
3700 3896 6.528072 CCCGATCTCAAACTTATTTTCTTTGC 59.472 38.462 0.00 0.00 0.00 3.68
3701 3897 6.528072 CCGATCTCAAACTTATTTTCTTTGCC 59.472 38.462 0.00 0.00 0.00 4.52
3702 3898 6.249260 CGATCTCAAACTTATTTTCTTTGCCG 59.751 38.462 0.00 0.00 0.00 5.69
3706 3902 8.407064 TCTCAAACTTATTTTCTTTGCCGTTTA 58.593 29.630 0.00 0.00 0.00 2.01
3707 3903 8.928270 TCAAACTTATTTTCTTTGCCGTTTAA 57.072 26.923 0.00 0.00 0.00 1.52
3708 3904 9.367444 TCAAACTTATTTTCTTTGCCGTTTAAA 57.633 25.926 0.00 0.00 0.00 1.52
3709 3905 9.974750 CAAACTTATTTTCTTTGCCGTTTAAAA 57.025 25.926 0.00 0.00 0.00 1.52
3710 3906 9.976255 AAACTTATTTTCTTTGCCGTTTAAAAC 57.024 25.926 0.00 0.00 0.00 2.43
3713 3909 9.631639 CTTATTTTCTTTGCCGTTTAAAACTTG 57.368 29.630 0.00 0.00 0.00 3.16
3714 3910 5.457650 TTTCTTTGCCGTTTAAAACTTGC 57.542 34.783 0.00 0.00 0.00 4.01
3729 3989 8.723942 TTAAAACTTGCAACATGTTTTACCAT 57.276 26.923 23.91 10.16 45.04 3.55
3733 3993 4.576216 TGCAACATGTTTTACCATTCGT 57.424 36.364 8.77 0.00 0.00 3.85
3736 3996 7.379098 TGCAACATGTTTTACCATTCGTATA 57.621 32.000 8.77 0.00 0.00 1.47
3747 4007 7.709269 TTACCATTCGTATACAAGAATCTGC 57.291 36.000 3.32 0.00 35.14 4.26
3748 4008 5.057149 ACCATTCGTATACAAGAATCTGCC 58.943 41.667 3.32 0.00 35.14 4.85
3751 4011 6.422223 CATTCGTATACAAGAATCTGCCAAC 58.578 40.000 3.32 0.00 35.14 3.77
3769 4029 6.065374 TGCCAACTGTTCTTTTTATAGACCA 58.935 36.000 0.00 0.00 0.00 4.02
3789 4049 0.040157 GCAGCACACGAATCTTTGCA 60.040 50.000 0.00 0.00 37.44 4.08
3790 4050 1.678360 CAGCACACGAATCTTTGCAC 58.322 50.000 0.00 0.00 37.44 4.57
3791 4051 1.002576 CAGCACACGAATCTTTGCACA 60.003 47.619 0.00 0.00 37.44 4.57
3792 4052 1.002468 AGCACACGAATCTTTGCACAC 60.002 47.619 0.00 0.00 37.44 3.82
3793 4053 1.662360 CACACGAATCTTTGCACACG 58.338 50.000 0.00 0.00 0.00 4.49
3794 4054 0.586319 ACACGAATCTTTGCACACGG 59.414 50.000 0.00 0.00 0.00 4.94
3795 4055 0.725784 CACGAATCTTTGCACACGGC 60.726 55.000 0.00 0.00 45.13 5.68
3796 4056 0.884704 ACGAATCTTTGCACACGGCT 60.885 50.000 0.00 0.00 45.15 5.52
3797 4057 0.179215 CGAATCTTTGCACACGGCTC 60.179 55.000 0.00 0.00 45.15 4.70
3798 4058 0.179215 GAATCTTTGCACACGGCTCG 60.179 55.000 0.00 0.00 45.15 5.03
3799 4059 1.577328 AATCTTTGCACACGGCTCGG 61.577 55.000 0.00 0.00 45.15 4.63
3993 4269 3.917760 CCCACTCCCGATCGCCTC 61.918 72.222 10.32 0.00 0.00 4.70
4052 4337 1.623311 CTTTTGTTTCCCCATCCCACC 59.377 52.381 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.595065 GTCCGCAACGAAAAATAAATTGTG 58.405 37.500 0.00 0.00 0.00 3.33
4 5 5.815964 GTCCGCAACGAAAAATAAATTGT 57.184 34.783 0.00 0.00 0.00 2.71
19 20 4.697756 CTGCCCTTCCGTCCGCAA 62.698 66.667 0.00 0.00 0.00 4.85
22 23 4.760047 CCACTGCCCTTCCGTCCG 62.760 72.222 0.00 0.00 0.00 4.79
23 24 2.595009 GATCCACTGCCCTTCCGTCC 62.595 65.000 0.00 0.00 0.00 4.79
24 25 1.153349 GATCCACTGCCCTTCCGTC 60.153 63.158 0.00 0.00 0.00 4.79
25 26 2.990479 GATCCACTGCCCTTCCGT 59.010 61.111 0.00 0.00 0.00 4.69
26 27 2.202932 CGATCCACTGCCCTTCCG 60.203 66.667 0.00 0.00 0.00 4.30
27 28 0.035439 TTTCGATCCACTGCCCTTCC 60.035 55.000 0.00 0.00 0.00 3.46
28 29 1.087501 GTTTCGATCCACTGCCCTTC 58.912 55.000 0.00 0.00 0.00 3.46
29 30 0.673644 CGTTTCGATCCACTGCCCTT 60.674 55.000 0.00 0.00 0.00 3.95
30 31 1.079127 CGTTTCGATCCACTGCCCT 60.079 57.895 0.00 0.00 0.00 5.19
31 32 0.953960 AACGTTTCGATCCACTGCCC 60.954 55.000 0.00 0.00 0.00 5.36
32 33 0.872388 AAACGTTTCGATCCACTGCC 59.128 50.000 7.96 0.00 0.00 4.85
33 34 2.681152 AAAACGTTTCGATCCACTGC 57.319 45.000 15.01 0.00 0.00 4.40
51 52 6.183360 GCTTTTACGGTTTGTTTAGGCAAAAA 60.183 34.615 0.00 0.00 39.65 1.94
52 53 5.291371 GCTTTTACGGTTTGTTTAGGCAAAA 59.709 36.000 0.00 0.00 39.65 2.44
53 54 4.804665 GCTTTTACGGTTTGTTTAGGCAAA 59.195 37.500 0.00 0.00 36.17 3.68
54 55 4.361420 GCTTTTACGGTTTGTTTAGGCAA 58.639 39.130 0.00 0.00 0.00 4.52
55 56 3.548415 CGCTTTTACGGTTTGTTTAGGCA 60.548 43.478 0.00 0.00 0.00 4.75
56 57 2.975193 CGCTTTTACGGTTTGTTTAGGC 59.025 45.455 0.00 0.00 0.00 3.93
57 58 4.213596 ACGCTTTTACGGTTTGTTTAGG 57.786 40.909 0.00 0.00 37.37 2.69
58 59 8.991810 CATAATACGCTTTTACGGTTTGTTTAG 58.008 33.333 0.00 0.00 37.37 1.85
59 60 8.715998 TCATAATACGCTTTTACGGTTTGTTTA 58.284 29.630 0.00 0.00 37.37 2.01
60 61 7.534918 GTCATAATACGCTTTTACGGTTTGTTT 59.465 33.333 0.00 0.00 37.37 2.83
61 62 7.017055 GTCATAATACGCTTTTACGGTTTGTT 58.983 34.615 0.00 0.00 37.37 2.83
62 63 6.147492 TGTCATAATACGCTTTTACGGTTTGT 59.853 34.615 0.00 0.00 37.37 2.83
63 64 6.535811 TGTCATAATACGCTTTTACGGTTTG 58.464 36.000 0.00 0.00 37.37 2.93
64 65 6.724694 TGTCATAATACGCTTTTACGGTTT 57.275 33.333 0.00 0.00 37.37 3.27
65 66 6.913873 ATGTCATAATACGCTTTTACGGTT 57.086 33.333 0.00 0.00 37.37 4.44
66 67 6.913873 AATGTCATAATACGCTTTTACGGT 57.086 33.333 0.00 0.00 37.37 4.83
67 68 8.289440 TCTAATGTCATAATACGCTTTTACGG 57.711 34.615 0.00 0.00 37.37 4.02
68 69 9.779237 CTTCTAATGTCATAATACGCTTTTACG 57.221 33.333 0.00 0.00 39.50 3.18
73 74 8.552034 GCTTTCTTCTAATGTCATAATACGCTT 58.448 33.333 0.00 0.00 0.00 4.68
74 75 7.096023 CGCTTTCTTCTAATGTCATAATACGCT 60.096 37.037 0.00 0.00 0.00 5.07
75 76 7.004225 CGCTTTCTTCTAATGTCATAATACGC 58.996 38.462 0.00 0.00 0.00 4.42
76 77 8.062231 ACGCTTTCTTCTAATGTCATAATACG 57.938 34.615 0.00 0.00 0.00 3.06
80 81 9.378551 ACAATACGCTTTCTTCTAATGTCATAA 57.621 29.630 0.00 0.00 0.00 1.90
81 82 8.817100 CACAATACGCTTTCTTCTAATGTCATA 58.183 33.333 0.00 0.00 0.00 2.15
82 83 7.549134 TCACAATACGCTTTCTTCTAATGTCAT 59.451 33.333 0.00 0.00 0.00 3.06
83 84 6.871492 TCACAATACGCTTTCTTCTAATGTCA 59.129 34.615 0.00 0.00 0.00 3.58
84 85 7.174082 GTCACAATACGCTTTCTTCTAATGTC 58.826 38.462 0.00 0.00 0.00 3.06
85 86 6.183360 CGTCACAATACGCTTTCTTCTAATGT 60.183 38.462 0.00 0.00 35.87 2.71
86 87 6.178507 CGTCACAATACGCTTTCTTCTAATG 58.821 40.000 0.00 0.00 35.87 1.90
87 88 5.291128 CCGTCACAATACGCTTTCTTCTAAT 59.709 40.000 0.00 0.00 41.51 1.73
88 89 4.624024 CCGTCACAATACGCTTTCTTCTAA 59.376 41.667 0.00 0.00 41.51 2.10
89 90 4.171005 CCGTCACAATACGCTTTCTTCTA 58.829 43.478 0.00 0.00 41.51 2.10
90 91 2.993899 CCGTCACAATACGCTTTCTTCT 59.006 45.455 0.00 0.00 41.51 2.85
91 92 2.735134 ACCGTCACAATACGCTTTCTTC 59.265 45.455 0.00 0.00 41.51 2.87
92 93 2.478894 CACCGTCACAATACGCTTTCTT 59.521 45.455 0.00 0.00 41.51 2.52
93 94 2.066262 CACCGTCACAATACGCTTTCT 58.934 47.619 0.00 0.00 41.51 2.52
94 95 2.063266 TCACCGTCACAATACGCTTTC 58.937 47.619 0.00 0.00 41.51 2.62
95 96 2.157834 TCACCGTCACAATACGCTTT 57.842 45.000 0.00 0.00 41.51 3.51
96 97 1.796459 GTTCACCGTCACAATACGCTT 59.204 47.619 0.00 0.00 41.51 4.68
97 98 1.425412 GTTCACCGTCACAATACGCT 58.575 50.000 0.00 0.00 41.51 5.07
98 99 0.441145 GGTTCACCGTCACAATACGC 59.559 55.000 0.00 0.00 41.51 4.42
99 100 1.073177 GGGTTCACCGTCACAATACG 58.927 55.000 0.00 0.00 42.49 3.06
100 101 2.172851 TGGGTTCACCGTCACAATAC 57.827 50.000 0.00 0.00 44.64 1.89
101 102 2.932855 TTGGGTTCACCGTCACAATA 57.067 45.000 0.00 0.00 44.64 1.90
102 103 1.953686 CTTTGGGTTCACCGTCACAAT 59.046 47.619 0.00 0.00 44.64 2.71
103 104 1.065345 TCTTTGGGTTCACCGTCACAA 60.065 47.619 0.00 0.00 44.64 3.33
104 105 0.542333 TCTTTGGGTTCACCGTCACA 59.458 50.000 0.00 0.00 44.64 3.58
105 106 1.226746 CTCTTTGGGTTCACCGTCAC 58.773 55.000 0.00 0.00 44.64 3.67
106 107 0.834612 ACTCTTTGGGTTCACCGTCA 59.165 50.000 0.00 0.00 44.64 4.35
107 108 1.202604 TGACTCTTTGGGTTCACCGTC 60.203 52.381 0.00 0.00 44.64 4.79
108 109 0.834612 TGACTCTTTGGGTTCACCGT 59.165 50.000 0.00 0.00 44.64 4.83
109 110 1.961793 TTGACTCTTTGGGTTCACCG 58.038 50.000 0.00 0.00 44.64 4.94
110 111 2.820197 GGATTGACTCTTTGGGTTCACC 59.180 50.000 0.00 0.00 40.81 4.02
111 112 2.484264 CGGATTGACTCTTTGGGTTCAC 59.516 50.000 0.00 0.00 0.00 3.18
112 113 2.105821 ACGGATTGACTCTTTGGGTTCA 59.894 45.455 0.00 0.00 0.00 3.18
113 114 2.484264 CACGGATTGACTCTTTGGGTTC 59.516 50.000 0.00 0.00 0.00 3.62
114 115 2.504367 CACGGATTGACTCTTTGGGTT 58.496 47.619 0.00 0.00 0.00 4.11
115 116 1.882352 GCACGGATTGACTCTTTGGGT 60.882 52.381 0.00 0.00 0.00 4.51
116 117 0.804989 GCACGGATTGACTCTTTGGG 59.195 55.000 0.00 0.00 0.00 4.12
117 118 1.813513 AGCACGGATTGACTCTTTGG 58.186 50.000 0.00 0.00 0.00 3.28
118 119 3.904136 AAAGCACGGATTGACTCTTTG 57.096 42.857 0.00 0.00 0.00 2.77
119 120 7.865706 ATAATAAAGCACGGATTGACTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
120 121 7.865706 AATAATAAAGCACGGATTGACTCTT 57.134 32.000 0.00 0.00 0.00 2.85
121 122 9.561069 AATAATAATAAAGCACGGATTGACTCT 57.439 29.630 0.00 0.00 0.00 3.24
125 126 9.226606 CCCTAATAATAATAAAGCACGGATTGA 57.773 33.333 0.00 0.00 0.00 2.57
126 127 9.226606 TCCCTAATAATAATAAAGCACGGATTG 57.773 33.333 0.00 0.00 0.00 2.67
127 128 9.975218 ATCCCTAATAATAATAAAGCACGGATT 57.025 29.630 0.00 0.00 0.00 3.01
148 149 8.808092 GCTAATGTACAGAGTAAATCTATCCCT 58.192 37.037 0.33 0.00 36.10 4.20
149 150 8.808092 AGCTAATGTACAGAGTAAATCTATCCC 58.192 37.037 0.33 0.00 36.10 3.85
168 169 8.197988 AGGTTTGACTTACGATAAAGCTAATG 57.802 34.615 0.00 0.00 38.59 1.90
249 252 6.323996 TCCATGAGGAATCTAACGACACTAAT 59.676 38.462 0.00 0.00 42.23 1.73
250 253 5.655090 TCCATGAGGAATCTAACGACACTAA 59.345 40.000 0.00 0.00 42.23 2.24
251 254 5.198207 TCCATGAGGAATCTAACGACACTA 58.802 41.667 0.00 0.00 42.23 2.74
252 255 4.023980 TCCATGAGGAATCTAACGACACT 58.976 43.478 0.00 0.00 42.23 3.55
253 256 4.386867 TCCATGAGGAATCTAACGACAC 57.613 45.455 0.00 0.00 42.23 3.67
412 427 3.126703 TTGGGCTTGGGCTGAACGA 62.127 57.895 0.00 0.00 38.73 3.85
494 509 1.375396 TGACGCCGACTTTGGGATG 60.375 57.895 0.00 0.00 0.00 3.51
496 511 2.029964 GTGACGCCGACTTTGGGA 59.970 61.111 0.00 0.00 0.00 4.37
497 512 3.047877 GGTGACGCCGACTTTGGG 61.048 66.667 0.00 0.00 0.00 4.12
688 747 2.896443 CCGAGCCTTGGTCTCCTC 59.104 66.667 0.00 0.00 0.00 3.71
689 748 3.394836 GCCGAGCCTTGGTCTCCT 61.395 66.667 0.00 0.00 0.00 3.69
690 749 4.821589 CGCCGAGCCTTGGTCTCC 62.822 72.222 0.00 0.00 0.00 3.71
756 818 2.173569 GGGCAGGAGATTACCATCTTGT 59.826 50.000 0.00 0.00 40.14 3.16
798 860 4.036804 GGCATCAAACACGGCGCA 62.037 61.111 10.83 0.00 0.00 6.09
810 872 4.996434 CTCGGCGGGATGGGCATC 62.996 72.222 0.00 0.00 37.11 3.91
817 879 4.647615 CGCGATTCTCGGCGGGAT 62.648 66.667 11.69 0.00 40.84 3.85
846 908 1.407979 TCTAATTCTCCGCCGAGTTCC 59.592 52.381 1.92 0.00 37.40 3.62
862 924 2.617021 GCAAAACCACGGGGAGATCTAA 60.617 50.000 12.96 0.00 38.05 2.10
873 935 3.574614 CAAATTCTAGGGCAAAACCACG 58.425 45.455 0.00 0.00 42.05 4.94
877 939 3.368427 GGCTCCAAATTCTAGGGCAAAAC 60.368 47.826 0.00 0.00 0.00 2.43
903 965 0.822164 GAACTAGTGGAAGCGGCCTA 59.178 55.000 0.00 0.00 0.00 3.93
904 966 1.597461 GAACTAGTGGAAGCGGCCT 59.403 57.895 0.00 0.00 0.00 5.19
1133 1200 1.268283 ACCAGCTGTAAGGGGAGAGC 61.268 60.000 13.81 0.00 35.99 4.09
1154 1221 2.124487 ACAACCCACACCACACGG 60.124 61.111 0.00 0.00 38.77 4.94
1369 1440 4.386652 GCAAAACACATTCAACAGCCATAG 59.613 41.667 0.00 0.00 0.00 2.23
1381 1452 6.646240 GGTACAGAATCAATGCAAAACACATT 59.354 34.615 0.00 0.00 38.25 2.71
1452 1524 6.889177 TGACCTATAATTCACAATCCTTGCAA 59.111 34.615 0.00 0.00 0.00 4.08
1456 1528 7.861629 TGTCTGACCTATAATTCACAATCCTT 58.138 34.615 5.17 0.00 0.00 3.36
1510 1604 5.571784 ACAAACATTCTATCAGCATGTGG 57.428 39.130 0.00 0.00 32.57 4.17
1553 1649 4.006989 TCTCAATACCAACCAAACCATCG 58.993 43.478 0.00 0.00 0.00 3.84
1581 1677 7.034397 GTCACTGAGTTGATTAACCTACCTAC 58.966 42.308 0.00 0.00 37.52 3.18
1665 1761 0.987613 TGCATATCCCCCAGCACTGA 60.988 55.000 0.00 0.00 31.05 3.41
1782 1878 6.968263 ACAGCTGTAGCAATAGAGAGATAA 57.032 37.500 20.16 0.00 45.16 1.75
1783 1879 6.657117 CCTACAGCTGTAGCAATAGAGAGATA 59.343 42.308 37.82 10.92 44.97 1.98
1814 1911 4.223953 CTCTTCCCACTGCCCTATTACTA 58.776 47.826 0.00 0.00 0.00 1.82
1815 1912 3.041946 CTCTTCCCACTGCCCTATTACT 58.958 50.000 0.00 0.00 0.00 2.24
1816 1913 2.104963 CCTCTTCCCACTGCCCTATTAC 59.895 54.545 0.00 0.00 0.00 1.89
1867 1964 6.315393 TCTTTCCCGTTCAGTAATAAGATTGC 59.685 38.462 0.00 0.00 0.00 3.56
1884 1981 3.194968 TGGTAAGTTCTAGCTCTTTCCCG 59.805 47.826 14.58 0.00 32.60 5.14
1907 2004 7.246311 CACCAATTGCTGAACTATCTTAACAG 58.754 38.462 0.00 0.00 0.00 3.16
1965 2062 4.643463 TCATGCAATTGAAACTTGGCAAT 58.357 34.783 10.34 0.00 36.35 3.56
2120 2218 9.982651 TTTCACAATAGCTAGATAAGGTGATAC 57.017 33.333 19.43 0.00 37.13 2.24
2138 2236 3.094572 CCTTGATGAGGGCTTTCACAAT 58.905 45.455 0.00 0.00 42.26 2.71
2200 2298 2.346803 TGTCGGAGAGCTTAAATGCAC 58.653 47.619 0.00 0.00 36.95 4.57
2220 2334 7.224557 GTGGAAAAAGATGCACATAGTTGTTTT 59.775 33.333 0.00 0.00 40.88 2.43
2312 2430 6.214412 AGGAGTCTTAACATGTCAATTCTCCT 59.786 38.462 23.77 23.77 41.81 3.69
2428 2547 7.354312 ACAGTTTTGTAGCCATAAATAGGGAT 58.646 34.615 0.00 0.00 35.25 3.85
2486 2606 6.223351 AGCTAGTAACCCTTCTACATGAAC 57.777 41.667 0.00 0.00 0.00 3.18
2732 2856 8.773645 TCAGAAATATAGCATGAACATTTACCG 58.226 33.333 0.00 0.00 0.00 4.02
2812 2936 5.068636 ACAAATTGCAGATGACAGTTCTCT 58.931 37.500 0.00 0.00 0.00 3.10
2814 2938 5.779529 AACAAATTGCAGATGACAGTTCT 57.220 34.783 0.00 0.00 0.00 3.01
2815 2939 6.292488 CCAAAACAAATTGCAGATGACAGTTC 60.292 38.462 0.00 0.00 0.00 3.01
2817 2941 5.051816 CCAAAACAAATTGCAGATGACAGT 58.948 37.500 0.00 0.00 0.00 3.55
2818 2942 5.051816 ACCAAAACAAATTGCAGATGACAG 58.948 37.500 0.00 0.00 0.00 3.51
2819 2943 5.021033 ACCAAAACAAATTGCAGATGACA 57.979 34.783 0.00 0.00 0.00 3.58
2820 2944 5.989551 AACCAAAACAAATTGCAGATGAC 57.010 34.783 0.00 0.00 0.00 3.06
2821 2945 7.440198 TCATAACCAAAACAAATTGCAGATGA 58.560 30.769 0.00 0.00 0.00 2.92
2822 2946 7.148540 CCTCATAACCAAAACAAATTGCAGATG 60.149 37.037 0.00 0.00 0.00 2.90
2823 2947 6.875195 CCTCATAACCAAAACAAATTGCAGAT 59.125 34.615 0.00 0.00 0.00 2.90
2824 2948 6.041409 TCCTCATAACCAAAACAAATTGCAGA 59.959 34.615 0.00 0.00 0.00 4.26
2825 2949 6.146021 GTCCTCATAACCAAAACAAATTGCAG 59.854 38.462 0.00 0.00 0.00 4.41
2826 2950 5.988561 GTCCTCATAACCAAAACAAATTGCA 59.011 36.000 0.00 0.00 0.00 4.08
2827 2951 5.408299 GGTCCTCATAACCAAAACAAATTGC 59.592 40.000 0.00 0.00 36.75 3.56
2828 2952 5.633182 CGGTCCTCATAACCAAAACAAATTG 59.367 40.000 0.00 0.00 36.53 2.32
2829 2953 5.536916 TCGGTCCTCATAACCAAAACAAATT 59.463 36.000 0.00 0.00 36.53 1.82
2830 2954 5.074115 TCGGTCCTCATAACCAAAACAAAT 58.926 37.500 0.00 0.00 36.53 2.32
2831 2955 4.462133 TCGGTCCTCATAACCAAAACAAA 58.538 39.130 0.00 0.00 36.53 2.83
2851 2975 7.432252 GCCACCATGAAAATAAAATAAGTCTCG 59.568 37.037 0.00 0.00 0.00 4.04
2872 2997 8.940768 AAAATACAATATGTGTTTATGCCACC 57.059 30.769 5.79 0.00 40.09 4.61
2893 3018 8.538701 TGCCAGGACAAATATGTTGAATAAAAT 58.461 29.630 0.00 0.00 40.74 1.82
2894 3019 7.901029 TGCCAGGACAAATATGTTGAATAAAA 58.099 30.769 0.00 0.00 40.74 1.52
2895 3020 7.473735 TGCCAGGACAAATATGTTGAATAAA 57.526 32.000 0.00 0.00 40.74 1.40
2901 3026 4.330620 GCAATTGCCAGGACAAATATGTTG 59.669 41.667 20.06 0.00 35.82 3.33
2920 3045 2.038689 TGGTCCACAAATGCAATGCAAT 59.961 40.909 13.45 0.00 43.62 3.56
2923 3048 2.166821 TTGGTCCACAAATGCAATGC 57.833 45.000 0.00 0.00 35.79 3.56
2934 3059 2.568623 AGGTTCACTGATTGGTCCAC 57.431 50.000 0.00 0.00 0.00 4.02
3013 3143 2.688446 GGCTTTAAGAACCAGGGCATAC 59.312 50.000 0.00 0.00 0.00 2.39
3037 3167 3.548770 CCTCTTCTTCAAGGCATGCATA 58.451 45.455 21.36 0.00 0.00 3.14
3046 3176 3.197549 CCTTCCTCTCCCTCTTCTTCAAG 59.802 52.174 0.00 0.00 0.00 3.02
3174 3304 3.771577 AAAGGACTCGGTGAATTCTGT 57.228 42.857 7.05 0.00 0.00 3.41
3182 3312 1.574702 GGGCGAAAAAGGACTCGGTG 61.575 60.000 0.00 0.00 35.60 4.94
3189 3319 0.958091 CACATGTGGGCGAAAAAGGA 59.042 50.000 18.51 0.00 0.00 3.36
3230 3360 5.392165 CGCGGACATGAATTAAGGGTAAAAA 60.392 40.000 0.00 0.00 0.00 1.94
3306 3436 2.479389 CCAGAACAAAACGCTGCTTCAA 60.479 45.455 0.00 0.00 0.00 2.69
3339 3469 0.757561 CATGCCCATGCCATCTGGAA 60.758 55.000 0.00 0.00 35.70 3.53
3340 3470 1.152631 CATGCCCATGCCATCTGGA 60.153 57.895 0.00 0.00 35.70 3.86
3395 3532 4.664150 TCAAACCATTCCAAACTGAACC 57.336 40.909 0.00 0.00 0.00 3.62
3435 3580 8.719648 CCAAGCTACAGATTCTTCATTCATATC 58.280 37.037 0.00 0.00 0.00 1.63
3436 3581 8.216423 ACCAAGCTACAGATTCTTCATTCATAT 58.784 33.333 0.00 0.00 0.00 1.78
3437 3582 7.568349 ACCAAGCTACAGATTCTTCATTCATA 58.432 34.615 0.00 0.00 0.00 2.15
3490 3635 3.144506 AGCATATGGGATCGAAAAGCAG 58.855 45.455 4.56 0.00 0.00 4.24
3496 3641 3.239449 ACCACTAGCATATGGGATCGAA 58.761 45.455 4.56 0.00 40.59 3.71
3497 3642 2.889512 ACCACTAGCATATGGGATCGA 58.110 47.619 4.56 0.00 40.59 3.59
3498 3643 3.329386 CAACCACTAGCATATGGGATCG 58.671 50.000 4.56 0.00 40.59 3.69
3507 3652 0.679002 CTGGCAGCAACCACTAGCAT 60.679 55.000 0.00 0.00 35.33 3.79
3509 3654 2.042831 CCTGGCAGCAACCACTAGC 61.043 63.158 9.56 0.00 35.33 3.42
3510 3655 1.377725 CCCTGGCAGCAACCACTAG 60.378 63.158 9.56 0.00 35.33 2.57
3511 3656 0.838554 TACCCTGGCAGCAACCACTA 60.839 55.000 9.56 0.00 35.33 2.74
3512 3657 1.500783 ATACCCTGGCAGCAACCACT 61.501 55.000 9.56 0.00 35.33 4.00
3513 3658 0.611896 AATACCCTGGCAGCAACCAC 60.612 55.000 9.56 0.00 35.33 4.16
3514 3659 0.611618 CAATACCCTGGCAGCAACCA 60.612 55.000 9.56 0.00 38.29 3.67
3515 3660 0.611896 ACAATACCCTGGCAGCAACC 60.612 55.000 9.56 0.00 0.00 3.77
3518 3663 3.380471 AATAACAATACCCTGGCAGCA 57.620 42.857 9.56 0.00 0.00 4.41
3520 3665 4.142182 CCACAAATAACAATACCCTGGCAG 60.142 45.833 7.75 7.75 0.00 4.85
3548 3693 4.635223 GCAGAGAGGATGCAACATACATA 58.365 43.478 0.00 0.00 43.31 2.29
3549 3694 3.474600 GCAGAGAGGATGCAACATACAT 58.525 45.455 0.00 0.00 43.31 2.29
3558 3703 2.181521 GCAGCTGCAGAGAGGATGC 61.182 63.158 33.36 7.77 44.11 3.91
3559 3704 0.812014 CAGCAGCTGCAGAGAGGATG 60.812 60.000 38.24 21.92 45.16 3.51
3561 3706 1.190178 TTCAGCAGCTGCAGAGAGGA 61.190 55.000 38.24 19.23 45.16 3.71
3562 3707 0.107606 ATTCAGCAGCTGCAGAGAGG 60.108 55.000 38.24 20.03 45.16 3.69
3582 3741 2.029623 GATGGCCTCATGTTCATGCTT 58.970 47.619 3.32 0.00 32.98 3.91
3584 3743 0.672342 GGATGGCCTCATGTTCATGC 59.328 55.000 3.32 0.00 32.98 4.06
3587 3746 2.827322 CAAAAGGATGGCCTCATGTTCA 59.173 45.455 3.32 0.00 46.28 3.18
3588 3747 2.827921 ACAAAAGGATGGCCTCATGTTC 59.172 45.455 3.32 0.00 46.28 3.18
3590 3749 2.450476 GACAAAAGGATGGCCTCATGT 58.550 47.619 3.32 0.00 46.28 3.21
3591 3750 1.402968 CGACAAAAGGATGGCCTCATG 59.597 52.381 3.32 0.00 46.28 3.07
3592 3751 1.004745 ACGACAAAAGGATGGCCTCAT 59.995 47.619 3.32 0.00 46.28 2.90
3593 3752 0.400213 ACGACAAAAGGATGGCCTCA 59.600 50.000 3.32 0.00 46.28 3.86
3594 3753 1.534729 AACGACAAAAGGATGGCCTC 58.465 50.000 3.32 0.00 46.28 4.70
3596 3755 1.336795 CCAAACGACAAAAGGATGGCC 60.337 52.381 0.00 0.00 0.00 5.36
3598 3757 3.119495 GGATCCAAACGACAAAAGGATGG 60.119 47.826 6.95 0.00 39.10 3.51
3599 3758 3.119495 GGGATCCAAACGACAAAAGGATG 60.119 47.826 15.23 0.00 39.10 3.51
3600 3759 3.089284 GGGATCCAAACGACAAAAGGAT 58.911 45.455 15.23 0.00 41.56 3.24
3601 3760 2.107552 AGGGATCCAAACGACAAAAGGA 59.892 45.455 15.23 0.00 0.00 3.36
3602 3761 2.514803 AGGGATCCAAACGACAAAAGG 58.485 47.619 15.23 0.00 0.00 3.11
3603 3762 4.941263 TGATAGGGATCCAAACGACAAAAG 59.059 41.667 15.23 0.00 0.00 2.27
3604 3763 4.912586 TGATAGGGATCCAAACGACAAAA 58.087 39.130 15.23 0.00 0.00 2.44
3606 3765 3.118408 CCTGATAGGGATCCAAACGACAA 60.118 47.826 15.23 0.00 0.00 3.18
3607 3766 2.434336 CCTGATAGGGATCCAAACGACA 59.566 50.000 15.23 4.90 0.00 4.35
3609 3768 3.040655 TCCTGATAGGGATCCAAACGA 57.959 47.619 15.23 0.00 35.59 3.85
3612 3771 3.652869 GACCATCCTGATAGGGATCCAAA 59.347 47.826 15.23 0.08 43.55 3.28
3614 3773 2.456340 AGACCATCCTGATAGGGATCCA 59.544 50.000 15.23 0.00 43.55 3.41
3615 3774 3.103742 GAGACCATCCTGATAGGGATCC 58.896 54.545 1.92 1.92 43.55 3.36
3616 3775 3.513515 GTGAGACCATCCTGATAGGGATC 59.486 52.174 0.00 0.00 43.55 3.36
3621 3817 4.442612 CCAACAGTGAGACCATCCTGATAG 60.443 50.000 0.00 0.00 33.13 2.08
3626 3822 0.326264 GCCAACAGTGAGACCATCCT 59.674 55.000 0.00 0.00 0.00 3.24
3628 3824 0.320771 ACGCCAACAGTGAGACCATC 60.321 55.000 0.00 0.00 0.00 3.51
3633 3829 0.463654 AGCAAACGCCAACAGTGAGA 60.464 50.000 0.00 0.00 0.00 3.27
3639 3835 3.350377 GGCTAGCAAACGCCAACA 58.650 55.556 18.24 0.00 45.59 3.33
3644 3840 0.179137 GGGAAATGGCTAGCAAACGC 60.179 55.000 18.24 6.36 0.00 4.84
3645 3841 1.133025 CAGGGAAATGGCTAGCAAACG 59.867 52.381 18.24 0.00 0.00 3.60
3647 3843 1.185315 GCAGGGAAATGGCTAGCAAA 58.815 50.000 18.24 4.19 0.00 3.68
3650 3846 0.468771 ATGGCAGGGAAATGGCTAGC 60.469 55.000 6.04 6.04 45.51 3.42
3653 3849 2.062177 GCATGGCAGGGAAATGGCT 61.062 57.895 0.00 0.00 45.51 4.75
3658 3854 2.361104 GGACGCATGGCAGGGAAA 60.361 61.111 0.00 0.00 0.00 3.13
3672 3868 5.880887 AGAAAATAAGTTTGAGATCGGGGAC 59.119 40.000 0.00 0.00 0.00 4.46
3674 3870 6.759497 AAGAAAATAAGTTTGAGATCGGGG 57.241 37.500 0.00 0.00 0.00 5.73
3677 3873 6.249260 CGGCAAAGAAAATAAGTTTGAGATCG 59.751 38.462 0.00 0.00 33.78 3.69
3678 3874 7.084486 ACGGCAAAGAAAATAAGTTTGAGATC 58.916 34.615 0.00 0.00 33.78 2.75
3679 3875 6.981722 ACGGCAAAGAAAATAAGTTTGAGAT 58.018 32.000 0.00 0.00 33.78 2.75
3680 3876 6.385649 ACGGCAAAGAAAATAAGTTTGAGA 57.614 33.333 0.00 0.00 33.78 3.27
3682 3878 8.928270 TTAAACGGCAAAGAAAATAAGTTTGA 57.072 26.923 0.00 0.00 33.78 2.69
3683 3879 9.974750 TTTTAAACGGCAAAGAAAATAAGTTTG 57.025 25.926 0.00 0.00 34.83 2.93
3685 3881 9.373603 AGTTTTAAACGGCAAAGAAAATAAGTT 57.626 25.926 1.95 0.00 36.23 2.66
3686 3882 8.936070 AGTTTTAAACGGCAAAGAAAATAAGT 57.064 26.923 1.95 0.00 36.23 2.24
3688 3884 8.117370 GCAAGTTTTAAACGGCAAAGAAAATAA 58.883 29.630 17.74 0.00 36.83 1.40
3692 3888 4.929808 TGCAAGTTTTAAACGGCAAAGAAA 59.070 33.333 21.18 4.21 41.32 2.52
3693 3889 4.495422 TGCAAGTTTTAAACGGCAAAGAA 58.505 34.783 21.18 4.76 41.32 2.52
3697 3893 3.585862 TGTTGCAAGTTTTAAACGGCAA 58.414 36.364 26.33 26.33 46.49 4.52
3698 3894 3.232213 TGTTGCAAGTTTTAAACGGCA 57.768 38.095 20.15 20.15 42.10 5.69
3699 3895 3.553917 ACATGTTGCAAGTTTTAAACGGC 59.446 39.130 16.46 16.46 37.18 5.68
3700 3896 5.710613 AACATGTTGCAAGTTTTAAACGG 57.289 34.783 11.07 0.65 36.23 4.44
3701 3897 7.632897 GGTAAAACATGTTGCAAGTTTTAAACG 59.367 33.333 24.93 3.35 43.76 3.60
3702 3898 8.443937 TGGTAAAACATGTTGCAAGTTTTAAAC 58.556 29.630 24.93 21.63 43.76 2.01
3706 3902 7.465245 CGAATGGTAAAACATGTTGCAAGTTTT 60.465 33.333 23.32 23.32 43.96 2.43
3707 3903 6.019156 CGAATGGTAAAACATGTTGCAAGTTT 60.019 34.615 12.82 4.27 36.95 2.66
3708 3904 5.461737 CGAATGGTAAAACATGTTGCAAGTT 59.538 36.000 12.82 4.75 0.00 2.66
3709 3905 4.981674 CGAATGGTAAAACATGTTGCAAGT 59.018 37.500 12.82 0.00 0.00 3.16
3710 3906 4.981674 ACGAATGGTAAAACATGTTGCAAG 59.018 37.500 12.82 0.00 0.00 4.01
3713 3909 7.244898 TGTATACGAATGGTAAAACATGTTGC 58.755 34.615 12.82 5.73 34.09 4.17
3714 3910 9.272901 CTTGTATACGAATGGTAAAACATGTTG 57.727 33.333 12.82 0.00 33.60 3.33
3729 3989 5.580691 CAGTTGGCAGATTCTTGTATACGAA 59.419 40.000 0.00 0.00 0.00 3.85
3733 3993 6.711277 AGAACAGTTGGCAGATTCTTGTATA 58.289 36.000 0.00 0.00 0.00 1.47
3736 3996 3.825328 AGAACAGTTGGCAGATTCTTGT 58.175 40.909 0.00 0.00 0.00 3.16
3769 4029 0.239347 GCAAAGATTCGTGTGCTGCT 59.761 50.000 0.00 0.00 34.13 4.24
3789 4049 4.363990 CTCACTGCCGAGCCGTGT 62.364 66.667 15.86 2.08 42.71 4.49
3793 4053 4.154347 CTCCCTCACTGCCGAGCC 62.154 72.222 0.00 0.00 0.00 4.70
3794 4054 3.071206 TCTCCCTCACTGCCGAGC 61.071 66.667 0.00 0.00 0.00 5.03
3795 4055 3.074999 GCTCTCCCTCACTGCCGAG 62.075 68.421 0.00 0.00 0.00 4.63
3796 4056 3.071206 GCTCTCCCTCACTGCCGA 61.071 66.667 0.00 0.00 0.00 5.54
3797 4057 4.154347 GGCTCTCCCTCACTGCCG 62.154 72.222 0.00 0.00 33.96 5.69
3798 4058 4.154347 CGGCTCTCCCTCACTGCC 62.154 72.222 0.00 0.00 40.14 4.85
3799 4059 3.363844 GACGGCTCTCCCTCACTGC 62.364 68.421 0.00 0.00 0.00 4.40
3946 4222 2.294078 AAAGGGAGGGGACGAGCTG 61.294 63.158 0.00 0.00 0.00 4.24
3947 4223 2.122954 AAAGGGAGGGGACGAGCT 59.877 61.111 0.00 0.00 0.00 4.09
3948 4224 2.269241 CAAAGGGAGGGGACGAGC 59.731 66.667 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.