Multiple sequence alignment - TraesCS2D01G467300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467300 chr2D 100.000 6092 0 0 1 6092 572365700 572359609 0.000000e+00 11250
1 TraesCS2D01G467300 chr2A 94.853 4935 152 38 714 5606 711641426 711636552 0.000000e+00 7613
2 TraesCS2D01G467300 chr2A 86.321 212 29 0 5633 5844 711636078 711635867 1.320000e-56 231
3 TraesCS2D01G467300 chr2A 81.481 216 21 11 1 204 711642113 711641905 6.320000e-35 159
4 TraesCS2D01G467300 chr2B 94.326 4952 174 37 714 5606 687473690 687468787 0.000000e+00 7489
5 TraesCS2D01G467300 chr2B 84.727 275 42 0 5696 5970 687466781 687466507 6.010000e-70 276
6 TraesCS2D01G467300 chr2B 82.759 116 19 1 5751 5865 784236059 784236174 1.080000e-17 102
7 TraesCS2D01G467300 chr7A 87.500 416 40 7 3387 3801 575284435 575284839 2.570000e-128 470
8 TraesCS2D01G467300 chr7A 89.286 84 9 0 4132 4215 276211828 276211745 8.350000e-19 106
9 TraesCS2D01G467300 chr7A 89.286 84 9 0 4134 4217 575284833 575284916 8.350000e-19 106
10 TraesCS2D01G467300 chr4A 82.653 392 53 7 3396 3782 504868332 504868713 3.520000e-87 333
11 TraesCS2D01G467300 chr3B 88.950 181 18 1 3475 3655 736050586 736050764 7.950000e-54 222
12 TraesCS2D01G467300 chr3B 88.950 181 18 1 3475 3655 736073604 736073782 7.950000e-54 222
13 TraesCS2D01G467300 chr3B 88.950 181 18 1 3475 3655 736106602 736106780 7.950000e-54 222
14 TraesCS2D01G467300 chr3B 88.950 181 18 1 3475 3655 736143127 736143305 7.950000e-54 222
15 TraesCS2D01G467300 chr3B 87.293 181 21 1 3475 3655 736015742 736015920 8.000000e-49 206
16 TraesCS2D01G467300 chr6B 75.114 438 98 8 5652 6083 512559462 512559030 1.730000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467300 chr2D 572359609 572365700 6091 True 11250.000000 11250 100.000000 1 6092 1 chr2D.!!$R1 6091
1 TraesCS2D01G467300 chr2A 711635867 711642113 6246 True 2667.666667 7613 87.551667 1 5844 3 chr2A.!!$R1 5843
2 TraesCS2D01G467300 chr2B 687466507 687473690 7183 True 3882.500000 7489 89.526500 714 5970 2 chr2B.!!$R1 5256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 261 0.037447 AAGCACAAAGGCTCTCTCCC 59.963 55.000 0.00 0.00 45.07 4.30 F
422 470 0.106149 CGTAGGGAGGATTTTCCGGG 59.894 60.000 0.00 0.00 42.75 5.73 F
494 542 0.107456 CCCATCATCTCCCTTGTCCG 59.893 60.000 0.00 0.00 0.00 4.79 F
496 544 0.533755 CATCATCTCCCTTGTCCGGC 60.534 60.000 0.00 0.00 0.00 6.13 F
2131 2276 0.393402 TGCAGCTGCCTGTCCAATAG 60.393 55.000 34.64 0.00 41.26 1.73 F
2944 3098 1.202879 AGAAAATCCCACACGCCTTCA 60.203 47.619 0.00 0.00 0.00 3.02 F
4345 4503 0.461516 CGGATGCTGCAGTCATCACT 60.462 55.000 32.80 14.16 41.46 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1665 1.541147 CTTCCACGTGATGCCATTTGT 59.459 47.619 19.3 0.0 0.00 2.83 R
1594 1709 1.603456 TGCACGGAATCACAACACAT 58.397 45.000 0.0 0.0 0.00 3.21 R
1732 1865 2.991190 GACAAGAGCGACGTTAAATGGA 59.009 45.455 0.0 0.0 0.00 3.41 R
2182 2327 3.181474 GGTATGTAGCTCCAGAGTGAACC 60.181 52.174 0.0 0.0 0.00 3.62 R
3805 3961 0.813184 GCACACAGGGATTGATGGTG 59.187 55.000 0.0 0.0 35.66 4.17 R
4890 5048 0.837272 CCTCCCCCGCAAAGAATAGA 59.163 55.000 0.0 0.0 0.00 1.98 R
5602 5783 0.035439 TGGTCGGCTCCCTGAAAATC 60.035 55.000 0.0 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.112709 GTGCGTGCTTCGTCCCTC 61.113 66.667 0.00 0.00 42.13 4.30
54 55 3.032667 GCTTCGTCCCTCCCTTCCC 62.033 68.421 0.00 0.00 0.00 3.97
55 56 2.285144 TTCGTCCCTCCCTTCCCC 60.285 66.667 0.00 0.00 0.00 4.81
56 57 3.937372 TTCGTCCCTCCCTTCCCCC 62.937 68.421 0.00 0.00 0.00 5.40
58 59 4.735599 GTCCCTCCCTTCCCCCGT 62.736 72.222 0.00 0.00 0.00 5.28
130 131 2.327200 GGGAACCGGCCTATATATGC 57.673 55.000 0.00 1.64 40.86 3.14
139 140 1.338674 GCCTATATATGCACGCCACCA 60.339 52.381 5.24 0.00 0.00 4.17
151 152 3.003173 CCACCAGGGCGAGGAGAA 61.003 66.667 0.49 0.00 0.00 2.87
153 154 3.394836 ACCAGGGCGAGGAGAAGC 61.395 66.667 0.49 0.00 0.00 3.86
183 195 2.879233 GCACCGTCCCCAGACAGAA 61.879 63.158 0.00 0.00 43.73 3.02
195 207 2.920912 ACAGAACCCGAGCCCGAA 60.921 61.111 0.00 0.00 38.22 4.30
196 208 2.434359 CAGAACCCGAGCCCGAAC 60.434 66.667 0.00 0.00 38.22 3.95
197 209 4.065281 AGAACCCGAGCCCGAACG 62.065 66.667 0.00 0.00 38.22 3.95
203 215 3.165498 CGAGCCCGAACGGAAAAG 58.835 61.111 15.07 0.00 38.22 2.27
204 216 1.373748 CGAGCCCGAACGGAAAAGA 60.374 57.895 15.07 0.00 38.22 2.52
205 217 1.352156 CGAGCCCGAACGGAAAAGAG 61.352 60.000 15.07 0.00 38.22 2.85
206 218 1.636570 GAGCCCGAACGGAAAAGAGC 61.637 60.000 15.07 8.16 37.50 4.09
207 219 1.671379 GCCCGAACGGAAAAGAGCT 60.671 57.895 15.07 0.00 37.50 4.09
212 224 1.587043 GAACGGAAAAGAGCTGCCCC 61.587 60.000 0.00 0.00 0.00 5.80
213 225 2.751837 CGGAAAAGAGCTGCCCCC 60.752 66.667 0.00 0.00 0.00 5.40
214 226 2.751837 GGAAAAGAGCTGCCCCCG 60.752 66.667 0.00 0.00 0.00 5.73
216 228 1.303317 GAAAAGAGCTGCCCCCGAA 60.303 57.895 0.00 0.00 0.00 4.30
223 235 2.359975 CTGCCCCCGAACCAGAAC 60.360 66.667 0.00 0.00 0.00 3.01
240 252 1.455383 AACGCCAGGAAGCACAAAGG 61.455 55.000 0.00 0.00 0.00 3.11
246 258 1.063183 AGGAAGCACAAAGGCTCTCT 58.937 50.000 0.00 0.00 45.07 3.10
247 259 1.003003 AGGAAGCACAAAGGCTCTCTC 59.997 52.381 0.00 0.00 45.07 3.20
248 260 1.447945 GAAGCACAAAGGCTCTCTCC 58.552 55.000 0.00 0.00 45.07 3.71
249 261 0.037447 AAGCACAAAGGCTCTCTCCC 59.963 55.000 0.00 0.00 45.07 4.30
250 262 0.839853 AGCACAAAGGCTCTCTCCCT 60.840 55.000 0.00 0.00 41.05 4.20
251 263 0.392327 GCACAAAGGCTCTCTCCCTC 60.392 60.000 0.00 0.00 0.00 4.30
252 264 0.251634 CACAAAGGCTCTCTCCCTCC 59.748 60.000 0.00 0.00 0.00 4.30
253 265 0.912006 ACAAAGGCTCTCTCCCTCCC 60.912 60.000 0.00 0.00 0.00 4.30
254 266 1.307430 AAAGGCTCTCTCCCTCCCC 60.307 63.158 0.00 0.00 0.00 4.81
255 267 2.849071 AAAGGCTCTCTCCCTCCCCC 62.849 65.000 0.00 0.00 0.00 5.40
288 321 1.043673 AAATCCCCTCTCCGACTCCG 61.044 60.000 0.00 0.00 0.00 4.63
302 335 0.387202 ACTCCGGCGATTCTGATCTG 59.613 55.000 9.30 0.00 0.00 2.90
305 338 1.220169 CCGGCGATTCTGATCTGCAG 61.220 60.000 9.30 7.63 46.31 4.41
322 370 4.992294 GATCCCTCGCTCGCTCGC 62.992 72.222 0.00 0.00 0.00 5.03
350 398 4.770874 CGTCCACCGCCGGGATTT 62.771 66.667 8.57 0.00 36.67 2.17
351 399 2.822701 GTCCACCGCCGGGATTTC 60.823 66.667 8.57 0.00 36.67 2.17
353 401 4.460683 CCACCGCCGGGATTTCGA 62.461 66.667 8.57 0.00 36.97 3.71
355 403 4.157120 ACCGCCGGGATTTCGAGG 62.157 66.667 8.57 0.00 36.97 4.63
357 405 2.890474 CGCCGGGATTTCGAGGTG 60.890 66.667 2.18 0.00 0.00 4.00
358 406 2.513897 GCCGGGATTTCGAGGTGG 60.514 66.667 2.18 0.00 0.00 4.61
360 408 2.666098 CCGGGATTTCGAGGTGGGT 61.666 63.158 0.00 0.00 0.00 4.51
362 410 1.614241 CGGGATTTCGAGGTGGGTCT 61.614 60.000 0.00 0.00 0.00 3.85
363 411 0.178301 GGGATTTCGAGGTGGGTCTC 59.822 60.000 0.00 0.00 0.00 3.36
375 423 3.453679 GGTCTCGCGGCCTCTCTT 61.454 66.667 6.13 0.00 0.00 2.85
376 424 2.103340 GTCTCGCGGCCTCTCTTC 59.897 66.667 6.13 0.00 0.00 2.87
377 425 2.361230 TCTCGCGGCCTCTCTTCA 60.361 61.111 6.13 0.00 0.00 3.02
378 426 2.103934 CTCGCGGCCTCTCTTCAG 59.896 66.667 6.13 0.00 0.00 3.02
379 427 3.423162 CTCGCGGCCTCTCTTCAGG 62.423 68.421 6.13 0.00 36.50 3.86
380 428 3.452786 CGCGGCCTCTCTTCAGGA 61.453 66.667 0.00 0.00 35.20 3.86
381 429 2.790791 CGCGGCCTCTCTTCAGGAT 61.791 63.158 0.00 0.00 35.20 3.24
383 431 0.107459 GCGGCCTCTCTTCAGGATTT 60.107 55.000 0.00 0.00 35.20 2.17
384 432 1.946745 CGGCCTCTCTTCAGGATTTC 58.053 55.000 0.00 0.00 35.20 2.17
386 434 2.741228 CGGCCTCTCTTCAGGATTTCTG 60.741 54.545 0.00 0.00 44.68 3.02
387 435 2.421248 GGCCTCTCTTCAGGATTTCTGG 60.421 54.545 0.00 0.00 43.53 3.86
388 436 2.916640 CCTCTCTTCAGGATTTCTGGC 58.083 52.381 0.00 0.00 43.53 4.85
389 437 2.238144 CCTCTCTTCAGGATTTCTGGCA 59.762 50.000 0.00 0.00 43.53 4.92
390 438 3.269178 CTCTCTTCAGGATTTCTGGCAC 58.731 50.000 0.00 0.00 43.53 5.01
393 441 0.960364 TTCAGGATTTCTGGCACGGC 60.960 55.000 0.00 0.00 43.53 5.68
413 461 4.791069 GGGTGGGCGTAGGGAGGA 62.791 72.222 0.00 0.00 0.00 3.71
414 462 2.446036 GGTGGGCGTAGGGAGGAT 60.446 66.667 0.00 0.00 0.00 3.24
415 463 2.070650 GGTGGGCGTAGGGAGGATT 61.071 63.158 0.00 0.00 0.00 3.01
416 464 1.632965 GGTGGGCGTAGGGAGGATTT 61.633 60.000 0.00 0.00 0.00 2.17
417 465 0.255033 GTGGGCGTAGGGAGGATTTT 59.745 55.000 0.00 0.00 0.00 1.82
418 466 0.544697 TGGGCGTAGGGAGGATTTTC 59.455 55.000 0.00 0.00 0.00 2.29
419 467 0.179026 GGGCGTAGGGAGGATTTTCC 60.179 60.000 0.00 0.00 36.58 3.13
420 468 0.532196 GGCGTAGGGAGGATTTTCCG 60.532 60.000 0.00 0.00 42.75 4.30
421 469 0.532196 GCGTAGGGAGGATTTTCCGG 60.532 60.000 0.00 0.00 42.75 5.14
422 470 0.106149 CGTAGGGAGGATTTTCCGGG 59.894 60.000 0.00 0.00 42.75 5.73
423 471 0.472898 GTAGGGAGGATTTTCCGGGG 59.527 60.000 0.00 0.00 42.75 5.73
424 472 0.696485 TAGGGAGGATTTTCCGGGGG 60.696 60.000 0.00 0.00 42.75 5.40
425 473 2.123854 GGAGGATTTTCCGGGGGC 60.124 66.667 0.00 0.00 42.75 5.80
426 474 2.680965 GAGGATTTTCCGGGGGCA 59.319 61.111 0.00 0.00 42.75 5.36
427 475 1.453928 GAGGATTTTCCGGGGGCAG 60.454 63.158 0.00 0.00 42.75 4.85
428 476 2.211468 GAGGATTTTCCGGGGGCAGT 62.211 60.000 0.00 0.00 42.75 4.40
429 477 2.052104 GGATTTTCCGGGGGCAGTG 61.052 63.158 0.00 0.00 0.00 3.66
430 478 2.037208 ATTTTCCGGGGGCAGTGG 59.963 61.111 0.00 0.00 0.00 4.00
431 479 3.600410 ATTTTCCGGGGGCAGTGGG 62.600 63.158 0.00 0.00 0.00 4.61
486 534 2.284515 AAACCCGCCCCATCATCTCC 62.285 60.000 0.00 0.00 0.00 3.71
489 537 2.455565 CCGCCCCATCATCTCCCTT 61.456 63.158 0.00 0.00 0.00 3.95
491 539 1.925888 GCCCCATCATCTCCCTTGT 59.074 57.895 0.00 0.00 0.00 3.16
492 540 0.179006 GCCCCATCATCTCCCTTGTC 60.179 60.000 0.00 0.00 0.00 3.18
493 541 0.475906 CCCCATCATCTCCCTTGTCC 59.524 60.000 0.00 0.00 0.00 4.02
494 542 0.107456 CCCATCATCTCCCTTGTCCG 59.893 60.000 0.00 0.00 0.00 4.79
496 544 0.533755 CATCATCTCCCTTGTCCGGC 60.534 60.000 0.00 0.00 0.00 6.13
503 551 2.513897 CCTTGTCCGGCGGGATTC 60.514 66.667 27.98 14.43 46.14 2.52
504 552 2.584608 CTTGTCCGGCGGGATTCT 59.415 61.111 27.98 0.00 46.14 2.40
505 553 1.815421 CTTGTCCGGCGGGATTCTG 60.815 63.158 27.98 8.08 46.14 3.02
506 554 3.969250 TTGTCCGGCGGGATTCTGC 62.969 63.158 27.98 0.00 46.14 4.26
507 555 4.162690 GTCCGGCGGGATTCTGCT 62.163 66.667 27.98 0.00 46.14 4.24
513 561 4.161295 CGGGATTCTGCTGCGGGA 62.161 66.667 8.89 0.00 0.00 5.14
514 562 2.512896 GGGATTCTGCTGCGGGAT 59.487 61.111 8.89 5.05 0.00 3.85
515 563 1.152881 GGGATTCTGCTGCGGGATT 60.153 57.895 8.89 0.00 0.00 3.01
516 564 1.450531 GGGATTCTGCTGCGGGATTG 61.451 60.000 8.89 0.00 0.00 2.67
519 567 4.802051 TCTGCTGCGGGATTGGGC 62.802 66.667 8.89 0.00 0.00 5.36
527 575 3.131478 GGGATTGGGCGTCGGTTG 61.131 66.667 0.00 0.00 0.00 3.77
541 589 1.749258 GGTTGCCCCGAATCCAGTC 60.749 63.158 0.00 0.00 0.00 3.51
545 593 4.891727 CCCCGAATCCAGTCGCGG 62.892 72.222 6.13 0.00 43.20 6.46
549 597 1.296056 CCGAATCCAGTCGCGGTTTT 61.296 55.000 6.13 0.00 39.74 2.43
553 601 0.889186 ATCCAGTCGCGGTTTTGCTT 60.889 50.000 6.13 0.00 0.00 3.91
554 602 1.082104 CCAGTCGCGGTTTTGCTTC 60.082 57.895 6.13 0.00 0.00 3.86
572 625 2.203126 CCCAGATTGAGCGAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
573 626 2.739996 CCCAGATTGAGCGAGCCCT 61.740 63.158 0.00 0.00 0.00 5.19
576 629 1.382420 AGATTGAGCGAGCCCTCCT 60.382 57.895 0.00 0.00 0.00 3.69
603 665 2.768344 GGGATTCCCGGAGCCTCA 60.768 66.667 5.84 0.00 32.13 3.86
605 667 2.107141 GATTCCCGGAGCCTCACG 59.893 66.667 0.73 0.00 0.00 4.35
636 728 2.813474 CCGCGTTTGCCTGATCGA 60.813 61.111 4.92 0.00 38.08 3.59
638 730 1.495509 CGCGTTTGCCTGATCGAAA 59.504 52.632 0.00 0.00 38.08 3.46
649 741 7.441890 TTGCCTGATCGAAACTGTTTAATTA 57.558 32.000 5.64 0.00 0.00 1.40
651 743 8.050778 TGCCTGATCGAAACTGTTTAATTAAT 57.949 30.769 5.64 0.00 0.00 1.40
653 745 8.181573 GCCTGATCGAAACTGTTTAATTAATCA 58.818 33.333 5.64 8.35 0.00 2.57
656 748 9.834628 TGATCGAAACTGTTTAATTAATCAACC 57.165 29.630 5.64 1.03 0.00 3.77
657 749 9.285770 GATCGAAACTGTTTAATTAATCAACCC 57.714 33.333 5.64 1.29 0.00 4.11
659 751 8.852135 TCGAAACTGTTTAATTAATCAACCCTT 58.148 29.630 5.64 2.63 0.00 3.95
660 752 9.471084 CGAAACTGTTTAATTAATCAACCCTTT 57.529 29.630 5.64 5.88 0.00 3.11
686 778 2.854963 TCTGTCTGATTTTGCAGTGCT 58.145 42.857 17.60 0.00 37.20 4.40
687 779 2.551032 TCTGTCTGATTTTGCAGTGCTG 59.449 45.455 17.60 0.00 37.20 4.41
688 780 2.551032 CTGTCTGATTTTGCAGTGCTGA 59.449 45.455 17.60 1.82 37.20 4.26
689 781 2.551032 TGTCTGATTTTGCAGTGCTGAG 59.449 45.455 17.60 0.00 37.20 3.35
690 782 1.538512 TCTGATTTTGCAGTGCTGAGC 59.461 47.619 17.60 0.00 37.20 4.26
691 783 1.540267 CTGATTTTGCAGTGCTGAGCT 59.460 47.619 17.60 0.00 0.00 4.09
692 784 1.268625 TGATTTTGCAGTGCTGAGCTG 59.731 47.619 17.60 0.00 37.06 4.24
697 789 2.346365 CAGTGCTGAGCTGCTCCA 59.654 61.111 25.61 14.97 0.00 3.86
698 790 1.742140 CAGTGCTGAGCTGCTCCAG 60.742 63.158 25.61 21.52 34.12 3.86
709 801 3.512516 GCTCCAGCATCCAACCGC 61.513 66.667 0.00 0.00 41.59 5.68
710 802 2.046023 CTCCAGCATCCAACCGCA 60.046 61.111 0.00 0.00 0.00 5.69
711 803 2.359850 TCCAGCATCCAACCGCAC 60.360 61.111 0.00 0.00 0.00 5.34
712 804 3.443045 CCAGCATCCAACCGCACC 61.443 66.667 0.00 0.00 0.00 5.01
713 805 3.803082 CAGCATCCAACCGCACCG 61.803 66.667 0.00 0.00 0.00 4.94
776 868 0.822164 CCGTGAATTCCTACGAGGGT 59.178 55.000 17.22 0.00 42.54 4.34
947 1045 6.854778 AGTAGAAGTAATCGTCAAGAAGGAC 58.145 40.000 0.00 0.00 34.42 3.85
957 1055 4.020218 TCGTCAAGAAGGACAATCCAATCT 60.020 41.667 0.00 0.00 39.61 2.40
1022 1120 2.610374 TGGCGAACAACAACAGTAAGTC 59.390 45.455 0.00 0.00 0.00 3.01
1023 1121 2.032290 GGCGAACAACAACAGTAAGTCC 60.032 50.000 0.00 0.00 0.00 3.85
1028 1126 2.949644 ACAACAACAGTAAGTCCCTTGC 59.050 45.455 0.00 0.00 0.00 4.01
1036 1135 2.835156 AGTAAGTCCCTTGCTCTTCTCC 59.165 50.000 0.00 0.00 31.08 3.71
1049 1148 3.338249 CTCTTCTCCGCAGATTTTTCCA 58.662 45.455 0.00 0.00 0.00 3.53
1050 1149 3.074412 TCTTCTCCGCAGATTTTTCCAC 58.926 45.455 0.00 0.00 0.00 4.02
1051 1150 2.559698 TCTCCGCAGATTTTTCCACA 57.440 45.000 0.00 0.00 0.00 4.17
1053 1152 2.749076 TCTCCGCAGATTTTTCCACATG 59.251 45.455 0.00 0.00 0.00 3.21
1054 1153 2.489329 CTCCGCAGATTTTTCCACATGT 59.511 45.455 0.00 0.00 0.00 3.21
1055 1154 3.680490 TCCGCAGATTTTTCCACATGTA 58.320 40.909 0.00 0.00 0.00 2.29
1056 1155 3.689161 TCCGCAGATTTTTCCACATGTAG 59.311 43.478 0.00 0.00 0.00 2.74
1057 1156 3.440173 CCGCAGATTTTTCCACATGTAGT 59.560 43.478 0.00 0.00 0.00 2.73
1060 1159 5.351465 CGCAGATTTTTCCACATGTAGTAGT 59.649 40.000 0.00 0.00 0.00 2.73
1061 1160 6.546395 GCAGATTTTTCCACATGTAGTAGTG 58.454 40.000 0.00 0.00 35.56 2.74
1062 1161 6.149474 GCAGATTTTTCCACATGTAGTAGTGT 59.851 38.462 0.00 0.00 33.99 3.55
1063 1162 7.308589 GCAGATTTTTCCACATGTAGTAGTGTT 60.309 37.037 0.00 0.00 33.99 3.32
1064 1163 8.567948 CAGATTTTTCCACATGTAGTAGTGTTT 58.432 33.333 0.00 0.00 33.99 2.83
1065 1164 9.131791 AGATTTTTCCACATGTAGTAGTGTTTT 57.868 29.630 0.00 0.00 33.99 2.43
1066 1165 9.744468 GATTTTTCCACATGTAGTAGTGTTTTT 57.256 29.630 0.00 0.00 33.99 1.94
1067 1166 9.744468 ATTTTTCCACATGTAGTAGTGTTTTTC 57.256 29.630 0.00 0.00 33.99 2.29
1068 1167 8.514330 TTTTCCACATGTAGTAGTGTTTTTCT 57.486 30.769 0.00 0.00 33.99 2.52
1069 1168 8.514330 TTTCCACATGTAGTAGTGTTTTTCTT 57.486 30.769 0.00 0.00 33.99 2.52
1070 1169 9.616156 TTTCCACATGTAGTAGTGTTTTTCTTA 57.384 29.630 0.00 0.00 33.99 2.10
1071 1170 8.827177 TCCACATGTAGTAGTGTTTTTCTTAG 57.173 34.615 0.00 0.00 33.99 2.18
1072 1171 8.644216 TCCACATGTAGTAGTGTTTTTCTTAGA 58.356 33.333 0.00 0.00 33.99 2.10
1073 1172 9.436957 CCACATGTAGTAGTGTTTTTCTTAGAT 57.563 33.333 0.00 0.00 33.99 1.98
1088 1187 5.991328 TCTTAGATTAGGCATTGCTTTCG 57.009 39.130 8.82 0.00 0.00 3.46
1089 1188 4.273480 TCTTAGATTAGGCATTGCTTTCGC 59.727 41.667 8.82 0.00 0.00 4.70
1102 1201 1.727335 GCTTTCGCAACACTAGACTCC 59.273 52.381 0.00 0.00 35.78 3.85
1112 1211 5.693814 CAACACTAGACTCCTTTTCAATGC 58.306 41.667 0.00 0.00 0.00 3.56
1113 1212 4.973168 ACACTAGACTCCTTTTCAATGCA 58.027 39.130 0.00 0.00 0.00 3.96
1114 1213 5.564550 ACACTAGACTCCTTTTCAATGCAT 58.435 37.500 0.00 0.00 0.00 3.96
1116 1215 6.150140 ACACTAGACTCCTTTTCAATGCATTC 59.850 38.462 9.53 0.00 0.00 2.67
1117 1216 6.373774 CACTAGACTCCTTTTCAATGCATTCT 59.626 38.462 9.53 2.12 0.00 2.40
1137 1236 7.670097 GCATTCTTAGTGCACAAATCGAATTTG 60.670 37.037 21.04 14.68 42.57 2.32
1191 1290 3.988379 TTTGTCATGCCAAACACTCTC 57.012 42.857 0.00 0.00 29.67 3.20
1192 1291 2.936919 TGTCATGCCAAACACTCTCT 57.063 45.000 0.00 0.00 0.00 3.10
1193 1292 4.350368 TTGTCATGCCAAACACTCTCTA 57.650 40.909 0.00 0.00 0.00 2.43
1194 1293 3.664107 TGTCATGCCAAACACTCTCTAC 58.336 45.455 0.00 0.00 0.00 2.59
1195 1294 3.324846 TGTCATGCCAAACACTCTCTACT 59.675 43.478 0.00 0.00 0.00 2.57
1196 1295 4.526650 TGTCATGCCAAACACTCTCTACTA 59.473 41.667 0.00 0.00 0.00 1.82
1197 1296 4.865365 GTCATGCCAAACACTCTCTACTAC 59.135 45.833 0.00 0.00 0.00 2.73
1198 1297 4.772624 TCATGCCAAACACTCTCTACTACT 59.227 41.667 0.00 0.00 0.00 2.57
1199 1298 4.521130 TGCCAAACACTCTCTACTACTG 57.479 45.455 0.00 0.00 0.00 2.74
1441 1541 0.618458 GGTTGTGGAGTCCCATGCTA 59.382 55.000 6.74 0.00 45.68 3.49
1466 1566 4.732285 TTTAGCGCTGAATATTAGCTGC 57.268 40.909 22.90 15.23 39.00 5.25
1495 1595 2.047061 TGTCCACACAGGCTTCTTACT 58.953 47.619 0.00 0.00 37.29 2.24
1609 1742 5.605564 TTTACTCATGTGTTGTGATTCCG 57.394 39.130 5.63 0.00 0.00 4.30
1786 1919 4.142609 AGAACACTTTGCTCTTGTCAGA 57.857 40.909 0.00 0.00 0.00 3.27
1948 2085 5.392767 TGTCTTGTCTAAAGCTAGGTCTG 57.607 43.478 0.00 0.00 0.00 3.51
2051 2196 5.511373 CCAATGTCTCACTTGTAAGGACAGA 60.511 44.000 0.00 0.00 39.70 3.41
2131 2276 0.393402 TGCAGCTGCCTGTCCAATAG 60.393 55.000 34.64 0.00 41.26 1.73
2182 2327 6.260271 TCTGTCATACTCGTACACATTAGAGG 59.740 42.308 0.00 0.00 35.22 3.69
2724 2873 4.202441 CTCTGGTAGATGTCCCCAAAATG 58.798 47.826 0.00 0.00 0.00 2.32
2799 2949 4.206477 TCACTTGTACATGGACAGATGG 57.794 45.455 18.66 10.74 0.00 3.51
2944 3098 1.202879 AGAAAATCCCACACGCCTTCA 60.203 47.619 0.00 0.00 0.00 3.02
3439 3595 5.013495 TGGAGATGACTCTGTCCTTTTTGAT 59.987 40.000 0.00 0.00 42.28 2.57
3526 3682 8.746052 AATAAGGCTGCAACTAACATGTTATA 57.254 30.769 18.35 4.95 0.00 0.98
3617 3773 5.717119 AGGGAAAGTGTTTGAGGCTATAT 57.283 39.130 0.00 0.00 0.00 0.86
3632 3788 8.736097 TGAGGCTATATTGGAAGAGGTAATTA 57.264 34.615 0.00 0.00 0.00 1.40
3663 3819 9.077885 TCTCAGTTCTTGGTGCTTATTTATTTT 57.922 29.630 0.00 0.00 0.00 1.82
3670 3826 8.313292 TCTTGGTGCTTATTTATTTTTGCTGAT 58.687 29.630 0.00 0.00 0.00 2.90
3682 3838 9.651913 TTTATTTTTGCTGATATTTCTTGGGTC 57.348 29.630 0.00 0.00 0.00 4.46
3702 3858 5.765182 GGGTCTTGATATCCTGTAACATTGG 59.235 44.000 0.00 0.00 0.00 3.16
3785 3941 3.998341 CCATTGCAATTGTTTTGGAGAGG 59.002 43.478 9.83 0.00 0.00 3.69
3805 3961 1.464997 GAATCCACACTTGAGGTTCGC 59.535 52.381 0.00 0.00 0.00 4.70
3835 3993 2.225068 CCTGTGTGCTTAGGGTATCG 57.775 55.000 0.00 0.00 0.00 2.92
4002 4160 2.434702 CAGGTAGTATTCACACCCCTCC 59.565 54.545 0.00 0.00 32.43 4.30
4120 4278 2.061773 CTCATGGTTCGTGGATATCGC 58.938 52.381 0.00 0.00 0.00 4.58
4168 4326 4.463186 GGTCTAGATATACGCCTTGGTCAT 59.537 45.833 0.00 0.00 0.00 3.06
4224 4382 1.165270 GAACATGGTTCCACCTTCCG 58.835 55.000 0.00 0.00 39.58 4.30
4312 4470 3.610911 AGAGGTTACTGTAAGCAATGGC 58.389 45.455 26.04 12.80 37.60 4.40
4345 4503 0.461516 CGGATGCTGCAGTCATCACT 60.462 55.000 32.80 14.16 41.46 3.41
4651 4809 1.764851 CGGCTCAATTTGCGTTTTCA 58.235 45.000 0.00 0.00 0.00 2.69
4705 4863 2.006888 CCGGTTAGCATTTCGACACAT 58.993 47.619 0.00 0.00 0.00 3.21
4836 4994 2.619074 GCTTGGCTCCTACACCTTTGAT 60.619 50.000 0.00 0.00 0.00 2.57
4839 4997 1.282157 GGCTCCTACACCTTTGATGGT 59.718 52.381 0.00 0.00 41.77 3.55
4890 5048 1.153369 CCGCATCCCTGTCGACAAT 60.153 57.895 20.49 7.59 0.00 2.71
4902 5060 4.259970 CCTGTCGACAATCTATTCTTTGCG 60.260 45.833 20.49 2.21 0.00 4.85
4968 5126 4.731853 TCCACGGGGGAGATGGCA 62.732 66.667 2.42 0.00 42.15 4.92
5016 5174 1.836802 GAGAAGTTCAGGGAGCTGGAT 59.163 52.381 5.50 0.00 0.00 3.41
5098 5256 0.391263 CTCCCGGCTGTAAACAGTCC 60.391 60.000 9.03 10.38 45.29 3.85
5164 5322 3.002791 GTTCATTCCAGTGATTGCTCGA 58.997 45.455 0.00 0.00 0.00 4.04
5344 5511 1.689984 GTAAGGAGCTACGGCCTACT 58.310 55.000 0.00 0.00 39.73 2.57
5482 5663 4.901814 ACTCAAAATCGAATCTGATTGCG 58.098 39.130 7.78 10.94 38.54 4.85
5485 5666 3.575858 AAATCGAATCTGATTGCGTCG 57.424 42.857 7.78 5.40 38.54 5.12
5502 5683 3.488489 CGTCGAAACCATTTGTGATTCC 58.512 45.455 0.00 0.00 0.00 3.01
5585 5766 2.487762 CCAAATGCCAACGTACATGTCT 59.512 45.455 0.00 0.00 0.00 3.41
5658 6420 2.349755 GTAGCCGGTGCCTCCAAA 59.650 61.111 1.90 0.00 38.69 3.28
5671 6433 2.813354 GCCTCCAAAGCCTCATCCATAG 60.813 54.545 0.00 0.00 0.00 2.23
5689 6451 4.710167 TCGCGTCCTCCTCGTCCA 62.710 66.667 5.77 0.00 0.00 4.02
5734 7898 1.134560 GAAGCTCTCCCGACGTAATGT 59.865 52.381 0.00 0.00 0.00 2.71
5746 7910 1.822186 GTAATGTGGGCCGCGGATT 60.822 57.895 33.48 21.35 0.00 3.01
5780 7944 0.682852 TCCACCTCGACCGTGATTTT 59.317 50.000 9.04 0.00 32.77 1.82
5783 7947 1.194547 CACCTCGACCGTGATTTTGTG 59.805 52.381 2.32 0.00 32.77 3.33
5789 7953 2.642129 CGTGATTTTGTGGCGGCA 59.358 55.556 7.97 7.97 0.00 5.69
5840 8004 0.409092 TGGGTCCCAACATTGCTCAT 59.591 50.000 8.65 0.00 0.00 2.90
5848 8012 1.399440 CAACATTGCTCATGGAGGTCG 59.601 52.381 0.00 0.00 37.17 4.79
5866 8030 2.093921 GTCGAAGAAGGAAGAAGGGAGG 60.094 54.545 0.00 0.00 39.69 4.30
5869 8033 2.442262 AGAAGGAAGAAGGGAGGGTT 57.558 50.000 0.00 0.00 0.00 4.11
5871 8035 1.004862 GAAGGAAGAAGGGAGGGTTGG 59.995 57.143 0.00 0.00 0.00 3.77
5890 8054 2.363147 GGCTCGGACAGAGGGAGT 60.363 66.667 4.72 0.00 46.91 3.85
5893 8057 2.045242 TCGGACAGAGGGAGTCGG 60.045 66.667 0.00 0.00 36.87 4.79
5911 8075 2.722201 GGGCTCGGAGGTGGTGTAG 61.722 68.421 7.20 0.00 0.00 2.74
5920 8084 0.534203 AGGTGGTGTAGTTTGTGCCG 60.534 55.000 0.00 0.00 0.00 5.69
5928 8092 4.322385 GTTTGTGCCGTGGCCGAC 62.322 66.667 8.69 1.15 41.09 4.79
5945 8109 3.425858 GCCGACGATCTTCAAATAGTAGC 59.574 47.826 0.00 0.00 0.00 3.58
5946 8110 4.607955 CCGACGATCTTCAAATAGTAGCA 58.392 43.478 0.00 0.00 0.00 3.49
5947 8111 4.441415 CCGACGATCTTCAAATAGTAGCAC 59.559 45.833 0.00 0.00 0.00 4.40
5948 8112 4.441415 CGACGATCTTCAAATAGTAGCACC 59.559 45.833 0.00 0.00 0.00 5.01
5982 8146 3.568093 GCAACGGCTTGAATGTGTT 57.432 47.368 1.62 0.00 36.96 3.32
5983 8147 1.408422 GCAACGGCTTGAATGTGTTC 58.592 50.000 1.62 0.00 36.96 3.18
5984 8148 1.673760 CAACGGCTTGAATGTGTTCG 58.326 50.000 0.00 0.00 37.15 3.95
5985 8149 0.591170 AACGGCTTGAATGTGTTCGG 59.409 50.000 0.00 0.00 37.15 4.30
5986 8150 1.154225 CGGCTTGAATGTGTTCGGC 60.154 57.895 0.00 0.00 37.15 5.54
5987 8151 1.154225 GGCTTGAATGTGTTCGGCG 60.154 57.895 0.00 0.00 36.91 6.46
5988 8152 1.573829 GGCTTGAATGTGTTCGGCGA 61.574 55.000 4.99 4.99 36.91 5.54
5989 8153 0.179215 GCTTGAATGTGTTCGGCGAG 60.179 55.000 10.46 0.00 37.15 5.03
5990 8154 1.428448 CTTGAATGTGTTCGGCGAGA 58.572 50.000 10.46 0.00 37.15 4.04
5991 8155 2.002586 CTTGAATGTGTTCGGCGAGAT 58.997 47.619 10.46 0.00 37.15 2.75
5992 8156 2.093306 TGAATGTGTTCGGCGAGATT 57.907 45.000 10.46 7.42 37.15 2.40
5993 8157 1.731709 TGAATGTGTTCGGCGAGATTG 59.268 47.619 10.46 0.00 37.15 2.67
5994 8158 1.062587 GAATGTGTTCGGCGAGATTGG 59.937 52.381 10.46 0.00 0.00 3.16
5995 8159 1.369091 ATGTGTTCGGCGAGATTGGC 61.369 55.000 10.46 0.00 0.00 4.52
5996 8160 1.741770 GTGTTCGGCGAGATTGGCT 60.742 57.895 10.46 0.00 0.00 4.75
5997 8161 1.003839 TGTTCGGCGAGATTGGCTT 60.004 52.632 10.46 0.00 0.00 4.35
5998 8162 1.019278 TGTTCGGCGAGATTGGCTTC 61.019 55.000 10.46 0.00 0.00 3.86
5999 8163 0.741221 GTTCGGCGAGATTGGCTTCT 60.741 55.000 10.46 0.00 0.00 2.85
6000 8164 0.460284 TTCGGCGAGATTGGCTTCTC 60.460 55.000 10.46 7.66 39.03 2.87
6006 8170 0.647925 GAGATTGGCTTCTCGTTCGC 59.352 55.000 2.95 0.00 33.35 4.70
6007 8171 0.741221 AGATTGGCTTCTCGTTCGCC 60.741 55.000 0.00 0.00 44.02 5.54
6008 8172 2.025359 GATTGGCTTCTCGTTCGCCG 62.025 60.000 0.00 0.00 46.67 6.46
6030 8194 3.474806 GACGTGAATGTCGGGCAG 58.525 61.111 0.00 0.00 0.00 4.85
6031 8195 2.047274 ACGTGAATGTCGGGCAGG 60.047 61.111 0.00 0.00 0.00 4.85
6032 8196 3.499737 CGTGAATGTCGGGCAGGC 61.500 66.667 0.00 0.00 0.00 4.85
6033 8197 3.499737 GTGAATGTCGGGCAGGCG 61.500 66.667 0.00 0.00 0.00 5.52
6034 8198 4.776322 TGAATGTCGGGCAGGCGG 62.776 66.667 0.00 0.00 0.00 6.13
6035 8199 4.467084 GAATGTCGGGCAGGCGGA 62.467 66.667 0.00 0.00 0.00 5.54
6036 8200 4.778143 AATGTCGGGCAGGCGGAC 62.778 66.667 23.37 23.37 0.00 4.79
6058 8222 3.425422 GGCTAGCCCGCTTGAATG 58.575 61.111 24.19 0.00 0.00 2.67
6059 8223 2.718107 GCTAGCCCGCTTGAATGC 59.282 61.111 2.29 0.00 0.00 3.56
6069 8233 2.677559 GCTTGAATGCGATAGGAAGC 57.322 50.000 0.00 0.00 42.54 3.86
6070 8234 1.265365 GCTTGAATGCGATAGGAAGCC 59.735 52.381 0.00 0.00 42.54 4.35
6071 8235 1.528586 CTTGAATGCGATAGGAAGCCG 59.471 52.381 0.00 0.00 42.54 5.52
6072 8236 0.464036 TGAATGCGATAGGAAGCCGT 59.536 50.000 0.00 0.00 42.54 5.68
6073 8237 1.140816 GAATGCGATAGGAAGCCGTC 58.859 55.000 0.00 0.00 42.54 4.79
6087 8251 4.477975 CGTCCCGTCGCCTCAGTC 62.478 72.222 0.00 0.00 0.00 3.51
6088 8252 3.371063 GTCCCGTCGCCTCAGTCA 61.371 66.667 0.00 0.00 0.00 3.41
6089 8253 2.362503 TCCCGTCGCCTCAGTCAT 60.363 61.111 0.00 0.00 0.00 3.06
6090 8254 2.202797 CCCGTCGCCTCAGTCATG 60.203 66.667 0.00 0.00 0.00 3.07
6091 8255 2.573869 CCGTCGCCTCAGTCATGT 59.426 61.111 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.285144 GGGGAAGGGAGGGACGAA 60.285 66.667 0.00 0.00 0.00 3.85
41 42 4.735599 ACGGGGGAAGGGAGGGAC 62.736 72.222 0.00 0.00 0.00 4.46
113 114 2.268298 CGTGCATATATAGGCCGGTTC 58.732 52.381 16.23 0.00 30.87 3.62
117 118 2.677971 GGCGTGCATATATAGGCCG 58.322 57.895 16.23 17.98 37.98 6.13
118 119 1.369625 GTGGCGTGCATATATAGGCC 58.630 55.000 16.23 10.90 45.48 5.19
143 144 1.743252 GCTGTTGGGCTTCTCCTCG 60.743 63.158 0.00 0.00 34.39 4.63
145 146 0.538287 GTTGCTGTTGGGCTTCTCCT 60.538 55.000 0.00 0.00 34.39 3.69
147 148 1.576421 CGTTGCTGTTGGGCTTCTC 59.424 57.895 0.00 0.00 0.00 2.87
148 149 2.555547 GCGTTGCTGTTGGGCTTCT 61.556 57.895 0.00 0.00 0.00 2.85
149 150 2.050077 GCGTTGCTGTTGGGCTTC 60.050 61.111 0.00 0.00 0.00 3.86
151 152 3.595758 GTGCGTTGCTGTTGGGCT 61.596 61.111 0.00 0.00 0.00 5.19
153 154 4.326766 CGGTGCGTTGCTGTTGGG 62.327 66.667 0.00 0.00 0.00 4.12
154 155 3.521308 GACGGTGCGTTGCTGTTGG 62.521 63.158 0.00 0.00 41.37 3.77
195 207 2.034221 GGGGCAGCTCTTTTCCGT 59.966 61.111 0.00 0.00 0.00 4.69
196 208 2.751837 GGGGGCAGCTCTTTTCCG 60.752 66.667 0.00 0.00 0.00 4.30
197 209 2.751837 CGGGGGCAGCTCTTTTCC 60.752 66.667 0.00 0.00 0.00 3.13
198 210 1.303317 TTCGGGGGCAGCTCTTTTC 60.303 57.895 0.00 0.00 0.00 2.29
199 211 1.603739 GTTCGGGGGCAGCTCTTTT 60.604 57.895 0.00 0.00 0.00 2.27
200 212 2.034221 GTTCGGGGGCAGCTCTTT 59.966 61.111 0.00 0.00 0.00 2.52
201 213 4.035102 GGTTCGGGGGCAGCTCTT 62.035 66.667 0.00 0.00 0.00 2.85
203 215 4.785453 CTGGTTCGGGGGCAGCTC 62.785 72.222 0.00 0.00 0.00 4.09
205 217 4.344865 TTCTGGTTCGGGGGCAGC 62.345 66.667 0.00 0.00 0.00 5.25
206 218 2.359975 GTTCTGGTTCGGGGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
207 219 4.323477 CGTTCTGGTTCGGGGGCA 62.323 66.667 0.00 0.00 0.00 5.36
212 224 2.725203 TTCCTGGCGTTCTGGTTCGG 62.725 60.000 0.00 0.00 36.08 4.30
213 225 1.291877 CTTCCTGGCGTTCTGGTTCG 61.292 60.000 0.00 0.00 36.08 3.95
214 226 1.578206 GCTTCCTGGCGTTCTGGTTC 61.578 60.000 0.00 0.00 36.08 3.62
216 228 2.032681 GCTTCCTGGCGTTCTGGT 59.967 61.111 0.00 0.00 36.08 4.00
221 233 1.455383 CCTTTGTGCTTCCTGGCGTT 61.455 55.000 0.00 0.00 34.52 4.84
223 235 2.956987 CCTTTGTGCTTCCTGGCG 59.043 61.111 0.00 0.00 34.52 5.69
225 237 0.251077 AGAGCCTTTGTGCTTCCTGG 60.251 55.000 0.00 0.00 42.95 4.45
226 238 1.163554 GAGAGCCTTTGTGCTTCCTG 58.836 55.000 0.00 0.00 42.95 3.86
252 264 1.374572 TTTTAGTAGGTGGGTGGGGG 58.625 55.000 0.00 0.00 0.00 5.40
253 265 2.092049 GGATTTTAGTAGGTGGGTGGGG 60.092 54.545 0.00 0.00 0.00 4.96
254 266 2.092049 GGGATTTTAGTAGGTGGGTGGG 60.092 54.545 0.00 0.00 0.00 4.61
255 267 2.092049 GGGGATTTTAGTAGGTGGGTGG 60.092 54.545 0.00 0.00 0.00 4.61
302 335 3.839642 GAGCGAGCGAGGGATCTGC 62.840 68.421 0.00 0.00 0.00 4.26
305 338 4.992294 GCGAGCGAGCGAGGGATC 62.992 72.222 1.41 0.00 0.00 3.36
337 385 2.890474 CTCGAAATCCCGGCGGTG 60.890 66.667 26.32 16.42 0.00 4.94
339 387 4.157120 ACCTCGAAATCCCGGCGG 62.157 66.667 21.46 21.46 0.00 6.13
340 388 2.890474 CACCTCGAAATCCCGGCG 60.890 66.667 0.00 0.00 0.00 6.46
341 389 2.513897 CCACCTCGAAATCCCGGC 60.514 66.667 0.00 0.00 0.00 6.13
342 390 2.189521 CCCACCTCGAAATCCCGG 59.810 66.667 0.00 0.00 0.00 5.73
343 391 1.153429 GACCCACCTCGAAATCCCG 60.153 63.158 0.00 0.00 0.00 5.14
358 406 3.418744 GAAGAGAGGCCGCGAGACC 62.419 68.421 8.23 6.11 0.00 3.85
360 408 2.361230 TGAAGAGAGGCCGCGAGA 60.361 61.111 8.23 0.00 0.00 4.04
362 410 3.452786 CCTGAAGAGAGGCCGCGA 61.453 66.667 8.23 0.00 0.00 5.87
363 411 2.303549 AATCCTGAAGAGAGGCCGCG 62.304 60.000 0.00 0.00 32.51 6.46
365 413 1.484240 AGAAATCCTGAAGAGAGGCCG 59.516 52.381 0.00 0.00 32.51 6.13
366 414 2.421248 CCAGAAATCCTGAAGAGAGGCC 60.421 54.545 0.00 0.00 45.78 5.19
367 415 2.916640 CCAGAAATCCTGAAGAGAGGC 58.083 52.381 0.00 0.00 45.78 4.70
368 416 2.238144 TGCCAGAAATCCTGAAGAGAGG 59.762 50.000 0.00 0.00 45.78 3.69
369 417 3.269178 GTGCCAGAAATCCTGAAGAGAG 58.731 50.000 0.00 0.00 45.78 3.20
370 418 2.354103 CGTGCCAGAAATCCTGAAGAGA 60.354 50.000 0.00 0.00 45.78 3.10
372 420 1.339055 CCGTGCCAGAAATCCTGAAGA 60.339 52.381 0.00 0.00 45.78 2.87
373 421 1.089920 CCGTGCCAGAAATCCTGAAG 58.910 55.000 0.00 0.00 45.78 3.02
374 422 0.960364 GCCGTGCCAGAAATCCTGAA 60.960 55.000 0.00 0.00 45.78 3.02
375 423 1.377202 GCCGTGCCAGAAATCCTGA 60.377 57.895 0.00 0.00 45.78 3.86
376 424 3.190878 GCCGTGCCAGAAATCCTG 58.809 61.111 0.00 0.00 42.55 3.86
396 444 4.791069 TCCTCCCTACGCCCACCC 62.791 72.222 0.00 0.00 0.00 4.61
397 445 1.632965 AAATCCTCCCTACGCCCACC 61.633 60.000 0.00 0.00 0.00 4.61
399 447 0.544697 GAAAATCCTCCCTACGCCCA 59.455 55.000 0.00 0.00 0.00 5.36
402 450 0.532196 CCGGAAAATCCTCCCTACGC 60.532 60.000 0.00 0.00 33.30 4.42
403 451 0.106149 CCCGGAAAATCCTCCCTACG 59.894 60.000 0.73 0.00 33.30 3.51
404 452 0.472898 CCCCGGAAAATCCTCCCTAC 59.527 60.000 0.73 0.00 33.30 3.18
406 454 2.006991 CCCCCGGAAAATCCTCCCT 61.007 63.158 0.73 0.00 33.30 4.20
409 457 1.453928 CTGCCCCCGGAAAATCCTC 60.454 63.158 0.73 0.00 33.30 3.71
410 458 2.238701 ACTGCCCCCGGAAAATCCT 61.239 57.895 0.73 0.00 33.30 3.24
411 459 2.052104 CACTGCCCCCGGAAAATCC 61.052 63.158 0.73 0.00 0.00 3.01
412 460 2.052104 CCACTGCCCCCGGAAAATC 61.052 63.158 0.73 0.00 0.00 2.17
413 461 2.037208 CCACTGCCCCCGGAAAAT 59.963 61.111 0.73 0.00 0.00 1.82
414 462 4.293671 CCCACTGCCCCCGGAAAA 62.294 66.667 0.73 0.00 0.00 2.29
444 492 4.864334 CTAGGGCCGGCCAAGCAG 62.864 72.222 44.46 29.53 37.98 4.24
470 518 3.958860 GGGAGATGATGGGGCGGG 61.959 72.222 0.00 0.00 0.00 6.13
471 519 2.455565 AAGGGAGATGATGGGGCGG 61.456 63.158 0.00 0.00 0.00 6.13
472 520 1.228063 CAAGGGAGATGATGGGGCG 60.228 63.158 0.00 0.00 0.00 6.13
475 523 0.107456 CGGACAAGGGAGATGATGGG 59.893 60.000 0.00 0.00 0.00 4.00
477 525 0.533755 GCCGGACAAGGGAGATGATG 60.534 60.000 5.05 0.00 0.00 3.07
486 534 2.513897 GAATCCCGCCGGACAAGG 60.514 66.667 5.05 1.51 42.48 3.61
489 537 4.467084 GCAGAATCCCGCCGGACA 62.467 66.667 5.05 0.00 42.48 4.02
491 539 4.161295 CAGCAGAATCCCGCCGGA 62.161 66.667 5.05 0.00 44.33 5.14
496 544 2.947938 AATCCCGCAGCAGAATCCCG 62.948 60.000 0.00 0.00 0.00 5.14
499 547 1.450531 CCCAATCCCGCAGCAGAATC 61.451 60.000 0.00 0.00 0.00 2.52
501 549 2.045045 CCCAATCCCGCAGCAGAA 60.045 61.111 0.00 0.00 0.00 3.02
509 557 4.770874 AACCGACGCCCAATCCCG 62.771 66.667 0.00 0.00 0.00 5.14
510 558 3.131478 CAACCGACGCCCAATCCC 61.131 66.667 0.00 0.00 0.00 3.85
511 559 3.810896 GCAACCGACGCCCAATCC 61.811 66.667 0.00 0.00 0.00 3.01
512 560 3.810896 GGCAACCGACGCCCAATC 61.811 66.667 0.00 0.00 44.22 2.67
530 578 1.296056 AAAACCGCGACTGGATTCGG 61.296 55.000 8.23 0.00 46.61 4.30
532 580 0.454452 GCAAAACCGCGACTGGATTC 60.454 55.000 8.23 0.00 0.00 2.52
533 581 0.889186 AGCAAAACCGCGACTGGATT 60.889 50.000 8.23 0.00 36.85 3.01
535 583 1.503818 GAAGCAAAACCGCGACTGGA 61.504 55.000 8.23 0.00 36.85 3.86
536 584 1.082104 GAAGCAAAACCGCGACTGG 60.082 57.895 8.23 0.00 36.85 4.00
538 586 2.258726 GGGAAGCAAAACCGCGACT 61.259 57.895 8.23 0.00 36.85 4.18
541 589 3.267597 CTGGGGAAGCAAAACCGCG 62.268 63.158 0.00 0.00 41.11 6.46
545 593 2.353109 GCTCAATCTGGGGAAGCAAAAC 60.353 50.000 0.00 0.00 0.00 2.43
549 597 1.078214 CGCTCAATCTGGGGAAGCA 60.078 57.895 0.00 0.00 0.00 3.91
553 601 2.735772 GGCTCGCTCAATCTGGGGA 61.736 63.158 0.00 0.00 0.00 4.81
554 602 2.203126 GGCTCGCTCAATCTGGGG 60.203 66.667 0.00 0.00 0.00 4.96
588 650 2.107141 CGTGAGGCTCCGGGAATC 59.893 66.667 12.86 0.00 0.00 2.52
616 678 2.746277 ATCAGGCAAACGCGGTCC 60.746 61.111 12.47 1.24 0.00 4.46
618 680 3.118454 CGATCAGGCAAACGCGGT 61.118 61.111 12.47 0.00 0.00 5.68
620 682 0.789383 GTTTCGATCAGGCAAACGCG 60.789 55.000 3.53 3.53 0.00 6.01
621 683 0.517316 AGTTTCGATCAGGCAAACGC 59.483 50.000 0.00 0.00 35.55 4.84
622 684 1.531149 ACAGTTTCGATCAGGCAAACG 59.469 47.619 0.00 0.00 35.55 3.60
625 717 5.957842 ATTAAACAGTTTCGATCAGGCAA 57.042 34.783 0.48 0.00 0.00 4.52
631 723 9.285770 GGGTTGATTAATTAAACAGTTTCGATC 57.714 33.333 9.91 1.81 0.00 3.69
649 741 6.154363 TCAGACAGAAAAACAAAGGGTTGATT 59.846 34.615 0.00 0.00 40.35 2.57
651 743 5.013547 TCAGACAGAAAAACAAAGGGTTGA 58.986 37.500 0.00 0.00 40.35 3.18
653 745 6.544928 AATCAGACAGAAAAACAAAGGGTT 57.455 33.333 0.00 0.00 42.98 4.11
654 746 6.544928 AAATCAGACAGAAAAACAAAGGGT 57.455 33.333 0.00 0.00 0.00 4.34
655 747 6.238184 GCAAAATCAGACAGAAAAACAAAGGG 60.238 38.462 0.00 0.00 0.00 3.95
656 748 6.313411 TGCAAAATCAGACAGAAAAACAAAGG 59.687 34.615 0.00 0.00 0.00 3.11
657 749 7.063780 ACTGCAAAATCAGACAGAAAAACAAAG 59.936 33.333 0.00 0.00 37.51 2.77
659 751 6.310956 CACTGCAAAATCAGACAGAAAAACAA 59.689 34.615 0.00 0.00 37.51 2.83
660 752 5.806502 CACTGCAAAATCAGACAGAAAAACA 59.193 36.000 0.00 0.00 37.51 2.83
661 753 5.276536 GCACTGCAAAATCAGACAGAAAAAC 60.277 40.000 0.00 0.00 37.51 2.43
662 754 4.805192 GCACTGCAAAATCAGACAGAAAAA 59.195 37.500 0.00 0.00 37.51 1.94
663 755 4.098349 AGCACTGCAAAATCAGACAGAAAA 59.902 37.500 3.30 0.00 37.51 2.29
664 756 3.633525 AGCACTGCAAAATCAGACAGAAA 59.366 39.130 3.30 0.00 37.51 2.52
665 757 3.004002 CAGCACTGCAAAATCAGACAGAA 59.996 43.478 3.30 0.00 37.51 3.02
666 758 2.551032 CAGCACTGCAAAATCAGACAGA 59.449 45.455 3.30 0.00 37.51 3.41
667 759 2.551032 TCAGCACTGCAAAATCAGACAG 59.449 45.455 3.30 0.00 37.51 3.51
692 784 3.512516 GCGGTTGGATGCTGGAGC 61.513 66.667 0.00 0.00 42.50 4.70
693 785 2.046023 TGCGGTTGGATGCTGGAG 60.046 61.111 0.00 0.00 0.00 3.86
694 786 2.359850 GTGCGGTTGGATGCTGGA 60.360 61.111 0.00 0.00 0.00 3.86
695 787 3.443045 GGTGCGGTTGGATGCTGG 61.443 66.667 0.00 0.00 0.00 4.85
696 788 3.803082 CGGTGCGGTTGGATGCTG 61.803 66.667 0.00 0.00 0.00 4.41
704 796 4.572571 TTTCCAGGCGGTGCGGTT 62.573 61.111 0.00 0.00 0.00 4.44
707 799 2.458006 GAAAGTTTCCAGGCGGTGCG 62.458 60.000 4.11 0.00 0.00 5.34
708 800 1.285950 GAAAGTTTCCAGGCGGTGC 59.714 57.895 4.11 0.00 0.00 5.01
709 801 1.068333 CATGAAAGTTTCCAGGCGGTG 60.068 52.381 13.01 0.00 0.00 4.94
710 802 1.247567 CATGAAAGTTTCCAGGCGGT 58.752 50.000 13.01 0.00 0.00 5.68
711 803 0.527565 CCATGAAAGTTTCCAGGCGG 59.472 55.000 13.01 2.89 0.00 6.13
712 804 0.527565 CCCATGAAAGTTTCCAGGCG 59.472 55.000 13.01 5.62 0.00 5.52
713 805 1.273327 CACCCATGAAAGTTTCCAGGC 59.727 52.381 13.01 0.00 0.00 4.85
714 806 2.297033 CACACCCATGAAAGTTTCCAGG 59.703 50.000 13.01 13.42 0.00 4.45
715 807 2.297033 CCACACCCATGAAAGTTTCCAG 59.703 50.000 13.01 5.42 0.00 3.86
716 808 2.091610 TCCACACCCATGAAAGTTTCCA 60.092 45.455 13.01 2.08 0.00 3.53
717 809 2.558359 CTCCACACCCATGAAAGTTTCC 59.442 50.000 13.01 0.00 0.00 3.13
718 810 3.004734 CACTCCACACCCATGAAAGTTTC 59.995 47.826 8.75 8.75 0.00 2.78
719 811 2.958355 CACTCCACACCCATGAAAGTTT 59.042 45.455 0.00 0.00 0.00 2.66
947 1045 8.353684 ACGATTACTACTACTGAGATTGGATTG 58.646 37.037 0.00 0.00 0.00 2.67
957 1055 5.829924 CCCCCTTAACGATTACTACTACTGA 59.170 44.000 0.00 0.00 0.00 3.41
1022 1120 1.449246 CTGCGGAGAAGAGCAAGGG 60.449 63.158 0.00 0.00 43.31 3.95
1023 1121 0.177604 ATCTGCGGAGAAGAGCAAGG 59.822 55.000 11.77 0.00 43.31 3.61
1028 1126 3.126000 GTGGAAAAATCTGCGGAGAAGAG 59.874 47.826 11.77 0.00 0.00 2.85
1036 1135 4.685169 ACTACATGTGGAAAAATCTGCG 57.315 40.909 16.98 0.00 0.00 5.18
1053 1152 9.649167 TGCCTAATCTAAGAAAAACACTACTAC 57.351 33.333 0.00 0.00 0.00 2.73
1055 1154 9.740710 AATGCCTAATCTAAGAAAAACACTACT 57.259 29.630 0.00 0.00 0.00 2.57
1056 1155 9.774742 CAATGCCTAATCTAAGAAAAACACTAC 57.225 33.333 0.00 0.00 0.00 2.73
1057 1156 8.458843 GCAATGCCTAATCTAAGAAAAACACTA 58.541 33.333 0.00 0.00 0.00 2.74
1060 1159 7.466746 AGCAATGCCTAATCTAAGAAAAACA 57.533 32.000 0.00 0.00 0.00 2.83
1061 1160 8.763049 AAAGCAATGCCTAATCTAAGAAAAAC 57.237 30.769 0.00 0.00 0.00 2.43
1062 1161 7.754924 CGAAAGCAATGCCTAATCTAAGAAAAA 59.245 33.333 0.00 0.00 0.00 1.94
1063 1162 7.250569 CGAAAGCAATGCCTAATCTAAGAAAA 58.749 34.615 0.00 0.00 0.00 2.29
1064 1163 6.785191 CGAAAGCAATGCCTAATCTAAGAAA 58.215 36.000 0.00 0.00 0.00 2.52
1065 1164 6.363577 CGAAAGCAATGCCTAATCTAAGAA 57.636 37.500 0.00 0.00 0.00 2.52
1066 1165 5.991328 CGAAAGCAATGCCTAATCTAAGA 57.009 39.130 0.00 0.00 0.00 2.10
1088 1187 5.693814 CATTGAAAAGGAGTCTAGTGTTGC 58.306 41.667 0.00 0.00 0.00 4.17
1089 1188 5.239306 TGCATTGAAAAGGAGTCTAGTGTTG 59.761 40.000 0.00 0.00 0.00 3.33
1093 1192 6.479884 AGAATGCATTGAAAAGGAGTCTAGT 58.520 36.000 18.59 0.00 0.00 2.57
1094 1193 6.998968 AGAATGCATTGAAAAGGAGTCTAG 57.001 37.500 18.59 0.00 0.00 2.43
1112 1211 7.201376 CCAAATTCGATTTGTGCACTAAGAATG 60.201 37.037 20.72 14.36 46.22 2.67
1113 1212 6.808212 CCAAATTCGATTTGTGCACTAAGAAT 59.192 34.615 19.41 17.86 46.22 2.40
1114 1213 6.148948 CCAAATTCGATTTGTGCACTAAGAA 58.851 36.000 19.41 16.49 46.22 2.52
1116 1215 4.324402 GCCAAATTCGATTTGTGCACTAAG 59.676 41.667 19.41 6.18 46.22 2.18
1117 1216 4.233789 GCCAAATTCGATTTGTGCACTAA 58.766 39.130 19.41 17.57 46.22 2.24
1125 1224 2.739885 TGGTGGCCAAATTCGATTTG 57.260 45.000 7.24 11.19 46.98 2.32
1164 1263 4.810491 GTGTTTGGCATGACAAAATCAAGT 59.190 37.500 27.95 0.00 41.93 3.16
1191 1290 5.488341 ACAACCATAAGCAACCAGTAGTAG 58.512 41.667 0.00 0.00 0.00 2.57
1192 1291 5.492855 ACAACCATAAGCAACCAGTAGTA 57.507 39.130 0.00 0.00 0.00 1.82
1193 1292 4.367039 ACAACCATAAGCAACCAGTAGT 57.633 40.909 0.00 0.00 0.00 2.73
1194 1293 4.082787 CCAACAACCATAAGCAACCAGTAG 60.083 45.833 0.00 0.00 0.00 2.57
1195 1294 3.823873 CCAACAACCATAAGCAACCAGTA 59.176 43.478 0.00 0.00 0.00 2.74
1196 1295 2.627699 CCAACAACCATAAGCAACCAGT 59.372 45.455 0.00 0.00 0.00 4.00
1197 1296 2.029110 CCCAACAACCATAAGCAACCAG 60.029 50.000 0.00 0.00 0.00 4.00
1198 1297 1.967066 CCCAACAACCATAAGCAACCA 59.033 47.619 0.00 0.00 0.00 3.67
1199 1298 2.231235 CTCCCAACAACCATAAGCAACC 59.769 50.000 0.00 0.00 0.00 3.77
1457 1557 3.428999 GGACACACTCTTCGCAGCTAATA 60.429 47.826 0.00 0.00 0.00 0.98
1458 1558 2.611518 GACACACTCTTCGCAGCTAAT 58.388 47.619 0.00 0.00 0.00 1.73
1550 1665 1.541147 CTTCCACGTGATGCCATTTGT 59.459 47.619 19.30 0.00 0.00 2.83
1594 1709 1.603456 TGCACGGAATCACAACACAT 58.397 45.000 0.00 0.00 0.00 3.21
1732 1865 2.991190 GACAAGAGCGACGTTAAATGGA 59.009 45.455 0.00 0.00 0.00 3.41
1948 2085 7.767261 TGTTGTTTATGATGGTATTAGTTGGC 58.233 34.615 0.00 0.00 0.00 4.52
2051 2196 5.737860 TCTAGCTGTGATTTGACATGATGT 58.262 37.500 0.00 0.00 0.00 3.06
2097 2242 6.042093 AGGCAGCTGCAGATTAAACTATAGTA 59.958 38.462 37.63 0.00 44.36 1.82
2098 2243 5.059833 GGCAGCTGCAGATTAAACTATAGT 58.940 41.667 37.63 0.00 44.36 2.12
2099 2244 5.178996 CAGGCAGCTGCAGATTAAACTATAG 59.821 44.000 37.63 9.45 44.36 1.31
2182 2327 3.181474 GGTATGTAGCTCCAGAGTGAACC 60.181 52.174 0.00 0.00 0.00 3.62
2244 2391 4.138290 TCGCTGATTTTCCCAACAACTTA 58.862 39.130 0.00 0.00 0.00 2.24
2944 3098 3.011257 ACCCACCACCAATAACAATAGCT 59.989 43.478 0.00 0.00 0.00 3.32
3439 3595 4.527944 AGTTGTACCTCTCGAGATCATGA 58.472 43.478 17.03 0.00 0.00 3.07
3526 3682 9.013229 TCATAAAGTGCATAACTGAAAGACAAT 57.987 29.630 0.00 0.00 39.81 2.71
3562 3718 4.141390 ACAAACTCTTGTGGGACTTGAGAT 60.141 41.667 0.00 0.00 44.28 2.75
3617 3773 7.455008 ACTGAGAGAAGTAATTACCTCTTCCAA 59.545 37.037 19.33 9.61 38.50 3.53
3632 3788 2.703007 AGCACCAAGAACTGAGAGAAGT 59.297 45.455 0.00 0.00 0.00 3.01
3663 3819 5.569355 TCAAGACCCAAGAAATATCAGCAA 58.431 37.500 0.00 0.00 0.00 3.91
3670 3826 7.451731 ACAGGATATCAAGACCCAAGAAATA 57.548 36.000 4.83 0.00 0.00 1.40
3682 3838 8.777413 CACATACCAATGTTACAGGATATCAAG 58.223 37.037 4.83 0.00 44.07 3.02
3702 3858 1.522668 TTGCCAGTCTGTGCACATAC 58.477 50.000 23.71 23.71 37.18 2.39
3785 3941 1.464997 GCGAACCTCAAGTGTGGATTC 59.535 52.381 6.41 5.80 33.21 2.52
3805 3961 0.813184 GCACACAGGGATTGATGGTG 59.187 55.000 0.00 0.00 35.66 4.17
4120 4278 7.763985 CCTTTTGCCAAAGTATTTATAACTGGG 59.236 37.037 9.24 0.00 35.03 4.45
4224 4382 6.166982 AGAGCTTGGATCAGTACTAACAAAC 58.833 40.000 0.00 0.00 0.00 2.93
4312 4470 2.801679 AGCATCCGCAACAAATGTTTTG 59.198 40.909 0.00 0.00 42.27 2.44
4345 4503 3.955524 TTAAGAACACCCAAGGGAACA 57.044 42.857 13.15 0.00 38.96 3.18
4390 4548 2.203938 TTCCACTCCGGGAGCCTT 60.204 61.111 23.84 1.49 38.42 4.35
4633 4791 2.468831 TGTGAAAACGCAAATTGAGCC 58.531 42.857 0.00 0.00 0.00 4.70
4645 4803 6.293680 GGAGGATCTTCTTCAACTGTGAAAAC 60.294 42.308 4.68 0.00 38.16 2.43
4651 4809 3.525862 AGGGAGGATCTTCTTCAACTGT 58.474 45.455 4.68 0.00 33.73 3.55
4725 4883 4.504858 AGTTAGAACTGGAAGCGGTATTG 58.495 43.478 0.00 0.00 37.98 1.90
4731 4889 5.352284 ACATGATAGTTAGAACTGGAAGCG 58.648 41.667 0.00 0.00 40.07 4.68
4890 5048 0.837272 CCTCCCCCGCAAAGAATAGA 59.163 55.000 0.00 0.00 0.00 1.98
4920 5078 3.228759 ACCGTGCCCGTGTACTGT 61.229 61.111 0.00 0.00 0.00 3.55
5016 5174 3.786656 GTGGCACATCTCCAGCATA 57.213 52.632 13.86 0.00 44.52 3.14
5098 5256 6.154706 ACAATAGATAGATAGTTTAGGGGCGG 59.845 42.308 0.00 0.00 0.00 6.13
5164 5322 3.710722 CTCCCACGCTGCCTTCCT 61.711 66.667 0.00 0.00 0.00 3.36
5272 5431 0.607112 TACATACCGACGCCCACAAA 59.393 50.000 0.00 0.00 0.00 2.83
5314 5474 2.230660 AGCTCCTTACCAAGCACAAAC 58.769 47.619 0.00 0.00 41.06 2.93
5321 5481 0.179081 GGCCGTAGCTCCTTACCAAG 60.179 60.000 0.00 0.00 39.73 3.61
5344 5511 2.642311 TCTGCCCTACAAAGATGGTCAA 59.358 45.455 0.00 0.00 0.00 3.18
5482 5663 4.215399 TCTGGAATCACAAATGGTTTCGAC 59.785 41.667 0.00 0.00 24.79 4.20
5485 5666 4.082026 CCCTCTGGAATCACAAATGGTTTC 60.082 45.833 0.00 0.00 0.00 2.78
5502 5683 1.435515 GTGCTCTCTACGCCCTCTG 59.564 63.158 0.00 0.00 0.00 3.35
5585 5766 1.532604 ATCGTCCGCTGACAAGTCCA 61.533 55.000 9.06 0.00 41.85 4.02
5602 5783 0.035439 TGGTCGGCTCCCTGAAAATC 60.035 55.000 0.00 0.00 0.00 2.17
5609 5867 1.694169 ATTGGATGGTCGGCTCCCT 60.694 57.895 0.00 0.00 0.00 4.20
5658 6420 1.109920 ACGCGACTATGGATGAGGCT 61.110 55.000 15.93 0.00 0.00 4.58
5671 6433 4.176851 GGACGAGGAGGACGCGAC 62.177 72.222 15.93 6.56 45.76 5.19
5689 6451 0.333312 TCTTCGGAGGAGGAGAGCTT 59.667 55.000 0.00 0.00 0.00 3.74
5716 7880 0.456221 CACATTACGTCGGGAGAGCT 59.544 55.000 0.00 0.00 41.26 4.09
5774 7938 1.505807 CGATGCCGCCACAAAATCA 59.494 52.632 0.00 0.00 0.00 2.57
5794 7958 3.706373 GTGGAAGGCCCTCTCGCA 61.706 66.667 0.00 0.00 35.38 5.10
5840 8004 2.304221 TCTTCCTTCTTCGACCTCCA 57.696 50.000 0.00 0.00 0.00 3.86
5848 8012 2.270858 ACCCTCCCTTCTTCCTTCTTC 58.729 52.381 0.00 0.00 0.00 2.87
5878 8042 2.760385 CCCCGACTCCCTCTGTCC 60.760 72.222 0.00 0.00 0.00 4.02
5881 8045 3.151022 GAGCCCCGACTCCCTCTG 61.151 72.222 0.00 0.00 0.00 3.35
5882 8046 4.824515 CGAGCCCCGACTCCCTCT 62.825 72.222 0.00 0.00 41.76 3.69
5893 8057 2.682494 TACACCACCTCCGAGCCC 60.682 66.667 0.00 0.00 0.00 5.19
5909 8073 2.666862 CGGCCACGGCACAAACTA 60.667 61.111 10.83 0.00 44.11 2.24
5911 8075 4.322385 GTCGGCCACGGCACAAAC 62.322 66.667 10.83 0.00 45.76 2.93
5920 8084 1.369625 ATTTGAAGATCGTCGGCCAC 58.630 50.000 2.24 0.00 0.00 5.01
5928 8092 4.058817 GGGGTGCTACTATTTGAAGATCG 58.941 47.826 0.00 0.00 0.00 3.69
5930 8094 4.439253 GGGGGTGCTACTATTTGAAGAT 57.561 45.455 0.00 0.00 0.00 2.40
5966 8130 0.591170 CCGAACACATTCAAGCCGTT 59.409 50.000 0.00 0.00 34.14 4.44
5970 8134 0.179215 CTCGCCGAACACATTCAAGC 60.179 55.000 0.00 0.00 34.14 4.01
5971 8135 1.428448 TCTCGCCGAACACATTCAAG 58.572 50.000 0.00 0.00 34.14 3.02
5972 8136 2.093306 ATCTCGCCGAACACATTCAA 57.907 45.000 0.00 0.00 34.14 2.69
5973 8137 1.731709 CAATCTCGCCGAACACATTCA 59.268 47.619 0.00 0.00 34.14 2.57
5974 8138 1.062587 CCAATCTCGCCGAACACATTC 59.937 52.381 0.00 0.00 0.00 2.67
5975 8139 1.086696 CCAATCTCGCCGAACACATT 58.913 50.000 0.00 0.00 0.00 2.71
5976 8140 1.369091 GCCAATCTCGCCGAACACAT 61.369 55.000 0.00 0.00 0.00 3.21
5977 8141 2.032634 GCCAATCTCGCCGAACACA 61.033 57.895 0.00 0.00 0.00 3.72
5978 8142 1.298859 AAGCCAATCTCGCCGAACAC 61.299 55.000 0.00 0.00 0.00 3.32
5979 8143 1.003839 AAGCCAATCTCGCCGAACA 60.004 52.632 0.00 0.00 0.00 3.18
5980 8144 0.741221 AGAAGCCAATCTCGCCGAAC 60.741 55.000 0.00 0.00 0.00 3.95
5981 8145 0.460284 GAGAAGCCAATCTCGCCGAA 60.460 55.000 0.00 0.00 36.77 4.30
5982 8146 1.141881 GAGAAGCCAATCTCGCCGA 59.858 57.895 0.00 0.00 36.77 5.54
5983 8147 3.711348 GAGAAGCCAATCTCGCCG 58.289 61.111 0.00 0.00 36.77 6.46
5987 8151 0.647925 GCGAACGAGAAGCCAATCTC 59.352 55.000 0.00 2.49 41.99 2.75
5988 8152 2.755929 GCGAACGAGAAGCCAATCT 58.244 52.632 0.00 0.00 0.00 2.40
6007 8171 4.191485 GACATTCACGTCGGCGCG 62.191 66.667 10.50 19.04 42.83 6.86
6013 8177 2.100631 CCTGCCCGACATTCACGTC 61.101 63.158 0.00 0.00 0.00 4.34
6014 8178 2.047274 CCTGCCCGACATTCACGT 60.047 61.111 0.00 0.00 0.00 4.49
6015 8179 3.499737 GCCTGCCCGACATTCACG 61.500 66.667 0.00 0.00 0.00 4.35
6016 8180 3.499737 CGCCTGCCCGACATTCAC 61.500 66.667 0.00 0.00 0.00 3.18
6017 8181 4.776322 CCGCCTGCCCGACATTCA 62.776 66.667 0.00 0.00 0.00 2.57
6018 8182 4.467084 TCCGCCTGCCCGACATTC 62.467 66.667 0.00 0.00 0.00 2.67
6019 8183 4.778143 GTCCGCCTGCCCGACATT 62.778 66.667 0.00 0.00 0.00 2.71
6038 8202 2.925162 ATTCAAGCGGGCTAGCCGTC 62.925 60.000 27.24 20.07 38.01 4.79
6039 8203 3.031417 ATTCAAGCGGGCTAGCCGT 62.031 57.895 27.24 11.82 38.01 5.68
6040 8204 2.203070 ATTCAAGCGGGCTAGCCG 60.203 61.111 27.24 21.96 38.01 5.52
6041 8205 2.838974 GCATTCAAGCGGGCTAGCC 61.839 63.158 26.55 26.55 38.01 3.93
6042 8206 2.718107 GCATTCAAGCGGGCTAGC 59.282 61.111 6.04 6.04 37.41 3.42
6050 8214 1.265365 GGCTTCCTATCGCATTCAAGC 59.735 52.381 0.00 0.00 36.36 4.01
6051 8215 1.528586 CGGCTTCCTATCGCATTCAAG 59.471 52.381 0.00 0.00 0.00 3.02
6052 8216 1.134521 ACGGCTTCCTATCGCATTCAA 60.135 47.619 0.00 0.00 0.00 2.69
6053 8217 0.464036 ACGGCTTCCTATCGCATTCA 59.536 50.000 0.00 0.00 0.00 2.57
6054 8218 1.140816 GACGGCTTCCTATCGCATTC 58.859 55.000 0.00 0.00 0.00 2.67
6055 8219 0.249911 GGACGGCTTCCTATCGCATT 60.250 55.000 2.18 0.00 41.95 3.56
6056 8220 1.367840 GGACGGCTTCCTATCGCAT 59.632 57.895 2.18 0.00 41.95 4.73
6057 8221 2.792947 GGGACGGCTTCCTATCGCA 61.793 63.158 10.13 0.00 45.09 5.10
6058 8222 2.029221 GGGACGGCTTCCTATCGC 59.971 66.667 10.13 0.00 45.09 4.58
6071 8235 2.711922 ATGACTGAGGCGACGGGAC 61.712 63.158 0.00 0.00 0.00 4.46
6072 8236 2.362503 ATGACTGAGGCGACGGGA 60.363 61.111 0.00 0.00 0.00 5.14
6073 8237 2.202797 CATGACTGAGGCGACGGG 60.203 66.667 0.00 0.00 0.00 5.28
6074 8238 2.573869 ACATGACTGAGGCGACGG 59.426 61.111 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.