Multiple sequence alignment - TraesCS2D01G467200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467200 chr2D 100.000 2324 0 0 1 2324 572358678 572356355 0.000000e+00 4292.0
1 TraesCS2D01G467200 chr2D 95.129 349 15 2 1977 2324 322501568 322501221 1.210000e-152 549.0
2 TraesCS2D01G467200 chr2A 89.474 855 45 22 568 1388 711552835 711551992 0.000000e+00 1038.0
3 TraesCS2D01G467200 chr2A 90.810 457 26 5 77 518 711553299 711552844 4.270000e-167 597.0
4 TraesCS2D01G467200 chr2A 94.842 349 17 1 1977 2324 41001612 41001264 5.650000e-151 544.0
5 TraesCS2D01G467200 chr2A 86.364 154 17 4 1815 1965 113816636 113816484 5.140000e-37 165.0
6 TraesCS2D01G467200 chr2A 95.238 84 4 0 1 84 711553457 711553374 1.450000e-27 134.0
7 TraesCS2D01G467200 chr2B 87.611 791 56 20 575 1343 687334643 687333873 0.000000e+00 880.0
8 TraesCS2D01G467200 chr2B 94.231 520 28 2 1 518 687335172 687334653 0.000000e+00 793.0
9 TraesCS2D01G467200 chr2B 92.775 346 14 3 1480 1815 687333729 687333385 7.460000e-135 490.0
10 TraesCS2D01G467200 chr2B 84.091 132 9 6 1381 1502 687333873 687333744 1.460000e-22 117.0
11 TraesCS2D01G467200 chr7D 95.429 350 14 2 1976 2324 594142024 594141676 7.250000e-155 556.0
12 TraesCS2D01G467200 chr3D 95.415 349 14 2 1977 2324 547932408 547932061 2.610000e-154 555.0
13 TraesCS2D01G467200 chr3D 94.842 349 16 2 1977 2324 402494895 402495242 5.650000e-151 544.0
14 TraesCS2D01G467200 chr7B 94.842 349 16 2 1977 2324 87822911 87822564 5.650000e-151 544.0
15 TraesCS2D01G467200 chr5D 94.842 349 16 2 1977 2324 486002637 486002290 5.650000e-151 544.0
16 TraesCS2D01G467200 chr5D 94.842 349 15 3 1977 2324 525595031 525594685 2.030000e-150 542.0
17 TraesCS2D01G467200 chr1D 94.842 349 16 2 1977 2324 236080133 236079786 5.650000e-151 544.0
18 TraesCS2D01G467200 chr1D 91.852 135 10 1 1810 1943 257424604 257424738 1.100000e-43 187.0
19 TraesCS2D01G467200 chr1D 92.913 127 9 0 1817 1943 483150862 483150988 3.940000e-43 185.0
20 TraesCS2D01G467200 chr1D 91.473 129 11 0 1815 1943 434619626 434619498 6.600000e-41 178.0
21 TraesCS2D01G467200 chr7A 93.023 129 9 0 1815 1943 4985489 4985361 3.050000e-44 189.0
22 TraesCS2D01G467200 chr4B 93.496 123 8 0 1815 1937 621843626 621843748 1.420000e-42 183.0
23 TraesCS2D01G467200 chr4D 92.126 127 10 0 1817 1943 73211935 73211809 1.830000e-41 180.0
24 TraesCS2D01G467200 chr1A 91.538 130 11 0 1814 1943 232089043 232089172 1.830000e-41 180.0
25 TraesCS2D01G467200 chr5B 91.406 128 11 0 1816 1943 448291547 448291674 2.370000e-40 176.0
26 TraesCS2D01G467200 chr3A 97.436 39 0 1 1936 1973 28385739 28385777 5.360000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467200 chr2D 572356355 572358678 2323 True 4292.000000 4292 100.000000 1 2324 1 chr2D.!!$R2 2323
1 TraesCS2D01G467200 chr2A 711551992 711553457 1465 True 589.666667 1038 91.840667 1 1388 3 chr2A.!!$R3 1387
2 TraesCS2D01G467200 chr2B 687333385 687335172 1787 True 570.000000 880 89.677000 1 1815 4 chr2B.!!$R1 1814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 1012 0.036022 CCTCCCATAAGCTAGCAGCC 59.964 60.0 18.83 0.0 43.77 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2304 0.027716 CGACGACGAGTGGTCTATGG 59.972 60.0 14.6 0.0 43.79 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.386661 AACGGCAACAGACTATCAGG 57.613 50.000 0.00 0.00 0.00 3.86
56 57 6.205464 TCAGCTTACTGTTTTCTGAATCTTGG 59.795 38.462 0.00 0.00 44.77 3.61
60 61 5.924475 ACTGTTTTCTGAATCTTGGTACG 57.076 39.130 0.00 0.00 0.00 3.67
104 189 1.425066 TCTGCACCTCAAAATGTCCCT 59.575 47.619 0.00 0.00 0.00 4.20
151 244 0.652592 CTCCGATTTCGACACATGGC 59.347 55.000 0.67 0.00 43.02 4.40
251 344 0.460635 TAACCCATACGTTGCTCGCC 60.461 55.000 0.00 0.00 44.19 5.54
330 428 1.404717 CCAAGACGAGACAGGACATGG 60.405 57.143 0.00 0.00 0.00 3.66
332 430 0.972983 AGACGAGACAGGACATGGGG 60.973 60.000 0.00 0.00 0.00 4.96
374 472 2.123077 CTCCTCCGAGGGGATGCT 60.123 66.667 8.90 0.00 38.47 3.79
385 483 1.048601 GGGGATGCTACCTTGATCGA 58.951 55.000 0.00 0.00 0.00 3.59
421 519 2.206576 AGCAGAAGGGTCCATGAAAC 57.793 50.000 0.00 0.00 0.00 2.78
442 540 8.141268 TGAAACAAACCCAAAGAGAAATGATAC 58.859 33.333 0.00 0.00 0.00 2.24
448 546 4.430007 CCAAAGAGAAATGATACCGTCGA 58.570 43.478 0.00 0.00 0.00 4.20
518 618 5.441718 AATTAGCCAATGTTCCTCTGAGA 57.558 39.130 6.17 0.00 0.00 3.27
519 619 2.777832 AGCCAATGTTCCTCTGAGAC 57.222 50.000 6.17 0.00 0.00 3.36
520 620 2.264455 AGCCAATGTTCCTCTGAGACT 58.736 47.619 6.17 0.00 0.00 3.24
521 621 2.641815 AGCCAATGTTCCTCTGAGACTT 59.358 45.455 6.17 0.00 0.00 3.01
522 622 3.840666 AGCCAATGTTCCTCTGAGACTTA 59.159 43.478 6.17 0.00 0.00 2.24
523 623 4.081198 AGCCAATGTTCCTCTGAGACTTAG 60.081 45.833 6.17 0.00 0.00 2.18
527 627 7.633772 GCCAATGTTCCTCTGAGACTTAGATTA 60.634 40.741 6.17 0.00 0.00 1.75
528 628 8.260818 CCAATGTTCCTCTGAGACTTAGATTAA 58.739 37.037 6.17 0.00 0.00 1.40
533 633 9.752961 GTTCCTCTGAGACTTAGATTAAATACC 57.247 37.037 6.17 0.00 0.00 2.73
534 634 8.480133 TCCTCTGAGACTTAGATTAAATACCC 57.520 38.462 6.17 0.00 0.00 3.69
535 635 8.065627 TCCTCTGAGACTTAGATTAAATACCCA 58.934 37.037 6.17 0.00 0.00 4.51
536 636 8.705594 CCTCTGAGACTTAGATTAAATACCCAA 58.294 37.037 6.17 0.00 0.00 4.12
537 637 9.757227 CTCTGAGACTTAGATTAAATACCCAAG 57.243 37.037 0.00 0.00 0.00 3.61
538 638 8.204836 TCTGAGACTTAGATTAAATACCCAAGC 58.795 37.037 0.00 0.00 0.00 4.01
539 639 7.857456 TGAGACTTAGATTAAATACCCAAGCA 58.143 34.615 0.00 0.00 0.00 3.91
540 640 7.987458 TGAGACTTAGATTAAATACCCAAGCAG 59.013 37.037 0.00 0.00 0.00 4.24
541 641 6.768381 AGACTTAGATTAAATACCCAAGCAGC 59.232 38.462 0.00 0.00 0.00 5.25
542 642 6.663734 ACTTAGATTAAATACCCAAGCAGCT 58.336 36.000 0.00 0.00 0.00 4.24
543 643 7.119387 ACTTAGATTAAATACCCAAGCAGCTT 58.881 34.615 0.21 0.21 0.00 3.74
544 644 7.615757 ACTTAGATTAAATACCCAAGCAGCTTT 59.384 33.333 4.38 0.00 0.00 3.51
545 645 6.857437 AGATTAAATACCCAAGCAGCTTTT 57.143 33.333 4.38 0.00 0.00 2.27
546 646 6.867550 AGATTAAATACCCAAGCAGCTTTTC 58.132 36.000 4.38 0.00 0.00 2.29
547 647 6.665248 AGATTAAATACCCAAGCAGCTTTTCT 59.335 34.615 4.38 0.00 0.00 2.52
548 648 4.525912 AAATACCCAAGCAGCTTTTCTG 57.474 40.909 4.38 0.00 45.62 3.02
549 649 2.949177 TACCCAAGCAGCTTTTCTGA 57.051 45.000 4.38 0.00 45.72 3.27
550 650 2.071778 ACCCAAGCAGCTTTTCTGAA 57.928 45.000 4.38 0.00 45.72 3.02
551 651 1.959282 ACCCAAGCAGCTTTTCTGAAG 59.041 47.619 4.38 0.00 45.72 3.02
552 652 1.336609 CCCAAGCAGCTTTTCTGAAGC 60.337 52.381 4.38 2.67 45.72 3.86
553 653 1.336609 CCAAGCAGCTTTTCTGAAGCC 60.337 52.381 4.38 0.00 45.72 4.35
554 654 1.338973 CAAGCAGCTTTTCTGAAGCCA 59.661 47.619 4.38 0.00 45.72 4.75
555 655 1.696063 AGCAGCTTTTCTGAAGCCAA 58.304 45.000 7.11 0.00 45.72 4.52
556 656 2.245582 AGCAGCTTTTCTGAAGCCAAT 58.754 42.857 7.11 0.00 45.72 3.16
557 657 3.424703 AGCAGCTTTTCTGAAGCCAATA 58.575 40.909 7.11 0.00 45.72 1.90
558 658 3.192212 AGCAGCTTTTCTGAAGCCAATAC 59.808 43.478 7.11 0.00 45.72 1.89
559 659 3.057315 GCAGCTTTTCTGAAGCCAATACA 60.057 43.478 7.11 0.00 45.72 2.29
560 660 4.479619 CAGCTTTTCTGAAGCCAATACAC 58.520 43.478 7.11 0.00 45.72 2.90
561 661 4.022935 CAGCTTTTCTGAAGCCAATACACA 60.023 41.667 7.11 0.00 45.72 3.72
562 662 4.217118 AGCTTTTCTGAAGCCAATACACAG 59.783 41.667 7.11 0.00 44.01 3.66
563 663 4.479619 CTTTTCTGAAGCCAATACACAGC 58.520 43.478 0.00 0.00 0.00 4.40
564 664 3.423539 TTCTGAAGCCAATACACAGCT 57.576 42.857 0.00 0.00 38.88 4.24
565 665 4.551702 TTCTGAAGCCAATACACAGCTA 57.448 40.909 0.00 0.00 35.30 3.32
566 666 3.861840 TCTGAAGCCAATACACAGCTAC 58.138 45.455 0.00 0.00 35.30 3.58
567 667 3.515502 TCTGAAGCCAATACACAGCTACT 59.484 43.478 0.00 0.00 35.30 2.57
568 668 4.020218 TCTGAAGCCAATACACAGCTACTT 60.020 41.667 0.00 0.00 35.30 2.24
569 669 4.651778 TGAAGCCAATACACAGCTACTTT 58.348 39.130 0.00 0.00 35.30 2.66
570 670 5.070001 TGAAGCCAATACACAGCTACTTTT 58.930 37.500 0.00 0.00 35.30 2.27
571 671 5.534654 TGAAGCCAATACACAGCTACTTTTT 59.465 36.000 0.00 0.00 35.30 1.94
605 705 0.972134 TTTCGGCCAATTGCATCCAA 59.028 45.000 2.24 0.00 43.89 3.53
608 708 0.176219 CGGCCAATTGCATCCAACAT 59.824 50.000 2.24 0.00 43.89 2.71
617 717 1.275856 TGCATCCAACATTTTCAGGCC 59.724 47.619 0.00 0.00 0.00 5.19
625 725 1.068434 ACATTTTCAGGCCGGTTTGTG 59.932 47.619 1.90 0.00 0.00 3.33
644 751 2.289002 GTGTTCTGAGCACTGGAAAGTG 59.711 50.000 16.15 1.45 42.32 3.16
651 758 0.447801 GCACTGGAAAGTGGCGTATG 59.552 55.000 7.89 0.00 39.97 2.39
714 823 3.309388 CGCGATGGGAGACTAATAACAG 58.691 50.000 0.00 0.00 0.00 3.16
718 827 4.202161 CGATGGGAGACTAATAACAGCACT 60.202 45.833 0.00 0.00 0.00 4.40
720 829 4.093743 TGGGAGACTAATAACAGCACTGA 58.906 43.478 4.31 0.00 0.00 3.41
734 844 3.055963 CAGCACTGATTCTCTGGTCTCTT 60.056 47.826 0.00 0.00 0.00 2.85
735 845 3.195396 AGCACTGATTCTCTGGTCTCTTC 59.805 47.826 0.00 0.00 0.00 2.87
741 858 2.411628 TCTCTGGTCTCTTCCTCTCG 57.588 55.000 0.00 0.00 0.00 4.04
742 859 1.909986 TCTCTGGTCTCTTCCTCTCGA 59.090 52.381 0.00 0.00 0.00 4.04
815 948 5.466728 CAGTTTAGTGGACCATATTGATCCG 59.533 44.000 0.00 0.00 30.45 4.18
821 954 4.692625 GTGGACCATATTGATCCGAATGAG 59.307 45.833 0.00 0.00 30.45 2.90
857 990 2.994186 ATACACGCCCCGAAATTACT 57.006 45.000 0.00 0.00 0.00 2.24
877 1010 2.036992 CTGACCTCCCATAAGCTAGCAG 59.963 54.545 18.83 3.06 0.00 4.24
878 1011 0.761802 ACCTCCCATAAGCTAGCAGC 59.238 55.000 18.83 0.00 42.84 5.25
879 1012 0.036022 CCTCCCATAAGCTAGCAGCC 59.964 60.000 18.83 0.00 43.77 4.85
880 1013 1.055040 CTCCCATAAGCTAGCAGCCT 58.945 55.000 18.83 0.48 43.77 4.58
881 1014 2.251818 CTCCCATAAGCTAGCAGCCTA 58.748 52.381 18.83 2.93 43.77 3.93
882 1015 2.233431 CTCCCATAAGCTAGCAGCCTAG 59.767 54.545 18.83 1.31 43.77 3.02
894 1027 2.503356 AGCAGCCTAGCACAATAGAACT 59.497 45.455 0.00 0.00 36.85 3.01
903 1036 2.749076 GCACAATAGAACTCACATGCCA 59.251 45.455 0.00 0.00 0.00 4.92
904 1037 3.181503 GCACAATAGAACTCACATGCCAG 60.182 47.826 0.00 0.00 0.00 4.85
929 1062 2.356665 TTTTAGCCTGCTGTGTGGAA 57.643 45.000 0.97 0.00 0.00 3.53
973 1115 2.860136 GCAACTTGCAGGTTTTGAGAAC 59.140 45.455 12.08 0.00 44.26 3.01
1011 1153 2.036098 CTGGTCATGGCCAAGGCA 59.964 61.111 21.71 1.49 44.11 4.75
1032 1174 3.823330 GTCGTCGCCCGGATCACT 61.823 66.667 0.73 0.00 37.11 3.41
1104 1246 3.693245 GTGCTGGACACGATAGCG 58.307 61.111 0.00 0.00 40.07 4.26
1128 1270 4.821589 GAGAAGGAGGCGGCCGTG 62.822 72.222 28.70 0.00 0.00 4.94
1163 1305 1.172180 CCTCACCACCGCAACAATGT 61.172 55.000 0.00 0.00 0.00 2.71
1330 1472 0.111089 GATCGCCGCGTGATTGATTC 60.111 55.000 13.39 0.00 32.57 2.52
1338 1480 1.762222 CGTGATTGATTCCCGTCGGC 61.762 60.000 5.50 0.00 0.00 5.54
1359 1501 3.370209 GCGGGGAACTGGACTTAATTAGT 60.370 47.826 0.00 0.00 37.15 2.24
1378 1520 8.999220 AATTAGTCTTGTTACTAGCTTGGTAC 57.001 34.615 0.00 0.00 33.62 3.34
1379 1521 7.528996 TTAGTCTTGTTACTAGCTTGGTACA 57.471 36.000 0.00 0.00 33.62 2.90
1388 1530 7.123697 TGTTACTAGCTTGGTACAGTGTATGAT 59.876 37.037 6.21 0.00 42.39 2.45
1393 1535 3.260475 TGGTACAGTGTATGATGGTGC 57.740 47.619 6.21 0.00 0.00 5.01
1397 1539 3.423539 ACAGTGTATGATGGTGCTGTT 57.576 42.857 0.00 0.00 34.02 3.16
1398 1540 3.338249 ACAGTGTATGATGGTGCTGTTC 58.662 45.455 0.00 0.00 34.02 3.18
1442 1584 1.657751 GGAATGGGCGAACTGCTTCC 61.658 60.000 0.00 0.00 45.43 3.46
1443 1585 0.678048 GAATGGGCGAACTGCTTCCT 60.678 55.000 0.00 0.00 45.43 3.36
1444 1586 0.618458 AATGGGCGAACTGCTTCCTA 59.382 50.000 0.00 0.00 45.43 2.94
1459 1610 3.827625 CTTCCTAATCATCTAGCGTCGG 58.172 50.000 0.00 0.00 0.00 4.79
1483 1634 6.261158 GGGTTCTCTTTCTATTTCCTGTATGC 59.739 42.308 0.00 0.00 0.00 3.14
1484 1635 6.018669 GGTTCTCTTTCTATTTCCTGTATGCG 60.019 42.308 0.00 0.00 0.00 4.73
1485 1636 6.222038 TCTCTTTCTATTTCCTGTATGCGT 57.778 37.500 0.00 0.00 0.00 5.24
1487 1638 7.426410 TCTCTTTCTATTTCCTGTATGCGTAG 58.574 38.462 0.00 0.00 0.00 3.51
1513 1700 1.066858 CGGCAGTCTGGACATGTAACT 60.067 52.381 0.00 0.00 0.00 2.24
1516 1703 3.516615 GCAGTCTGGACATGTAACTCTC 58.483 50.000 0.00 0.00 0.00 3.20
1611 1807 3.958798 AGCCAGAGGTACGTGTTGTATAT 59.041 43.478 0.00 0.00 35.02 0.86
1647 1843 3.192541 TGCTAAACTGCAGTTGACTGA 57.807 42.857 31.73 12.86 46.59 3.41
1670 1867 8.600449 TGATTTTTCTTTCTCTCTTCTCAGTC 57.400 34.615 0.00 0.00 0.00 3.51
1741 1938 1.256376 CGTGATTATGCGAGCTGTGTC 59.744 52.381 0.00 0.00 0.00 3.67
1808 2005 0.609406 TCGGCCTATGAGGATCTCGG 60.609 60.000 0.00 0.00 37.67 4.63
1831 2028 4.561735 TTTTTAAGAGCAACTCCAACGG 57.438 40.909 0.00 0.00 0.00 4.44
1832 2029 2.178912 TTAAGAGCAACTCCAACGGG 57.821 50.000 0.00 0.00 0.00 5.28
1833 2030 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
1834 2031 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
1837 2034 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
1838 2035 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
1848 2045 3.719144 GGCCGACCCAAACGAACG 61.719 66.667 0.00 0.00 0.00 3.95
1849 2046 3.719144 GCCGACCCAAACGAACGG 61.719 66.667 0.00 0.00 45.26 4.44
1850 2047 3.719144 CCGACCCAAACGAACGGC 61.719 66.667 0.00 0.00 37.32 5.68
1852 2049 4.379143 GACCCAAACGAACGGCGC 62.379 66.667 6.90 0.00 46.04 6.53
1854 2051 3.732892 CCCAAACGAACGGCGCAT 61.733 61.111 10.83 0.00 46.04 4.73
1855 2052 2.254051 CCAAACGAACGGCGCATT 59.746 55.556 10.83 1.87 46.04 3.56
1856 2053 1.371145 CCAAACGAACGGCGCATTT 60.371 52.632 10.83 0.00 46.04 2.32
1857 2054 1.604612 CCAAACGAACGGCGCATTTG 61.605 55.000 10.83 12.30 46.04 2.32
1858 2055 0.932585 CAAACGAACGGCGCATTTGT 60.933 50.000 10.83 10.32 46.04 2.83
1859 2056 0.659123 AAACGAACGGCGCATTTGTC 60.659 50.000 10.83 0.00 46.04 3.18
1860 2057 2.202298 CGAACGGCGCATTTGTCC 60.202 61.111 10.83 0.00 0.00 4.02
1864 2061 2.254051 CGGCGCATTTGTCCGTTT 59.746 55.556 10.83 0.00 38.47 3.60
1865 2062 1.371145 CGGCGCATTTGTCCGTTTT 60.371 52.632 10.83 0.00 38.47 2.43
1866 2063 0.937231 CGGCGCATTTGTCCGTTTTT 60.937 50.000 10.83 0.00 38.47 1.94
1883 2080 0.658897 TTTTGTCCGTTTGAGTCGGC 59.341 50.000 0.00 0.00 46.49 5.54
1884 2081 1.161563 TTTGTCCGTTTGAGTCGGCC 61.162 55.000 0.00 0.00 46.49 6.13
1885 2082 2.029964 GTCCGTTTGAGTCGGCCA 59.970 61.111 2.24 0.00 46.49 5.36
1886 2083 2.029964 TCCGTTTGAGTCGGCCAC 59.970 61.111 2.24 0.00 46.49 5.01
1887 2084 3.047877 CCGTTTGAGTCGGCCACC 61.048 66.667 2.24 0.00 41.48 4.61
1888 2085 3.047877 CGTTTGAGTCGGCCACCC 61.048 66.667 2.24 0.00 0.00 4.61
1910 2107 2.725641 GGCGTTCGCCCAGTTTTT 59.274 55.556 23.38 0.00 44.99 1.94
1927 2124 3.651803 TTTTTATTTGGGTCGGCAGTG 57.348 42.857 0.00 0.00 0.00 3.66
1928 2125 0.885196 TTTATTTGGGTCGGCAGTGC 59.115 50.000 6.55 6.55 0.00 4.40
1929 2126 1.302383 TTATTTGGGTCGGCAGTGCG 61.302 55.000 9.45 4.79 0.00 5.34
1946 2143 2.824041 GCCCAACGCACCGATCAT 60.824 61.111 0.00 0.00 37.47 2.45
1947 2144 3.101209 CCCAACGCACCGATCATG 58.899 61.111 0.00 0.00 0.00 3.07
1948 2145 2.472059 CCCAACGCACCGATCATGG 61.472 63.158 0.00 0.00 0.00 3.66
1949 2146 2.404789 CAACGCACCGATCATGGC 59.595 61.111 0.00 0.00 0.00 4.40
1950 2147 2.046411 AACGCACCGATCATGGCA 60.046 55.556 0.00 0.00 0.00 4.92
1951 2148 2.108514 AACGCACCGATCATGGCAG 61.109 57.895 0.00 0.00 0.00 4.85
1952 2149 3.945434 CGCACCGATCATGGCAGC 61.945 66.667 0.00 0.00 0.00 5.25
1953 2150 3.945434 GCACCGATCATGGCAGCG 61.945 66.667 0.00 0.00 0.00 5.18
1965 2162 2.515523 GCAGCGGCCATGTCTCAT 60.516 61.111 2.24 0.00 0.00 2.90
1966 2163 2.831366 GCAGCGGCCATGTCTCATG 61.831 63.158 2.24 3.11 0.00 3.07
1967 2164 2.515523 AGCGGCCATGTCTCATGC 60.516 61.111 2.24 0.00 0.00 4.06
1968 2165 3.589881 GCGGCCATGTCTCATGCC 61.590 66.667 2.24 8.14 40.54 4.40
1970 2167 2.903855 GGCCATGTCTCATGCCGG 60.904 66.667 0.00 0.00 33.59 6.13
1971 2168 3.589881 GCCATGTCTCATGCCGGC 61.590 66.667 22.73 22.73 0.00 6.13
1972 2169 2.124612 CCATGTCTCATGCCGGCA 60.125 61.111 34.80 34.80 0.00 5.69
1973 2170 2.475466 CCATGTCTCATGCCGGCAC 61.475 63.158 35.50 19.90 0.00 5.01
1974 2171 2.124570 ATGTCTCATGCCGGCACC 60.125 61.111 35.50 17.52 0.00 5.01
1975 2172 2.970379 ATGTCTCATGCCGGCACCA 61.970 57.895 35.50 22.60 0.00 4.17
1976 2173 3.127533 GTCTCATGCCGGCACCAC 61.128 66.667 35.50 21.36 0.00 4.16
1977 2174 4.758251 TCTCATGCCGGCACCACG 62.758 66.667 35.50 20.63 0.00 4.94
1988 2185 4.935495 CACCACGCACTGGCCAGT 62.935 66.667 33.20 33.20 45.32 4.00
1989 2186 4.626081 ACCACGCACTGGCCAGTC 62.626 66.667 35.79 26.18 45.32 3.51
2002 2199 3.055719 CAGTCGGCCGGCACAAAT 61.056 61.111 34.17 7.78 0.00 2.32
2003 2200 3.055719 AGTCGGCCGGCACAAATG 61.056 61.111 34.17 10.20 0.00 2.32
2014 2211 2.367030 GCACAAATGCCAGCACATAA 57.633 45.000 0.00 0.00 46.97 1.90
2015 2212 2.686235 GCACAAATGCCAGCACATAAA 58.314 42.857 0.00 0.00 46.97 1.40
2016 2213 3.065655 GCACAAATGCCAGCACATAAAA 58.934 40.909 0.00 0.00 46.97 1.52
2017 2214 3.497640 GCACAAATGCCAGCACATAAAAA 59.502 39.130 0.00 0.00 46.97 1.94
2036 2233 4.584327 AAAAAGGGTGGACTTGAATTCG 57.416 40.909 0.04 0.00 0.00 3.34
2037 2234 3.502123 AAAGGGTGGACTTGAATTCGA 57.498 42.857 0.04 0.00 0.00 3.71
2038 2235 2.474410 AGGGTGGACTTGAATTCGAC 57.526 50.000 0.04 0.00 0.00 4.20
2039 2236 1.003233 AGGGTGGACTTGAATTCGACC 59.997 52.381 7.96 7.96 40.26 4.79
2040 2237 1.271163 GGGTGGACTTGAATTCGACCA 60.271 52.381 16.18 0.96 42.17 4.02
2041 2238 1.804748 GGTGGACTTGAATTCGACCAC 59.195 52.381 20.24 20.24 40.59 4.16
2042 2239 1.459592 GTGGACTTGAATTCGACCACG 59.540 52.381 15.99 0.15 38.35 4.94
2043 2240 0.442699 GGACTTGAATTCGACCACGC 59.557 55.000 0.04 0.00 39.58 5.34
2044 2241 0.442699 GACTTGAATTCGACCACGCC 59.557 55.000 0.04 0.00 39.58 5.68
2045 2242 0.250124 ACTTGAATTCGACCACGCCA 60.250 50.000 0.04 0.00 39.58 5.69
2046 2243 1.086696 CTTGAATTCGACCACGCCAT 58.913 50.000 0.04 0.00 39.58 4.40
2047 2244 1.062587 CTTGAATTCGACCACGCCATC 59.937 52.381 0.04 0.00 39.58 3.51
2048 2245 0.036858 TGAATTCGACCACGCCATCA 60.037 50.000 0.04 0.00 39.58 3.07
2049 2246 0.373716 GAATTCGACCACGCCATCAC 59.626 55.000 0.00 0.00 39.58 3.06
2050 2247 1.358725 AATTCGACCACGCCATCACG 61.359 55.000 0.00 0.00 39.58 4.35
2051 2248 3.925362 TTCGACCACGCCATCACGG 62.925 63.158 0.00 0.00 39.58 4.94
2068 2265 4.408821 GCTCCCGTGGTCATGCCA 62.409 66.667 4.93 4.93 46.95 4.92
2075 2272 2.282391 TGGTCATGCCAGCACACC 60.282 61.111 13.44 13.44 43.61 4.16
2076 2273 2.034687 GGTCATGCCAGCACACCT 59.965 61.111 13.17 0.00 37.17 4.00
2077 2274 2.338015 GGTCATGCCAGCACACCTG 61.338 63.158 13.17 0.82 41.41 4.00
2078 2275 2.674033 TCATGCCAGCACACCTGC 60.674 61.111 0.00 0.00 44.63 4.85
2079 2276 3.755628 CATGCCAGCACACCTGCC 61.756 66.667 0.00 0.00 45.53 4.85
2085 2282 3.716195 AGCACACCTGCCGGCATA 61.716 61.111 32.87 8.24 45.53 3.14
2086 2283 3.508840 GCACACCTGCCGGCATAC 61.509 66.667 32.87 12.06 37.45 2.39
2087 2284 2.046411 CACACCTGCCGGCATACA 60.046 61.111 32.87 6.85 0.00 2.29
2088 2285 1.673993 CACACCTGCCGGCATACAA 60.674 57.895 32.87 6.37 0.00 2.41
2089 2286 1.074072 ACACCTGCCGGCATACAAA 59.926 52.632 32.87 5.45 0.00 2.83
2090 2287 0.538516 ACACCTGCCGGCATACAAAA 60.539 50.000 32.87 4.54 0.00 2.44
2091 2288 0.600557 CACCTGCCGGCATACAAAAA 59.399 50.000 32.87 3.62 0.00 1.94
2116 2313 4.221422 GCTCGCCGCCATAGACCA 62.221 66.667 0.00 0.00 0.00 4.02
2117 2314 2.279517 CTCGCCGCCATAGACCAC 60.280 66.667 0.00 0.00 0.00 4.16
2118 2315 2.758327 TCGCCGCCATAGACCACT 60.758 61.111 0.00 0.00 0.00 4.00
2119 2316 2.279517 CGCCGCCATAGACCACTC 60.280 66.667 0.00 0.00 0.00 3.51
2120 2317 2.279517 GCCGCCATAGACCACTCG 60.280 66.667 0.00 0.00 0.00 4.18
2121 2318 3.077519 GCCGCCATAGACCACTCGT 62.078 63.158 0.00 0.00 0.00 4.18
2122 2319 1.065928 CCGCCATAGACCACTCGTC 59.934 63.158 0.00 0.00 42.32 4.20
2123 2320 1.298413 CGCCATAGACCACTCGTCG 60.298 63.158 0.00 0.00 46.92 5.12
2124 2321 1.807886 GCCATAGACCACTCGTCGT 59.192 57.895 0.00 0.00 46.92 4.34
2125 2322 0.248539 GCCATAGACCACTCGTCGTC 60.249 60.000 0.00 0.00 46.92 4.20
2126 2323 0.027716 CCATAGACCACTCGTCGTCG 59.972 60.000 0.00 0.00 46.92 5.12
2127 2324 1.004595 CATAGACCACTCGTCGTCGA 58.995 55.000 4.42 4.42 46.92 4.20
2128 2325 1.395954 CATAGACCACTCGTCGTCGAA 59.604 52.381 6.19 0.00 46.92 3.71
2129 2326 0.792640 TAGACCACTCGTCGTCGAAC 59.207 55.000 6.19 0.00 46.92 3.95
2130 2327 0.883814 AGACCACTCGTCGTCGAACT 60.884 55.000 6.19 0.00 46.92 3.01
2131 2328 0.040603 GACCACTCGTCGTCGAACTT 60.041 55.000 6.19 0.00 45.61 2.66
2132 2329 0.317603 ACCACTCGTCGTCGAACTTG 60.318 55.000 6.19 3.98 45.61 3.16
2133 2330 0.040692 CCACTCGTCGTCGAACTTGA 60.041 55.000 6.19 0.00 45.61 3.02
2134 2331 1.319172 CACTCGTCGTCGAACTTGAG 58.681 55.000 6.19 5.10 45.61 3.02
2135 2332 0.942962 ACTCGTCGTCGAACTTGAGT 59.057 50.000 6.19 12.31 45.61 3.41
2136 2333 2.096565 CACTCGTCGTCGAACTTGAGTA 60.097 50.000 15.80 0.00 45.61 2.59
2137 2334 2.740981 ACTCGTCGTCGAACTTGAGTAT 59.259 45.455 15.06 0.00 45.61 2.12
2138 2335 3.092135 CTCGTCGTCGAACTTGAGTATG 58.908 50.000 6.19 0.00 45.61 2.39
2139 2336 2.481568 TCGTCGTCGAACTTGAGTATGT 59.518 45.455 1.37 0.00 43.34 2.29
2140 2337 2.839026 CGTCGTCGAACTTGAGTATGTC 59.161 50.000 0.00 0.00 39.71 3.06
2141 2338 2.839026 GTCGTCGAACTTGAGTATGTCG 59.161 50.000 0.00 0.00 0.00 4.35
2142 2339 2.159612 TCGTCGAACTTGAGTATGTCGG 60.160 50.000 0.00 0.00 0.00 4.79
2143 2340 1.918609 GTCGAACTTGAGTATGTCGGC 59.081 52.381 0.00 0.00 0.00 5.54
2144 2341 1.135199 TCGAACTTGAGTATGTCGGCC 60.135 52.381 0.00 0.00 0.00 6.13
2145 2342 1.135083 CGAACTTGAGTATGTCGGCCT 60.135 52.381 0.00 0.00 0.00 5.19
2146 2343 2.271800 GAACTTGAGTATGTCGGCCTG 58.728 52.381 0.00 0.00 0.00 4.85
2147 2344 0.108138 ACTTGAGTATGTCGGCCTGC 60.108 55.000 0.00 0.00 0.00 4.85
2148 2345 0.108186 CTTGAGTATGTCGGCCTGCA 60.108 55.000 0.00 0.00 0.00 4.41
2149 2346 0.541392 TTGAGTATGTCGGCCTGCAT 59.459 50.000 12.51 12.51 0.00 3.96
2150 2347 0.104855 TGAGTATGTCGGCCTGCATC 59.895 55.000 11.46 5.39 0.00 3.91
2151 2348 0.390860 GAGTATGTCGGCCTGCATCT 59.609 55.000 11.46 9.16 0.00 2.90
2152 2349 0.833287 AGTATGTCGGCCTGCATCTT 59.167 50.000 11.46 0.86 0.00 2.40
2153 2350 1.202580 AGTATGTCGGCCTGCATCTTC 60.203 52.381 11.46 5.52 0.00 2.87
2154 2351 1.123077 TATGTCGGCCTGCATCTTCT 58.877 50.000 11.46 0.00 0.00 2.85
2155 2352 0.179062 ATGTCGGCCTGCATCTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
2156 2353 1.880340 GTCGGCCTGCATCTTCTCG 60.880 63.158 0.00 0.00 0.00 4.04
2157 2354 2.052104 TCGGCCTGCATCTTCTCGA 61.052 57.895 0.00 0.00 0.00 4.04
2158 2355 1.153568 CGGCCTGCATCTTCTCGAA 60.154 57.895 0.00 0.00 0.00 3.71
2159 2356 1.424493 CGGCCTGCATCTTCTCGAAC 61.424 60.000 0.00 0.00 0.00 3.95
2160 2357 1.092345 GGCCTGCATCTTCTCGAACC 61.092 60.000 0.00 0.00 0.00 3.62
2161 2358 0.391661 GCCTGCATCTTCTCGAACCA 60.392 55.000 0.00 0.00 0.00 3.67
2162 2359 1.363744 CCTGCATCTTCTCGAACCAC 58.636 55.000 0.00 0.00 0.00 4.16
2163 2360 0.994995 CTGCATCTTCTCGAACCACG 59.005 55.000 0.00 0.00 44.09 4.94
2165 2362 0.992802 GCATCTTCTCGAACCACGAC 59.007 55.000 0.00 0.00 46.45 4.34
2166 2363 1.630148 CATCTTCTCGAACCACGACC 58.370 55.000 0.00 0.00 46.45 4.79
2167 2364 1.202582 CATCTTCTCGAACCACGACCT 59.797 52.381 0.00 0.00 46.45 3.85
2168 2365 0.879765 TCTTCTCGAACCACGACCTC 59.120 55.000 0.00 0.00 46.45 3.85
2169 2366 0.882474 CTTCTCGAACCACGACCTCT 59.118 55.000 0.00 0.00 46.45 3.69
2170 2367 1.269998 CTTCTCGAACCACGACCTCTT 59.730 52.381 0.00 0.00 46.45 2.85
2171 2368 0.879765 TCTCGAACCACGACCTCTTC 59.120 55.000 0.00 0.00 46.45 2.87
2172 2369 0.109226 CTCGAACCACGACCTCTTCC 60.109 60.000 0.00 0.00 46.45 3.46
2173 2370 0.538977 TCGAACCACGACCTCTTCCT 60.539 55.000 0.00 0.00 46.45 3.36
2174 2371 0.317479 CGAACCACGACCTCTTCCTT 59.683 55.000 0.00 0.00 45.77 3.36
2175 2372 1.797025 GAACCACGACCTCTTCCTTG 58.203 55.000 0.00 0.00 0.00 3.61
2176 2373 0.396811 AACCACGACCTCTTCCTTGG 59.603 55.000 0.00 0.00 32.15 3.61
2177 2374 0.471211 ACCACGACCTCTTCCTTGGA 60.471 55.000 0.00 0.00 30.89 3.53
2178 2375 0.247736 CCACGACCTCTTCCTTGGAG 59.752 60.000 0.00 0.00 0.00 3.86
2179 2376 1.257743 CACGACCTCTTCCTTGGAGA 58.742 55.000 0.00 0.00 33.03 3.71
2180 2377 1.067495 CACGACCTCTTCCTTGGAGAC 60.067 57.143 0.00 0.00 33.03 3.36
2181 2378 1.257743 CGACCTCTTCCTTGGAGACA 58.742 55.000 0.00 0.00 39.83 3.41
2182 2379 1.067495 CGACCTCTTCCTTGGAGACAC 60.067 57.143 0.00 0.00 42.67 3.67
2183 2380 0.969894 ACCTCTTCCTTGGAGACACG 59.030 55.000 0.00 0.00 42.67 4.49
2189 2386 2.616969 CCTTGGAGACACGGTGTTG 58.383 57.895 15.94 2.47 44.43 3.33
2190 2387 0.105964 CCTTGGAGACACGGTGTTGA 59.894 55.000 15.94 0.00 44.43 3.18
2191 2388 1.502231 CTTGGAGACACGGTGTTGAG 58.498 55.000 15.94 5.71 42.67 3.02
2192 2389 1.068588 CTTGGAGACACGGTGTTGAGA 59.931 52.381 15.94 0.00 42.67 3.27
2193 2390 1.338107 TGGAGACACGGTGTTGAGAT 58.662 50.000 15.94 0.00 33.40 2.75
2194 2391 1.272490 TGGAGACACGGTGTTGAGATC 59.728 52.381 15.94 8.63 33.40 2.75
2195 2392 1.404315 GGAGACACGGTGTTGAGATCC 60.404 57.143 15.94 13.33 0.00 3.36
2196 2393 1.272490 GAGACACGGTGTTGAGATCCA 59.728 52.381 15.94 0.00 0.00 3.41
2197 2394 1.000955 AGACACGGTGTTGAGATCCAC 59.999 52.381 15.94 0.00 0.00 4.02
2198 2395 0.034896 ACACGGTGTTGAGATCCACC 59.965 55.000 8.21 8.40 46.20 4.61
2202 2399 2.859165 GGTGTTGAGATCCACCTTCA 57.141 50.000 10.62 0.00 46.17 3.02
2203 2400 3.356529 GGTGTTGAGATCCACCTTCAT 57.643 47.619 10.62 0.00 46.17 2.57
2204 2401 3.012518 GGTGTTGAGATCCACCTTCATG 58.987 50.000 10.62 0.00 46.17 3.07
2205 2402 3.307691 GGTGTTGAGATCCACCTTCATGA 60.308 47.826 10.62 0.00 46.17 3.07
2206 2403 4.521146 GTGTTGAGATCCACCTTCATGAT 58.479 43.478 0.00 0.00 0.00 2.45
2207 2404 4.574013 GTGTTGAGATCCACCTTCATGATC 59.426 45.833 0.00 0.00 36.08 2.92
2208 2405 4.472470 TGTTGAGATCCACCTTCATGATCT 59.528 41.667 0.00 1.12 45.91 2.75
2211 2408 3.662078 AGATCCACCTTCATGATCTCCA 58.338 45.455 0.00 0.00 40.88 3.86
2212 2409 3.390639 AGATCCACCTTCATGATCTCCAC 59.609 47.826 0.00 0.00 40.88 4.02
2213 2410 1.839994 TCCACCTTCATGATCTCCACC 59.160 52.381 0.00 0.00 0.00 4.61
2214 2411 1.133976 CCACCTTCATGATCTCCACCC 60.134 57.143 0.00 0.00 0.00 4.61
2215 2412 1.133976 CACCTTCATGATCTCCACCCC 60.134 57.143 0.00 0.00 0.00 4.95
2216 2413 0.107456 CCTTCATGATCTCCACCCCG 59.893 60.000 0.00 0.00 0.00 5.73
2217 2414 0.107456 CTTCATGATCTCCACCCCGG 59.893 60.000 0.00 0.00 0.00 5.73
2218 2415 0.620410 TTCATGATCTCCACCCCGGT 60.620 55.000 0.00 0.00 35.57 5.28
2219 2416 1.048724 TCATGATCTCCACCCCGGTC 61.049 60.000 0.00 0.00 35.57 4.79
2220 2417 1.002921 ATGATCTCCACCCCGGTCA 59.997 57.895 0.00 0.00 35.57 4.02
2221 2418 0.400525 ATGATCTCCACCCCGGTCAT 60.401 55.000 0.00 0.00 35.57 3.06
2222 2419 1.048724 TGATCTCCACCCCGGTCATC 61.049 60.000 0.00 0.00 35.57 2.92
2223 2420 1.002921 ATCTCCACCCCGGTCATCA 59.997 57.895 0.00 0.00 35.57 3.07
2224 2421 0.400525 ATCTCCACCCCGGTCATCAT 60.401 55.000 0.00 0.00 35.57 2.45
2225 2422 1.146930 CTCCACCCCGGTCATCATG 59.853 63.158 0.00 0.00 35.57 3.07
2226 2423 2.516930 CCACCCCGGTCATCATGC 60.517 66.667 0.00 0.00 0.00 4.06
2227 2424 2.591753 CACCCCGGTCATCATGCT 59.408 61.111 0.00 0.00 0.00 3.79
2228 2425 1.524621 CACCCCGGTCATCATGCTC 60.525 63.158 0.00 0.00 0.00 4.26
2229 2426 2.280389 CCCCGGTCATCATGCTCG 60.280 66.667 0.00 0.00 0.00 5.03
2230 2427 2.969238 CCCGGTCATCATGCTCGC 60.969 66.667 0.00 0.00 0.00 5.03
2231 2428 3.333189 CCGGTCATCATGCTCGCG 61.333 66.667 0.00 0.00 0.00 5.87
2232 2429 2.278792 CGGTCATCATGCTCGCGA 60.279 61.111 9.26 9.26 0.00 5.87
2233 2430 2.298629 CGGTCATCATGCTCGCGAG 61.299 63.158 31.37 31.37 0.00 5.03
2234 2431 1.066422 GGTCATCATGCTCGCGAGA 59.934 57.895 38.74 23.38 39.12 4.04
2248 2445 2.074124 CGAGAGCCACTTCTTTCGC 58.926 57.895 0.00 0.00 34.68 4.70
2249 2446 1.355066 CGAGAGCCACTTCTTTCGCC 61.355 60.000 0.00 0.00 34.68 5.54
2250 2447 0.036858 GAGAGCCACTTCTTTCGCCT 60.037 55.000 0.00 0.00 0.00 5.52
2251 2448 0.398318 AGAGCCACTTCTTTCGCCTT 59.602 50.000 0.00 0.00 0.00 4.35
2252 2449 0.519077 GAGCCACTTCTTTCGCCTTG 59.481 55.000 0.00 0.00 0.00 3.61
2253 2450 0.890996 AGCCACTTCTTTCGCCTTGG 60.891 55.000 0.00 0.00 0.00 3.61
2254 2451 1.172812 GCCACTTCTTTCGCCTTGGT 61.173 55.000 0.00 0.00 0.00 3.67
2255 2452 0.875059 CCACTTCTTTCGCCTTGGTC 59.125 55.000 0.00 0.00 0.00 4.02
2256 2453 1.543429 CCACTTCTTTCGCCTTGGTCT 60.543 52.381 0.00 0.00 0.00 3.85
2257 2454 2.222027 CACTTCTTTCGCCTTGGTCTT 58.778 47.619 0.00 0.00 0.00 3.01
2258 2455 2.031682 CACTTCTTTCGCCTTGGTCTTG 60.032 50.000 0.00 0.00 0.00 3.02
2259 2456 1.537202 CTTCTTTCGCCTTGGTCTTGG 59.463 52.381 0.00 0.00 0.00 3.61
2260 2457 0.889186 TCTTTCGCCTTGGTCTTGGC 60.889 55.000 0.00 0.00 45.25 4.52
2264 2461 2.644992 GCCTTGGTCTTGGCGTTG 59.355 61.111 0.00 0.00 39.71 4.10
2265 2462 2.919494 GCCTTGGTCTTGGCGTTGG 61.919 63.158 0.00 0.00 39.71 3.77
2266 2463 2.644992 CTTGGTCTTGGCGTTGGC 59.355 61.111 0.00 0.00 38.90 4.52
2267 2464 3.254014 CTTGGTCTTGGCGTTGGCG 62.254 63.158 0.00 0.00 41.24 5.69
2277 2474 4.514577 CGTTGGCGGCCTCGATCT 62.515 66.667 24.40 0.00 39.00 2.75
2278 2475 2.586357 GTTGGCGGCCTCGATCTC 60.586 66.667 21.46 0.00 39.00 2.75
2279 2476 2.759973 TTGGCGGCCTCGATCTCT 60.760 61.111 21.46 0.00 39.00 3.10
2280 2477 1.455032 TTGGCGGCCTCGATCTCTA 60.455 57.895 21.46 0.00 39.00 2.43
2281 2478 1.456196 TTGGCGGCCTCGATCTCTAG 61.456 60.000 21.46 0.00 39.00 2.43
2282 2479 2.257067 GCGGCCTCGATCTCTAGC 59.743 66.667 0.00 0.00 39.00 3.42
2283 2480 2.556459 GCGGCCTCGATCTCTAGCA 61.556 63.158 0.00 0.00 39.00 3.49
2284 2481 1.872197 GCGGCCTCGATCTCTAGCAT 61.872 60.000 0.00 0.00 39.00 3.79
2285 2482 0.170116 CGGCCTCGATCTCTAGCATC 59.830 60.000 0.00 0.00 39.00 3.91
2286 2483 1.544724 GGCCTCGATCTCTAGCATCT 58.455 55.000 0.00 0.00 0.00 2.90
2287 2484 1.892474 GGCCTCGATCTCTAGCATCTT 59.108 52.381 0.00 0.00 0.00 2.40
2288 2485 2.352617 GGCCTCGATCTCTAGCATCTTG 60.353 54.545 0.00 0.00 0.00 3.02
2289 2486 2.352617 GCCTCGATCTCTAGCATCTTGG 60.353 54.545 0.00 0.00 0.00 3.61
2290 2487 2.352617 CCTCGATCTCTAGCATCTTGGC 60.353 54.545 0.00 0.00 0.00 4.52
2292 2489 2.961741 TCGATCTCTAGCATCTTGGCTT 59.038 45.455 0.00 0.00 42.71 4.35
2293 2490 3.058450 CGATCTCTAGCATCTTGGCTTG 58.942 50.000 0.00 0.00 42.71 4.01
2294 2491 2.322355 TCTCTAGCATCTTGGCTTGC 57.678 50.000 0.00 0.00 42.71 4.01
2296 2493 2.238144 TCTCTAGCATCTTGGCTTGCTT 59.762 45.455 2.43 0.00 46.71 3.91
2297 2494 2.613133 CTCTAGCATCTTGGCTTGCTTC 59.387 50.000 2.43 0.00 46.71 3.86
2298 2495 2.238144 TCTAGCATCTTGGCTTGCTTCT 59.762 45.455 2.43 0.00 46.71 2.85
2299 2496 1.461559 AGCATCTTGGCTTGCTTCTC 58.538 50.000 0.00 0.00 46.71 2.87
2300 2497 0.455005 GCATCTTGGCTTGCTTCTCC 59.545 55.000 0.00 0.00 35.95 3.71
2301 2498 0.731417 CATCTTGGCTTGCTTCTCCG 59.269 55.000 0.00 0.00 0.00 4.63
2302 2499 1.028868 ATCTTGGCTTGCTTCTCCGC 61.029 55.000 0.00 0.00 0.00 5.54
2303 2500 2.672996 TTGGCTTGCTTCTCCGCC 60.673 61.111 0.00 0.00 42.78 6.13
2304 2501 3.196207 TTGGCTTGCTTCTCCGCCT 62.196 57.895 0.00 0.00 42.90 5.52
2305 2502 2.821810 GGCTTGCTTCTCCGCCTC 60.822 66.667 0.00 0.00 39.42 4.70
2306 2503 2.821810 GCTTGCTTCTCCGCCTCC 60.822 66.667 0.00 0.00 0.00 4.30
2307 2504 2.665000 CTTGCTTCTCCGCCTCCA 59.335 61.111 0.00 0.00 0.00 3.86
2308 2505 1.449246 CTTGCTTCTCCGCCTCCAG 60.449 63.158 0.00 0.00 0.00 3.86
2309 2506 3.612247 TTGCTTCTCCGCCTCCAGC 62.612 63.158 0.00 0.00 38.52 4.85
2310 2507 3.780173 GCTTCTCCGCCTCCAGCT 61.780 66.667 0.00 0.00 40.39 4.24
2311 2508 2.498726 CTTCTCCGCCTCCAGCTC 59.501 66.667 0.00 0.00 40.39 4.09
2312 2509 3.423162 CTTCTCCGCCTCCAGCTCG 62.423 68.421 0.00 0.00 40.39 5.03
2313 2510 3.938637 TTCTCCGCCTCCAGCTCGA 62.939 63.158 0.00 0.00 40.39 4.04
2314 2511 3.452786 CTCCGCCTCCAGCTCGAA 61.453 66.667 0.00 0.00 40.39 3.71
2315 2512 3.708220 CTCCGCCTCCAGCTCGAAC 62.708 68.421 0.00 0.00 40.39 3.95
2316 2513 4.069232 CCGCCTCCAGCTCGAACA 62.069 66.667 0.00 0.00 40.39 3.18
2317 2514 2.185350 CGCCTCCAGCTCGAACAT 59.815 61.111 0.00 0.00 40.39 2.71
2318 2515 1.880340 CGCCTCCAGCTCGAACATC 60.880 63.158 0.00 0.00 40.39 3.06
2319 2516 1.519719 GCCTCCAGCTCGAACATCT 59.480 57.895 0.00 0.00 38.99 2.90
2320 2517 0.107945 GCCTCCAGCTCGAACATCTT 60.108 55.000 0.00 0.00 38.99 2.40
2321 2518 1.649664 CCTCCAGCTCGAACATCTTG 58.350 55.000 0.00 0.00 0.00 3.02
2322 2519 1.649664 CTCCAGCTCGAACATCTTGG 58.350 55.000 0.00 0.00 0.00 3.61
2323 2520 0.391661 TCCAGCTCGAACATCTTGGC 60.392 55.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.557099 TCCTGATAGTCTGTTGCCGT 58.443 50.000 0.00 0.00 0.00 5.68
24 25 6.818644 TCAGAAAACAGTAAGCTGATGGTATC 59.181 38.462 1.30 0.00 45.28 2.24
56 57 1.737236 TCAATGCCAATCACAGCGTAC 59.263 47.619 0.00 0.00 0.00 3.67
60 61 2.480759 GGATGTCAATGCCAATCACAGC 60.481 50.000 0.00 0.00 0.00 4.40
104 189 6.386654 GGAGAAATTTCGCTGTTTATTTCCA 58.613 36.000 19.41 0.00 37.59 3.53
251 344 1.338337 CTGTACTGTCCCAGCCTATCG 59.662 57.143 0.00 0.00 34.37 2.92
265 358 1.817447 GACAGCCTTCCGTACTGTACT 59.183 52.381 15.35 0.00 44.40 2.73
330 428 1.817099 CATCAGGACGAGCAAGCCC 60.817 63.158 0.00 0.00 0.00 5.19
332 430 2.806856 CGCATCAGGACGAGCAAGC 61.807 63.158 0.00 0.00 0.00 4.01
374 472 3.909430 GACAAGTGTGTCGATCAAGGTA 58.091 45.455 0.00 0.00 44.58 3.08
385 483 3.118408 TCTGCTTTGGTAGACAAGTGTGT 60.118 43.478 0.00 0.00 40.82 3.72
421 519 5.183140 ACGGTATCATTTCTCTTTGGGTTTG 59.817 40.000 0.00 0.00 0.00 2.93
454 552 4.080299 ACACTCAGTGTTCTTTTTCCTCCT 60.080 41.667 3.98 0.00 45.08 3.69
455 553 4.200092 ACACTCAGTGTTCTTTTTCCTCC 58.800 43.478 3.98 0.00 45.08 4.30
518 618 6.663734 AGCTGCTTGGGTATTTAATCTAAGT 58.336 36.000 0.00 0.00 0.00 2.24
519 619 7.573968 AAGCTGCTTGGGTATTTAATCTAAG 57.426 36.000 15.16 0.00 0.00 2.18
520 620 7.954666 AAAGCTGCTTGGGTATTTAATCTAA 57.045 32.000 16.73 0.00 0.00 2.10
521 621 7.834181 AGAAAAGCTGCTTGGGTATTTAATCTA 59.166 33.333 16.73 0.00 0.00 1.98
522 622 6.665248 AGAAAAGCTGCTTGGGTATTTAATCT 59.335 34.615 16.73 4.62 0.00 2.40
523 623 6.753744 CAGAAAAGCTGCTTGGGTATTTAATC 59.246 38.462 16.73 2.60 37.90 1.75
527 627 4.151883 TCAGAAAAGCTGCTTGGGTATTT 58.848 39.130 16.73 5.00 44.52 1.40
528 628 3.766545 TCAGAAAAGCTGCTTGGGTATT 58.233 40.909 16.73 5.79 44.52 1.89
531 631 1.959282 CTTCAGAAAAGCTGCTTGGGT 59.041 47.619 16.73 4.39 44.52 4.51
532 632 1.336609 GCTTCAGAAAAGCTGCTTGGG 60.337 52.381 16.73 6.13 44.52 4.12
533 633 1.336609 GGCTTCAGAAAAGCTGCTTGG 60.337 52.381 16.73 6.48 44.52 3.61
534 634 1.338973 TGGCTTCAGAAAAGCTGCTTG 59.661 47.619 16.73 4.03 44.52 4.01
535 635 1.696063 TGGCTTCAGAAAAGCTGCTT 58.304 45.000 9.53 9.53 44.52 3.91
536 636 1.696063 TTGGCTTCAGAAAAGCTGCT 58.304 45.000 9.40 0.00 44.52 4.24
537 637 2.738013 ATTGGCTTCAGAAAAGCTGC 57.262 45.000 9.40 0.00 44.52 5.25
538 638 4.022935 TGTGTATTGGCTTCAGAAAAGCTG 60.023 41.667 9.40 0.00 46.31 4.24
539 639 4.144297 TGTGTATTGGCTTCAGAAAAGCT 58.856 39.130 9.40 0.00 42.62 3.74
540 640 4.479619 CTGTGTATTGGCTTCAGAAAAGC 58.520 43.478 1.16 1.16 42.30 3.51
541 641 4.217118 AGCTGTGTATTGGCTTCAGAAAAG 59.783 41.667 0.00 0.00 31.81 2.27
542 642 4.144297 AGCTGTGTATTGGCTTCAGAAAA 58.856 39.130 0.00 0.00 31.81 2.29
543 643 3.754965 AGCTGTGTATTGGCTTCAGAAA 58.245 40.909 0.00 0.00 31.81 2.52
544 644 3.423539 AGCTGTGTATTGGCTTCAGAA 57.576 42.857 0.00 0.00 31.81 3.02
545 645 3.515502 AGTAGCTGTGTATTGGCTTCAGA 59.484 43.478 0.00 0.00 37.50 3.27
546 646 3.866651 AGTAGCTGTGTATTGGCTTCAG 58.133 45.455 0.00 0.00 37.50 3.02
547 647 3.981071 AGTAGCTGTGTATTGGCTTCA 57.019 42.857 0.00 0.00 37.50 3.02
548 648 5.629079 AAAAGTAGCTGTGTATTGGCTTC 57.371 39.130 0.00 0.00 37.50 3.86
605 705 1.068434 CACAAACCGGCCTGAAAATGT 59.932 47.619 0.00 0.00 0.00 2.71
608 708 1.135333 GAACACAAACCGGCCTGAAAA 59.865 47.619 0.00 0.00 0.00 2.29
617 717 1.003545 CAGTGCTCAGAACACAAACCG 60.004 52.381 6.72 0.00 40.59 4.44
692 800 2.035449 TGTTATTAGTCTCCCATCGCGG 59.965 50.000 6.13 0.00 0.00 6.46
714 823 3.520569 GAAGAGACCAGAGAATCAGTGC 58.479 50.000 0.00 0.00 37.82 4.40
718 827 4.277476 GAGAGGAAGAGACCAGAGAATCA 58.723 47.826 0.00 0.00 37.82 2.57
720 829 3.053991 TCGAGAGGAAGAGACCAGAGAAT 60.054 47.826 0.00 0.00 0.00 2.40
821 954 4.209288 CGTGTATTTATAGAGCCACAGTGC 59.791 45.833 0.00 0.00 0.00 4.40
857 990 2.042464 CTGCTAGCTTATGGGAGGTCA 58.958 52.381 17.23 0.00 0.00 4.02
877 1010 3.861840 TGTGAGTTCTATTGTGCTAGGC 58.138 45.455 0.00 0.00 0.00 3.93
878 1011 4.272018 GCATGTGAGTTCTATTGTGCTAGG 59.728 45.833 0.00 0.00 0.00 3.02
879 1012 4.272018 GGCATGTGAGTTCTATTGTGCTAG 59.728 45.833 0.00 0.00 0.00 3.42
880 1013 4.191544 GGCATGTGAGTTCTATTGTGCTA 58.808 43.478 0.00 0.00 0.00 3.49
881 1014 3.012518 GGCATGTGAGTTCTATTGTGCT 58.987 45.455 0.00 0.00 0.00 4.40
882 1015 2.749076 TGGCATGTGAGTTCTATTGTGC 59.251 45.455 0.00 0.00 0.00 4.57
883 1016 4.005650 ACTGGCATGTGAGTTCTATTGTG 58.994 43.478 0.00 0.00 0.00 3.33
884 1017 4.292186 ACTGGCATGTGAGTTCTATTGT 57.708 40.909 0.00 0.00 0.00 2.71
894 1027 4.157656 GGCTAAAAATGTACTGGCATGTGA 59.842 41.667 0.00 0.00 0.00 3.58
903 1036 4.216257 CACACAGCAGGCTAAAAATGTACT 59.784 41.667 0.00 0.00 0.00 2.73
904 1037 4.475944 CACACAGCAGGCTAAAAATGTAC 58.524 43.478 0.00 0.00 0.00 2.90
973 1115 2.186160 TGGGCGTGCAACTCACAAG 61.186 57.895 0.00 0.00 45.92 3.16
1104 1246 2.131067 CGCCTCCTTCTCCTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
1257 1399 1.984570 CTCCCCGTGCTCTGAAGGA 60.985 63.158 0.00 0.00 0.00 3.36
1260 1402 1.984570 CTCCTCCCCGTGCTCTGAA 60.985 63.158 0.00 0.00 0.00 3.02
1338 1480 4.482952 ACTAATTAAGTCCAGTTCCCCG 57.517 45.455 0.00 0.00 30.33 5.73
1359 1501 5.303589 ACACTGTACCAAGCTAGTAACAAGA 59.696 40.000 0.00 0.00 0.00 3.02
1360 1502 5.539048 ACACTGTACCAAGCTAGTAACAAG 58.461 41.667 0.00 0.00 0.00 3.16
1362 1504 6.434965 TCATACACTGTACCAAGCTAGTAACA 59.565 38.462 0.00 0.00 0.00 2.41
1364 1506 7.417456 CCATCATACACTGTACCAAGCTAGTAA 60.417 40.741 0.00 0.00 0.00 2.24
1365 1507 6.040504 CCATCATACACTGTACCAAGCTAGTA 59.959 42.308 0.00 0.00 0.00 1.82
1378 1520 3.603532 AGAACAGCACCATCATACACTG 58.396 45.455 0.00 0.00 0.00 3.66
1379 1521 3.369892 GGAGAACAGCACCATCATACACT 60.370 47.826 0.00 0.00 0.00 3.55
1388 1530 1.045407 AACGTAGGAGAACAGCACCA 58.955 50.000 0.00 0.00 0.00 4.17
1393 1535 1.939838 GCCCACAACGTAGGAGAACAG 60.940 57.143 3.41 0.00 0.00 3.16
1397 1539 0.541063 TGAGCCCACAACGTAGGAGA 60.541 55.000 3.41 0.00 0.00 3.71
1398 1540 0.108615 CTGAGCCCACAACGTAGGAG 60.109 60.000 3.41 0.00 0.00 3.69
1442 1584 3.253677 AGAACCCGACGCTAGATGATTAG 59.746 47.826 0.00 0.00 0.00 1.73
1443 1585 3.220110 AGAACCCGACGCTAGATGATTA 58.780 45.455 0.00 0.00 0.00 1.75
1444 1586 2.032620 AGAACCCGACGCTAGATGATT 58.967 47.619 0.00 0.00 0.00 2.57
1459 1610 6.018669 CGCATACAGGAAATAGAAAGAGAACC 60.019 42.308 0.00 0.00 0.00 3.62
1483 1634 1.202154 CCAGACTGCCGTACTTCTACG 60.202 57.143 0.00 0.00 44.62 3.51
1484 1635 2.089980 TCCAGACTGCCGTACTTCTAC 58.910 52.381 0.00 0.00 0.00 2.59
1485 1636 2.089980 GTCCAGACTGCCGTACTTCTA 58.910 52.381 0.00 0.00 0.00 2.10
1487 1638 0.601558 TGTCCAGACTGCCGTACTTC 59.398 55.000 0.00 0.00 0.00 3.01
1495 1682 3.194542 AGAGAGTTACATGTCCAGACTGC 59.805 47.826 0.00 0.00 0.00 4.40
1500 1687 3.446873 AGCAGAGAGAGTTACATGTCCAG 59.553 47.826 0.00 0.00 0.00 3.86
1513 1700 4.530875 TGTATCAGACATGAGCAGAGAGA 58.469 43.478 0.00 0.00 39.29 3.10
1516 1703 4.652421 ACTGTATCAGACATGAGCAGAG 57.348 45.455 0.00 3.63 41.30 3.35
1611 1807 7.148820 GCAGTTTAGCAAAAGCGAAATTCAATA 60.149 33.333 0.00 0.00 0.00 1.90
1647 1843 7.437748 TCGACTGAGAAGAGAGAAAGAAAAAT 58.562 34.615 0.00 0.00 0.00 1.82
1670 1867 0.101040 ATCCCACGCATGCAAAATCG 59.899 50.000 19.57 2.13 0.00 3.34
1741 1938 4.310769 ACAAAAGATTCCTCAGTCTGACG 58.689 43.478 0.00 0.00 0.00 4.35
1782 1979 2.184533 TCCTCATAGGCCGAGTTTCAA 58.815 47.619 0.00 0.00 34.61 2.69
1783 1980 1.860641 TCCTCATAGGCCGAGTTTCA 58.139 50.000 0.00 0.00 34.61 2.69
1784 1981 2.630580 AGATCCTCATAGGCCGAGTTTC 59.369 50.000 0.00 0.00 34.61 2.78
1815 2012 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
1816 2013 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
1817 2014 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
1820 2017 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
1821 2018 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
1831 2028 3.719144 CGTTCGTTTGGGTCGGCC 61.719 66.667 0.00 0.00 0.00 6.13
1832 2029 3.719144 CCGTTCGTTTGGGTCGGC 61.719 66.667 0.00 0.00 35.01 5.54
1833 2030 3.719144 GCCGTTCGTTTGGGTCGG 61.719 66.667 0.00 0.00 43.37 4.79
1834 2031 4.067016 CGCCGTTCGTTTGGGTCG 62.067 66.667 0.00 0.00 0.00 4.79
1835 2032 4.379143 GCGCCGTTCGTTTGGGTC 62.379 66.667 0.00 0.00 41.07 4.46
1837 2034 2.741116 AAATGCGCCGTTCGTTTGGG 62.741 55.000 4.18 0.00 41.07 4.12
1838 2035 1.371145 AAATGCGCCGTTCGTTTGG 60.371 52.632 4.18 0.00 41.07 3.28
1839 2036 0.932585 ACAAATGCGCCGTTCGTTTG 60.933 50.000 4.18 9.13 38.97 2.93
1840 2037 0.659123 GACAAATGCGCCGTTCGTTT 60.659 50.000 4.18 0.00 41.07 3.60
1841 2038 1.082366 GACAAATGCGCCGTTCGTT 60.082 52.632 4.18 0.00 41.07 3.85
1842 2039 2.554272 GACAAATGCGCCGTTCGT 59.446 55.556 4.18 0.00 41.07 3.85
1843 2040 2.202298 GGACAAATGCGCCGTTCG 60.202 61.111 4.18 0.00 42.12 3.95
1844 2041 2.202298 CGGACAAATGCGCCGTTC 60.202 61.111 4.18 0.00 40.17 3.95
1848 2045 2.893671 AAAAACGGACAAATGCGCC 58.106 47.368 4.18 0.00 44.76 6.53
1871 2068 3.047877 GGGTGGCCGACTCAAACG 61.048 66.667 0.00 0.00 0.00 3.60
1872 2069 3.047877 CGGGTGGCCGACTCAAAC 61.048 66.667 0.00 0.00 34.88 2.93
1873 2070 3.524648 GACGGGTGGCCGACTCAAA 62.525 63.158 0.00 0.00 36.94 2.69
1874 2071 3.998672 GACGGGTGGCCGACTCAA 61.999 66.667 0.00 0.00 36.94 3.02
1907 2104 2.288518 GCACTGCCGACCCAAATAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
1908 2105 1.271102 GCACTGCCGACCCAAATAAAA 59.729 47.619 0.00 0.00 0.00 1.52
1909 2106 0.885196 GCACTGCCGACCCAAATAAA 59.115 50.000 0.00 0.00 0.00 1.40
1910 2107 1.302383 CGCACTGCCGACCCAAATAA 61.302 55.000 0.00 0.00 0.00 1.40
1911 2108 1.743623 CGCACTGCCGACCCAAATA 60.744 57.895 0.00 0.00 0.00 1.40
1912 2109 3.055719 CGCACTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
1929 2126 2.824041 ATGATCGGTGCGTTGGGC 60.824 61.111 0.00 0.00 43.96 5.36
1930 2127 2.472059 CCATGATCGGTGCGTTGGG 61.472 63.158 0.00 0.00 0.00 4.12
1931 2128 3.101209 CCATGATCGGTGCGTTGG 58.899 61.111 0.00 0.00 0.00 3.77
1932 2129 2.313717 CTGCCATGATCGGTGCGTTG 62.314 60.000 0.00 0.00 0.00 4.10
1933 2130 2.046411 TGCCATGATCGGTGCGTT 60.046 55.556 0.00 0.00 0.00 4.84
1934 2131 2.512286 CTGCCATGATCGGTGCGT 60.512 61.111 0.00 0.00 0.00 5.24
1935 2132 3.945434 GCTGCCATGATCGGTGCG 61.945 66.667 0.00 0.00 0.00 5.34
1936 2133 3.945434 CGCTGCCATGATCGGTGC 61.945 66.667 0.00 0.00 0.00 5.01
1937 2134 3.274586 CCGCTGCCATGATCGGTG 61.275 66.667 0.00 0.00 37.33 4.94
1948 2145 2.515523 ATGAGACATGGCCGCTGC 60.516 61.111 0.00 0.00 0.00 5.25
1949 2146 2.831366 GCATGAGACATGGCCGCTG 61.831 63.158 12.56 0.00 0.00 5.18
1950 2147 2.515523 GCATGAGACATGGCCGCT 60.516 61.111 12.56 0.00 0.00 5.52
1951 2148 3.589881 GGCATGAGACATGGCCGC 61.590 66.667 21.83 5.42 38.48 6.53
1953 2150 2.903855 CCGGCATGAGACATGGCC 60.904 66.667 24.71 17.98 40.95 5.36
1954 2151 3.589881 GCCGGCATGAGACATGGC 61.590 66.667 24.80 22.27 40.66 4.40
1955 2152 2.124612 TGCCGGCATGAGACATGG 60.125 61.111 29.03 0.00 0.00 3.66
1956 2153 2.475466 GGTGCCGGCATGAGACATG 61.475 63.158 35.23 7.29 0.00 3.21
1957 2154 2.124570 GGTGCCGGCATGAGACAT 60.125 61.111 35.23 0.00 0.00 3.06
1958 2155 3.635191 TGGTGCCGGCATGAGACA 61.635 61.111 35.23 22.49 0.00 3.41
1959 2156 3.127533 GTGGTGCCGGCATGAGAC 61.128 66.667 35.23 21.70 0.00 3.36
1960 2157 4.758251 CGTGGTGCCGGCATGAGA 62.758 66.667 35.23 14.10 0.00 3.27
1985 2182 3.055719 ATTTGTGCCGGCCGACTG 61.056 61.111 30.73 11.80 0.00 3.51
1986 2183 3.055719 CATTTGTGCCGGCCGACT 61.056 61.111 30.73 6.59 0.00 4.18
1987 2184 4.776647 GCATTTGTGCCGGCCGAC 62.777 66.667 30.73 18.13 0.00 4.79
1995 2192 2.367030 TTATGTGCTGGCATTTGTGC 57.633 45.000 0.00 0.00 0.00 4.57
2015 2212 4.037565 GTCGAATTCAAGTCCACCCTTTTT 59.962 41.667 6.22 0.00 0.00 1.94
2016 2213 3.568430 GTCGAATTCAAGTCCACCCTTTT 59.432 43.478 6.22 0.00 0.00 2.27
2017 2214 3.146847 GTCGAATTCAAGTCCACCCTTT 58.853 45.455 6.22 0.00 0.00 3.11
2018 2215 2.552373 GGTCGAATTCAAGTCCACCCTT 60.552 50.000 6.22 0.00 0.00 3.95
2019 2216 1.003233 GGTCGAATTCAAGTCCACCCT 59.997 52.381 6.22 0.00 0.00 4.34
2020 2217 1.271163 TGGTCGAATTCAAGTCCACCC 60.271 52.381 6.22 0.00 0.00 4.61
2021 2218 1.804748 GTGGTCGAATTCAAGTCCACC 59.195 52.381 18.96 0.00 39.25 4.61
2022 2219 1.459592 CGTGGTCGAATTCAAGTCCAC 59.540 52.381 19.39 19.39 41.00 4.02
2023 2220 1.790755 CGTGGTCGAATTCAAGTCCA 58.209 50.000 6.22 5.19 39.71 4.02
2024 2221 0.442699 GCGTGGTCGAATTCAAGTCC 59.557 55.000 6.22 2.67 39.71 3.85
2025 2222 0.442699 GGCGTGGTCGAATTCAAGTC 59.557 55.000 6.22 0.00 39.71 3.01
2026 2223 0.250124 TGGCGTGGTCGAATTCAAGT 60.250 50.000 6.22 0.00 39.71 3.16
2027 2224 1.062587 GATGGCGTGGTCGAATTCAAG 59.937 52.381 6.22 0.00 39.71 3.02
2028 2225 1.083489 GATGGCGTGGTCGAATTCAA 58.917 50.000 6.22 0.00 39.71 2.69
2029 2226 0.036858 TGATGGCGTGGTCGAATTCA 60.037 50.000 6.22 0.00 39.71 2.57
2030 2227 0.373716 GTGATGGCGTGGTCGAATTC 59.626 55.000 0.00 0.00 39.71 2.17
2031 2228 1.358725 CGTGATGGCGTGGTCGAATT 61.359 55.000 0.00 0.00 39.71 2.17
2032 2229 1.809619 CGTGATGGCGTGGTCGAAT 60.810 57.895 0.00 0.00 39.71 3.34
2033 2230 2.431771 CGTGATGGCGTGGTCGAA 60.432 61.111 0.00 0.00 39.71 3.71
2034 2231 4.429212 CCGTGATGGCGTGGTCGA 62.429 66.667 0.00 0.00 39.71 4.20
2051 2248 4.408821 TGGCATGACCACGGGAGC 62.409 66.667 0.00 0.00 46.36 4.70
2052 2249 2.124983 CTGGCATGACCACGGGAG 60.125 66.667 0.00 0.00 46.36 4.30
2053 2250 4.408821 GCTGGCATGACCACGGGA 62.409 66.667 0.00 0.00 46.36 5.14
2054 2251 4.720902 TGCTGGCATGACCACGGG 62.721 66.667 0.00 0.00 46.36 5.28
2055 2252 3.434319 GTGCTGGCATGACCACGG 61.434 66.667 0.00 0.00 46.36 4.94
2056 2253 2.669229 TGTGCTGGCATGACCACG 60.669 61.111 0.00 0.00 46.36 4.94
2057 2254 2.629656 GGTGTGCTGGCATGACCAC 61.630 63.158 16.70 11.60 46.36 4.16
2059 2256 2.034687 AGGTGTGCTGGCATGACC 59.965 61.111 14.86 14.86 39.84 4.02
2060 2257 3.271014 CAGGTGTGCTGGCATGAC 58.729 61.111 0.00 0.00 0.00 3.06
2070 2267 1.240641 TTTGTATGCCGGCAGGTGTG 61.241 55.000 35.36 0.00 40.50 3.82
2071 2268 0.538516 TTTTGTATGCCGGCAGGTGT 60.539 50.000 35.36 20.64 40.50 4.16
2072 2269 0.600557 TTTTTGTATGCCGGCAGGTG 59.399 50.000 35.36 0.00 40.50 4.00
2073 2270 3.043998 TTTTTGTATGCCGGCAGGT 57.956 47.368 35.36 21.86 40.50 4.00
2100 2297 2.279517 GTGGTCTATGGCGGCGAG 60.280 66.667 12.98 4.23 0.00 5.03
2101 2298 2.758327 AGTGGTCTATGGCGGCGA 60.758 61.111 12.98 0.00 0.00 5.54
2102 2299 2.279517 GAGTGGTCTATGGCGGCG 60.280 66.667 0.51 0.51 0.00 6.46
2103 2300 2.279517 CGAGTGGTCTATGGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
2104 2301 1.065928 GACGAGTGGTCTATGGCGG 59.934 63.158 0.00 0.00 42.62 6.13
2105 2302 1.298413 CGACGAGTGGTCTATGGCG 60.298 63.158 3.67 0.00 43.79 5.69
2106 2303 0.248539 GACGACGAGTGGTCTATGGC 60.249 60.000 0.00 0.00 43.79 4.40
2107 2304 0.027716 CGACGACGAGTGGTCTATGG 59.972 60.000 14.60 0.00 43.79 2.74
2108 2305 1.004595 TCGACGACGAGTGGTCTATG 58.995 55.000 5.75 2.24 43.79 2.23
2109 2306 3.448267 TCGACGACGAGTGGTCTAT 57.552 52.632 5.75 0.00 43.79 1.98
2110 2307 4.994744 TCGACGACGAGTGGTCTA 57.005 55.556 5.75 3.21 43.79 2.59
2119 2316 2.839026 GACATACTCAAGTTCGACGACG 59.161 50.000 0.00 0.00 41.26 5.12
2120 2317 2.839026 CGACATACTCAAGTTCGACGAC 59.161 50.000 0.00 0.00 29.99 4.34
2121 2318 2.159612 CCGACATACTCAAGTTCGACGA 60.160 50.000 0.00 0.00 29.99 4.20
2122 2319 2.174764 CCGACATACTCAAGTTCGACG 58.825 52.381 4.70 0.00 29.99 5.12
2123 2320 1.918609 GCCGACATACTCAAGTTCGAC 59.081 52.381 4.70 0.00 29.99 4.20
2124 2321 1.135199 GGCCGACATACTCAAGTTCGA 60.135 52.381 4.70 0.00 29.99 3.71
2125 2322 1.135083 AGGCCGACATACTCAAGTTCG 60.135 52.381 0.00 0.00 0.00 3.95
2126 2323 2.271800 CAGGCCGACATACTCAAGTTC 58.728 52.381 0.00 0.00 0.00 3.01
2127 2324 1.676014 GCAGGCCGACATACTCAAGTT 60.676 52.381 0.00 0.00 0.00 2.66
2128 2325 0.108138 GCAGGCCGACATACTCAAGT 60.108 55.000 0.00 0.00 0.00 3.16
2129 2326 0.108186 TGCAGGCCGACATACTCAAG 60.108 55.000 0.00 0.00 0.00 3.02
2130 2327 0.541392 ATGCAGGCCGACATACTCAA 59.459 50.000 11.38 0.00 0.00 3.02
2131 2328 0.104855 GATGCAGGCCGACATACTCA 59.895 55.000 12.83 0.00 0.00 3.41
2132 2329 0.390860 AGATGCAGGCCGACATACTC 59.609 55.000 12.83 3.30 0.00 2.59
2133 2330 0.833287 AAGATGCAGGCCGACATACT 59.167 50.000 12.83 9.41 0.00 2.12
2134 2331 1.202580 AGAAGATGCAGGCCGACATAC 60.203 52.381 12.83 8.31 0.00 2.39
2135 2332 1.069204 GAGAAGATGCAGGCCGACATA 59.931 52.381 12.83 0.00 0.00 2.29
2136 2333 0.179062 GAGAAGATGCAGGCCGACAT 60.179 55.000 12.73 12.73 0.00 3.06
2137 2334 1.219124 GAGAAGATGCAGGCCGACA 59.781 57.895 0.00 0.00 0.00 4.35
2138 2335 1.880340 CGAGAAGATGCAGGCCGAC 60.880 63.158 0.00 0.00 0.00 4.79
2139 2336 1.604147 TTCGAGAAGATGCAGGCCGA 61.604 55.000 0.00 0.00 0.00 5.54
2140 2337 1.153568 TTCGAGAAGATGCAGGCCG 60.154 57.895 0.00 0.00 0.00 6.13
2141 2338 1.092345 GGTTCGAGAAGATGCAGGCC 61.092 60.000 0.00 0.00 0.00 5.19
2142 2339 0.391661 TGGTTCGAGAAGATGCAGGC 60.392 55.000 0.00 0.00 0.00 4.85
2143 2340 1.363744 GTGGTTCGAGAAGATGCAGG 58.636 55.000 0.00 0.00 0.00 4.85
2144 2341 0.994995 CGTGGTTCGAGAAGATGCAG 59.005 55.000 0.00 0.00 42.86 4.41
2145 2342 0.601057 TCGTGGTTCGAGAAGATGCA 59.399 50.000 0.00 0.00 44.01 3.96
2146 2343 3.418675 TCGTGGTTCGAGAAGATGC 57.581 52.632 0.00 0.00 44.01 3.91
2154 2351 0.538977 AGGAAGAGGTCGTGGTTCGA 60.539 55.000 0.00 0.00 46.83 3.71
2155 2352 0.317479 AAGGAAGAGGTCGTGGTTCG 59.683 55.000 0.00 0.00 41.41 3.95
2156 2353 1.608283 CCAAGGAAGAGGTCGTGGTTC 60.608 57.143 0.00 0.00 30.71 3.62
2157 2354 0.396811 CCAAGGAAGAGGTCGTGGTT 59.603 55.000 0.00 0.00 30.71 3.67
2158 2355 0.471211 TCCAAGGAAGAGGTCGTGGT 60.471 55.000 0.00 0.00 34.89 4.16
2159 2356 0.247736 CTCCAAGGAAGAGGTCGTGG 59.752 60.000 0.00 0.00 34.70 4.94
2160 2357 1.067495 GTCTCCAAGGAAGAGGTCGTG 60.067 57.143 0.00 0.00 31.96 4.35
2161 2358 1.258676 GTCTCCAAGGAAGAGGTCGT 58.741 55.000 0.00 0.00 31.96 4.34
2162 2359 1.067495 GTGTCTCCAAGGAAGAGGTCG 60.067 57.143 0.00 0.00 31.96 4.79
2163 2360 1.067495 CGTGTCTCCAAGGAAGAGGTC 60.067 57.143 0.00 0.00 31.96 3.85
2164 2361 0.969894 CGTGTCTCCAAGGAAGAGGT 59.030 55.000 0.00 0.00 31.96 3.85
2165 2362 0.247736 CCGTGTCTCCAAGGAAGAGG 59.752 60.000 0.00 0.00 42.22 3.69
2166 2363 0.969894 ACCGTGTCTCCAAGGAAGAG 59.030 55.000 1.67 0.00 42.22 2.85
2167 2364 0.679505 CACCGTGTCTCCAAGGAAGA 59.320 55.000 1.67 0.00 42.22 2.87
2168 2365 0.393077 ACACCGTGTCTCCAAGGAAG 59.607 55.000 0.00 0.00 42.22 3.46
2169 2366 0.834612 AACACCGTGTCTCCAAGGAA 59.165 50.000 4.23 0.00 42.22 3.36
2170 2367 0.105964 CAACACCGTGTCTCCAAGGA 59.894 55.000 4.23 0.00 42.22 3.36
2171 2368 0.105964 TCAACACCGTGTCTCCAAGG 59.894 55.000 4.23 0.00 44.80 3.61
2172 2369 1.068588 TCTCAACACCGTGTCTCCAAG 59.931 52.381 4.23 0.00 0.00 3.61
2173 2370 1.116308 TCTCAACACCGTGTCTCCAA 58.884 50.000 4.23 0.00 0.00 3.53
2174 2371 1.272490 GATCTCAACACCGTGTCTCCA 59.728 52.381 4.23 0.00 0.00 3.86
2175 2372 1.404315 GGATCTCAACACCGTGTCTCC 60.404 57.143 4.23 3.49 0.00 3.71
2176 2373 1.272490 TGGATCTCAACACCGTGTCTC 59.728 52.381 4.23 0.00 0.00 3.36
2177 2374 1.000955 GTGGATCTCAACACCGTGTCT 59.999 52.381 4.23 0.00 0.00 3.41
2178 2375 1.429463 GTGGATCTCAACACCGTGTC 58.571 55.000 4.23 0.00 0.00 3.67
2179 2376 0.034896 GGTGGATCTCAACACCGTGT 59.965 55.000 0.00 0.00 46.61 4.49
2180 2377 2.840974 GGTGGATCTCAACACCGTG 58.159 57.895 3.49 0.00 46.61 4.94
2184 2381 3.942829 TCATGAAGGTGGATCTCAACAC 58.057 45.455 0.00 0.00 34.94 3.32
2185 2382 4.472470 AGATCATGAAGGTGGATCTCAACA 59.528 41.667 0.00 0.00 43.06 3.33
2186 2383 5.033589 AGATCATGAAGGTGGATCTCAAC 57.966 43.478 0.00 0.00 43.06 3.18
2191 2388 3.495806 GGTGGAGATCATGAAGGTGGATC 60.496 52.174 0.00 0.00 38.13 3.36
2192 2389 2.441001 GGTGGAGATCATGAAGGTGGAT 59.559 50.000 0.00 0.00 0.00 3.41
2193 2390 1.839994 GGTGGAGATCATGAAGGTGGA 59.160 52.381 0.00 0.00 0.00 4.02
2194 2391 1.133976 GGGTGGAGATCATGAAGGTGG 60.134 57.143 0.00 0.00 0.00 4.61
2195 2392 1.133976 GGGGTGGAGATCATGAAGGTG 60.134 57.143 0.00 0.00 0.00 4.00
2196 2393 1.216990 GGGGTGGAGATCATGAAGGT 58.783 55.000 0.00 0.00 0.00 3.50
2197 2394 0.107456 CGGGGTGGAGATCATGAAGG 59.893 60.000 0.00 0.00 0.00 3.46
2198 2395 0.107456 CCGGGGTGGAGATCATGAAG 59.893 60.000 0.00 0.00 42.00 3.02
2199 2396 0.620410 ACCGGGGTGGAGATCATGAA 60.620 55.000 6.32 0.00 42.00 2.57
2200 2397 1.002921 ACCGGGGTGGAGATCATGA 59.997 57.895 6.32 0.00 42.00 3.07
2201 2398 1.337384 TGACCGGGGTGGAGATCATG 61.337 60.000 6.32 0.00 42.00 3.07
2202 2399 0.400525 ATGACCGGGGTGGAGATCAT 60.401 55.000 6.32 0.00 42.00 2.45
2203 2400 1.002921 ATGACCGGGGTGGAGATCA 59.997 57.895 6.32 0.00 42.00 2.92
2204 2401 1.048724 TGATGACCGGGGTGGAGATC 61.049 60.000 6.32 0.00 42.00 2.75
2205 2402 0.400525 ATGATGACCGGGGTGGAGAT 60.401 55.000 6.32 0.00 42.00 2.75
2206 2403 1.002921 ATGATGACCGGGGTGGAGA 59.997 57.895 6.32 0.00 42.00 3.71
2207 2404 1.146930 CATGATGACCGGGGTGGAG 59.853 63.158 6.32 0.00 42.00 3.86
2208 2405 3.042733 GCATGATGACCGGGGTGGA 62.043 63.158 6.32 0.00 42.00 4.02
2209 2406 2.516930 GCATGATGACCGGGGTGG 60.517 66.667 6.32 0.00 46.41 4.61
2210 2407 1.524621 GAGCATGATGACCGGGGTG 60.525 63.158 6.32 0.00 0.00 4.61
2211 2408 2.911143 GAGCATGATGACCGGGGT 59.089 61.111 6.32 0.00 0.00 4.95
2212 2409 2.280389 CGAGCATGATGACCGGGG 60.280 66.667 6.32 0.00 0.00 5.73
2213 2410 2.969238 GCGAGCATGATGACCGGG 60.969 66.667 6.32 0.00 0.00 5.73
2214 2411 3.333189 CGCGAGCATGATGACCGG 61.333 66.667 0.00 0.00 0.00 5.28
2215 2412 2.278792 TCGCGAGCATGATGACCG 60.279 61.111 3.71 0.00 0.00 4.79
2216 2413 0.938637 CTCTCGCGAGCATGATGACC 60.939 60.000 30.97 0.00 0.00 4.02
2217 2414 2.504351 CTCTCGCGAGCATGATGAC 58.496 57.895 30.97 0.00 0.00 3.06
2226 2423 0.389166 AAAGAAGTGGCTCTCGCGAG 60.389 55.000 30.03 30.03 40.35 5.03
2227 2424 0.388649 GAAAGAAGTGGCTCTCGCGA 60.389 55.000 9.26 9.26 36.88 5.87
2228 2425 1.678269 CGAAAGAAGTGGCTCTCGCG 61.678 60.000 0.00 0.00 36.88 5.87
2229 2426 1.960994 GCGAAAGAAGTGGCTCTCGC 61.961 60.000 0.00 0.00 33.35 5.03
2230 2427 1.355066 GGCGAAAGAAGTGGCTCTCG 61.355 60.000 0.00 0.00 0.00 4.04
2231 2428 0.036858 AGGCGAAAGAAGTGGCTCTC 60.037 55.000 0.00 0.00 32.43 3.20
2232 2429 0.398318 AAGGCGAAAGAAGTGGCTCT 59.602 50.000 0.00 0.00 37.56 4.09
2233 2430 0.519077 CAAGGCGAAAGAAGTGGCTC 59.481 55.000 0.00 0.00 37.56 4.70
2234 2431 0.890996 CCAAGGCGAAAGAAGTGGCT 60.891 55.000 0.00 0.00 40.62 4.75
2235 2432 1.172812 ACCAAGGCGAAAGAAGTGGC 61.173 55.000 0.00 0.00 31.96 5.01
2236 2433 0.875059 GACCAAGGCGAAAGAAGTGG 59.125 55.000 0.00 0.00 34.11 4.00
2237 2434 1.884235 AGACCAAGGCGAAAGAAGTG 58.116 50.000 0.00 0.00 0.00 3.16
2238 2435 2.222027 CAAGACCAAGGCGAAAGAAGT 58.778 47.619 0.00 0.00 0.00 3.01
2239 2436 1.537202 CCAAGACCAAGGCGAAAGAAG 59.463 52.381 0.00 0.00 0.00 2.85
2240 2437 1.604604 CCAAGACCAAGGCGAAAGAA 58.395 50.000 0.00 0.00 0.00 2.52
2241 2438 0.889186 GCCAAGACCAAGGCGAAAGA 60.889 55.000 0.00 0.00 41.70 2.52
2242 2439 1.581447 GCCAAGACCAAGGCGAAAG 59.419 57.895 0.00 0.00 41.70 2.62
2243 2440 3.758172 GCCAAGACCAAGGCGAAA 58.242 55.556 0.00 0.00 41.70 3.46
2248 2445 2.919494 GCCAACGCCAAGACCAAGG 61.919 63.158 0.00 0.00 0.00 3.61
2249 2446 2.644992 GCCAACGCCAAGACCAAG 59.355 61.111 0.00 0.00 0.00 3.61
2250 2447 3.283684 CGCCAACGCCAAGACCAA 61.284 61.111 0.00 0.00 0.00 3.67
2260 2457 4.514577 AGATCGAGGCCGCCAACG 62.515 66.667 13.15 16.49 39.67 4.10
2261 2458 1.735376 TAGAGATCGAGGCCGCCAAC 61.735 60.000 13.15 4.32 35.37 3.77
2262 2459 1.455032 TAGAGATCGAGGCCGCCAA 60.455 57.895 13.15 0.00 35.37 4.52
2263 2460 1.899054 CTAGAGATCGAGGCCGCCA 60.899 63.158 13.15 0.00 35.37 5.69
2264 2461 2.958576 CTAGAGATCGAGGCCGCC 59.041 66.667 0.00 0.00 35.37 6.13
2265 2462 1.872197 ATGCTAGAGATCGAGGCCGC 61.872 60.000 0.00 0.00 35.37 6.53
2266 2463 0.170116 GATGCTAGAGATCGAGGCCG 59.830 60.000 0.00 0.00 37.07 6.13
2267 2464 1.544724 AGATGCTAGAGATCGAGGCC 58.455 55.000 0.00 0.00 0.00 5.19
2268 2465 2.352617 CCAAGATGCTAGAGATCGAGGC 60.353 54.545 0.00 0.00 0.00 4.70
2269 2466 2.352617 GCCAAGATGCTAGAGATCGAGG 60.353 54.545 0.00 3.21 0.00 4.63
2270 2467 2.557924 AGCCAAGATGCTAGAGATCGAG 59.442 50.000 0.00 0.00 40.56 4.04
2271 2468 2.591923 AGCCAAGATGCTAGAGATCGA 58.408 47.619 0.00 0.00 40.56 3.59
2272 2469 3.058450 CAAGCCAAGATGCTAGAGATCG 58.942 50.000 0.00 0.00 41.80 3.69
2273 2470 2.807392 GCAAGCCAAGATGCTAGAGATC 59.193 50.000 0.00 0.00 41.80 2.75
2274 2471 2.848691 GCAAGCCAAGATGCTAGAGAT 58.151 47.619 0.00 0.00 41.80 2.75
2275 2472 2.322355 GCAAGCCAAGATGCTAGAGA 57.678 50.000 0.00 0.00 41.80 3.10
2281 2478 0.455005 GGAGAAGCAAGCCAAGATGC 59.545 55.000 0.00 0.00 42.87 3.91
2282 2479 0.731417 CGGAGAAGCAAGCCAAGATG 59.269 55.000 0.00 0.00 0.00 2.90
2283 2480 1.028868 GCGGAGAAGCAAGCCAAGAT 61.029 55.000 0.00 0.00 37.05 2.40
2284 2481 1.672356 GCGGAGAAGCAAGCCAAGA 60.672 57.895 0.00 0.00 37.05 3.02
2285 2482 2.873288 GCGGAGAAGCAAGCCAAG 59.127 61.111 0.00 0.00 37.05 3.61
2289 2486 2.821810 GGAGGCGGAGAAGCAAGC 60.822 66.667 0.00 0.00 39.27 4.01
2290 2487 1.449246 CTGGAGGCGGAGAAGCAAG 60.449 63.158 0.00 0.00 39.27 4.01
2291 2488 2.665000 CTGGAGGCGGAGAAGCAA 59.335 61.111 0.00 0.00 39.27 3.91
2292 2489 4.087892 GCTGGAGGCGGAGAAGCA 62.088 66.667 0.00 0.00 39.27 3.91
2301 2498 0.107945 AAGATGTTCGAGCTGGAGGC 60.108 55.000 0.00 0.00 42.19 4.70
2302 2499 1.649664 CAAGATGTTCGAGCTGGAGG 58.350 55.000 0.00 0.00 0.00 4.30
2303 2500 1.649664 CCAAGATGTTCGAGCTGGAG 58.350 55.000 0.00 0.00 0.00 3.86
2304 2501 0.391661 GCCAAGATGTTCGAGCTGGA 60.392 55.000 9.09 0.00 0.00 3.86
2305 2502 2.093216 GCCAAGATGTTCGAGCTGG 58.907 57.895 0.00 0.72 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.