Multiple sequence alignment - TraesCS2D01G467100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467100 chr2D 100.000 2505 0 0 1 2505 572334311 572336815 0.000000e+00 4626.0
1 TraesCS2D01G467100 chr2B 89.653 1759 111 36 428 2143 687247562 687249292 0.000000e+00 2174.0
2 TraesCS2D01G467100 chr2B 93.966 116 4 1 2390 2505 687251275 687251387 3.310000e-39 172.0
3 TraesCS2D01G467100 chr2B 94.949 99 3 1 2285 2383 687249354 687249450 1.200000e-33 154.0
4 TraesCS2D01G467100 chr2B 94.030 67 4 0 2168 2234 687249291 687249357 4.410000e-18 102.0
5 TraesCS2D01G467100 chr2A 88.082 1569 93 43 408 1896 711541236 711542790 0.000000e+00 1775.0
6 TraesCS2D01G467100 chr2A 89.423 208 18 2 1934 2140 711542983 711543187 2.470000e-65 259.0
7 TraesCS2D01G467100 chr2A 94.845 97 3 2 325 419 711540801 711540897 1.550000e-32 150.0
8 TraesCS2D01G467100 chr1B 96.078 51 2 0 2234 2284 613911823 613911773 1.600000e-12 84.2
9 TraesCS2D01G467100 chr7B 94.118 51 3 0 2234 2284 102758723 102758673 7.430000e-11 78.7
10 TraesCS2D01G467100 chr6B 94.118 51 3 0 2234 2284 623360560 623360510 7.430000e-11 78.7
11 TraesCS2D01G467100 chr7A 92.308 52 4 0 2234 2285 440696888 440696939 9.610000e-10 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467100 chr2D 572334311 572336815 2504 False 4626.0 4626 100.000000 1 2505 1 chr2D.!!$F1 2504
1 TraesCS2D01G467100 chr2B 687247562 687251387 3825 False 650.5 2174 93.149500 428 2505 4 chr2B.!!$F1 2077
2 TraesCS2D01G467100 chr2A 711540801 711543187 2386 False 728.0 1775 90.783333 325 2140 3 chr2A.!!$F1 1815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.038892 TCAACCACGCGAAGAGTACC 60.039 55.0 15.93 0.0 39.58 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2711 0.18135 ATTTCTCTCACCCGATGCCC 59.819 55.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.751767 AAAAAGCCAGTGAAAACCATGA 57.248 36.364 0.00 0.00 0.00 3.07
53 54 4.751767 AAAAGCCAGTGAAAACCATGAA 57.248 36.364 0.00 0.00 0.00 2.57
54 55 4.751767 AAAGCCAGTGAAAACCATGAAA 57.248 36.364 0.00 0.00 0.00 2.69
55 56 4.326504 AAGCCAGTGAAAACCATGAAAG 57.673 40.909 0.00 0.00 0.00 2.62
56 57 3.565307 AGCCAGTGAAAACCATGAAAGA 58.435 40.909 0.00 0.00 0.00 2.52
57 58 3.960102 AGCCAGTGAAAACCATGAAAGAA 59.040 39.130 0.00 0.00 0.00 2.52
58 59 4.405358 AGCCAGTGAAAACCATGAAAGAAA 59.595 37.500 0.00 0.00 0.00 2.52
59 60 4.507756 GCCAGTGAAAACCATGAAAGAAAC 59.492 41.667 0.00 0.00 0.00 2.78
60 61 4.739716 CCAGTGAAAACCATGAAAGAAACG 59.260 41.667 0.00 0.00 0.00 3.60
61 62 5.449862 CCAGTGAAAACCATGAAAGAAACGA 60.450 40.000 0.00 0.00 0.00 3.85
62 63 5.455525 CAGTGAAAACCATGAAAGAAACGAC 59.544 40.000 0.00 0.00 0.00 4.34
63 64 4.436523 GTGAAAACCATGAAAGAAACGACG 59.563 41.667 0.00 0.00 0.00 5.12
64 65 4.333095 TGAAAACCATGAAAGAAACGACGA 59.667 37.500 0.00 0.00 0.00 4.20
65 66 4.886247 AAACCATGAAAGAAACGACGAA 57.114 36.364 0.00 0.00 0.00 3.85
66 67 4.886247 AACCATGAAAGAAACGACGAAA 57.114 36.364 0.00 0.00 0.00 3.46
67 68 4.886247 ACCATGAAAGAAACGACGAAAA 57.114 36.364 0.00 0.00 0.00 2.29
68 69 4.594136 ACCATGAAAGAAACGACGAAAAC 58.406 39.130 0.00 0.00 0.00 2.43
69 70 3.972502 CCATGAAAGAAACGACGAAAACC 59.027 43.478 0.00 0.00 0.00 3.27
70 71 3.307339 TGAAAGAAACGACGAAAACCG 57.693 42.857 0.00 0.00 45.44 4.44
71 72 2.030701 TGAAAGAAACGACGAAAACCGG 59.969 45.455 0.00 0.00 43.93 5.28
72 73 1.655484 AAGAAACGACGAAAACCGGT 58.345 45.000 0.00 0.00 43.93 5.28
73 74 0.932399 AGAAACGACGAAAACCGGTG 59.068 50.000 8.52 0.00 43.93 4.94
74 75 0.929615 GAAACGACGAAAACCGGTGA 59.070 50.000 8.52 0.00 43.93 4.02
75 76 1.327156 GAAACGACGAAAACCGGTGAA 59.673 47.619 8.52 0.00 43.93 3.18
76 77 1.585297 AACGACGAAAACCGGTGAAT 58.415 45.000 8.52 0.00 43.93 2.57
77 78 1.585297 ACGACGAAAACCGGTGAATT 58.415 45.000 8.52 3.61 43.93 2.17
78 79 1.941975 ACGACGAAAACCGGTGAATTT 59.058 42.857 8.52 4.83 43.93 1.82
79 80 2.355444 ACGACGAAAACCGGTGAATTTT 59.645 40.909 8.52 4.37 43.93 1.82
80 81 3.181498 ACGACGAAAACCGGTGAATTTTT 60.181 39.130 8.52 3.90 43.93 1.94
81 82 3.178814 CGACGAAAACCGGTGAATTTTTG 59.821 43.478 8.52 11.57 43.93 2.44
82 83 4.106909 GACGAAAACCGGTGAATTTTTGT 58.893 39.130 18.24 18.24 42.49 2.83
83 84 4.496360 ACGAAAACCGGTGAATTTTTGTT 58.504 34.783 8.52 0.00 38.64 2.83
84 85 4.327627 ACGAAAACCGGTGAATTTTTGTTG 59.672 37.500 8.52 0.00 38.64 3.33
85 86 4.327627 CGAAAACCGGTGAATTTTTGTTGT 59.672 37.500 8.52 0.00 33.91 3.32
86 87 5.163943 CGAAAACCGGTGAATTTTTGTTGTT 60.164 36.000 8.52 0.00 33.91 2.83
87 88 5.538067 AAACCGGTGAATTTTTGTTGTTG 57.462 34.783 8.52 0.00 0.00 3.33
88 89 3.526534 ACCGGTGAATTTTTGTTGTTGG 58.473 40.909 6.12 0.00 0.00 3.77
89 90 3.195825 ACCGGTGAATTTTTGTTGTTGGA 59.804 39.130 6.12 0.00 0.00 3.53
90 91 4.184629 CCGGTGAATTTTTGTTGTTGGAA 58.815 39.130 0.00 0.00 0.00 3.53
91 92 4.631813 CCGGTGAATTTTTGTTGTTGGAAA 59.368 37.500 0.00 0.00 0.00 3.13
92 93 5.122396 CCGGTGAATTTTTGTTGTTGGAAAA 59.878 36.000 0.00 0.00 0.00 2.29
93 94 6.348540 CCGGTGAATTTTTGTTGTTGGAAAAA 60.349 34.615 0.00 0.00 35.95 1.94
94 95 6.521477 CGGTGAATTTTTGTTGTTGGAAAAAC 59.479 34.615 0.00 0.00 34.70 2.43
95 96 7.572168 CGGTGAATTTTTGTTGTTGGAAAAACT 60.572 33.333 0.00 0.00 34.70 2.66
96 97 7.536964 GGTGAATTTTTGTTGTTGGAAAAACTG 59.463 33.333 0.00 0.00 34.70 3.16
97 98 8.286097 GTGAATTTTTGTTGTTGGAAAAACTGA 58.714 29.630 0.00 0.00 34.70 3.41
98 99 9.007901 TGAATTTTTGTTGTTGGAAAAACTGAT 57.992 25.926 0.00 0.00 34.70 2.90
103 104 9.712305 TTTTGTTGTTGGAAAAACTGATAAAGA 57.288 25.926 0.00 0.00 0.00 2.52
104 105 9.712305 TTTGTTGTTGGAAAAACTGATAAAGAA 57.288 25.926 0.00 0.00 0.00 2.52
105 106 9.712305 TTGTTGTTGGAAAAACTGATAAAGAAA 57.288 25.926 0.00 0.00 0.00 2.52
106 107 9.145865 TGTTGTTGGAAAAACTGATAAAGAAAC 57.854 29.630 0.00 0.00 0.00 2.78
107 108 7.979115 TGTTGGAAAAACTGATAAAGAAACG 57.021 32.000 0.00 0.00 0.00 3.60
108 109 6.975772 TGTTGGAAAAACTGATAAAGAAACGG 59.024 34.615 0.00 0.00 0.00 4.44
109 110 6.945938 TGGAAAAACTGATAAAGAAACGGA 57.054 33.333 0.00 0.00 0.00 4.69
110 111 6.966021 TGGAAAAACTGATAAAGAAACGGAG 58.034 36.000 0.00 0.00 0.00 4.63
111 112 6.768861 TGGAAAAACTGATAAAGAAACGGAGA 59.231 34.615 0.00 0.00 0.00 3.71
112 113 7.283580 TGGAAAAACTGATAAAGAAACGGAGAA 59.716 33.333 0.00 0.00 0.00 2.87
113 114 8.132995 GGAAAAACTGATAAAGAAACGGAGAAA 58.867 33.333 0.00 0.00 0.00 2.52
114 115 9.511144 GAAAAACTGATAAAGAAACGGAGAAAA 57.489 29.630 0.00 0.00 0.00 2.29
115 116 8.851960 AAAACTGATAAAGAAACGGAGAAAAC 57.148 30.769 0.00 0.00 0.00 2.43
116 117 7.562454 AACTGATAAAGAAACGGAGAAAACA 57.438 32.000 0.00 0.00 0.00 2.83
117 118 7.190920 ACTGATAAAGAAACGGAGAAAACAG 57.809 36.000 0.00 0.00 0.00 3.16
118 119 6.990349 ACTGATAAAGAAACGGAGAAAACAGA 59.010 34.615 0.00 0.00 0.00 3.41
119 120 7.497909 ACTGATAAAGAAACGGAGAAAACAGAA 59.502 33.333 0.00 0.00 0.00 3.02
120 121 8.215926 TGATAAAGAAACGGAGAAAACAGAAA 57.784 30.769 0.00 0.00 0.00 2.52
121 122 8.342634 TGATAAAGAAACGGAGAAAACAGAAAG 58.657 33.333 0.00 0.00 0.00 2.62
122 123 6.753107 AAAGAAACGGAGAAAACAGAAAGA 57.247 33.333 0.00 0.00 0.00 2.52
123 124 6.753107 AAGAAACGGAGAAAACAGAAAGAA 57.247 33.333 0.00 0.00 0.00 2.52
124 125 6.753107 AGAAACGGAGAAAACAGAAAGAAA 57.247 33.333 0.00 0.00 0.00 2.52
125 126 6.786207 AGAAACGGAGAAAACAGAAAGAAAG 58.214 36.000 0.00 0.00 0.00 2.62
126 127 6.598064 AGAAACGGAGAAAACAGAAAGAAAGA 59.402 34.615 0.00 0.00 0.00 2.52
127 128 6.944234 AACGGAGAAAACAGAAAGAAAGAT 57.056 33.333 0.00 0.00 0.00 2.40
128 129 8.446599 AAACGGAGAAAACAGAAAGAAAGATA 57.553 30.769 0.00 0.00 0.00 1.98
129 130 8.446599 AACGGAGAAAACAGAAAGAAAGATAA 57.553 30.769 0.00 0.00 0.00 1.75
130 131 8.446599 ACGGAGAAAACAGAAAGAAAGATAAA 57.553 30.769 0.00 0.00 0.00 1.40
131 132 8.899771 ACGGAGAAAACAGAAAGAAAGATAAAA 58.100 29.630 0.00 0.00 0.00 1.52
132 133 9.730420 CGGAGAAAACAGAAAGAAAGATAAAAA 57.270 29.630 0.00 0.00 0.00 1.94
167 168 5.638596 AAAACCGGATAAATCTGTCAACC 57.361 39.130 9.46 0.00 0.00 3.77
168 169 3.992943 ACCGGATAAATCTGTCAACCA 57.007 42.857 9.46 0.00 0.00 3.67
169 170 3.606687 ACCGGATAAATCTGTCAACCAC 58.393 45.455 9.46 0.00 0.00 4.16
170 171 2.607635 CCGGATAAATCTGTCAACCACG 59.392 50.000 0.00 0.00 0.00 4.94
171 172 2.030457 CGGATAAATCTGTCAACCACGC 59.970 50.000 0.00 0.00 0.00 5.34
172 173 2.030457 GGATAAATCTGTCAACCACGCG 59.970 50.000 3.53 3.53 0.00 6.01
173 174 2.442212 TAAATCTGTCAACCACGCGA 57.558 45.000 15.93 0.00 0.00 5.87
174 175 1.588674 AAATCTGTCAACCACGCGAA 58.411 45.000 15.93 0.00 0.00 4.70
175 176 1.148310 AATCTGTCAACCACGCGAAG 58.852 50.000 15.93 5.72 0.00 3.79
176 177 0.317160 ATCTGTCAACCACGCGAAGA 59.683 50.000 15.93 0.00 0.00 2.87
177 178 0.318699 TCTGTCAACCACGCGAAGAG 60.319 55.000 15.93 0.00 0.00 2.85
178 179 0.597637 CTGTCAACCACGCGAAGAGT 60.598 55.000 15.93 0.37 45.01 3.24
179 180 0.669619 TGTCAACCACGCGAAGAGTA 59.330 50.000 15.93 0.00 39.58 2.59
180 181 1.058404 GTCAACCACGCGAAGAGTAC 58.942 55.000 15.93 0.00 39.58 2.73
181 182 0.038892 TCAACCACGCGAAGAGTACC 60.039 55.000 15.93 0.00 39.58 3.34
182 183 1.080974 AACCACGCGAAGAGTACCG 60.081 57.895 15.93 0.00 39.58 4.02
183 184 2.202570 CCACGCGAAGAGTACCGG 60.203 66.667 15.93 0.00 39.58 5.28
184 185 2.879462 CACGCGAAGAGTACCGGC 60.879 66.667 15.93 0.00 39.58 6.13
185 186 3.367743 ACGCGAAGAGTACCGGCA 61.368 61.111 15.93 0.00 39.99 5.69
186 187 2.126228 CGCGAAGAGTACCGGCAA 60.126 61.111 0.00 0.00 0.00 4.52
187 188 2.442188 CGCGAAGAGTACCGGCAAC 61.442 63.158 0.00 0.00 0.00 4.17
211 212 2.392933 GAACATTGCCGTTGTTCGAA 57.607 45.000 0.00 0.00 42.35 3.71
212 213 2.722071 GAACATTGCCGTTGTTCGAAA 58.278 42.857 0.00 0.00 42.35 3.46
213 214 2.853731 ACATTGCCGTTGTTCGAAAA 57.146 40.000 0.00 0.00 42.86 2.29
214 215 3.152261 ACATTGCCGTTGTTCGAAAAA 57.848 38.095 0.00 0.00 42.86 1.94
233 234 4.450082 AAAATAATCAAACAGGCCGTCC 57.550 40.909 0.00 0.00 0.00 4.79
234 235 2.052782 ATAATCAAACAGGCCGTCCC 57.947 50.000 0.00 0.00 0.00 4.46
235 236 0.693622 TAATCAAACAGGCCGTCCCA 59.306 50.000 0.00 0.00 35.39 4.37
236 237 0.609131 AATCAAACAGGCCGTCCCAG 60.609 55.000 0.00 0.00 35.39 4.45
237 238 1.779061 ATCAAACAGGCCGTCCCAGT 61.779 55.000 0.00 0.00 34.32 4.00
238 239 1.528309 CAAACAGGCCGTCCCAGTT 60.528 57.895 0.00 0.00 44.32 3.16
239 240 0.250553 CAAACAGGCCGTCCCAGTTA 60.251 55.000 0.00 0.00 41.91 2.24
240 241 0.250597 AAACAGGCCGTCCCAGTTAC 60.251 55.000 0.00 0.00 41.91 2.50
241 242 1.412453 AACAGGCCGTCCCAGTTACA 61.412 55.000 0.00 0.00 41.06 2.41
242 243 1.373435 CAGGCCGTCCCAGTTACAA 59.627 57.895 0.00 0.00 35.39 2.41
243 244 0.953960 CAGGCCGTCCCAGTTACAAC 60.954 60.000 0.00 0.00 35.39 3.32
244 245 1.673337 GGCCGTCCCAGTTACAACC 60.673 63.158 0.00 0.00 0.00 3.77
245 246 2.030958 GCCGTCCCAGTTACAACCG 61.031 63.158 0.00 0.00 0.00 4.44
246 247 1.375013 CCGTCCCAGTTACAACCGG 60.375 63.158 0.00 0.00 0.00 5.28
247 248 1.375013 CGTCCCAGTTACAACCGGG 60.375 63.158 6.32 7.02 46.14 5.73
248 249 1.002990 GTCCCAGTTACAACCGGGG 60.003 63.158 6.32 11.93 45.08 5.73
249 250 2.225596 TCCCAGTTACAACCGGGGG 61.226 63.158 6.32 3.72 45.08 5.40
250 251 2.225596 CCCAGTTACAACCGGGGGA 61.226 63.158 6.32 0.00 41.96 4.81
251 252 1.298667 CCAGTTACAACCGGGGGAG 59.701 63.158 6.32 0.00 0.00 4.30
252 253 1.196104 CCAGTTACAACCGGGGGAGA 61.196 60.000 6.32 0.00 0.00 3.71
253 254 0.688487 CAGTTACAACCGGGGGAGAA 59.312 55.000 6.32 0.00 0.00 2.87
254 255 1.072648 CAGTTACAACCGGGGGAGAAA 59.927 52.381 6.32 0.00 0.00 2.52
255 256 1.776063 AGTTACAACCGGGGGAGAAAA 59.224 47.619 6.32 0.00 0.00 2.29
256 257 2.175284 AGTTACAACCGGGGGAGAAAAA 59.825 45.455 6.32 0.00 0.00 1.94
257 258 3.159472 GTTACAACCGGGGGAGAAAAAT 58.841 45.455 6.32 0.00 0.00 1.82
258 259 1.919240 ACAACCGGGGGAGAAAAATC 58.081 50.000 6.32 0.00 0.00 2.17
259 260 1.427753 ACAACCGGGGGAGAAAAATCT 59.572 47.619 6.32 0.00 0.00 2.40
260 261 2.158370 ACAACCGGGGGAGAAAAATCTT 60.158 45.455 6.32 0.00 0.00 2.40
261 262 2.492088 CAACCGGGGGAGAAAAATCTTC 59.508 50.000 6.32 0.00 0.00 2.87
262 263 1.708551 ACCGGGGGAGAAAAATCTTCA 59.291 47.619 6.32 0.00 0.00 3.02
263 264 2.109304 ACCGGGGGAGAAAAATCTTCAA 59.891 45.455 6.32 0.00 0.00 2.69
264 265 3.161866 CCGGGGGAGAAAAATCTTCAAA 58.838 45.455 0.00 0.00 0.00 2.69
265 266 3.056821 CCGGGGGAGAAAAATCTTCAAAC 60.057 47.826 0.00 0.00 0.00 2.93
266 267 3.365969 CGGGGGAGAAAAATCTTCAAACG 60.366 47.826 0.00 0.00 0.00 3.60
267 268 3.824443 GGGGGAGAAAAATCTTCAAACGA 59.176 43.478 0.00 0.00 0.00 3.85
268 269 4.082733 GGGGGAGAAAAATCTTCAAACGAG 60.083 45.833 0.00 0.00 0.00 4.18
269 270 4.760204 GGGGAGAAAAATCTTCAAACGAGA 59.240 41.667 0.00 0.00 0.00 4.04
270 271 5.334957 GGGGAGAAAAATCTTCAAACGAGAC 60.335 44.000 0.00 0.00 0.00 3.36
271 272 5.374898 GGAGAAAAATCTTCAAACGAGACG 58.625 41.667 0.00 0.00 0.00 4.18
272 273 5.344207 AGAAAAATCTTCAAACGAGACGG 57.656 39.130 0.00 0.00 0.00 4.79
273 274 5.054477 AGAAAAATCTTCAAACGAGACGGA 58.946 37.500 0.00 0.00 0.00 4.69
274 275 5.526111 AGAAAAATCTTCAAACGAGACGGAA 59.474 36.000 0.00 0.00 0.00 4.30
275 276 4.992381 AAATCTTCAAACGAGACGGAAG 57.008 40.909 0.00 0.00 38.43 3.46
276 277 1.779569 TCTTCAAACGAGACGGAAGC 58.220 50.000 0.00 0.00 37.31 3.86
277 278 0.790814 CTTCAAACGAGACGGAAGCC 59.209 55.000 0.00 0.00 31.44 4.35
278 279 0.105224 TTCAAACGAGACGGAAGCCA 59.895 50.000 0.00 0.00 0.00 4.75
279 280 0.599204 TCAAACGAGACGGAAGCCAC 60.599 55.000 0.00 0.00 0.00 5.01
280 281 0.878523 CAAACGAGACGGAAGCCACA 60.879 55.000 0.00 0.00 0.00 4.17
281 282 0.878961 AAACGAGACGGAAGCCACAC 60.879 55.000 0.00 0.00 0.00 3.82
282 283 1.745320 AACGAGACGGAAGCCACACT 61.745 55.000 0.00 0.00 0.00 3.55
283 284 1.444553 CGAGACGGAAGCCACACTC 60.445 63.158 0.00 0.00 0.00 3.51
284 285 1.079750 GAGACGGAAGCCACACTCC 60.080 63.158 0.00 0.00 0.00 3.85
285 286 1.534235 AGACGGAAGCCACACTCCT 60.534 57.895 0.00 0.00 0.00 3.69
286 287 0.251653 AGACGGAAGCCACACTCCTA 60.252 55.000 0.00 0.00 0.00 2.94
287 288 0.824759 GACGGAAGCCACACTCCTAT 59.175 55.000 0.00 0.00 0.00 2.57
288 289 2.029623 GACGGAAGCCACACTCCTATA 58.970 52.381 0.00 0.00 0.00 1.31
289 290 2.032620 ACGGAAGCCACACTCCTATAG 58.967 52.381 0.00 0.00 0.00 1.31
290 291 1.341531 CGGAAGCCACACTCCTATAGG 59.658 57.143 13.07 13.07 0.00 2.57
291 292 1.070914 GGAAGCCACACTCCTATAGGC 59.929 57.143 14.50 1.07 45.54 3.93
293 294 2.426651 GCCACACTCCTATAGGCGA 58.573 57.895 15.77 0.00 35.42 5.54
294 295 0.315568 GCCACACTCCTATAGGCGAG 59.684 60.000 15.77 10.05 35.42 5.03
295 296 1.982660 CCACACTCCTATAGGCGAGA 58.017 55.000 15.77 0.00 34.44 4.04
296 297 2.520069 CCACACTCCTATAGGCGAGAT 58.480 52.381 15.77 0.37 34.44 2.75
297 298 3.687125 CCACACTCCTATAGGCGAGATA 58.313 50.000 15.77 0.00 34.44 1.98
298 299 4.274147 CCACACTCCTATAGGCGAGATAT 58.726 47.826 15.77 0.00 34.44 1.63
299 300 4.097135 CCACACTCCTATAGGCGAGATATG 59.903 50.000 15.77 5.39 34.44 1.78
300 301 4.097135 CACACTCCTATAGGCGAGATATGG 59.903 50.000 15.77 2.32 34.44 2.74
301 302 4.263994 ACACTCCTATAGGCGAGATATGGT 60.264 45.833 15.77 2.84 34.44 3.55
302 303 4.336993 CACTCCTATAGGCGAGATATGGTC 59.663 50.000 15.77 0.00 34.44 4.02
303 304 4.228666 ACTCCTATAGGCGAGATATGGTCT 59.771 45.833 15.77 0.00 35.84 3.85
304 305 5.194473 TCCTATAGGCGAGATATGGTCTT 57.806 43.478 14.50 0.00 34.14 3.01
305 306 5.194432 TCCTATAGGCGAGATATGGTCTTC 58.806 45.833 14.50 0.00 34.14 2.87
306 307 5.044772 TCCTATAGGCGAGATATGGTCTTCT 60.045 44.000 14.50 0.00 34.14 2.85
307 308 5.654650 CCTATAGGCGAGATATGGTCTTCTT 59.345 44.000 5.67 0.00 37.29 2.52
308 309 6.153680 CCTATAGGCGAGATATGGTCTTCTTT 59.846 42.308 5.67 0.00 37.29 2.52
309 310 4.762289 AGGCGAGATATGGTCTTCTTTT 57.238 40.909 0.00 0.00 37.29 2.27
310 311 5.104259 AGGCGAGATATGGTCTTCTTTTT 57.896 39.130 0.00 0.00 37.29 1.94
311 312 6.235231 AGGCGAGATATGGTCTTCTTTTTA 57.765 37.500 0.00 0.00 37.29 1.52
312 313 6.284459 AGGCGAGATATGGTCTTCTTTTTAG 58.716 40.000 0.00 0.00 37.29 1.85
313 314 5.467063 GGCGAGATATGGTCTTCTTTTTAGG 59.533 44.000 0.00 0.00 37.29 2.69
314 315 5.467063 GCGAGATATGGTCTTCTTTTTAGGG 59.533 44.000 0.00 0.00 37.29 3.53
315 316 6.583562 CGAGATATGGTCTTCTTTTTAGGGT 58.416 40.000 0.00 0.00 37.29 4.34
316 317 6.702282 CGAGATATGGTCTTCTTTTTAGGGTC 59.298 42.308 0.00 0.00 37.29 4.46
317 318 6.583562 AGATATGGTCTTCTTTTTAGGGTCG 58.416 40.000 0.00 0.00 31.47 4.79
318 319 2.774687 TGGTCTTCTTTTTAGGGTCGC 58.225 47.619 0.00 0.00 0.00 5.19
319 320 2.082231 GGTCTTCTTTTTAGGGTCGCC 58.918 52.381 0.00 0.00 0.00 5.54
320 321 2.290134 GGTCTTCTTTTTAGGGTCGCCT 60.290 50.000 0.00 0.00 0.00 5.52
321 322 2.742589 GTCTTCTTTTTAGGGTCGCCTG 59.257 50.000 0.00 0.00 0.00 4.85
322 323 1.468914 CTTCTTTTTAGGGTCGCCTGC 59.531 52.381 0.00 0.00 0.00 4.85
323 324 0.322187 TCTTTTTAGGGTCGCCTGCC 60.322 55.000 0.00 0.00 0.00 4.85
359 361 6.599638 AGAGGAGTATCATTTTTCCTTTTCGG 59.400 38.462 0.00 0.00 40.07 4.30
369 371 1.302192 CCTTTTCGGCGAGGGTCAA 60.302 57.895 10.46 0.00 0.00 3.18
420 773 1.817447 AGGCAGGTGAACGAGTACTAC 59.183 52.381 0.00 0.00 0.00 2.73
462 815 2.704616 GAGAGCGACGAGACGAGG 59.295 66.667 0.00 0.00 35.09 4.63
469 822 2.361357 ACGAGACGAGGGGAGTGG 60.361 66.667 0.00 0.00 0.00 4.00
570 937 5.353678 GCAAGACGAGTACTCCTACTTTCTA 59.646 44.000 17.23 0.00 32.96 2.10
644 1011 4.477975 CTGGACCGTCGGCGTCTC 62.478 72.222 12.28 1.70 36.15 3.36
732 1113 2.556622 GGTGTGTTTGATTCCGGTTCAT 59.443 45.455 0.00 0.00 0.00 2.57
787 1168 3.585990 CATGCGGGCCATTCGGTC 61.586 66.667 4.39 0.00 35.48 4.79
830 1211 6.713450 GTGACCCTAATTGACCTGACTTAAAA 59.287 38.462 0.00 0.00 0.00 1.52
941 1328 2.679349 GCTCCTCTGTTCCATCCAGTTC 60.679 54.545 0.00 0.00 0.00 3.01
1314 1716 3.286751 TGCAAACAGGCACGCCTC 61.287 61.111 7.85 0.00 46.28 4.70
1334 1745 3.169099 TCCTTCTCTTCTTCCTCCAGTG 58.831 50.000 0.00 0.00 0.00 3.66
1382 1801 6.379703 TGCTTGTGCATGGGTAATTAGTTAAT 59.620 34.615 0.00 0.00 45.31 1.40
1392 1814 7.070629 TGGGTAATTAGTTAATTCAATCCCCC 58.929 38.462 15.83 0.00 37.16 5.40
1506 1928 0.803117 TCGTCCACTCAGTTCTAGCG 59.197 55.000 0.00 0.00 0.00 4.26
1507 1929 0.179161 CGTCCACTCAGTTCTAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
1521 1944 1.179174 TAGCGGCGCTACATCAGGAT 61.179 55.000 35.39 12.81 40.44 3.24
1537 1960 1.162800 GGATGCACGAGGGCTTCATC 61.163 60.000 13.89 2.22 39.10 2.92
1545 1970 1.202510 CGAGGGCTTCATCTTCCTCTG 60.203 57.143 0.00 0.00 42.56 3.35
1569 1994 8.607441 TGGCTAGCAATTGATTAGTATTAGTG 57.393 34.615 18.24 0.00 0.00 2.74
1570 1995 7.661437 TGGCTAGCAATTGATTAGTATTAGTGG 59.339 37.037 18.24 0.00 0.00 4.00
1575 2010 6.658831 CAATTGATTAGTATTAGTGGGCACG 58.341 40.000 0.00 0.00 36.20 5.34
1576 2011 5.601583 TTGATTAGTATTAGTGGGCACGA 57.398 39.130 0.00 0.00 36.20 4.35
1606 2041 4.540824 GTTCTTGGCTTCAATCAACTCAC 58.459 43.478 0.00 0.00 0.00 3.51
1711 2167 3.150949 CCTGGACCAGAGCACACA 58.849 61.111 23.77 0.00 32.44 3.72
1712 2168 1.681666 CCTGGACCAGAGCACACAT 59.318 57.895 23.77 0.00 32.44 3.21
1745 2201 3.750652 TGCGATTAATTGTGTTGCAGAGA 59.249 39.130 4.60 0.00 0.00 3.10
1814 2270 6.479884 AGCTTCAAAATTGGATCTGAGTAGT 58.520 36.000 0.00 0.00 0.00 2.73
1856 2320 6.795144 ATTGTGCATCTCCCATTTAATCAA 57.205 33.333 0.00 0.00 0.00 2.57
1859 2323 5.479724 TGTGCATCTCCCATTTAATCAACAA 59.520 36.000 0.00 0.00 0.00 2.83
1864 2328 6.588719 TCTCCCATTTAATCAACAACCAAG 57.411 37.500 0.00 0.00 0.00 3.61
1902 2524 4.003648 GACTGTCAATCCGGAAACTGATT 58.996 43.478 9.01 0.00 43.95 2.57
1904 2526 3.000041 TGTCAATCCGGAAACTGATTCG 59.000 45.455 9.01 0.00 41.62 3.34
1905 2527 3.259064 GTCAATCCGGAAACTGATTCGA 58.741 45.455 9.01 0.00 41.62 3.71
1906 2528 3.062234 GTCAATCCGGAAACTGATTCGAC 59.938 47.826 9.01 4.38 41.62 4.20
1907 2529 1.922570 ATCCGGAAACTGATTCGACG 58.077 50.000 9.01 0.00 39.05 5.12
1908 2530 0.883153 TCCGGAAACTGATTCGACGA 59.117 50.000 0.00 0.00 39.05 4.20
1909 2531 1.475280 TCCGGAAACTGATTCGACGAT 59.525 47.619 0.00 0.00 39.05 3.73
1910 2532 1.588404 CCGGAAACTGATTCGACGATG 59.412 52.381 0.00 0.00 39.05 3.84
1916 2538 2.025155 ACTGATTCGACGATGTAGCCT 58.975 47.619 0.00 0.00 0.00 4.58
1922 2544 1.009900 GACGATGTAGCCTCCGTCG 60.010 63.158 0.00 0.00 44.70 5.12
1925 2547 1.437772 CGATGTAGCCTCCGTCGTCT 61.438 60.000 0.00 0.00 36.76 4.18
1938 2560 0.249155 GTCGTCTTTGTCGTGGTGGA 60.249 55.000 0.00 0.00 0.00 4.02
1980 2610 2.695359 TCTTTCGTGTACCCATCTTGC 58.305 47.619 0.00 0.00 0.00 4.01
1983 2613 0.319083 TCGTGTACCCATCTTGCGTT 59.681 50.000 0.00 0.00 0.00 4.84
2022 2652 5.109210 CGAATGACAGACTTAAGCCATACA 58.891 41.667 1.29 0.00 0.00 2.29
2057 2688 1.771073 TACTGCGCTTGTGTGTGCAC 61.771 55.000 10.75 10.75 46.69 4.57
2141 2772 0.593128 GCATTGTCTTGGTTGCTCGT 59.407 50.000 0.00 0.00 32.41 4.18
2142 2773 1.664016 GCATTGTCTTGGTTGCTCGTG 60.664 52.381 0.00 0.00 32.41 4.35
2143 2774 1.069022 CATTGTCTTGGTTGCTCGTGG 60.069 52.381 0.00 0.00 0.00 4.94
2144 2775 0.107410 TTGTCTTGGTTGCTCGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
2145 2776 0.813610 TGTCTTGGTTGCTCGTGGTG 60.814 55.000 0.00 0.00 0.00 4.17
2146 2777 0.814010 GTCTTGGTTGCTCGTGGTGT 60.814 55.000 0.00 0.00 0.00 4.16
2147 2778 0.531974 TCTTGGTTGCTCGTGGTGTC 60.532 55.000 0.00 0.00 0.00 3.67
2148 2779 1.507141 CTTGGTTGCTCGTGGTGTCC 61.507 60.000 0.00 0.00 0.00 4.02
2149 2780 2.668550 GGTTGCTCGTGGTGTCCC 60.669 66.667 0.00 0.00 0.00 4.46
2150 2781 2.426023 GTTGCTCGTGGTGTCCCT 59.574 61.111 0.00 0.00 0.00 4.20
2151 2782 1.227853 GTTGCTCGTGGTGTCCCTT 60.228 57.895 0.00 0.00 0.00 3.95
2152 2783 0.818040 GTTGCTCGTGGTGTCCCTTT 60.818 55.000 0.00 0.00 0.00 3.11
2153 2784 0.106918 TTGCTCGTGGTGTCCCTTTT 60.107 50.000 0.00 0.00 0.00 2.27
2154 2785 0.106918 TGCTCGTGGTGTCCCTTTTT 60.107 50.000 0.00 0.00 0.00 1.94
2206 2837 2.686816 GGTTGATGTTGGACGCGGG 61.687 63.158 12.47 0.00 0.00 6.13
2222 2853 2.597510 GGGCTCGGTTGGTGCTTT 60.598 61.111 0.00 0.00 35.51 3.51
2233 2864 3.320826 GGTTGGTGCTTTTCAGGTTGTAT 59.679 43.478 0.00 0.00 0.00 2.29
2234 2865 4.202212 GGTTGGTGCTTTTCAGGTTGTATT 60.202 41.667 0.00 0.00 0.00 1.89
2235 2866 5.356426 GTTGGTGCTTTTCAGGTTGTATTT 58.644 37.500 0.00 0.00 0.00 1.40
2236 2867 5.606348 TGGTGCTTTTCAGGTTGTATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2237 2868 5.983540 TGGTGCTTTTCAGGTTGTATTTTT 58.016 33.333 0.00 0.00 0.00 1.94
2255 2886 2.801077 TTTCGAAAAGGGGGAGATCC 57.199 50.000 8.44 0.00 0.00 3.36
2265 2896 3.866582 GGAGATCCCCGGCCTGTG 61.867 72.222 0.00 0.00 0.00 3.66
2266 2897 4.554036 GAGATCCCCGGCCTGTGC 62.554 72.222 0.00 0.00 0.00 4.57
2268 2899 4.195334 GATCCCCGGCCTGTGCAT 62.195 66.667 0.00 0.00 40.13 3.96
2269 2900 3.721370 GATCCCCGGCCTGTGCATT 62.721 63.158 0.00 0.00 40.13 3.56
2270 2901 2.337879 GATCCCCGGCCTGTGCATTA 62.338 60.000 0.00 0.00 40.13 1.90
2271 2902 2.343475 ATCCCCGGCCTGTGCATTAG 62.343 60.000 0.00 0.00 40.13 1.73
2272 2903 2.589540 CCCGGCCTGTGCATTAGA 59.410 61.111 0.00 0.00 40.13 2.10
2273 2904 1.524621 CCCGGCCTGTGCATTAGAG 60.525 63.158 0.00 0.00 40.13 2.43
2274 2905 2.182842 CCGGCCTGTGCATTAGAGC 61.183 63.158 0.00 0.00 40.13 4.09
2275 2906 2.528743 CGGCCTGTGCATTAGAGCG 61.529 63.158 0.00 0.00 40.13 5.03
2276 2907 1.153369 GGCCTGTGCATTAGAGCGA 60.153 57.895 0.00 0.00 40.13 4.93
2277 2908 0.533755 GGCCTGTGCATTAGAGCGAT 60.534 55.000 0.00 0.00 40.13 4.58
2278 2909 0.585357 GCCTGTGCATTAGAGCGATG 59.415 55.000 0.00 0.00 37.31 3.84
2284 2915 2.776694 GCATTAGAGCGATGCATACG 57.223 50.000 0.00 6.68 46.96 3.06
2285 2916 2.061773 GCATTAGAGCGATGCATACGT 58.938 47.619 16.26 0.00 46.96 3.57
2286 2917 3.242518 GCATTAGAGCGATGCATACGTA 58.757 45.455 16.26 0.00 46.96 3.57
2307 2938 2.627515 ACATCCGCAGAGCAATGTAT 57.372 45.000 5.52 0.00 34.39 2.29
2327 2958 1.204704 TGACATGATCGACGCTTCCTT 59.795 47.619 0.00 0.00 0.00 3.36
2330 2961 2.159043 ACATGATCGACGCTTCCTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
2364 2995 0.107214 GCCCGATCATGTCCTGGAAA 60.107 55.000 0.00 0.00 0.00 3.13
2365 2996 1.681780 GCCCGATCATGTCCTGGAAAA 60.682 52.381 0.00 0.00 0.00 2.29
2383 3014 2.240493 AACCCACTTGTTGACTCTCG 57.760 50.000 0.00 0.00 0.00 4.04
2384 3015 0.393077 ACCCACTTGTTGACTCTCGG 59.607 55.000 0.00 0.00 0.00 4.63
2385 3016 0.679505 CCCACTTGTTGACTCTCGGA 59.320 55.000 0.00 0.00 0.00 4.55
2387 3018 1.423395 CACTTGTTGACTCTCGGAGC 58.577 55.000 0.00 0.00 32.04 4.70
2388 3019 1.000283 CACTTGTTGACTCTCGGAGCT 60.000 52.381 0.00 0.00 32.04 4.09
2422 4871 0.679505 TTTGTGCTAGAGTCGTGGCT 59.320 50.000 0.00 0.00 0.00 4.75
2423 4872 0.038251 TTGTGCTAGAGTCGTGGCTG 60.038 55.000 0.00 0.00 0.00 4.85
2424 4873 1.807573 GTGCTAGAGTCGTGGCTGC 60.808 63.158 0.00 0.00 0.00 5.25
2445 4894 3.866539 ACGAAGGTCCCTCGTGTT 58.133 55.556 14.77 0.00 38.75 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.751767 TCATGGTTTTCACTGGCTTTTT 57.248 36.364 0.00 0.00 0.00 1.94
32 33 4.751767 TTCATGGTTTTCACTGGCTTTT 57.248 36.364 0.00 0.00 0.00 2.27
33 34 4.405358 TCTTTCATGGTTTTCACTGGCTTT 59.595 37.500 0.00 0.00 0.00 3.51
34 35 3.960102 TCTTTCATGGTTTTCACTGGCTT 59.040 39.130 0.00 0.00 0.00 4.35
35 36 3.565307 TCTTTCATGGTTTTCACTGGCT 58.435 40.909 0.00 0.00 0.00 4.75
36 37 4.320608 TTCTTTCATGGTTTTCACTGGC 57.679 40.909 0.00 0.00 0.00 4.85
37 38 4.739716 CGTTTCTTTCATGGTTTTCACTGG 59.260 41.667 0.00 0.00 0.00 4.00
38 39 5.455525 GTCGTTTCTTTCATGGTTTTCACTG 59.544 40.000 0.00 0.00 0.00 3.66
39 40 5.578776 GTCGTTTCTTTCATGGTTTTCACT 58.421 37.500 0.00 0.00 0.00 3.41
40 41 4.436523 CGTCGTTTCTTTCATGGTTTTCAC 59.563 41.667 0.00 0.00 0.00 3.18
41 42 4.333095 TCGTCGTTTCTTTCATGGTTTTCA 59.667 37.500 0.00 0.00 0.00 2.69
42 43 4.839796 TCGTCGTTTCTTTCATGGTTTTC 58.160 39.130 0.00 0.00 0.00 2.29
43 44 4.886247 TCGTCGTTTCTTTCATGGTTTT 57.114 36.364 0.00 0.00 0.00 2.43
44 45 4.886247 TTCGTCGTTTCTTTCATGGTTT 57.114 36.364 0.00 0.00 0.00 3.27
45 46 4.886247 TTTCGTCGTTTCTTTCATGGTT 57.114 36.364 0.00 0.00 0.00 3.67
46 47 4.496840 GGTTTTCGTCGTTTCTTTCATGGT 60.497 41.667 0.00 0.00 0.00 3.55
47 48 3.972502 GGTTTTCGTCGTTTCTTTCATGG 59.027 43.478 0.00 0.00 0.00 3.66
48 49 3.657625 CGGTTTTCGTCGTTTCTTTCATG 59.342 43.478 0.00 0.00 0.00 3.07
49 50 3.303526 CCGGTTTTCGTCGTTTCTTTCAT 60.304 43.478 0.00 0.00 37.11 2.57
50 51 2.030701 CCGGTTTTCGTCGTTTCTTTCA 59.969 45.455 0.00 0.00 37.11 2.69
51 52 2.030823 ACCGGTTTTCGTCGTTTCTTTC 59.969 45.455 0.00 0.00 37.11 2.62
52 53 2.009051 ACCGGTTTTCGTCGTTTCTTT 58.991 42.857 0.00 0.00 37.11 2.52
53 54 1.328374 CACCGGTTTTCGTCGTTTCTT 59.672 47.619 2.97 0.00 37.11 2.52
54 55 0.932399 CACCGGTTTTCGTCGTTTCT 59.068 50.000 2.97 0.00 37.11 2.52
55 56 0.929615 TCACCGGTTTTCGTCGTTTC 59.070 50.000 2.97 0.00 37.11 2.78
56 57 1.367659 TTCACCGGTTTTCGTCGTTT 58.632 45.000 2.97 0.00 37.11 3.60
57 58 1.585297 ATTCACCGGTTTTCGTCGTT 58.415 45.000 2.97 0.00 37.11 3.85
58 59 1.585297 AATTCACCGGTTTTCGTCGT 58.415 45.000 2.97 0.00 37.11 4.34
59 60 2.673976 AAATTCACCGGTTTTCGTCG 57.326 45.000 2.97 0.00 37.11 5.12
60 61 4.106909 ACAAAAATTCACCGGTTTTCGTC 58.893 39.130 2.97 0.00 37.11 4.20
61 62 4.112716 ACAAAAATTCACCGGTTTTCGT 57.887 36.364 2.97 0.00 37.11 3.85
62 63 4.327627 ACAACAAAAATTCACCGGTTTTCG 59.672 37.500 2.97 0.00 38.88 3.46
63 64 5.788055 ACAACAAAAATTCACCGGTTTTC 57.212 34.783 2.97 0.00 0.00 2.29
64 65 5.106515 CCAACAACAAAAATTCACCGGTTTT 60.107 36.000 2.97 0.00 0.00 2.43
65 66 4.393371 CCAACAACAAAAATTCACCGGTTT 59.607 37.500 2.97 0.00 0.00 3.27
66 67 3.935828 CCAACAACAAAAATTCACCGGTT 59.064 39.130 2.97 0.00 0.00 4.44
67 68 3.195825 TCCAACAACAAAAATTCACCGGT 59.804 39.130 0.00 0.00 0.00 5.28
68 69 3.786635 TCCAACAACAAAAATTCACCGG 58.213 40.909 0.00 0.00 0.00 5.28
69 70 5.786401 TTTCCAACAACAAAAATTCACCG 57.214 34.783 0.00 0.00 0.00 4.94
70 71 7.536964 CAGTTTTTCCAACAACAAAAATTCACC 59.463 33.333 0.00 0.00 34.76 4.02
71 72 8.286097 TCAGTTTTTCCAACAACAAAAATTCAC 58.714 29.630 0.00 0.00 34.76 3.18
72 73 8.383318 TCAGTTTTTCCAACAACAAAAATTCA 57.617 26.923 0.00 0.00 34.76 2.57
77 78 9.712305 TCTTTATCAGTTTTTCCAACAACAAAA 57.288 25.926 0.00 0.00 0.00 2.44
78 79 9.712305 TTCTTTATCAGTTTTTCCAACAACAAA 57.288 25.926 0.00 0.00 0.00 2.83
79 80 9.712305 TTTCTTTATCAGTTTTTCCAACAACAA 57.288 25.926 0.00 0.00 0.00 2.83
80 81 9.145865 GTTTCTTTATCAGTTTTTCCAACAACA 57.854 29.630 0.00 0.00 0.00 3.33
81 82 8.318167 CGTTTCTTTATCAGTTTTTCCAACAAC 58.682 33.333 0.00 0.00 0.00 3.32
82 83 7.489757 CCGTTTCTTTATCAGTTTTTCCAACAA 59.510 33.333 0.00 0.00 0.00 2.83
83 84 6.975772 CCGTTTCTTTATCAGTTTTTCCAACA 59.024 34.615 0.00 0.00 0.00 3.33
84 85 7.197703 TCCGTTTCTTTATCAGTTTTTCCAAC 58.802 34.615 0.00 0.00 0.00 3.77
85 86 7.283580 TCTCCGTTTCTTTATCAGTTTTTCCAA 59.716 33.333 0.00 0.00 0.00 3.53
86 87 6.768861 TCTCCGTTTCTTTATCAGTTTTTCCA 59.231 34.615 0.00 0.00 0.00 3.53
87 88 7.198306 TCTCCGTTTCTTTATCAGTTTTTCC 57.802 36.000 0.00 0.00 0.00 3.13
88 89 9.511144 TTTTCTCCGTTTCTTTATCAGTTTTTC 57.489 29.630 0.00 0.00 0.00 2.29
89 90 9.297586 GTTTTCTCCGTTTCTTTATCAGTTTTT 57.702 29.630 0.00 0.00 0.00 1.94
90 91 8.463607 TGTTTTCTCCGTTTCTTTATCAGTTTT 58.536 29.630 0.00 0.00 0.00 2.43
91 92 7.992008 TGTTTTCTCCGTTTCTTTATCAGTTT 58.008 30.769 0.00 0.00 0.00 2.66
92 93 7.497909 TCTGTTTTCTCCGTTTCTTTATCAGTT 59.502 33.333 0.00 0.00 0.00 3.16
93 94 6.990349 TCTGTTTTCTCCGTTTCTTTATCAGT 59.010 34.615 0.00 0.00 0.00 3.41
94 95 7.421530 TCTGTTTTCTCCGTTTCTTTATCAG 57.578 36.000 0.00 0.00 0.00 2.90
95 96 7.795482 TTCTGTTTTCTCCGTTTCTTTATCA 57.205 32.000 0.00 0.00 0.00 2.15
96 97 8.557029 TCTTTCTGTTTTCTCCGTTTCTTTATC 58.443 33.333 0.00 0.00 0.00 1.75
97 98 8.446599 TCTTTCTGTTTTCTCCGTTTCTTTAT 57.553 30.769 0.00 0.00 0.00 1.40
98 99 7.852971 TCTTTCTGTTTTCTCCGTTTCTTTA 57.147 32.000 0.00 0.00 0.00 1.85
99 100 6.753107 TCTTTCTGTTTTCTCCGTTTCTTT 57.247 33.333 0.00 0.00 0.00 2.52
100 101 6.753107 TTCTTTCTGTTTTCTCCGTTTCTT 57.247 33.333 0.00 0.00 0.00 2.52
101 102 6.598064 TCTTTCTTTCTGTTTTCTCCGTTTCT 59.402 34.615 0.00 0.00 0.00 2.52
102 103 6.782150 TCTTTCTTTCTGTTTTCTCCGTTTC 58.218 36.000 0.00 0.00 0.00 2.78
103 104 6.753107 TCTTTCTTTCTGTTTTCTCCGTTT 57.247 33.333 0.00 0.00 0.00 3.60
104 105 6.944234 ATCTTTCTTTCTGTTTTCTCCGTT 57.056 33.333 0.00 0.00 0.00 4.44
105 106 8.446599 TTTATCTTTCTTTCTGTTTTCTCCGT 57.553 30.769 0.00 0.00 0.00 4.69
106 107 9.730420 TTTTTATCTTTCTTTCTGTTTTCTCCG 57.270 29.630 0.00 0.00 0.00 4.63
144 145 5.536916 TGGTTGACAGATTTATCCGGTTTTT 59.463 36.000 0.00 0.00 0.00 1.94
145 146 5.048294 GTGGTTGACAGATTTATCCGGTTTT 60.048 40.000 0.00 0.00 0.00 2.43
146 147 4.457949 GTGGTTGACAGATTTATCCGGTTT 59.542 41.667 0.00 0.00 0.00 3.27
147 148 4.007659 GTGGTTGACAGATTTATCCGGTT 58.992 43.478 0.00 0.00 0.00 4.44
148 149 3.606687 GTGGTTGACAGATTTATCCGGT 58.393 45.455 0.00 0.00 0.00 5.28
149 150 2.607635 CGTGGTTGACAGATTTATCCGG 59.392 50.000 0.00 0.00 0.00 5.14
150 151 2.030457 GCGTGGTTGACAGATTTATCCG 59.970 50.000 0.00 0.00 0.00 4.18
151 152 2.030457 CGCGTGGTTGACAGATTTATCC 59.970 50.000 0.00 0.00 0.00 2.59
152 153 2.927477 TCGCGTGGTTGACAGATTTATC 59.073 45.455 5.77 0.00 0.00 1.75
153 154 2.967362 TCGCGTGGTTGACAGATTTAT 58.033 42.857 5.77 0.00 0.00 1.40
154 155 2.442212 TCGCGTGGTTGACAGATTTA 57.558 45.000 5.77 0.00 0.00 1.40
155 156 1.531149 CTTCGCGTGGTTGACAGATTT 59.469 47.619 5.77 0.00 0.00 2.17
156 157 1.148310 CTTCGCGTGGTTGACAGATT 58.852 50.000 5.77 0.00 0.00 2.40
157 158 0.317160 TCTTCGCGTGGTTGACAGAT 59.683 50.000 5.77 0.00 0.00 2.90
158 159 0.318699 CTCTTCGCGTGGTTGACAGA 60.319 55.000 5.77 0.00 0.00 3.41
159 160 0.597637 ACTCTTCGCGTGGTTGACAG 60.598 55.000 5.77 0.00 0.00 3.51
160 161 0.669619 TACTCTTCGCGTGGTTGACA 59.330 50.000 5.77 0.00 0.00 3.58
161 162 1.058404 GTACTCTTCGCGTGGTTGAC 58.942 55.000 5.77 0.00 0.00 3.18
162 163 0.038892 GGTACTCTTCGCGTGGTTGA 60.039 55.000 5.77 0.00 0.00 3.18
163 164 1.342082 CGGTACTCTTCGCGTGGTTG 61.342 60.000 5.77 0.00 0.00 3.77
164 165 1.080974 CGGTACTCTTCGCGTGGTT 60.081 57.895 5.77 0.00 0.00 3.67
165 166 2.564975 CGGTACTCTTCGCGTGGT 59.435 61.111 5.77 3.67 0.00 4.16
166 167 2.202570 CCGGTACTCTTCGCGTGG 60.203 66.667 5.77 0.00 0.00 4.94
167 168 2.879462 GCCGGTACTCTTCGCGTG 60.879 66.667 5.77 0.00 0.00 5.34
168 169 2.922950 TTGCCGGTACTCTTCGCGT 61.923 57.895 5.77 0.00 0.00 6.01
169 170 2.126228 TTGCCGGTACTCTTCGCG 60.126 61.111 1.90 0.00 0.00 5.87
170 171 2.442188 CGTTGCCGGTACTCTTCGC 61.442 63.158 1.90 0.00 0.00 4.70
171 172 0.179145 ATCGTTGCCGGTACTCTTCG 60.179 55.000 1.90 0.00 33.95 3.79
172 173 1.278238 CATCGTTGCCGGTACTCTTC 58.722 55.000 1.90 0.00 33.95 2.87
173 174 0.108329 CCATCGTTGCCGGTACTCTT 60.108 55.000 1.90 0.00 33.95 2.85
174 175 0.968901 TCCATCGTTGCCGGTACTCT 60.969 55.000 1.90 0.00 33.95 3.24
175 176 0.108520 TTCCATCGTTGCCGGTACTC 60.109 55.000 1.90 0.00 33.95 2.59
176 177 0.390735 GTTCCATCGTTGCCGGTACT 60.391 55.000 1.90 0.00 33.95 2.73
177 178 0.671163 TGTTCCATCGTTGCCGGTAC 60.671 55.000 1.90 0.36 33.95 3.34
178 179 0.250793 ATGTTCCATCGTTGCCGGTA 59.749 50.000 1.90 0.00 33.95 4.02
179 180 0.608035 AATGTTCCATCGTTGCCGGT 60.608 50.000 1.90 0.00 33.95 5.28
180 181 0.179166 CAATGTTCCATCGTTGCCGG 60.179 55.000 0.00 0.00 33.95 6.13
181 182 3.311080 CAATGTTCCATCGTTGCCG 57.689 52.632 0.00 0.00 0.00 5.69
184 185 0.521291 ACGGCAATGTTCCATCGTTG 59.479 50.000 0.00 0.00 37.38 4.10
185 186 1.068610 CAACGGCAATGTTCCATCGTT 60.069 47.619 0.00 0.00 40.70 3.85
186 187 0.521291 CAACGGCAATGTTCCATCGT 59.479 50.000 0.00 0.00 0.00 3.73
187 188 0.521291 ACAACGGCAATGTTCCATCG 59.479 50.000 0.00 0.00 0.00 3.84
188 189 2.595386 GAACAACGGCAATGTTCCATC 58.405 47.619 17.15 0.00 46.94 3.51
189 190 2.723124 GAACAACGGCAATGTTCCAT 57.277 45.000 17.15 0.00 46.94 3.41
193 194 2.853731 TTTCGAACAACGGCAATGTT 57.146 40.000 0.00 4.74 43.37 2.71
194 195 2.853731 TTTTCGAACAACGGCAATGT 57.146 40.000 0.00 0.00 42.82 2.71
211 212 4.322424 GGGACGGCCTGTTTGATTATTTTT 60.322 41.667 7.57 0.00 0.00 1.94
212 213 3.194755 GGGACGGCCTGTTTGATTATTTT 59.805 43.478 7.57 0.00 0.00 1.82
213 214 2.758423 GGGACGGCCTGTTTGATTATTT 59.242 45.455 7.57 0.00 0.00 1.40
214 215 2.291282 TGGGACGGCCTGTTTGATTATT 60.291 45.455 7.57 0.00 0.00 1.40
215 216 1.283613 TGGGACGGCCTGTTTGATTAT 59.716 47.619 7.57 0.00 0.00 1.28
216 217 0.693622 TGGGACGGCCTGTTTGATTA 59.306 50.000 7.57 0.00 0.00 1.75
217 218 0.609131 CTGGGACGGCCTGTTTGATT 60.609 55.000 7.57 0.00 0.00 2.57
218 219 1.002134 CTGGGACGGCCTGTTTGAT 60.002 57.895 7.57 0.00 0.00 2.57
219 220 1.990160 AACTGGGACGGCCTGTTTGA 61.990 55.000 7.57 0.00 39.14 2.69
220 221 0.250553 TAACTGGGACGGCCTGTTTG 60.251 55.000 20.71 4.61 39.14 2.93
221 222 0.250597 GTAACTGGGACGGCCTGTTT 60.251 55.000 20.71 8.49 39.14 2.83
222 223 1.373812 GTAACTGGGACGGCCTGTT 59.626 57.895 19.74 19.74 39.14 3.16
223 224 1.412453 TTGTAACTGGGACGGCCTGT 61.412 55.000 7.57 3.45 39.14 4.00
224 225 0.953960 GTTGTAACTGGGACGGCCTG 60.954 60.000 7.57 2.65 39.14 4.85
225 226 1.373812 GTTGTAACTGGGACGGCCT 59.626 57.895 7.57 0.00 39.14 5.19
226 227 1.673337 GGTTGTAACTGGGACGGCC 60.673 63.158 0.00 0.00 39.14 6.13
227 228 2.030958 CGGTTGTAACTGGGACGGC 61.031 63.158 0.00 0.00 39.14 5.68
228 229 4.272100 CGGTTGTAACTGGGACGG 57.728 61.111 0.00 0.00 42.99 4.79
234 235 0.688487 TTCTCCCCCGGTTGTAACTG 59.312 55.000 0.00 0.00 35.04 3.16
235 236 1.437397 TTTCTCCCCCGGTTGTAACT 58.563 50.000 0.00 0.00 0.00 2.24
236 237 2.275134 TTTTCTCCCCCGGTTGTAAC 57.725 50.000 0.00 0.00 0.00 2.50
237 238 3.074836 AGATTTTTCTCCCCCGGTTGTAA 59.925 43.478 0.00 0.00 0.00 2.41
238 239 2.645797 AGATTTTTCTCCCCCGGTTGTA 59.354 45.455 0.00 0.00 0.00 2.41
239 240 1.427753 AGATTTTTCTCCCCCGGTTGT 59.572 47.619 0.00 0.00 0.00 3.32
240 241 2.215942 AGATTTTTCTCCCCCGGTTG 57.784 50.000 0.00 0.00 0.00 3.77
241 242 2.109304 TGAAGATTTTTCTCCCCCGGTT 59.891 45.455 0.00 0.00 0.00 4.44
242 243 1.708551 TGAAGATTTTTCTCCCCCGGT 59.291 47.619 0.00 0.00 0.00 5.28
243 244 2.507407 TGAAGATTTTTCTCCCCCGG 57.493 50.000 0.00 0.00 0.00 5.73
244 245 3.365969 CGTTTGAAGATTTTTCTCCCCCG 60.366 47.826 0.00 0.00 0.00 5.73
245 246 3.824443 TCGTTTGAAGATTTTTCTCCCCC 59.176 43.478 0.00 0.00 0.00 5.40
246 247 4.760204 TCTCGTTTGAAGATTTTTCTCCCC 59.240 41.667 0.00 0.00 0.00 4.81
247 248 5.614887 CGTCTCGTTTGAAGATTTTTCTCCC 60.615 44.000 0.00 0.00 0.00 4.30
248 249 5.374898 CGTCTCGTTTGAAGATTTTTCTCC 58.625 41.667 0.00 0.00 0.00 3.71
249 250 5.176958 TCCGTCTCGTTTGAAGATTTTTCTC 59.823 40.000 0.00 0.00 0.00 2.87
250 251 5.054477 TCCGTCTCGTTTGAAGATTTTTCT 58.946 37.500 0.00 0.00 0.00 2.52
251 252 5.338614 TCCGTCTCGTTTGAAGATTTTTC 57.661 39.130 0.00 0.00 0.00 2.29
252 253 5.744666 TTCCGTCTCGTTTGAAGATTTTT 57.255 34.783 0.00 0.00 0.00 1.94
253 254 4.319549 GCTTCCGTCTCGTTTGAAGATTTT 60.320 41.667 0.00 0.00 37.07 1.82
254 255 3.186613 GCTTCCGTCTCGTTTGAAGATTT 59.813 43.478 0.00 0.00 37.07 2.17
255 256 2.737252 GCTTCCGTCTCGTTTGAAGATT 59.263 45.455 0.00 0.00 37.07 2.40
256 257 2.338500 GCTTCCGTCTCGTTTGAAGAT 58.662 47.619 0.00 0.00 37.07 2.40
257 258 1.604693 GGCTTCCGTCTCGTTTGAAGA 60.605 52.381 0.00 0.00 37.07 2.87
258 259 0.790814 GGCTTCCGTCTCGTTTGAAG 59.209 55.000 0.00 0.00 37.78 3.02
259 260 0.105224 TGGCTTCCGTCTCGTTTGAA 59.895 50.000 0.00 0.00 0.00 2.69
260 261 0.599204 GTGGCTTCCGTCTCGTTTGA 60.599 55.000 0.00 0.00 0.00 2.69
261 262 0.878523 TGTGGCTTCCGTCTCGTTTG 60.879 55.000 0.00 0.00 0.00 2.93
262 263 0.878961 GTGTGGCTTCCGTCTCGTTT 60.879 55.000 0.00 0.00 0.00 3.60
263 264 1.300697 GTGTGGCTTCCGTCTCGTT 60.301 57.895 0.00 0.00 0.00 3.85
264 265 2.143594 GAGTGTGGCTTCCGTCTCGT 62.144 60.000 0.00 0.00 0.00 4.18
265 266 1.444553 GAGTGTGGCTTCCGTCTCG 60.445 63.158 0.00 0.00 0.00 4.04
266 267 1.079750 GGAGTGTGGCTTCCGTCTC 60.080 63.158 0.00 0.00 0.00 3.36
267 268 0.251653 TAGGAGTGTGGCTTCCGTCT 60.252 55.000 0.00 0.00 0.00 4.18
268 269 0.824759 ATAGGAGTGTGGCTTCCGTC 59.175 55.000 0.00 0.00 0.00 4.79
269 270 2.032620 CTATAGGAGTGTGGCTTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
270 271 1.341531 CCTATAGGAGTGTGGCTTCCG 59.658 57.143 14.11 0.00 37.39 4.30
271 272 1.070914 GCCTATAGGAGTGTGGCTTCC 59.929 57.143 23.61 0.00 40.36 3.46
272 273 1.269831 CGCCTATAGGAGTGTGGCTTC 60.270 57.143 23.61 0.00 41.25 3.86
273 274 0.753262 CGCCTATAGGAGTGTGGCTT 59.247 55.000 23.61 0.00 41.25 4.35
274 275 0.106167 TCGCCTATAGGAGTGTGGCT 60.106 55.000 23.61 0.00 41.25 4.75
275 276 0.315568 CTCGCCTATAGGAGTGTGGC 59.684 60.000 23.61 4.86 40.14 5.01
276 277 1.982660 TCTCGCCTATAGGAGTGTGG 58.017 55.000 23.61 11.05 37.39 4.17
277 278 4.097135 CCATATCTCGCCTATAGGAGTGTG 59.903 50.000 23.61 13.33 37.39 3.82
278 279 4.263994 ACCATATCTCGCCTATAGGAGTGT 60.264 45.833 23.61 12.41 37.39 3.55
279 280 4.274147 ACCATATCTCGCCTATAGGAGTG 58.726 47.826 23.61 19.32 37.39 3.51
280 281 4.228666 AGACCATATCTCGCCTATAGGAGT 59.771 45.833 23.61 6.17 36.33 3.85
281 282 4.787551 AGACCATATCTCGCCTATAGGAG 58.212 47.826 23.61 19.63 31.26 3.69
282 283 4.864483 AGACCATATCTCGCCTATAGGA 57.136 45.455 23.61 1.15 31.26 2.94
283 284 5.197451 AGAAGACCATATCTCGCCTATAGG 58.803 45.833 15.01 15.01 36.27 2.57
284 285 6.767524 AAGAAGACCATATCTCGCCTATAG 57.232 41.667 0.00 0.00 36.27 1.31
285 286 7.540474 AAAAGAAGACCATATCTCGCCTATA 57.460 36.000 0.00 0.00 36.27 1.31
286 287 6.426646 AAAAGAAGACCATATCTCGCCTAT 57.573 37.500 0.00 0.00 36.27 2.57
287 288 5.871396 AAAAGAAGACCATATCTCGCCTA 57.129 39.130 0.00 0.00 36.27 3.93
288 289 4.762289 AAAAGAAGACCATATCTCGCCT 57.238 40.909 0.00 0.00 36.27 5.52
289 290 5.467063 CCTAAAAAGAAGACCATATCTCGCC 59.533 44.000 0.00 0.00 36.27 5.54
290 291 5.467063 CCCTAAAAAGAAGACCATATCTCGC 59.533 44.000 0.00 0.00 36.27 5.03
291 292 6.583562 ACCCTAAAAAGAAGACCATATCTCG 58.416 40.000 0.00 0.00 36.27 4.04
292 293 6.702282 CGACCCTAAAAAGAAGACCATATCTC 59.298 42.308 0.00 0.00 36.27 2.75
293 294 6.583562 CGACCCTAAAAAGAAGACCATATCT 58.416 40.000 0.00 0.00 40.46 1.98
294 295 5.236695 GCGACCCTAAAAAGAAGACCATATC 59.763 44.000 0.00 0.00 0.00 1.63
295 296 5.123936 GCGACCCTAAAAAGAAGACCATAT 58.876 41.667 0.00 0.00 0.00 1.78
296 297 4.510571 GCGACCCTAAAAAGAAGACCATA 58.489 43.478 0.00 0.00 0.00 2.74
297 298 3.344515 GCGACCCTAAAAAGAAGACCAT 58.655 45.455 0.00 0.00 0.00 3.55
298 299 2.551504 GGCGACCCTAAAAAGAAGACCA 60.552 50.000 0.00 0.00 0.00 4.02
299 300 2.082231 GGCGACCCTAAAAAGAAGACC 58.918 52.381 0.00 0.00 0.00 3.85
300 301 2.742589 CAGGCGACCCTAAAAAGAAGAC 59.257 50.000 0.00 0.00 40.33 3.01
301 302 2.874457 GCAGGCGACCCTAAAAAGAAGA 60.874 50.000 0.00 0.00 40.33 2.87
302 303 1.468914 GCAGGCGACCCTAAAAAGAAG 59.531 52.381 0.00 0.00 40.33 2.85
303 304 1.530323 GCAGGCGACCCTAAAAAGAA 58.470 50.000 0.00 0.00 40.33 2.52
304 305 0.322187 GGCAGGCGACCCTAAAAAGA 60.322 55.000 0.00 0.00 40.33 2.52
305 306 0.608035 TGGCAGGCGACCCTAAAAAG 60.608 55.000 0.00 0.00 40.33 2.27
306 307 0.039035 ATGGCAGGCGACCCTAAAAA 59.961 50.000 0.00 0.00 40.33 1.94
307 308 0.039035 AATGGCAGGCGACCCTAAAA 59.961 50.000 0.00 0.00 40.33 1.52
308 309 0.679640 CAATGGCAGGCGACCCTAAA 60.680 55.000 0.00 0.00 40.33 1.85
309 310 1.077787 CAATGGCAGGCGACCCTAA 60.078 57.895 0.00 0.00 40.33 2.69
310 311 2.589540 CAATGGCAGGCGACCCTA 59.410 61.111 0.00 0.00 40.33 3.53
311 312 4.431131 CCAATGGCAGGCGACCCT 62.431 66.667 0.00 0.00 44.25 4.34
312 313 4.740822 ACCAATGGCAGGCGACCC 62.741 66.667 0.00 0.00 0.00 4.46
313 314 3.443045 CACCAATGGCAGGCGACC 61.443 66.667 0.00 0.00 0.00 4.79
314 315 2.268076 AACACCAATGGCAGGCGAC 61.268 57.895 0.00 0.00 0.00 5.19
315 316 2.115052 AACACCAATGGCAGGCGA 59.885 55.556 0.00 0.00 0.00 5.54
316 317 2.203972 CTCAACACCAATGGCAGGCG 62.204 60.000 0.00 0.00 0.00 5.52
317 318 0.895100 TCTCAACACCAATGGCAGGC 60.895 55.000 0.00 0.00 0.00 4.85
318 319 1.171308 CTCTCAACACCAATGGCAGG 58.829 55.000 0.00 0.00 0.00 4.85
319 320 1.171308 CCTCTCAACACCAATGGCAG 58.829 55.000 0.00 0.00 0.00 4.85
320 321 0.770499 TCCTCTCAACACCAATGGCA 59.230 50.000 0.00 0.00 0.00 4.92
321 322 1.271597 ACTCCTCTCAACACCAATGGC 60.272 52.381 0.00 0.00 0.00 4.40
322 323 2.867109 ACTCCTCTCAACACCAATGG 57.133 50.000 0.00 0.00 0.00 3.16
323 324 5.089970 TGATACTCCTCTCAACACCAATG 57.910 43.478 0.00 0.00 0.00 2.82
359 361 3.335579 ACAGACTTTATTTGACCCTCGC 58.664 45.455 0.00 0.00 0.00 5.03
369 371 6.992715 CCTCGAAATCCCATACAGACTTTATT 59.007 38.462 0.00 0.00 0.00 1.40
407 409 4.155462 GTCCATCACAGTAGTACTCGTTCA 59.845 45.833 0.00 0.00 0.00 3.18
420 773 1.474478 ACTACAGCGAGTCCATCACAG 59.526 52.381 0.00 0.00 0.00 3.66
448 801 4.405671 TCCCCTCGTCTCGTCGCT 62.406 66.667 0.00 0.00 0.00 4.93
475 828 3.036084 CGTACGGGCCATCGCATC 61.036 66.667 7.57 0.00 36.38 3.91
476 829 3.845259 ACGTACGGGCCATCGCAT 61.845 61.111 21.06 0.00 36.38 4.73
477 830 4.805231 CACGTACGGGCCATCGCA 62.805 66.667 21.06 0.00 36.38 5.10
479 832 4.805231 TGCACGTACGGGCCATCG 62.805 66.667 37.22 9.16 45.41 3.84
480 833 3.192922 GTGCACGTACGGGCCATC 61.193 66.667 37.22 23.69 45.41 3.51
481 834 3.702048 AGTGCACGTACGGGCCAT 61.702 61.111 37.22 23.94 45.41 4.40
482 835 4.673298 CAGTGCACGTACGGGCCA 62.673 66.667 37.22 23.19 45.41 5.36
483 836 4.675029 ACAGTGCACGTACGGGCC 62.675 66.667 37.22 27.55 45.41 5.80
523 890 0.803768 CGTGCAGGACCTCTGAATCG 60.804 60.000 0.00 0.00 46.18 3.34
563 930 1.135083 CATCACGTCCCGCTAGAAAGT 60.135 52.381 0.00 0.00 0.00 2.66
570 937 1.402896 ATCATCCATCACGTCCCGCT 61.403 55.000 0.00 0.00 0.00 5.52
732 1113 2.745281 GCACGGGTTAAGTCTGCAAATA 59.255 45.455 0.00 0.00 0.00 1.40
815 1196 2.739913 CGCGGATTTTAAGTCAGGTCAA 59.260 45.455 0.00 0.00 0.00 3.18
830 1211 3.873812 GGGGTGGGATTCGCGGAT 61.874 66.667 6.13 1.05 0.00 4.18
941 1328 0.944311 GTGGTGTAGACGTGCAGTGG 60.944 60.000 0.00 0.00 0.00 4.00
985 1372 0.526662 GACATCCCTATCTACGCCCG 59.473 60.000 0.00 0.00 0.00 6.13
1219 1621 2.494918 CGTGTAGGCCCTCTTCCG 59.505 66.667 0.00 0.00 0.00 4.30
1314 1716 2.354604 GCACTGGAGGAAGAAGAGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
1334 1745 2.159407 GCAAGCAAGAAAGAGAGATGGC 60.159 50.000 0.00 0.00 0.00 4.40
1382 1801 1.354368 AGAAAGAAGCGGGGGATTGAA 59.646 47.619 0.00 0.00 0.00 2.69
1392 1814 3.854666 TGAAGAGATGGAGAAAGAAGCG 58.145 45.455 0.00 0.00 0.00 4.68
1506 1928 1.227645 TGCATCCTGATGTAGCGCC 60.228 57.895 2.29 0.00 40.80 6.53
1507 1929 1.825285 CGTGCATCCTGATGTAGCGC 61.825 60.000 0.00 0.00 40.80 5.92
1521 1944 0.391661 GAAGATGAAGCCCTCGTGCA 60.392 55.000 0.00 0.00 0.00 4.57
1537 1960 3.272574 TCAATTGCTAGCCAGAGGAAG 57.727 47.619 13.29 0.00 29.61 3.46
1545 1970 7.119846 CCCACTAATACTAATCAATTGCTAGCC 59.880 40.741 13.29 0.00 0.00 3.93
1569 1994 0.320697 AGAACCAACTACTCGTGCCC 59.679 55.000 0.00 0.00 0.00 5.36
1570 1995 1.798813 CAAGAACCAACTACTCGTGCC 59.201 52.381 0.00 0.00 0.00 5.01
1575 2010 3.740115 TGAAGCCAAGAACCAACTACTC 58.260 45.455 0.00 0.00 0.00 2.59
1576 2011 3.857157 TGAAGCCAAGAACCAACTACT 57.143 42.857 0.00 0.00 0.00 2.57
1606 2041 0.738762 CTGGCATATCGATCGGCAGG 60.739 60.000 29.30 17.83 46.42 4.85
1745 2201 8.629158 TGCGATTCAGCATTATTAATAAAGGTT 58.371 29.630 11.80 3.45 42.92 3.50
1786 2242 6.716628 ACTCAGATCCAATTTTGAAGCTAACA 59.283 34.615 0.00 0.00 0.00 2.41
1829 2285 4.730949 AAATGGGAGATGCACAATTCAG 57.269 40.909 0.00 0.00 30.53 3.02
1856 2320 4.036027 GCAATCGATGATGATCTTGGTTGT 59.964 41.667 0.00 0.00 0.00 3.32
1859 2323 2.804527 CGCAATCGATGATGATCTTGGT 59.195 45.455 0.00 0.00 38.10 3.67
1902 2524 1.434622 GACGGAGGCTACATCGTCGA 61.435 60.000 13.43 0.00 41.60 4.20
1904 2526 1.009900 CGACGGAGGCTACATCGTC 60.010 63.158 7.11 13.24 45.61 4.20
1905 2527 1.748122 ACGACGGAGGCTACATCGT 60.748 57.895 16.09 16.09 40.96 3.73
1906 2528 1.009900 GACGACGGAGGCTACATCG 60.010 63.158 14.48 14.48 38.71 3.84
1907 2529 0.739561 AAGACGACGGAGGCTACATC 59.260 55.000 0.00 0.00 0.00 3.06
1908 2530 1.135083 CAAAGACGACGGAGGCTACAT 60.135 52.381 0.00 0.00 0.00 2.29
1909 2531 0.242825 CAAAGACGACGGAGGCTACA 59.757 55.000 0.00 0.00 0.00 2.74
1910 2532 0.243095 ACAAAGACGACGGAGGCTAC 59.757 55.000 0.00 0.00 0.00 3.58
1916 2538 1.008194 CCACGACAAAGACGACGGA 60.008 57.895 0.00 0.00 34.70 4.69
1922 2544 0.517316 GCATCCACCACGACAAAGAC 59.483 55.000 0.00 0.00 0.00 3.01
1925 2547 0.948623 CGAGCATCCACCACGACAAA 60.949 55.000 0.00 0.00 0.00 2.83
1938 2560 2.426024 AGAAGCATTTGCATTCGAGCAT 59.574 40.909 5.20 0.00 45.19 3.79
1980 2610 2.428902 CCGTGCACATGCCAAACG 60.429 61.111 18.64 7.92 41.18 3.60
2060 2691 4.476410 TGCTAGCGCAGTCGACGG 62.476 66.667 11.47 11.64 42.25 4.79
2061 2692 3.669036 AGTGCTAGCGCAGTCGACG 62.669 63.158 28.83 6.47 46.61 5.12
2080 2711 0.181350 ATTTCTCTCACCCGATGCCC 59.819 55.000 0.00 0.00 0.00 5.36
2154 2785 4.037446 CGGGGACTTCATTTGTCTCAAAAA 59.963 41.667 0.00 0.00 36.69 1.94
2155 2786 3.568007 CGGGGACTTCATTTGTCTCAAAA 59.432 43.478 0.00 0.00 36.69 2.44
2156 2787 3.146066 CGGGGACTTCATTTGTCTCAAA 58.854 45.455 0.00 0.00 36.69 2.69
2157 2788 2.552155 CCGGGGACTTCATTTGTCTCAA 60.552 50.000 0.00 0.00 36.69 3.02
2158 2789 1.003118 CCGGGGACTTCATTTGTCTCA 59.997 52.381 0.00 0.00 36.69 3.27
2159 2790 1.003233 ACCGGGGACTTCATTTGTCTC 59.997 52.381 6.32 0.00 35.04 3.36
2160 2791 1.064825 ACCGGGGACTTCATTTGTCT 58.935 50.000 6.32 0.00 35.04 3.41
2161 2792 1.165270 CACCGGGGACTTCATTTGTC 58.835 55.000 6.32 0.00 0.00 3.18
2162 2793 0.476771 ACACCGGGGACTTCATTTGT 59.523 50.000 12.96 0.00 0.00 2.83
2163 2794 1.269448 CAACACCGGGGACTTCATTTG 59.731 52.381 12.96 0.00 0.00 2.32
2164 2795 1.144093 TCAACACCGGGGACTTCATTT 59.856 47.619 12.96 0.00 0.00 2.32
2165 2796 0.768622 TCAACACCGGGGACTTCATT 59.231 50.000 12.96 0.00 0.00 2.57
2166 2797 0.768622 TTCAACACCGGGGACTTCAT 59.231 50.000 12.96 0.00 0.00 2.57
2174 2805 1.323412 TCAACCATTTCAACACCGGG 58.677 50.000 6.32 0.00 0.00 5.73
2206 2837 1.285950 GAAAAGCACCAACCGAGCC 59.714 57.895 0.00 0.00 0.00 4.70
2234 2865 3.427573 GGATCTCCCCCTTTTCGAAAAA 58.572 45.455 22.67 7.95 0.00 1.94
2235 2866 3.081710 GGATCTCCCCCTTTTCGAAAA 57.918 47.619 21.35 21.35 0.00 2.29
2236 2867 2.801077 GGATCTCCCCCTTTTCGAAA 57.199 50.000 6.47 6.47 0.00 3.46
2248 2879 3.866582 CACAGGCCGGGGATCTCC 61.867 72.222 8.08 0.00 0.00 3.71
2249 2880 4.554036 GCACAGGCCGGGGATCTC 62.554 72.222 10.25 0.00 0.00 2.75
2251 2882 2.337879 TAATGCACAGGCCGGGGATC 62.338 60.000 10.25 0.00 40.13 3.36
2252 2883 2.343475 CTAATGCACAGGCCGGGGAT 62.343 60.000 10.25 3.30 40.13 3.85
2253 2884 3.012119 TAATGCACAGGCCGGGGA 61.012 61.111 10.25 0.35 40.13 4.81
2254 2885 2.516930 CTAATGCACAGGCCGGGG 60.517 66.667 8.08 3.63 40.13 5.73
2255 2886 1.524621 CTCTAATGCACAGGCCGGG 60.525 63.158 8.08 1.20 40.13 5.73
2256 2887 2.182842 GCTCTAATGCACAGGCCGG 61.183 63.158 0.00 0.00 40.13 6.13
2257 2888 2.528743 CGCTCTAATGCACAGGCCG 61.529 63.158 0.00 0.00 40.13 6.13
2258 2889 0.533755 ATCGCTCTAATGCACAGGCC 60.534 55.000 0.00 0.00 40.13 5.19
2259 2890 0.585357 CATCGCTCTAATGCACAGGC 59.415 55.000 0.00 0.00 41.68 4.85
2260 2891 0.585357 GCATCGCTCTAATGCACAGG 59.415 55.000 3.35 0.00 46.93 4.00
2266 2897 6.027749 TGTATACGTATGCATCGCTCTAATG 58.972 40.000 20.58 0.00 0.00 1.90
2267 2898 6.190954 TGTATACGTATGCATCGCTCTAAT 57.809 37.500 20.58 0.00 0.00 1.73
2268 2899 5.616488 TGTATACGTATGCATCGCTCTAA 57.384 39.130 20.58 0.00 0.00 2.10
2269 2900 5.807344 GATGTATACGTATGCATCGCTCTA 58.193 41.667 35.18 12.86 42.78 2.43
2270 2901 4.663166 GATGTATACGTATGCATCGCTCT 58.337 43.478 35.18 18.82 42.78 4.09
2276 2907 3.192633 TCTGCGGATGTATACGTATGCAT 59.807 43.478 31.20 31.20 40.86 3.96
2277 2908 2.554893 TCTGCGGATGTATACGTATGCA 59.445 45.455 25.36 25.36 36.25 3.96
2278 2909 3.172050 CTCTGCGGATGTATACGTATGC 58.828 50.000 18.37 17.03 36.25 3.14
2279 2910 3.172050 GCTCTGCGGATGTATACGTATG 58.828 50.000 18.37 1.18 36.25 2.39
2280 2911 2.817844 TGCTCTGCGGATGTATACGTAT 59.182 45.455 13.54 13.54 36.25 3.06
2281 2912 2.223745 TGCTCTGCGGATGTATACGTA 58.776 47.619 0.00 0.00 36.25 3.57
2282 2913 1.029681 TGCTCTGCGGATGTATACGT 58.970 50.000 0.00 0.00 36.25 3.57
2283 2914 2.134201 TTGCTCTGCGGATGTATACG 57.866 50.000 0.00 0.00 37.13 3.06
2284 2915 3.393800 ACATTGCTCTGCGGATGTATAC 58.606 45.455 0.00 0.00 36.61 1.47
2285 2916 3.751479 ACATTGCTCTGCGGATGTATA 57.249 42.857 0.00 0.00 36.61 1.47
2286 2917 2.627515 ACATTGCTCTGCGGATGTAT 57.372 45.000 0.00 0.00 36.61 2.29
2307 2938 0.817654 AGGAAGCGTCGATCATGTCA 59.182 50.000 0.00 0.00 0.00 3.58
2327 2958 0.254178 GCCAGAGGAAGAAGCCATGA 59.746 55.000 0.00 0.00 0.00 3.07
2330 2961 2.606587 GGGCCAGAGGAAGAAGCCA 61.607 63.158 4.39 0.00 45.72 4.75
2364 2995 1.202651 CCGAGAGTCAACAAGTGGGTT 60.203 52.381 0.00 0.00 0.00 4.11
2365 2996 0.393077 CCGAGAGTCAACAAGTGGGT 59.607 55.000 0.00 0.00 0.00 4.51
2387 3018 2.095768 CACAAACCCAATCAGCGTACAG 60.096 50.000 0.00 0.00 0.00 2.74
2388 3019 1.876799 CACAAACCCAATCAGCGTACA 59.123 47.619 0.00 0.00 0.00 2.90
2395 4844 3.674997 GACTCTAGCACAAACCCAATCA 58.325 45.455 0.00 0.00 0.00 2.57
2424 4873 4.796231 CGAGGGACCTTCGTGGCG 62.796 72.222 17.37 0.00 40.22 5.69
2445 4894 3.704566 ACACCTAGACAGTGTCTTGACAA 59.295 43.478 29.84 11.52 45.13 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.