Multiple sequence alignment - TraesCS2D01G467000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G467000 chr2D 100.000 2589 0 0 558 3146 572264293 572261705 0.000000e+00 4782.0
1 TraesCS2D01G467000 chr2D 100.000 280 0 0 1 280 572264850 572264571 4.650000e-143 518.0
2 TraesCS2D01G467000 chr2B 93.417 1595 49 18 782 2348 687228726 687227160 0.000000e+00 2313.0
3 TraesCS2D01G467000 chr2B 93.400 500 20 10 2370 2865 687227056 687226566 0.000000e+00 728.0
4 TraesCS2D01G467000 chr2B 92.509 267 15 3 14 280 687229333 687229072 8.240000e-101 377.0
5 TraesCS2D01G467000 chr2B 90.000 220 18 3 558 777 687228991 687228776 6.640000e-72 281.0
6 TraesCS2D01G467000 chr2B 96.970 33 1 0 1361 1393 94251561 94251529 4.380000e-04 56.5
7 TraesCS2D01G467000 chr2B 96.875 32 1 0 1361 1392 94090359 94090328 2.000000e-03 54.7
8 TraesCS2D01G467000 chr2A 96.270 1421 26 6 942 2349 711510458 711509052 0.000000e+00 2305.0
9 TraesCS2D01G467000 chr2A 94.538 238 13 0 43 280 711511237 711511000 4.960000e-98 368.0
10 TraesCS2D01G467000 chr2A 89.157 249 22 4 2367 2614 711508968 711508724 3.940000e-79 305.0
11 TraesCS2D01G467000 chr2A 97.101 69 2 0 570 638 711510898 711510830 1.980000e-22 117.0
12 TraesCS2D01G467000 chr2A 96.970 33 1 0 1361 1393 60760984 60760952 4.380000e-04 56.5
13 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 45079729 45079819 2.510000e-36 163.0
14 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 182436634 182436544 2.510000e-36 163.0
15 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 250401687 250401597 2.510000e-36 163.0
16 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 301689746 301689836 2.510000e-36 163.0
17 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 348814605 348814695 2.510000e-36 163.0
18 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 380937774 380937864 2.510000e-36 163.0
19 TraesCS2D01G467000 chrUn 98.901 91 1 0 2977 3067 382280826 382280736 2.510000e-36 163.0
20 TraesCS2D01G467000 chrUn 75.000 344 55 29 1273 1596 90726820 90726488 2.550000e-26 130.0
21 TraesCS2D01G467000 chrUn 75.000 344 55 29 1273 1596 90939365 90939033 2.550000e-26 130.0
22 TraesCS2D01G467000 chr6D 98.901 91 1 0 2977 3067 108511022 108510932 2.510000e-36 163.0
23 TraesCS2D01G467000 chr3D 98.901 91 1 0 2977 3067 478070816 478070906 2.510000e-36 163.0
24 TraesCS2D01G467000 chr7D 76.149 348 47 29 1273 1597 37234976 37234642 1.950000e-32 150.0
25 TraesCS2D01G467000 chr7D 80.488 123 19 4 1445 1563 478576075 478576196 4.320000e-14 89.8
26 TraesCS2D01G467000 chr1B 80.000 150 22 8 1439 1583 100308885 100309031 1.540000e-18 104.0
27 TraesCS2D01G467000 chr7B 74.894 235 52 6 1355 1584 578438787 578439019 2.000000e-17 100.0
28 TraesCS2D01G467000 chr7B 79.389 131 15 8 1440 1563 504456388 504456513 7.230000e-12 82.4
29 TraesCS2D01G467000 chr1D 79.333 150 23 8 1439 1583 62858266 62858412 7.180000e-17 99.0
30 TraesCS2D01G467000 chr1A 78.000 150 25 8 1439 1583 60955873 60955727 1.550000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G467000 chr2D 572261705 572264850 3145 True 2650.00 4782 100.0000 1 3146 2 chr2D.!!$R1 3145
1 TraesCS2D01G467000 chr2B 687226566 687229333 2767 True 924.75 2313 92.3315 14 2865 4 chr2B.!!$R3 2851
2 TraesCS2D01G467000 chr2A 711508724 711511237 2513 True 773.75 2305 94.2665 43 2614 4 chr2A.!!$R2 2571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 767 0.322187 ATTTGTGGTCAGCCCCGTAC 60.322 55.0 0.00 0.0 0.0 3.67 F
870 982 0.394192 TTGCCGGCCTATCTGATGAG 59.606 55.0 26.77 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2061 0.171903 TAGTAGGCGTTGTCGAAGGC 59.828 55.0 0.00 0.0 41.36 4.35 R
2762 3003 0.179006 TGGCACACACTTGGCATGTA 60.179 50.0 5.64 0.0 46.39 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.063266 TGGTGTTCTGAACGTAATCGC 58.937 47.619 15.18 0.00 41.18 4.58
92 93 6.072119 GCTAATTAGCCACAGGTAAGTTGTTT 60.072 38.462 24.34 0.00 43.39 2.83
232 233 0.892755 GGGTGTGGATGTAGTCGACA 59.107 55.000 19.50 0.00 42.35 4.35
252 253 1.374252 CGGAACTGGAGGTCAACGG 60.374 63.158 0.00 0.00 0.00 4.44
638 639 1.817099 CGGAGCCTCATCCAACAGC 60.817 63.158 0.00 0.00 39.53 4.40
639 640 1.452833 GGAGCCTCATCCAACAGCC 60.453 63.158 0.00 0.00 39.34 4.85
687 754 6.148948 TCAATTTTCAGGCGACTTATTTGTG 58.851 36.000 0.00 0.00 40.21 3.33
689 756 2.851263 TCAGGCGACTTATTTGTGGT 57.149 45.000 0.00 0.00 40.21 4.16
697 764 1.094785 CTTATTTGTGGTCAGCCCCG 58.905 55.000 0.00 0.00 0.00 5.73
698 765 0.402504 TTATTTGTGGTCAGCCCCGT 59.597 50.000 0.00 0.00 0.00 5.28
700 767 0.322187 ATTTGTGGTCAGCCCCGTAC 60.322 55.000 0.00 0.00 0.00 3.67
712 779 1.949465 CCCCGTACTGTAAGAATGGC 58.051 55.000 2.21 0.00 37.43 4.40
738 805 0.578683 CAATGATAGTGAGCGCGGTG 59.421 55.000 18.92 0.00 0.00 4.94
751 818 0.951525 CGCGGTGGTGGTGACAAATA 60.952 55.000 0.00 0.00 46.06 1.40
753 820 1.132262 GCGGTGGTGGTGACAAATATG 59.868 52.381 0.00 0.00 46.06 1.78
795 907 7.115805 TCACTTTTACTCGTAAATGTAGCTGTG 59.884 37.037 16.01 10.57 39.70 3.66
834 946 4.565564 GCCTTTGACTACTGTTATGTACCG 59.434 45.833 0.00 0.00 0.00 4.02
839 951 2.223112 ACTACTGTTATGTACCGACGCG 60.223 50.000 3.53 3.53 0.00 6.01
844 956 2.095516 TGTTATGTACCGACGCGTTGTA 60.096 45.455 24.28 19.68 0.00 2.41
851 963 1.338973 ACCGACGCGTTGTATCCATAT 59.661 47.619 24.28 0.00 0.00 1.78
868 980 2.768253 TATTGCCGGCCTATCTGATG 57.232 50.000 26.77 0.00 0.00 3.07
869 981 1.059098 ATTGCCGGCCTATCTGATGA 58.941 50.000 26.77 0.00 0.00 2.92
870 982 0.394192 TTGCCGGCCTATCTGATGAG 59.606 55.000 26.77 0.00 0.00 2.90
871 983 1.294780 GCCGGCCTATCTGATGAGG 59.705 63.158 18.11 4.86 35.78 3.86
884 996 7.336427 CCTATCTGATGAGGCAAGATAAAATCC 59.664 40.741 0.00 0.00 0.00 3.01
885 997 5.059161 TCTGATGAGGCAAGATAAAATCCG 58.941 41.667 0.00 0.00 0.00 4.18
887 999 5.436175 TGATGAGGCAAGATAAAATCCGAA 58.564 37.500 0.00 0.00 0.00 4.30
888 1000 5.528690 TGATGAGGCAAGATAAAATCCGAAG 59.471 40.000 0.00 0.00 0.00 3.79
889 1001 5.097742 TGAGGCAAGATAAAATCCGAAGA 57.902 39.130 0.00 0.00 0.00 2.87
890 1002 5.496556 TGAGGCAAGATAAAATCCGAAGAA 58.503 37.500 0.00 0.00 0.00 2.52
892 1004 6.432783 TGAGGCAAGATAAAATCCGAAGAAAA 59.567 34.615 0.00 0.00 0.00 2.29
893 1005 7.040062 TGAGGCAAGATAAAATCCGAAGAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
894 1006 7.315890 AGGCAAGATAAAATCCGAAGAAAAAG 58.684 34.615 0.00 0.00 0.00 2.27
895 1007 7.176690 AGGCAAGATAAAATCCGAAGAAAAAGA 59.823 33.333 0.00 0.00 0.00 2.52
896 1008 7.812669 GGCAAGATAAAATCCGAAGAAAAAGAA 59.187 33.333 0.00 0.00 0.00 2.52
897 1009 9.191995 GCAAGATAAAATCCGAAGAAAAAGAAA 57.808 29.630 0.00 0.00 0.00 2.52
901 1013 9.958285 GATAAAATCCGAAGAAAAAGAAATTGC 57.042 29.630 0.00 0.00 0.00 3.56
902 1014 6.452244 AAATCCGAAGAAAAAGAAATTGCG 57.548 33.333 0.00 0.00 0.00 4.85
903 1015 3.305110 TCCGAAGAAAAAGAAATTGCGC 58.695 40.909 0.00 0.00 0.00 6.09
904 1016 2.088969 CCGAAGAAAAAGAAATTGCGCG 59.911 45.455 0.00 0.00 0.00 6.86
905 1017 2.469024 CGAAGAAAAAGAAATTGCGCGC 60.469 45.455 27.26 27.26 0.00 6.86
922 1034 1.222113 GCCCCAGCCTCTCTTGTAC 59.778 63.158 0.00 0.00 0.00 2.90
924 1036 0.539051 CCCCAGCCTCTCTTGTACAG 59.461 60.000 0.00 0.00 0.00 2.74
925 1037 1.270907 CCCAGCCTCTCTTGTACAGT 58.729 55.000 0.00 0.00 0.00 3.55
926 1038 2.457598 CCCAGCCTCTCTTGTACAGTA 58.542 52.381 0.00 0.00 0.00 2.74
927 1039 3.034635 CCCAGCCTCTCTTGTACAGTAT 58.965 50.000 0.00 0.00 0.00 2.12
928 1040 4.215908 CCCAGCCTCTCTTGTACAGTATA 58.784 47.826 0.00 0.00 0.00 1.47
929 1041 4.038162 CCCAGCCTCTCTTGTACAGTATAC 59.962 50.000 0.00 0.00 0.00 1.47
930 1042 4.645136 CCAGCCTCTCTTGTACAGTATACA 59.355 45.833 5.50 0.00 0.00 2.29
931 1043 5.303078 CCAGCCTCTCTTGTACAGTATACAT 59.697 44.000 5.50 0.00 0.00 2.29
932 1044 6.490381 CCAGCCTCTCTTGTACAGTATACATA 59.510 42.308 5.50 0.00 0.00 2.29
933 1045 7.364200 CAGCCTCTCTTGTACAGTATACATAC 58.636 42.308 5.50 7.85 0.00 2.39
934 1046 6.490721 AGCCTCTCTTGTACAGTATACATACC 59.509 42.308 5.50 0.00 33.79 2.73
935 1047 6.264744 GCCTCTCTTGTACAGTATACATACCA 59.735 42.308 5.50 0.00 33.79 3.25
936 1048 7.522399 GCCTCTCTTGTACAGTATACATACCAG 60.522 44.444 5.50 8.45 33.79 4.00
937 1049 7.720074 CCTCTCTTGTACAGTATACATACCAGA 59.280 40.741 14.93 14.93 33.79 3.86
938 1050 9.290988 CTCTCTTGTACAGTATACATACCAGAT 57.709 37.037 15.60 0.00 33.79 2.90
939 1051 9.286170 TCTCTTGTACAGTATACATACCAGATC 57.714 37.037 15.60 0.00 33.79 2.75
940 1052 8.405418 TCTTGTACAGTATACATACCAGATCC 57.595 38.462 5.50 0.00 33.79 3.36
958 1077 2.532843 TCCTACCACTTGGAGTACCAC 58.467 52.381 1.14 0.00 46.80 4.16
959 1078 2.158279 TCCTACCACTTGGAGTACCACA 60.158 50.000 1.14 0.00 46.80 4.17
1132 1251 2.031616 GCAGCAGCTGGTCAGACA 59.968 61.111 24.13 0.00 37.91 3.41
1218 1349 1.472878 CTCGGCACAGTACTTCTAGCA 59.527 52.381 0.00 0.00 0.00 3.49
2168 2299 1.277580 AAGCAGTGGATCCCCTCCTG 61.278 60.000 9.90 10.90 45.21 3.86
2371 2518 4.981806 TTTTTCGGGCCATAAGATTCAG 57.018 40.909 4.39 0.00 0.00 3.02
2373 2520 3.924114 TTCGGGCCATAAGATTCAGAA 57.076 42.857 4.39 0.00 0.00 3.02
2374 2521 4.437682 TTCGGGCCATAAGATTCAGAAT 57.562 40.909 4.39 0.00 0.00 2.40
2375 2522 4.437682 TCGGGCCATAAGATTCAGAATT 57.562 40.909 4.39 0.00 0.00 2.17
2377 2524 5.551233 TCGGGCCATAAGATTCAGAATTAG 58.449 41.667 4.39 0.00 0.00 1.73
2379 2526 6.269077 TCGGGCCATAAGATTCAGAATTAGTA 59.731 38.462 4.39 0.00 0.00 1.82
2380 2527 6.934645 CGGGCCATAAGATTCAGAATTAGTAA 59.065 38.462 4.39 0.00 0.00 2.24
2457 2695 5.061684 GCAAATACCGTAAAAGATGCCAAAC 59.938 40.000 0.00 0.00 0.00 2.93
2495 2733 3.320129 AGGTTGTACCCTTGGTGTTAGA 58.680 45.455 0.00 0.00 39.75 2.10
2500 2738 2.879103 ACCCTTGGTGTTAGACATGG 57.121 50.000 0.00 0.00 32.98 3.66
2545 2783 2.747446 GGTGAGTAAACATGCCGAACAT 59.253 45.455 0.00 0.00 40.66 2.71
2555 2793 3.508744 ATGCCGAACATGGTGATTTTC 57.491 42.857 0.00 0.00 37.70 2.29
2558 2796 3.320541 TGCCGAACATGGTGATTTTCTTT 59.679 39.130 0.00 0.00 0.00 2.52
2572 2811 9.045223 GGTGATTTTCTTTTAGAGTTTTGCAAT 57.955 29.630 0.00 0.00 0.00 3.56
2619 2858 7.373441 GTGAGTTTTCGACAACTAATTCACTTG 59.627 37.037 16.53 0.00 37.11 3.16
2620 2859 7.279090 TGAGTTTTCGACAACTAATTCACTTGA 59.721 33.333 16.53 0.00 37.11 3.02
2621 2860 7.630924 AGTTTTCGACAACTAATTCACTTGAG 58.369 34.615 15.10 0.00 35.10 3.02
2622 2861 7.280205 AGTTTTCGACAACTAATTCACTTGAGT 59.720 33.333 15.10 0.00 35.10 3.41
2623 2862 6.525121 TTCGACAACTAATTCACTTGAGTG 57.475 37.500 4.77 4.77 46.91 3.51
2626 2867 6.537301 TCGACAACTAATTCACTTGAGTGTTT 59.463 34.615 10.66 8.57 45.76 2.83
2656 2897 8.579850 AATGTTAATGATGTTCTGCCTTAGAA 57.420 30.769 0.00 0.00 43.01 2.10
2716 2957 1.666872 GTGGAGGGGAAACACGACG 60.667 63.158 0.00 0.00 40.46 5.12
2732 2973 2.127383 CGGCGTTCAAAAGCGACC 60.127 61.111 0.00 0.00 34.09 4.79
2742 2983 1.466950 CAAAAGCGACCGCCTGAAATA 59.533 47.619 11.03 0.00 43.17 1.40
2850 3091 6.575162 AACTTTGTTGTCTCAGTTTCAGTT 57.425 33.333 0.00 0.00 0.00 3.16
2857 3098 6.037062 TGTTGTCTCAGTTTCAGTTACACATG 59.963 38.462 0.00 0.00 0.00 3.21
2865 3106 5.125417 AGTTTCAGTTACACATGTGCAACTT 59.875 36.000 32.57 19.99 42.72 2.66
2866 3107 5.574891 TTCAGTTACACATGTGCAACTTT 57.425 34.783 32.57 17.00 42.72 2.66
2867 3108 5.574891 TCAGTTACACATGTGCAACTTTT 57.425 34.783 32.57 16.38 42.72 2.27
2868 3109 5.960113 TCAGTTACACATGTGCAACTTTTT 58.040 33.333 32.57 16.08 42.72 1.94
2887 3128 3.356529 TTTTTGCAGGCCCTTTTTCAA 57.643 38.095 0.00 0.00 0.00 2.69
2888 3129 2.323968 TTTGCAGGCCCTTTTTCAAC 57.676 45.000 0.00 0.00 0.00 3.18
2889 3130 1.494960 TTGCAGGCCCTTTTTCAACT 58.505 45.000 0.00 0.00 0.00 3.16
2890 3131 0.752054 TGCAGGCCCTTTTTCAACTG 59.248 50.000 0.00 0.00 0.00 3.16
2891 3132 0.033920 GCAGGCCCTTTTTCAACTGG 59.966 55.000 0.00 0.00 0.00 4.00
2892 3133 1.703411 CAGGCCCTTTTTCAACTGGA 58.297 50.000 0.00 0.00 0.00 3.86
2893 3134 2.038659 CAGGCCCTTTTTCAACTGGAA 58.961 47.619 0.00 0.00 0.00 3.53
2894 3135 2.634453 CAGGCCCTTTTTCAACTGGAAT 59.366 45.455 0.00 0.00 34.91 3.01
2895 3136 2.634453 AGGCCCTTTTTCAACTGGAATG 59.366 45.455 0.00 0.00 34.91 2.67
2896 3137 2.368548 GGCCCTTTTTCAACTGGAATGT 59.631 45.455 0.00 0.00 34.91 2.71
2897 3138 3.554960 GGCCCTTTTTCAACTGGAATGTC 60.555 47.826 0.00 0.00 34.91 3.06
2898 3139 3.321968 GCCCTTTTTCAACTGGAATGTCT 59.678 43.478 0.00 0.00 34.91 3.41
2899 3140 4.797275 GCCCTTTTTCAACTGGAATGTCTG 60.797 45.833 0.00 0.00 34.91 3.51
2900 3141 4.342092 CCCTTTTTCAACTGGAATGTCTGT 59.658 41.667 0.00 0.00 34.91 3.41
2901 3142 5.534654 CCCTTTTTCAACTGGAATGTCTGTA 59.465 40.000 0.00 0.00 34.91 2.74
2902 3143 6.294176 CCCTTTTTCAACTGGAATGTCTGTAG 60.294 42.308 0.00 0.00 34.91 2.74
2903 3144 6.486657 CCTTTTTCAACTGGAATGTCTGTAGA 59.513 38.462 0.00 0.00 34.91 2.59
2904 3145 7.175641 CCTTTTTCAACTGGAATGTCTGTAGAT 59.824 37.037 0.00 0.00 34.91 1.98
2905 3146 8.463930 TTTTTCAACTGGAATGTCTGTAGATT 57.536 30.769 0.00 0.00 34.91 2.40
2906 3147 7.439157 TTTCAACTGGAATGTCTGTAGATTG 57.561 36.000 0.00 0.00 34.91 2.67
2907 3148 6.358974 TCAACTGGAATGTCTGTAGATTGA 57.641 37.500 0.00 0.00 0.00 2.57
2908 3149 6.401394 TCAACTGGAATGTCTGTAGATTGAG 58.599 40.000 0.00 0.00 0.00 3.02
2909 3150 5.350504 ACTGGAATGTCTGTAGATTGAGG 57.649 43.478 0.00 0.00 0.00 3.86
2910 3151 4.163078 ACTGGAATGTCTGTAGATTGAGGG 59.837 45.833 0.00 0.00 0.00 4.30
2911 3152 4.104086 TGGAATGTCTGTAGATTGAGGGT 58.896 43.478 0.00 0.00 0.00 4.34
2912 3153 4.080919 TGGAATGTCTGTAGATTGAGGGTG 60.081 45.833 0.00 0.00 0.00 4.61
2913 3154 4.162320 GGAATGTCTGTAGATTGAGGGTGA 59.838 45.833 0.00 0.00 0.00 4.02
2914 3155 5.338381 GGAATGTCTGTAGATTGAGGGTGAA 60.338 44.000 0.00 0.00 0.00 3.18
2915 3156 5.762179 ATGTCTGTAGATTGAGGGTGAAA 57.238 39.130 0.00 0.00 0.00 2.69
2916 3157 5.152623 TGTCTGTAGATTGAGGGTGAAAG 57.847 43.478 0.00 0.00 0.00 2.62
2917 3158 4.838423 TGTCTGTAGATTGAGGGTGAAAGA 59.162 41.667 0.00 0.00 0.00 2.52
2918 3159 5.485353 TGTCTGTAGATTGAGGGTGAAAGAT 59.515 40.000 0.00 0.00 0.00 2.40
2919 3160 6.013379 TGTCTGTAGATTGAGGGTGAAAGATT 60.013 38.462 0.00 0.00 0.00 2.40
2920 3161 6.881602 GTCTGTAGATTGAGGGTGAAAGATTT 59.118 38.462 0.00 0.00 0.00 2.17
2921 3162 7.391833 GTCTGTAGATTGAGGGTGAAAGATTTT 59.608 37.037 0.00 0.00 0.00 1.82
2922 3163 7.944554 TCTGTAGATTGAGGGTGAAAGATTTTT 59.055 33.333 0.00 0.00 0.00 1.94
2923 3164 7.885297 TGTAGATTGAGGGTGAAAGATTTTTG 58.115 34.615 0.00 0.00 0.00 2.44
2924 3165 6.350629 AGATTGAGGGTGAAAGATTTTTGG 57.649 37.500 0.00 0.00 0.00 3.28
2925 3166 4.953940 TTGAGGGTGAAAGATTTTTGGG 57.046 40.909 0.00 0.00 0.00 4.12
2926 3167 2.632512 TGAGGGTGAAAGATTTTTGGGC 59.367 45.455 0.00 0.00 0.00 5.36
2927 3168 2.899900 GAGGGTGAAAGATTTTTGGGCT 59.100 45.455 0.00 0.00 0.00 5.19
2928 3169 3.317406 AGGGTGAAAGATTTTTGGGCTT 58.683 40.909 0.00 0.00 0.00 4.35
2929 3170 4.488770 AGGGTGAAAGATTTTTGGGCTTA 58.511 39.130 0.00 0.00 0.00 3.09
2930 3171 4.904853 AGGGTGAAAGATTTTTGGGCTTAA 59.095 37.500 0.00 0.00 0.00 1.85
2931 3172 5.012046 AGGGTGAAAGATTTTTGGGCTTAAG 59.988 40.000 0.00 0.00 0.00 1.85
2932 3173 5.221641 GGGTGAAAGATTTTTGGGCTTAAGT 60.222 40.000 4.02 0.00 0.00 2.24
2933 3174 5.926542 GGTGAAAGATTTTTGGGCTTAAGTC 59.073 40.000 4.02 0.30 0.00 3.01
2934 3175 6.239317 GGTGAAAGATTTTTGGGCTTAAGTCT 60.239 38.462 7.09 0.00 0.00 3.24
2935 3176 6.863645 GTGAAAGATTTTTGGGCTTAAGTCTC 59.136 38.462 7.09 0.00 0.00 3.36
2936 3177 5.629079 AAGATTTTTGGGCTTAAGTCTCG 57.371 39.130 7.09 0.00 0.00 4.04
2937 3178 4.906618 AGATTTTTGGGCTTAAGTCTCGA 58.093 39.130 7.09 0.00 0.00 4.04
2938 3179 5.313712 AGATTTTTGGGCTTAAGTCTCGAA 58.686 37.500 7.09 1.52 0.00 3.71
2939 3180 5.946377 AGATTTTTGGGCTTAAGTCTCGAAT 59.054 36.000 7.09 3.10 0.00 3.34
2940 3181 6.434340 AGATTTTTGGGCTTAAGTCTCGAATT 59.566 34.615 7.09 0.00 0.00 2.17
2941 3182 6.399639 TTTTTGGGCTTAAGTCTCGAATTT 57.600 33.333 7.09 0.00 0.00 1.82
2942 3183 6.399639 TTTTGGGCTTAAGTCTCGAATTTT 57.600 33.333 7.09 0.00 0.00 1.82
2943 3184 6.399639 TTTGGGCTTAAGTCTCGAATTTTT 57.600 33.333 7.09 0.00 0.00 1.94
2944 3185 5.371115 TGGGCTTAAGTCTCGAATTTTTG 57.629 39.130 7.09 0.00 0.00 2.44
2945 3186 5.067273 TGGGCTTAAGTCTCGAATTTTTGA 58.933 37.500 7.09 0.00 0.00 2.69
2946 3187 5.181245 TGGGCTTAAGTCTCGAATTTTTGAG 59.819 40.000 7.09 1.70 39.57 3.02
2947 3188 5.411669 GGGCTTAAGTCTCGAATTTTTGAGA 59.588 40.000 7.09 6.21 43.64 3.27
2948 3189 6.072673 GGGCTTAAGTCTCGAATTTTTGAGAA 60.073 38.462 7.09 0.00 46.39 2.87
2949 3190 7.018235 GGCTTAAGTCTCGAATTTTTGAGAAG 58.982 38.462 11.04 7.07 46.39 2.85
2950 3191 7.308049 GGCTTAAGTCTCGAATTTTTGAGAAGT 60.308 37.037 11.04 5.89 46.39 3.01
2951 3192 8.070769 GCTTAAGTCTCGAATTTTTGAGAAGTT 58.929 33.333 11.04 10.22 46.39 2.66
2955 3196 7.564988 AGTCTCGAATTTTTGAGAAGTTAACG 58.435 34.615 11.04 0.00 46.39 3.18
2956 3197 6.790825 GTCTCGAATTTTTGAGAAGTTAACGG 59.209 38.462 11.04 0.00 46.39 4.44
2957 3198 6.480981 TCTCGAATTTTTGAGAAGTTAACGGT 59.519 34.615 7.63 0.00 43.07 4.83
2958 3199 7.011669 TCTCGAATTTTTGAGAAGTTAACGGTT 59.988 33.333 7.63 0.00 43.07 4.44
2959 3200 7.474190 TCGAATTTTTGAGAAGTTAACGGTTT 58.526 30.769 0.00 0.00 0.00 3.27
2960 3201 7.429920 TCGAATTTTTGAGAAGTTAACGGTTTG 59.570 33.333 0.00 0.00 0.00 2.93
2961 3202 7.429920 CGAATTTTTGAGAAGTTAACGGTTTGA 59.570 33.333 0.00 0.00 0.00 2.69
2962 3203 9.244799 GAATTTTTGAGAAGTTAACGGTTTGAT 57.755 29.630 0.00 0.00 0.00 2.57
2963 3204 7.979115 TTTTTGAGAAGTTAACGGTTTGATG 57.021 32.000 0.00 0.00 0.00 3.07
2964 3205 5.682943 TTGAGAAGTTAACGGTTTGATGG 57.317 39.130 0.00 0.00 0.00 3.51
2965 3206 4.710324 TGAGAAGTTAACGGTTTGATGGT 58.290 39.130 0.00 0.00 0.00 3.55
2966 3207 5.127491 TGAGAAGTTAACGGTTTGATGGTT 58.873 37.500 0.00 0.00 0.00 3.67
2967 3208 5.591067 TGAGAAGTTAACGGTTTGATGGTTT 59.409 36.000 0.00 0.00 0.00 3.27
2968 3209 5.827666 AGAAGTTAACGGTTTGATGGTTTG 58.172 37.500 0.00 0.00 0.00 2.93
2969 3210 4.577834 AGTTAACGGTTTGATGGTTTGG 57.422 40.909 0.00 0.00 0.00 3.28
2970 3211 3.054166 GTTAACGGTTTGATGGTTTGGC 58.946 45.455 0.00 0.00 0.00 4.52
2971 3212 1.408969 AACGGTTTGATGGTTTGGCT 58.591 45.000 0.00 0.00 0.00 4.75
2972 3213 2.279935 ACGGTTTGATGGTTTGGCTA 57.720 45.000 0.00 0.00 0.00 3.93
2973 3214 2.159382 ACGGTTTGATGGTTTGGCTAG 58.841 47.619 0.00 0.00 0.00 3.42
2974 3215 1.472480 CGGTTTGATGGTTTGGCTAGG 59.528 52.381 0.00 0.00 0.00 3.02
2975 3216 2.525368 GGTTTGATGGTTTGGCTAGGT 58.475 47.619 0.00 0.00 0.00 3.08
2976 3217 2.231235 GGTTTGATGGTTTGGCTAGGTG 59.769 50.000 0.00 0.00 0.00 4.00
2977 3218 2.890945 GTTTGATGGTTTGGCTAGGTGT 59.109 45.455 0.00 0.00 0.00 4.16
2978 3219 2.969821 TGATGGTTTGGCTAGGTGTT 57.030 45.000 0.00 0.00 0.00 3.32
2979 3220 2.513753 TGATGGTTTGGCTAGGTGTTG 58.486 47.619 0.00 0.00 0.00 3.33
2980 3221 2.107378 TGATGGTTTGGCTAGGTGTTGA 59.893 45.455 0.00 0.00 0.00 3.18
2981 3222 2.738587 TGGTTTGGCTAGGTGTTGAA 57.261 45.000 0.00 0.00 0.00 2.69
2982 3223 3.237268 TGGTTTGGCTAGGTGTTGAAT 57.763 42.857 0.00 0.00 0.00 2.57
2983 3224 4.374689 TGGTTTGGCTAGGTGTTGAATA 57.625 40.909 0.00 0.00 0.00 1.75
2984 3225 4.730966 TGGTTTGGCTAGGTGTTGAATAA 58.269 39.130 0.00 0.00 0.00 1.40
2985 3226 5.141182 TGGTTTGGCTAGGTGTTGAATAAA 58.859 37.500 0.00 0.00 0.00 1.40
2986 3227 5.777732 TGGTTTGGCTAGGTGTTGAATAAAT 59.222 36.000 0.00 0.00 0.00 1.40
2987 3228 6.099341 GGTTTGGCTAGGTGTTGAATAAATG 58.901 40.000 0.00 0.00 0.00 2.32
2988 3229 6.295067 GGTTTGGCTAGGTGTTGAATAAATGT 60.295 38.462 0.00 0.00 0.00 2.71
2989 3230 6.909550 TTGGCTAGGTGTTGAATAAATGTT 57.090 33.333 0.00 0.00 0.00 2.71
2990 3231 6.509418 TGGCTAGGTGTTGAATAAATGTTC 57.491 37.500 0.00 0.00 0.00 3.18
2991 3232 6.007076 TGGCTAGGTGTTGAATAAATGTTCA 58.993 36.000 0.00 0.00 36.38 3.18
2992 3233 6.663093 TGGCTAGGTGTTGAATAAATGTTCAT 59.337 34.615 0.00 0.00 37.88 2.57
2993 3234 7.178274 TGGCTAGGTGTTGAATAAATGTTCATT 59.822 33.333 0.00 0.00 37.88 2.57
2994 3235 8.034804 GGCTAGGTGTTGAATAAATGTTCATTT 58.965 33.333 13.93 13.93 37.88 2.32
2995 3236 8.863049 GCTAGGTGTTGAATAAATGTTCATTTG 58.137 33.333 17.58 1.69 37.88 2.32
2996 3237 7.656707 AGGTGTTGAATAAATGTTCATTTGC 57.343 32.000 17.58 9.52 37.88 3.68
2997 3238 7.444299 AGGTGTTGAATAAATGTTCATTTGCT 58.556 30.769 17.58 7.15 37.88 3.91
2998 3239 7.599998 AGGTGTTGAATAAATGTTCATTTGCTC 59.400 33.333 17.58 13.98 37.88 4.26
2999 3240 7.384660 GGTGTTGAATAAATGTTCATTTGCTCA 59.615 33.333 17.58 15.74 37.88 4.26
3000 3241 8.763356 GTGTTGAATAAATGTTCATTTGCTCAA 58.237 29.630 20.18 20.18 37.88 3.02
3001 3242 8.763356 TGTTGAATAAATGTTCATTTGCTCAAC 58.237 29.630 30.00 30.00 41.12 3.18
3002 3243 7.887996 TGAATAAATGTTCATTTGCTCAACC 57.112 32.000 17.58 4.42 33.41 3.77
3003 3244 7.440198 TGAATAAATGTTCATTTGCTCAACCA 58.560 30.769 17.58 6.29 33.41 3.67
3004 3245 7.384660 TGAATAAATGTTCATTTGCTCAACCAC 59.615 33.333 17.58 3.82 33.41 4.16
3005 3246 4.669206 AATGTTCATTTGCTCAACCACA 57.331 36.364 0.00 0.00 0.00 4.17
3006 3247 3.713858 TGTTCATTTGCTCAACCACAG 57.286 42.857 0.00 0.00 0.00 3.66
3007 3248 3.286353 TGTTCATTTGCTCAACCACAGA 58.714 40.909 0.00 0.00 0.00 3.41
3008 3249 3.890756 TGTTCATTTGCTCAACCACAGAT 59.109 39.130 0.00 0.00 0.00 2.90
3009 3250 5.069318 TGTTCATTTGCTCAACCACAGATA 58.931 37.500 0.00 0.00 0.00 1.98
3010 3251 5.181811 TGTTCATTTGCTCAACCACAGATAG 59.818 40.000 0.00 0.00 0.00 2.08
3011 3252 5.164620 TCATTTGCTCAACCACAGATAGA 57.835 39.130 0.00 0.00 0.00 1.98
3012 3253 5.559770 TCATTTGCTCAACCACAGATAGAA 58.440 37.500 0.00 0.00 0.00 2.10
3013 3254 6.182627 TCATTTGCTCAACCACAGATAGAAT 58.817 36.000 0.00 0.00 0.00 2.40
3014 3255 7.337938 TCATTTGCTCAACCACAGATAGAATA 58.662 34.615 0.00 0.00 0.00 1.75
3015 3256 6.985188 TTTGCTCAACCACAGATAGAATAC 57.015 37.500 0.00 0.00 0.00 1.89
3016 3257 5.023533 TGCTCAACCACAGATAGAATACC 57.976 43.478 0.00 0.00 0.00 2.73
3017 3258 4.716784 TGCTCAACCACAGATAGAATACCT 59.283 41.667 0.00 0.00 0.00 3.08
3018 3259 5.897250 TGCTCAACCACAGATAGAATACCTA 59.103 40.000 0.00 0.00 0.00 3.08
3019 3260 6.040955 TGCTCAACCACAGATAGAATACCTAG 59.959 42.308 0.00 0.00 0.00 3.02
3020 3261 6.517529 GCTCAACCACAGATAGAATACCTAGG 60.518 46.154 7.41 7.41 0.00 3.02
3021 3262 6.441222 TCAACCACAGATAGAATACCTAGGT 58.559 40.000 20.57 20.57 0.00 3.08
3022 3263 6.550108 TCAACCACAGATAGAATACCTAGGTC 59.450 42.308 20.32 4.01 0.00 3.85
3023 3264 6.027025 ACCACAGATAGAATACCTAGGTCA 57.973 41.667 20.32 5.58 0.00 4.02
3024 3265 6.625267 ACCACAGATAGAATACCTAGGTCAT 58.375 40.000 20.32 8.57 0.00 3.06
3025 3266 6.495181 ACCACAGATAGAATACCTAGGTCATG 59.505 42.308 20.32 9.04 0.00 3.07
3026 3267 6.495181 CCACAGATAGAATACCTAGGTCATGT 59.505 42.308 20.32 9.69 0.00 3.21
3027 3268 7.309499 CCACAGATAGAATACCTAGGTCATGTC 60.309 44.444 20.32 11.47 0.00 3.06
3028 3269 7.231519 CACAGATAGAATACCTAGGTCATGTCA 59.768 40.741 20.32 0.00 0.00 3.58
3029 3270 7.952930 ACAGATAGAATACCTAGGTCATGTCAT 59.047 37.037 20.32 1.57 0.00 3.06
3030 3271 8.811017 CAGATAGAATACCTAGGTCATGTCATT 58.189 37.037 20.32 11.51 0.00 2.57
3033 3274 9.830186 ATAGAATACCTAGGTCATGTCATTAGT 57.170 33.333 20.32 5.23 0.00 2.24
3034 3275 7.957002 AGAATACCTAGGTCATGTCATTAGTG 58.043 38.462 20.32 0.00 0.00 2.74
3035 3276 6.672266 ATACCTAGGTCATGTCATTAGTGG 57.328 41.667 20.32 0.00 0.00 4.00
3036 3277 3.711704 ACCTAGGTCATGTCATTAGTGGG 59.288 47.826 9.21 0.00 0.00 4.61
3037 3278 2.717639 AGGTCATGTCATTAGTGGGC 57.282 50.000 0.00 0.00 0.00 5.36
3038 3279 1.915489 AGGTCATGTCATTAGTGGGCA 59.085 47.619 0.00 0.00 0.00 5.36
3039 3280 2.308570 AGGTCATGTCATTAGTGGGCAA 59.691 45.455 0.00 0.00 0.00 4.52
3040 3281 2.684881 GGTCATGTCATTAGTGGGCAAG 59.315 50.000 0.00 0.00 0.00 4.01
3041 3282 2.684881 GTCATGTCATTAGTGGGCAAGG 59.315 50.000 0.00 0.00 0.00 3.61
3042 3283 2.026641 CATGTCATTAGTGGGCAAGGG 58.973 52.381 0.00 0.00 0.00 3.95
3043 3284 0.331278 TGTCATTAGTGGGCAAGGGG 59.669 55.000 0.00 0.00 0.00 4.79
3044 3285 0.331616 GTCATTAGTGGGCAAGGGGT 59.668 55.000 0.00 0.00 0.00 4.95
3045 3286 0.331278 TCATTAGTGGGCAAGGGGTG 59.669 55.000 0.00 0.00 0.00 4.61
3046 3287 0.684153 CATTAGTGGGCAAGGGGTGG 60.684 60.000 0.00 0.00 0.00 4.61
3053 3294 3.077907 GCAAGGGGTGGCTACAGA 58.922 61.111 1.52 0.00 0.00 3.41
3054 3295 1.377333 GCAAGGGGTGGCTACAGAC 60.377 63.158 1.52 0.00 0.00 3.51
3055 3296 1.842381 GCAAGGGGTGGCTACAGACT 61.842 60.000 1.52 0.00 0.00 3.24
3056 3297 1.568504 CAAGGGGTGGCTACAGACTA 58.431 55.000 1.52 0.00 0.00 2.59
3057 3298 1.906574 CAAGGGGTGGCTACAGACTAA 59.093 52.381 1.52 0.00 0.00 2.24
3058 3299 2.304761 CAAGGGGTGGCTACAGACTAAA 59.695 50.000 1.52 0.00 0.00 1.85
3059 3300 2.627933 AGGGGTGGCTACAGACTAAAA 58.372 47.619 1.52 0.00 0.00 1.52
3060 3301 2.572104 AGGGGTGGCTACAGACTAAAAG 59.428 50.000 1.52 0.00 0.00 2.27
3061 3302 2.570302 GGGGTGGCTACAGACTAAAAGA 59.430 50.000 1.52 0.00 0.00 2.52
3062 3303 3.008704 GGGGTGGCTACAGACTAAAAGAA 59.991 47.826 1.52 0.00 0.00 2.52
3063 3304 4.254492 GGGTGGCTACAGACTAAAAGAAG 58.746 47.826 1.52 0.00 0.00 2.85
3064 3305 4.020485 GGGTGGCTACAGACTAAAAGAAGA 60.020 45.833 1.52 0.00 0.00 2.87
3065 3306 5.338463 GGGTGGCTACAGACTAAAAGAAGAT 60.338 44.000 1.52 0.00 0.00 2.40
3066 3307 5.813157 GGTGGCTACAGACTAAAAGAAGATC 59.187 44.000 1.52 0.00 0.00 2.75
3067 3308 6.398918 GTGGCTACAGACTAAAAGAAGATCA 58.601 40.000 0.00 0.00 0.00 2.92
3068 3309 7.044798 GTGGCTACAGACTAAAAGAAGATCAT 58.955 38.462 0.00 0.00 0.00 2.45
3069 3310 7.010923 GTGGCTACAGACTAAAAGAAGATCATG 59.989 40.741 0.00 0.00 0.00 3.07
3070 3311 7.093333 TGGCTACAGACTAAAAGAAGATCATGA 60.093 37.037 0.00 0.00 0.00 3.07
3071 3312 7.223777 GGCTACAGACTAAAAGAAGATCATGAC 59.776 40.741 0.00 0.00 0.00 3.06
3072 3313 7.978975 GCTACAGACTAAAAGAAGATCATGACT 59.021 37.037 0.00 0.00 0.00 3.41
3073 3314 9.868277 CTACAGACTAAAAGAAGATCATGACTT 57.132 33.333 0.00 3.80 0.00 3.01
3082 3323 9.784531 AAAAGAAGATCATGACTTAACTCTTCA 57.215 29.630 25.39 0.00 40.51 3.02
3083 3324 9.784531 AAAGAAGATCATGACTTAACTCTTCAA 57.215 29.630 25.39 0.00 40.51 2.69
3084 3325 9.784531 AAGAAGATCATGACTTAACTCTTCAAA 57.215 29.630 25.39 0.00 40.51 2.69
3085 3326 9.784531 AGAAGATCATGACTTAACTCTTCAAAA 57.215 29.630 25.39 0.00 40.51 2.44
3086 3327 9.818796 GAAGATCATGACTTAACTCTTCAAAAC 57.181 33.333 21.48 3.31 38.81 2.43
3087 3328 8.908786 AGATCATGACTTAACTCTTCAAAACA 57.091 30.769 0.00 0.00 0.00 2.83
3088 3329 9.342308 AGATCATGACTTAACTCTTCAAAACAA 57.658 29.630 0.00 0.00 0.00 2.83
3114 3355 7.754851 TTTTTCGAGGAGTTAGCCTTTATTT 57.245 32.000 0.00 0.00 38.73 1.40
3115 3356 8.851541 TTTTTCGAGGAGTTAGCCTTTATTTA 57.148 30.769 0.00 0.00 38.73 1.40
3116 3357 8.488651 TTTTCGAGGAGTTAGCCTTTATTTAG 57.511 34.615 0.00 0.00 38.73 1.85
3117 3358 7.414222 TTCGAGGAGTTAGCCTTTATTTAGA 57.586 36.000 0.00 0.00 38.73 2.10
3118 3359 7.040473 TCGAGGAGTTAGCCTTTATTTAGAG 57.960 40.000 0.00 0.00 38.73 2.43
3119 3360 6.606395 TCGAGGAGTTAGCCTTTATTTAGAGT 59.394 38.462 0.00 0.00 38.73 3.24
3120 3361 7.123847 TCGAGGAGTTAGCCTTTATTTAGAGTT 59.876 37.037 0.00 0.00 38.73 3.01
3121 3362 7.764901 CGAGGAGTTAGCCTTTATTTAGAGTTT 59.235 37.037 0.00 0.00 38.73 2.66
3140 3381 7.740805 AGAGTTTAATTAGAGATGCCCTAAGG 58.259 38.462 0.00 0.00 30.61 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.453393 TCAGAACACCAAAATCTTCTCTACAT 58.547 34.615 0.00 0.00 0.00 2.29
2 3 7.569591 CGTTCAGAACACCAAAATCTTCTCTAC 60.570 40.741 13.82 0.00 0.00 2.59
3 4 6.423905 CGTTCAGAACACCAAAATCTTCTCTA 59.576 38.462 13.82 0.00 0.00 2.43
4 5 5.237344 CGTTCAGAACACCAAAATCTTCTCT 59.763 40.000 13.82 0.00 0.00 3.10
5 6 5.007724 ACGTTCAGAACACCAAAATCTTCTC 59.992 40.000 13.82 0.00 0.00 2.87
6 7 4.881850 ACGTTCAGAACACCAAAATCTTCT 59.118 37.500 13.82 0.00 0.00 2.85
7 8 5.169836 ACGTTCAGAACACCAAAATCTTC 57.830 39.130 13.82 0.00 0.00 2.87
8 9 6.687081 TTACGTTCAGAACACCAAAATCTT 57.313 33.333 13.82 0.00 0.00 2.40
9 10 6.347402 CGATTACGTTCAGAACACCAAAATCT 60.347 38.462 13.82 0.00 34.56 2.40
10 11 5.788531 CGATTACGTTCAGAACACCAAAATC 59.211 40.000 13.82 11.63 34.56 2.17
11 12 5.685841 CGATTACGTTCAGAACACCAAAAT 58.314 37.500 13.82 5.03 34.56 1.82
12 13 4.553156 GCGATTACGTTCAGAACACCAAAA 60.553 41.667 13.82 0.56 41.98 2.44
13 14 3.059461 GCGATTACGTTCAGAACACCAAA 60.059 43.478 13.82 2.21 41.98 3.28
14 15 2.477375 GCGATTACGTTCAGAACACCAA 59.523 45.455 13.82 4.20 41.98 3.67
15 16 2.063266 GCGATTACGTTCAGAACACCA 58.937 47.619 13.82 0.00 41.98 4.17
16 17 2.334838 AGCGATTACGTTCAGAACACC 58.665 47.619 13.82 0.00 41.98 4.16
17 18 3.916172 TGTAGCGATTACGTTCAGAACAC 59.084 43.478 13.82 1.43 41.98 3.32
18 19 4.163458 TGTAGCGATTACGTTCAGAACA 57.837 40.909 13.82 0.00 41.98 3.18
79 80 6.940298 TCTCCCAATTCTAAACAACTTACCTG 59.060 38.462 0.00 0.00 0.00 4.00
113 114 1.147153 CGCATCTTCCTTCTCCCCC 59.853 63.158 0.00 0.00 0.00 5.40
168 169 1.854227 GGCTATGACTCGTTACTGGC 58.146 55.000 0.00 0.00 0.00 4.85
232 233 0.246635 CGTTGACCTCCAGTTCCGAT 59.753 55.000 0.00 0.00 0.00 4.18
252 253 2.203084 GGCCTTCCCTCTAAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
557 558 3.730761 CGCCTGACAGCCTGCAAC 61.731 66.667 0.00 0.00 0.00 4.17
563 564 4.767255 CTCCACCGCCTGACAGCC 62.767 72.222 0.00 0.00 0.00 4.85
564 565 4.767255 CCTCCACCGCCTGACAGC 62.767 72.222 0.00 0.00 0.00 4.40
565 566 2.997315 TCCTCCACCGCCTGACAG 60.997 66.667 0.00 0.00 0.00 3.51
566 567 2.997315 CTCCTCCACCGCCTGACA 60.997 66.667 0.00 0.00 0.00 3.58
567 568 3.775654 CCTCCTCCACCGCCTGAC 61.776 72.222 0.00 0.00 0.00 3.51
573 574 1.000486 TCTTCTCCCTCCTCCACCG 60.000 63.158 0.00 0.00 0.00 4.94
575 576 2.107366 CTTCTCTTCTCCCTCCTCCAC 58.893 57.143 0.00 0.00 0.00 4.02
638 639 1.665735 CGCAAAGTCGATTTTGTGGGG 60.666 52.381 29.03 15.89 42.13 4.96
639 640 1.685302 CGCAAAGTCGATTTTGTGGG 58.315 50.000 29.03 17.77 42.13 4.61
687 754 0.175073 CTTACAGTACGGGGCTGACC 59.825 60.000 9.53 0.00 37.40 4.02
689 756 1.927487 TTCTTACAGTACGGGGCTGA 58.073 50.000 9.53 0.00 37.40 4.26
697 764 6.494893 TGTCAATTGCCATTCTTACAGTAC 57.505 37.500 0.00 0.00 0.00 2.73
698 765 7.392953 TCATTGTCAATTGCCATTCTTACAGTA 59.607 33.333 0.00 0.00 0.00 2.74
700 767 6.623486 TCATTGTCAATTGCCATTCTTACAG 58.377 36.000 0.00 0.00 0.00 2.74
712 779 4.277258 GCGCTCACTATCATTGTCAATTG 58.723 43.478 0.00 0.00 0.00 2.32
738 805 6.530019 AGGATTTTCATATTTGTCACCACC 57.470 37.500 0.00 0.00 0.00 4.61
773 840 5.121142 GCCACAGCTACATTTACGAGTAAAA 59.879 40.000 11.77 0.00 35.96 1.52
777 844 2.028476 TGCCACAGCTACATTTACGAGT 60.028 45.455 0.00 0.00 40.80 4.18
778 845 2.616960 TGCCACAGCTACATTTACGAG 58.383 47.619 0.00 0.00 40.80 4.18
779 846 2.739913 GTTGCCACAGCTACATTTACGA 59.260 45.455 0.00 0.00 43.24 3.43
780 847 3.117434 GTTGCCACAGCTACATTTACG 57.883 47.619 0.00 0.00 43.24 3.18
805 917 3.560636 ACAGTAGTCAAAGGCACAACT 57.439 42.857 0.00 0.00 0.00 3.16
844 956 2.092753 CAGATAGGCCGGCAATATGGAT 60.093 50.000 30.85 9.65 0.00 3.41
851 963 0.394192 CTCATCAGATAGGCCGGCAA 59.606 55.000 30.85 16.80 0.00 4.52
868 980 6.436843 TTTCTTCGGATTTTATCTTGCCTC 57.563 37.500 0.00 0.00 0.00 4.70
869 981 6.834168 TTTTCTTCGGATTTTATCTTGCCT 57.166 33.333 0.00 0.00 0.00 4.75
870 982 7.312899 TCTTTTTCTTCGGATTTTATCTTGCC 58.687 34.615 0.00 0.00 0.00 4.52
871 983 8.742554 TTCTTTTTCTTCGGATTTTATCTTGC 57.257 30.769 0.00 0.00 0.00 4.01
875 987 9.958285 GCAATTTCTTTTTCTTCGGATTTTATC 57.042 29.630 0.00 0.00 0.00 1.75
876 988 8.647226 CGCAATTTCTTTTTCTTCGGATTTTAT 58.353 29.630 0.00 0.00 0.00 1.40
879 991 5.107491 GCGCAATTTCTTTTTCTTCGGATTT 60.107 36.000 0.30 0.00 0.00 2.17
880 992 4.385748 GCGCAATTTCTTTTTCTTCGGATT 59.614 37.500 0.30 0.00 0.00 3.01
881 993 3.920412 GCGCAATTTCTTTTTCTTCGGAT 59.080 39.130 0.30 0.00 0.00 4.18
882 994 3.305110 GCGCAATTTCTTTTTCTTCGGA 58.695 40.909 0.30 0.00 0.00 4.55
884 996 2.469024 GCGCGCAATTTCTTTTTCTTCG 60.469 45.455 29.10 0.00 0.00 3.79
885 997 2.159973 GGCGCGCAATTTCTTTTTCTTC 60.160 45.455 34.42 5.13 0.00 2.87
887 999 1.418373 GGCGCGCAATTTCTTTTTCT 58.582 45.000 34.42 0.00 0.00 2.52
888 1000 0.438445 GGGCGCGCAATTTCTTTTTC 59.562 50.000 34.42 10.38 0.00 2.29
889 1001 0.948623 GGGGCGCGCAATTTCTTTTT 60.949 50.000 34.42 0.00 0.00 1.94
890 1002 1.374125 GGGGCGCGCAATTTCTTTT 60.374 52.632 34.42 0.00 0.00 2.27
892 1004 2.988684 TGGGGCGCGCAATTTCTT 60.989 55.556 34.42 0.00 0.00 2.52
893 1005 3.443045 CTGGGGCGCGCAATTTCT 61.443 61.111 34.42 0.00 0.00 2.52
903 1015 2.359169 TACAAGAGAGGCTGGGGCG 61.359 63.158 0.00 0.00 39.81 6.13
904 1016 1.222113 GTACAAGAGAGGCTGGGGC 59.778 63.158 0.00 0.00 37.82 5.80
905 1017 0.539051 CTGTACAAGAGAGGCTGGGG 59.461 60.000 0.00 0.00 0.00 4.96
922 1034 6.948886 AGTGGTAGGATCTGGTATGTATACTG 59.051 42.308 4.17 0.00 33.81 2.74
924 1036 7.309867 CCAAGTGGTAGGATCTGGTATGTATAC 60.310 44.444 0.00 0.00 0.00 1.47
925 1037 6.724441 CCAAGTGGTAGGATCTGGTATGTATA 59.276 42.308 0.00 0.00 0.00 1.47
926 1038 5.544176 CCAAGTGGTAGGATCTGGTATGTAT 59.456 44.000 0.00 0.00 0.00 2.29
927 1039 4.899457 CCAAGTGGTAGGATCTGGTATGTA 59.101 45.833 0.00 0.00 0.00 2.29
928 1040 3.711704 CCAAGTGGTAGGATCTGGTATGT 59.288 47.826 0.00 0.00 0.00 2.29
929 1041 3.967326 TCCAAGTGGTAGGATCTGGTATG 59.033 47.826 0.00 0.00 36.34 2.39
930 1042 4.227197 CTCCAAGTGGTAGGATCTGGTAT 58.773 47.826 0.00 0.00 36.34 2.73
931 1043 3.012502 ACTCCAAGTGGTAGGATCTGGTA 59.987 47.826 0.00 0.00 36.34 3.25
932 1044 2.225650 ACTCCAAGTGGTAGGATCTGGT 60.226 50.000 0.00 0.00 36.34 4.00
933 1045 2.472029 ACTCCAAGTGGTAGGATCTGG 58.528 52.381 0.00 0.00 36.34 3.86
934 1046 3.385111 GGTACTCCAAGTGGTAGGATCTG 59.615 52.174 0.00 0.00 36.34 2.90
935 1047 3.012502 TGGTACTCCAAGTGGTAGGATCT 59.987 47.826 0.00 0.00 41.25 2.75
936 1048 3.132467 GTGGTACTCCAAGTGGTAGGATC 59.868 52.174 0.00 0.00 46.15 3.36
937 1049 3.105283 GTGGTACTCCAAGTGGTAGGAT 58.895 50.000 0.00 0.00 46.15 3.24
938 1050 2.158279 TGTGGTACTCCAAGTGGTAGGA 60.158 50.000 0.00 0.00 46.15 2.94
939 1051 2.028385 GTGTGGTACTCCAAGTGGTAGG 60.028 54.545 0.00 0.00 46.15 3.18
940 1052 2.631062 TGTGTGGTACTCCAAGTGGTAG 59.369 50.000 0.00 0.00 46.15 3.18
958 1077 3.556633 CCAAGCTATCTATCTGGGCTGTG 60.557 52.174 0.00 0.00 33.30 3.66
959 1078 2.636893 CCAAGCTATCTATCTGGGCTGT 59.363 50.000 0.00 0.00 33.30 4.40
1218 1349 2.883026 CCCAGGCTCACTATAGCTAGT 58.117 52.381 0.00 0.00 42.37 2.57
1930 2061 0.171903 TAGTAGGCGTTGTCGAAGGC 59.828 55.000 0.00 0.00 41.36 4.35
2168 2299 0.744281 GTAGCAGAGACAGAGGAGGC 59.256 60.000 0.00 0.00 0.00 4.70
2350 2497 4.594970 TCTGAATCTTATGGCCCGAAAAA 58.405 39.130 0.00 0.00 0.00 1.94
2351 2498 4.229304 TCTGAATCTTATGGCCCGAAAA 57.771 40.909 0.00 0.00 0.00 2.29
2352 2499 3.924114 TCTGAATCTTATGGCCCGAAA 57.076 42.857 0.00 0.00 0.00 3.46
2354 2501 4.437682 AATTCTGAATCTTATGGCCCGA 57.562 40.909 0.00 0.00 0.00 5.14
2355 2502 5.308825 ACTAATTCTGAATCTTATGGCCCG 58.691 41.667 0.00 0.00 0.00 6.13
2356 2503 8.870075 ATTACTAATTCTGAATCTTATGGCCC 57.130 34.615 0.00 0.00 0.00 5.80
2357 2504 9.507329 TGATTACTAATTCTGAATCTTATGGCC 57.493 33.333 2.92 0.00 31.03 5.36
2373 2520 9.297037 GCCCAAATAGTTATGGTGATTACTAAT 57.703 33.333 0.00 0.00 34.79 1.73
2374 2521 7.722285 GGCCCAAATAGTTATGGTGATTACTAA 59.278 37.037 0.00 0.00 34.79 2.24
2375 2522 7.147284 TGGCCCAAATAGTTATGGTGATTACTA 60.147 37.037 0.00 0.00 34.79 1.82
2377 2524 5.830991 TGGCCCAAATAGTTATGGTGATTAC 59.169 40.000 0.00 0.00 34.79 1.89
2379 2526 4.877773 TGGCCCAAATAGTTATGGTGATT 58.122 39.130 0.00 0.00 34.79 2.57
2380 2527 4.534647 TGGCCCAAATAGTTATGGTGAT 57.465 40.909 0.00 0.00 34.79 3.06
2495 2733 5.867903 TTGAAGTCAATTGTTTCCCATGT 57.132 34.783 16.98 0.00 0.00 3.21
2521 2759 1.066430 TCGGCATGTTTACTCACCTCC 60.066 52.381 0.00 0.00 0.00 4.30
2545 2783 7.551585 TGCAAAACTCTAAAAGAAAATCACCA 58.448 30.769 0.00 0.00 0.00 4.17
2572 2811 9.997172 ACTCACACTCCTAATATATCATCCATA 57.003 33.333 0.00 0.00 0.00 2.74
2597 2836 7.407337 ACTCAAGTGAATTAGTTGTCGAAAAC 58.593 34.615 10.66 10.66 40.05 2.43
2626 2867 9.995003 AAGGCAGAACATCATTAACATTAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
2630 2871 9.679661 TTCTAAGGCAGAACATCATTAACATTA 57.320 29.630 0.00 0.00 38.39 1.90
2656 2897 4.895297 CCCTTGATTACCATAACATTGGCT 59.105 41.667 0.00 0.00 40.68 4.75
2716 2957 2.127383 CGGTCGCTTTTGAACGCC 60.127 61.111 0.00 0.00 42.77 5.68
2732 2973 5.567138 ACTCTTGGATTTTATTTCAGGCG 57.433 39.130 0.00 0.00 0.00 5.52
2742 2983 8.893727 GCATGTACTACAATACTCTTGGATTTT 58.106 33.333 0.00 0.00 0.00 1.82
2761 3002 0.240945 GGCACACACTTGGCATGTAC 59.759 55.000 5.64 0.00 41.65 2.90
2762 3003 0.179006 TGGCACACACTTGGCATGTA 60.179 50.000 5.64 0.00 46.39 2.29
2763 3004 1.455402 TGGCACACACTTGGCATGT 60.455 52.632 0.00 0.00 46.39 3.21
2867 3108 3.013219 GTTGAAAAAGGGCCTGCAAAAA 58.987 40.909 6.92 0.00 0.00 1.94
2868 3109 2.238395 AGTTGAAAAAGGGCCTGCAAAA 59.762 40.909 6.92 0.00 0.00 2.44
2869 3110 1.836802 AGTTGAAAAAGGGCCTGCAAA 59.163 42.857 6.92 0.00 0.00 3.68
2870 3111 1.138661 CAGTTGAAAAAGGGCCTGCAA 59.861 47.619 6.92 7.07 0.00 4.08
2871 3112 0.752054 CAGTTGAAAAAGGGCCTGCA 59.248 50.000 6.92 0.00 0.00 4.41
2872 3113 0.033920 CCAGTTGAAAAAGGGCCTGC 59.966 55.000 6.92 0.00 0.00 4.85
2873 3114 1.703411 TCCAGTTGAAAAAGGGCCTG 58.297 50.000 6.92 0.00 0.00 4.85
2874 3115 2.470057 TTCCAGTTGAAAAAGGGCCT 57.530 45.000 0.00 0.00 0.00 5.19
2875 3116 2.368548 ACATTCCAGTTGAAAAAGGGCC 59.631 45.455 0.00 0.00 36.33 5.80
2876 3117 3.321968 AGACATTCCAGTTGAAAAAGGGC 59.678 43.478 0.00 0.00 36.33 5.19
2877 3118 4.342092 ACAGACATTCCAGTTGAAAAAGGG 59.658 41.667 0.00 0.00 36.33 3.95
2878 3119 5.520376 ACAGACATTCCAGTTGAAAAAGG 57.480 39.130 0.00 0.00 36.33 3.11
2879 3120 7.496529 TCTACAGACATTCCAGTTGAAAAAG 57.503 36.000 0.00 0.00 36.33 2.27
2880 3121 8.352201 CAATCTACAGACATTCCAGTTGAAAAA 58.648 33.333 0.00 0.00 36.33 1.94
2881 3122 7.719193 TCAATCTACAGACATTCCAGTTGAAAA 59.281 33.333 0.00 0.00 36.33 2.29
2882 3123 7.223584 TCAATCTACAGACATTCCAGTTGAAA 58.776 34.615 0.00 0.00 36.33 2.69
2883 3124 6.768483 TCAATCTACAGACATTCCAGTTGAA 58.232 36.000 0.00 0.00 37.38 2.69
2884 3125 6.358974 TCAATCTACAGACATTCCAGTTGA 57.641 37.500 0.00 0.00 0.00 3.18
2885 3126 5.583854 CCTCAATCTACAGACATTCCAGTTG 59.416 44.000 0.00 0.00 0.00 3.16
2886 3127 5.338708 CCCTCAATCTACAGACATTCCAGTT 60.339 44.000 0.00 0.00 0.00 3.16
2887 3128 4.163078 CCCTCAATCTACAGACATTCCAGT 59.837 45.833 0.00 0.00 0.00 4.00
2888 3129 4.163078 ACCCTCAATCTACAGACATTCCAG 59.837 45.833 0.00 0.00 0.00 3.86
2889 3130 4.080919 CACCCTCAATCTACAGACATTCCA 60.081 45.833 0.00 0.00 0.00 3.53
2890 3131 4.162320 TCACCCTCAATCTACAGACATTCC 59.838 45.833 0.00 0.00 0.00 3.01
2891 3132 5.344743 TCACCCTCAATCTACAGACATTC 57.655 43.478 0.00 0.00 0.00 2.67
2892 3133 5.762179 TTCACCCTCAATCTACAGACATT 57.238 39.130 0.00 0.00 0.00 2.71
2893 3134 5.485353 TCTTTCACCCTCAATCTACAGACAT 59.515 40.000 0.00 0.00 0.00 3.06
2894 3135 4.838423 TCTTTCACCCTCAATCTACAGACA 59.162 41.667 0.00 0.00 0.00 3.41
2895 3136 5.407407 TCTTTCACCCTCAATCTACAGAC 57.593 43.478 0.00 0.00 0.00 3.51
2896 3137 6.627087 AATCTTTCACCCTCAATCTACAGA 57.373 37.500 0.00 0.00 0.00 3.41
2897 3138 7.693969 AAAATCTTTCACCCTCAATCTACAG 57.306 36.000 0.00 0.00 0.00 2.74
2898 3139 7.039784 CCAAAAATCTTTCACCCTCAATCTACA 60.040 37.037 0.00 0.00 0.00 2.74
2899 3140 7.315890 CCAAAAATCTTTCACCCTCAATCTAC 58.684 38.462 0.00 0.00 0.00 2.59
2900 3141 6.437162 CCCAAAAATCTTTCACCCTCAATCTA 59.563 38.462 0.00 0.00 0.00 1.98
2901 3142 5.246883 CCCAAAAATCTTTCACCCTCAATCT 59.753 40.000 0.00 0.00 0.00 2.40
2902 3143 5.482006 CCCAAAAATCTTTCACCCTCAATC 58.518 41.667 0.00 0.00 0.00 2.67
2903 3144 4.263025 GCCCAAAAATCTTTCACCCTCAAT 60.263 41.667 0.00 0.00 0.00 2.57
2904 3145 3.070878 GCCCAAAAATCTTTCACCCTCAA 59.929 43.478 0.00 0.00 0.00 3.02
2905 3146 2.632512 GCCCAAAAATCTTTCACCCTCA 59.367 45.455 0.00 0.00 0.00 3.86
2906 3147 2.899900 AGCCCAAAAATCTTTCACCCTC 59.100 45.455 0.00 0.00 0.00 4.30
2907 3148 2.976440 AGCCCAAAAATCTTTCACCCT 58.024 42.857 0.00 0.00 0.00 4.34
2908 3149 3.769739 AAGCCCAAAAATCTTTCACCC 57.230 42.857 0.00 0.00 0.00 4.61
2909 3150 5.853936 ACTTAAGCCCAAAAATCTTTCACC 58.146 37.500 1.29 0.00 0.00 4.02
2910 3151 6.749139 AGACTTAAGCCCAAAAATCTTTCAC 58.251 36.000 1.29 0.00 0.00 3.18
2911 3152 6.293955 CGAGACTTAAGCCCAAAAATCTTTCA 60.294 38.462 1.29 0.00 0.00 2.69
2912 3153 6.072673 TCGAGACTTAAGCCCAAAAATCTTTC 60.073 38.462 1.29 0.00 0.00 2.62
2913 3154 5.768164 TCGAGACTTAAGCCCAAAAATCTTT 59.232 36.000 1.29 0.00 0.00 2.52
2914 3155 5.313712 TCGAGACTTAAGCCCAAAAATCTT 58.686 37.500 1.29 0.00 0.00 2.40
2915 3156 4.906618 TCGAGACTTAAGCCCAAAAATCT 58.093 39.130 1.29 0.00 0.00 2.40
2916 3157 5.622770 TTCGAGACTTAAGCCCAAAAATC 57.377 39.130 1.29 0.00 0.00 2.17
2917 3158 6.590234 AATTCGAGACTTAAGCCCAAAAAT 57.410 33.333 1.29 0.00 0.00 1.82
2918 3159 6.399639 AAATTCGAGACTTAAGCCCAAAAA 57.600 33.333 1.29 0.00 0.00 1.94
2919 3160 6.399639 AAAATTCGAGACTTAAGCCCAAAA 57.600 33.333 1.29 0.00 0.00 2.44
2920 3161 6.039941 TCAAAAATTCGAGACTTAAGCCCAAA 59.960 34.615 1.29 0.00 0.00 3.28
2921 3162 5.533154 TCAAAAATTCGAGACTTAAGCCCAA 59.467 36.000 1.29 0.00 0.00 4.12
2922 3163 5.067273 TCAAAAATTCGAGACTTAAGCCCA 58.933 37.500 1.29 0.00 0.00 5.36
2923 3164 5.411669 TCTCAAAAATTCGAGACTTAAGCCC 59.588 40.000 1.29 0.00 33.37 5.19
2924 3165 6.481954 TCTCAAAAATTCGAGACTTAAGCC 57.518 37.500 1.29 0.00 33.37 4.35
2925 3166 7.577107 ACTTCTCAAAAATTCGAGACTTAAGC 58.423 34.615 1.29 0.00 37.99 3.09
2929 3170 8.062448 CGTTAACTTCTCAAAAATTCGAGACTT 58.938 33.333 3.71 1.54 37.99 3.01
2930 3171 7.307219 CCGTTAACTTCTCAAAAATTCGAGACT 60.307 37.037 3.71 0.00 37.99 3.24
2931 3172 6.790825 CCGTTAACTTCTCAAAAATTCGAGAC 59.209 38.462 3.71 0.00 37.99 3.36
2932 3173 6.480981 ACCGTTAACTTCTCAAAAATTCGAGA 59.519 34.615 3.71 0.00 36.50 4.04
2933 3174 6.656003 ACCGTTAACTTCTCAAAAATTCGAG 58.344 36.000 3.71 0.00 0.00 4.04
2934 3175 6.607735 ACCGTTAACTTCTCAAAAATTCGA 57.392 33.333 3.71 0.00 0.00 3.71
2935 3176 7.429920 TCAAACCGTTAACTTCTCAAAAATTCG 59.570 33.333 3.71 0.00 0.00 3.34
2936 3177 8.623310 TCAAACCGTTAACTTCTCAAAAATTC 57.377 30.769 3.71 0.00 0.00 2.17
2937 3178 9.030301 CATCAAACCGTTAACTTCTCAAAAATT 57.970 29.630 3.71 0.00 0.00 1.82
2938 3179 7.651704 CCATCAAACCGTTAACTTCTCAAAAAT 59.348 33.333 3.71 0.00 0.00 1.82
2939 3180 6.975772 CCATCAAACCGTTAACTTCTCAAAAA 59.024 34.615 3.71 0.00 0.00 1.94
2940 3181 6.095720 ACCATCAAACCGTTAACTTCTCAAAA 59.904 34.615 3.71 0.00 0.00 2.44
2941 3182 5.591067 ACCATCAAACCGTTAACTTCTCAAA 59.409 36.000 3.71 0.00 0.00 2.69
2942 3183 5.127491 ACCATCAAACCGTTAACTTCTCAA 58.873 37.500 3.71 0.00 0.00 3.02
2943 3184 4.710324 ACCATCAAACCGTTAACTTCTCA 58.290 39.130 3.71 0.00 0.00 3.27
2944 3185 5.684550 AACCATCAAACCGTTAACTTCTC 57.315 39.130 3.71 0.00 0.00 2.87
2945 3186 5.221165 CCAAACCATCAAACCGTTAACTTCT 60.221 40.000 3.71 0.00 0.00 2.85
2946 3187 4.979815 CCAAACCATCAAACCGTTAACTTC 59.020 41.667 3.71 0.00 0.00 3.01
2947 3188 4.738243 GCCAAACCATCAAACCGTTAACTT 60.738 41.667 3.71 0.00 0.00 2.66
2948 3189 3.243602 GCCAAACCATCAAACCGTTAACT 60.244 43.478 3.71 0.00 0.00 2.24
2949 3190 3.054166 GCCAAACCATCAAACCGTTAAC 58.946 45.455 0.00 0.00 0.00 2.01
2950 3191 2.959707 AGCCAAACCATCAAACCGTTAA 59.040 40.909 0.00 0.00 0.00 2.01
2951 3192 2.588620 AGCCAAACCATCAAACCGTTA 58.411 42.857 0.00 0.00 0.00 3.18
2952 3193 1.408969 AGCCAAACCATCAAACCGTT 58.591 45.000 0.00 0.00 0.00 4.44
2953 3194 2.159382 CTAGCCAAACCATCAAACCGT 58.841 47.619 0.00 0.00 0.00 4.83
2954 3195 1.472480 CCTAGCCAAACCATCAAACCG 59.528 52.381 0.00 0.00 0.00 4.44
2955 3196 2.231235 CACCTAGCCAAACCATCAAACC 59.769 50.000 0.00 0.00 0.00 3.27
2956 3197 2.890945 ACACCTAGCCAAACCATCAAAC 59.109 45.455 0.00 0.00 0.00 2.93
2957 3198 3.237268 ACACCTAGCCAAACCATCAAA 57.763 42.857 0.00 0.00 0.00 2.69
2958 3199 2.890311 CAACACCTAGCCAAACCATCAA 59.110 45.455 0.00 0.00 0.00 2.57
2959 3200 2.107378 TCAACACCTAGCCAAACCATCA 59.893 45.455 0.00 0.00 0.00 3.07
2960 3201 2.790433 TCAACACCTAGCCAAACCATC 58.210 47.619 0.00 0.00 0.00 3.51
2961 3202 2.969821 TCAACACCTAGCCAAACCAT 57.030 45.000 0.00 0.00 0.00 3.55
2962 3203 2.738587 TTCAACACCTAGCCAAACCA 57.261 45.000 0.00 0.00 0.00 3.67
2963 3204 5.715434 TTTATTCAACACCTAGCCAAACC 57.285 39.130 0.00 0.00 0.00 3.27
2964 3205 6.687604 ACATTTATTCAACACCTAGCCAAAC 58.312 36.000 0.00 0.00 0.00 2.93
2965 3206 6.909550 ACATTTATTCAACACCTAGCCAAA 57.090 33.333 0.00 0.00 0.00 3.28
2966 3207 6.491745 TGAACATTTATTCAACACCTAGCCAA 59.508 34.615 0.00 0.00 35.65 4.52
2967 3208 6.007076 TGAACATTTATTCAACACCTAGCCA 58.993 36.000 0.00 0.00 35.65 4.75
2968 3209 6.509418 TGAACATTTATTCAACACCTAGCC 57.491 37.500 0.00 0.00 35.65 3.93
2969 3210 8.863049 CAAATGAACATTTATTCAACACCTAGC 58.137 33.333 11.58 0.00 41.78 3.42
2970 3211 8.863049 GCAAATGAACATTTATTCAACACCTAG 58.137 33.333 11.58 0.00 41.78 3.02
2971 3212 8.584157 AGCAAATGAACATTTATTCAACACCTA 58.416 29.630 11.58 0.00 41.78 3.08
2972 3213 7.444299 AGCAAATGAACATTTATTCAACACCT 58.556 30.769 11.58 0.00 41.78 4.00
2973 3214 7.384660 TGAGCAAATGAACATTTATTCAACACC 59.615 33.333 11.58 0.00 41.78 4.16
2974 3215 8.296799 TGAGCAAATGAACATTTATTCAACAC 57.703 30.769 11.58 1.66 41.78 3.32
2975 3216 8.763356 GTTGAGCAAATGAACATTTATTCAACA 58.237 29.630 31.30 18.58 46.39 3.33
2976 3217 8.223100 GGTTGAGCAAATGAACATTTATTCAAC 58.777 33.333 30.20 30.20 46.40 3.18
2977 3218 7.930325 TGGTTGAGCAAATGAACATTTATTCAA 59.070 29.630 21.01 21.01 41.78 2.69
2978 3219 7.384660 GTGGTTGAGCAAATGAACATTTATTCA 59.615 33.333 11.58 13.81 42.62 2.57
2979 3220 7.384660 TGTGGTTGAGCAAATGAACATTTATTC 59.615 33.333 11.58 11.95 38.84 1.75
2980 3221 7.215789 TGTGGTTGAGCAAATGAACATTTATT 58.784 30.769 11.58 4.50 38.84 1.40
2981 3222 6.757237 TGTGGTTGAGCAAATGAACATTTAT 58.243 32.000 11.58 5.06 38.84 1.40
2982 3223 6.040278 TCTGTGGTTGAGCAAATGAACATTTA 59.960 34.615 11.58 0.00 38.84 1.40
2983 3224 5.021033 TGTGGTTGAGCAAATGAACATTT 57.979 34.783 6.91 6.91 41.33 2.32
2984 3225 4.341806 TCTGTGGTTGAGCAAATGAACATT 59.658 37.500 0.00 0.00 0.00 2.71
2985 3226 3.890756 TCTGTGGTTGAGCAAATGAACAT 59.109 39.130 0.00 0.00 0.00 2.71
2986 3227 3.286353 TCTGTGGTTGAGCAAATGAACA 58.714 40.909 0.00 0.00 0.00 3.18
2987 3228 3.988379 TCTGTGGTTGAGCAAATGAAC 57.012 42.857 0.00 0.00 0.00 3.18
2988 3229 5.559770 TCTATCTGTGGTTGAGCAAATGAA 58.440 37.500 0.00 0.00 0.00 2.57
2989 3230 5.164620 TCTATCTGTGGTTGAGCAAATGA 57.835 39.130 0.00 0.00 0.00 2.57
2990 3231 5.885230 TTCTATCTGTGGTTGAGCAAATG 57.115 39.130 0.00 0.00 0.00 2.32
2991 3232 6.543831 GGTATTCTATCTGTGGTTGAGCAAAT 59.456 38.462 0.00 0.00 0.00 2.32
2992 3233 5.880332 GGTATTCTATCTGTGGTTGAGCAAA 59.120 40.000 0.00 0.00 0.00 3.68
2993 3234 5.189736 AGGTATTCTATCTGTGGTTGAGCAA 59.810 40.000 0.00 0.00 0.00 3.91
2994 3235 4.716784 AGGTATTCTATCTGTGGTTGAGCA 59.283 41.667 0.00 0.00 0.00 4.26
2995 3236 5.283457 AGGTATTCTATCTGTGGTTGAGC 57.717 43.478 0.00 0.00 0.00 4.26
2996 3237 6.551601 ACCTAGGTATTCTATCTGTGGTTGAG 59.448 42.308 14.41 0.00 0.00 3.02
2997 3238 6.441222 ACCTAGGTATTCTATCTGTGGTTGA 58.559 40.000 14.41 0.00 0.00 3.18
2998 3239 6.323996 TGACCTAGGTATTCTATCTGTGGTTG 59.676 42.308 16.29 0.00 30.73 3.77
2999 3240 6.441222 TGACCTAGGTATTCTATCTGTGGTT 58.559 40.000 16.29 0.00 30.73 3.67
3000 3241 6.027025 TGACCTAGGTATTCTATCTGTGGT 57.973 41.667 16.29 0.00 32.39 4.16
3001 3242 6.495181 ACATGACCTAGGTATTCTATCTGTGG 59.505 42.308 16.29 0.00 0.00 4.17
3002 3243 7.231519 TGACATGACCTAGGTATTCTATCTGTG 59.768 40.741 16.29 6.66 0.00 3.66
3003 3244 7.298374 TGACATGACCTAGGTATTCTATCTGT 58.702 38.462 16.29 9.28 0.00 3.41
3004 3245 7.767250 TGACATGACCTAGGTATTCTATCTG 57.233 40.000 16.29 6.23 0.00 2.90
3005 3246 8.964533 AATGACATGACCTAGGTATTCTATCT 57.035 34.615 16.29 0.00 0.00 1.98
3007 3248 9.830186 ACTAATGACATGACCTAGGTATTCTAT 57.170 33.333 16.29 2.86 0.00 1.98
3008 3249 9.078990 CACTAATGACATGACCTAGGTATTCTA 57.921 37.037 16.29 0.28 0.00 2.10
3009 3250 7.015682 CCACTAATGACATGACCTAGGTATTCT 59.984 40.741 16.29 0.00 0.00 2.40
3010 3251 7.155328 CCACTAATGACATGACCTAGGTATTC 58.845 42.308 16.29 9.31 0.00 1.75
3011 3252 6.043243 CCCACTAATGACATGACCTAGGTATT 59.957 42.308 16.29 12.22 0.00 1.89
3012 3253 5.544176 CCCACTAATGACATGACCTAGGTAT 59.456 44.000 16.29 6.24 0.00 2.73
3013 3254 4.899457 CCCACTAATGACATGACCTAGGTA 59.101 45.833 16.29 3.87 0.00 3.08
3014 3255 3.711704 CCCACTAATGACATGACCTAGGT 59.288 47.826 16.26 16.26 0.00 3.08
3015 3256 3.495100 GCCCACTAATGACATGACCTAGG 60.495 52.174 7.41 7.41 0.00 3.02
3016 3257 3.134623 TGCCCACTAATGACATGACCTAG 59.865 47.826 0.00 0.00 0.00 3.02
3017 3258 3.111484 TGCCCACTAATGACATGACCTA 58.889 45.455 0.00 0.00 0.00 3.08
3018 3259 1.915489 TGCCCACTAATGACATGACCT 59.085 47.619 0.00 0.00 0.00 3.85
3019 3260 2.418368 TGCCCACTAATGACATGACC 57.582 50.000 0.00 0.00 0.00 4.02
3020 3261 2.684881 CCTTGCCCACTAATGACATGAC 59.315 50.000 0.00 0.00 0.00 3.06
3021 3262 2.357050 CCCTTGCCCACTAATGACATGA 60.357 50.000 0.00 0.00 0.00 3.07
3022 3263 2.026641 CCCTTGCCCACTAATGACATG 58.973 52.381 0.00 0.00 0.00 3.21
3023 3264 1.063717 CCCCTTGCCCACTAATGACAT 60.064 52.381 0.00 0.00 0.00 3.06
3024 3265 0.331278 CCCCTTGCCCACTAATGACA 59.669 55.000 0.00 0.00 0.00 3.58
3025 3266 0.331616 ACCCCTTGCCCACTAATGAC 59.668 55.000 0.00 0.00 0.00 3.06
3026 3267 0.331278 CACCCCTTGCCCACTAATGA 59.669 55.000 0.00 0.00 0.00 2.57
3027 3268 0.684153 CCACCCCTTGCCCACTAATG 60.684 60.000 0.00 0.00 0.00 1.90
3028 3269 1.697297 CCACCCCTTGCCCACTAAT 59.303 57.895 0.00 0.00 0.00 1.73
3029 3270 3.176297 CCACCCCTTGCCCACTAA 58.824 61.111 0.00 0.00 0.00 2.24
3030 3271 2.774322 TAGCCACCCCTTGCCCACTA 62.774 60.000 0.00 0.00 0.00 2.74
3032 3273 3.657350 TAGCCACCCCTTGCCCAC 61.657 66.667 0.00 0.00 0.00 4.61
3033 3274 3.657350 GTAGCCACCCCTTGCCCA 61.657 66.667 0.00 0.00 0.00 5.36
3034 3275 3.645268 CTGTAGCCACCCCTTGCCC 62.645 68.421 0.00 0.00 0.00 5.36
3035 3276 2.044946 CTGTAGCCACCCCTTGCC 60.045 66.667 0.00 0.00 0.00 4.52
3036 3277 1.377333 GTCTGTAGCCACCCCTTGC 60.377 63.158 0.00 0.00 0.00 4.01
3037 3278 1.568504 TAGTCTGTAGCCACCCCTTG 58.431 55.000 0.00 0.00 0.00 3.61
3038 3279 2.337359 TTAGTCTGTAGCCACCCCTT 57.663 50.000 0.00 0.00 0.00 3.95
3039 3280 2.337359 TTTAGTCTGTAGCCACCCCT 57.663 50.000 0.00 0.00 0.00 4.79
3040 3281 2.570302 TCTTTTAGTCTGTAGCCACCCC 59.430 50.000 0.00 0.00 0.00 4.95
3041 3282 3.975168 TCTTTTAGTCTGTAGCCACCC 57.025 47.619 0.00 0.00 0.00 4.61
3042 3283 5.148651 TCTTCTTTTAGTCTGTAGCCACC 57.851 43.478 0.00 0.00 0.00 4.61
3043 3284 6.398918 TGATCTTCTTTTAGTCTGTAGCCAC 58.601 40.000 0.00 0.00 0.00 5.01
3044 3285 6.605471 TGATCTTCTTTTAGTCTGTAGCCA 57.395 37.500 0.00 0.00 0.00 4.75
3045 3286 7.223777 GTCATGATCTTCTTTTAGTCTGTAGCC 59.776 40.741 0.00 0.00 0.00 3.93
3046 3287 7.978975 AGTCATGATCTTCTTTTAGTCTGTAGC 59.021 37.037 0.00 0.00 0.00 3.58
3047 3288 9.868277 AAGTCATGATCTTCTTTTAGTCTGTAG 57.132 33.333 0.00 0.00 0.00 2.74
3056 3297 9.784531 TGAAGAGTTAAGTCATGATCTTCTTTT 57.215 29.630 24.43 13.99 41.91 2.27
3057 3298 9.784531 TTGAAGAGTTAAGTCATGATCTTCTTT 57.215 29.630 24.43 8.74 41.91 2.52
3058 3299 9.784531 TTTGAAGAGTTAAGTCATGATCTTCTT 57.215 29.630 24.43 15.21 41.91 2.52
3059 3300 9.784531 TTTTGAAGAGTTAAGTCATGATCTTCT 57.215 29.630 24.43 13.51 41.91 2.85
3060 3301 9.818796 GTTTTGAAGAGTTAAGTCATGATCTTC 57.181 33.333 20.34 20.34 41.80 2.87
3061 3302 9.342308 TGTTTTGAAGAGTTAAGTCATGATCTT 57.658 29.630 12.77 6.69 0.00 2.40
3062 3303 8.908786 TGTTTTGAAGAGTTAAGTCATGATCT 57.091 30.769 12.77 0.00 0.00 2.75
3090 3331 7.754851 AAATAAAGGCTAACTCCTCGAAAAA 57.245 32.000 0.00 0.00 34.82 1.94
3091 3332 8.316214 TCTAAATAAAGGCTAACTCCTCGAAAA 58.684 33.333 0.00 0.00 34.82 2.29
3092 3333 7.844009 TCTAAATAAAGGCTAACTCCTCGAAA 58.156 34.615 0.00 0.00 34.82 3.46
3093 3334 7.123847 ACTCTAAATAAAGGCTAACTCCTCGAA 59.876 37.037 0.00 0.00 34.82 3.71
3094 3335 6.606395 ACTCTAAATAAAGGCTAACTCCTCGA 59.394 38.462 0.00 0.00 34.82 4.04
3095 3336 6.807789 ACTCTAAATAAAGGCTAACTCCTCG 58.192 40.000 0.00 0.00 34.82 4.63
3114 3355 8.871125 CCTTAGGGCATCTCTAATTAAACTCTA 58.129 37.037 0.00 0.00 0.00 2.43
3115 3356 7.202139 CCCTTAGGGCATCTCTAATTAAACTCT 60.202 40.741 3.52 0.00 35.35 3.24
3116 3357 6.937465 CCCTTAGGGCATCTCTAATTAAACTC 59.063 42.308 3.52 0.00 35.35 3.01
3117 3358 6.842676 CCCTTAGGGCATCTCTAATTAAACT 58.157 40.000 3.52 0.00 35.35 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.