Multiple sequence alignment - TraesCS2D01G466200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G466200 chr2D 100.000 3020 0 0 1 3020 571925620 571928639 0.000000e+00 5578.0
1 TraesCS2D01G466200 chr2B 88.728 1171 52 22 962 2102 683820151 683821271 0.000000e+00 1358.0
2 TraesCS2D01G466200 chr2B 88.462 130 4 2 571 689 683819848 683819977 2.430000e-31 147.0
3 TraesCS2D01G466200 chr2B 95.652 69 2 1 565 632 683819764 683819832 3.180000e-20 110.0
4 TraesCS2D01G466200 chr2B 96.875 64 2 0 2 65 683780175 683780238 1.140000e-19 108.0
5 TraesCS2D01G466200 chr2B 93.750 64 4 0 2 65 683782544 683782607 2.480000e-16 97.1
6 TraesCS2D01G466200 chr2B 100.000 38 0 0 164 201 226468789 226468826 1.500000e-08 71.3
7 TraesCS2D01G466200 chr2A 91.730 653 37 6 62 707 710387842 710388484 0.000000e+00 891.0
8 TraesCS2D01G466200 chr2A 87.249 698 42 20 1392 2052 710388642 710389329 0.000000e+00 752.0
9 TraesCS2D01G466200 chr2A 90.339 383 35 2 2638 3020 710391692 710392072 4.490000e-138 501.0
10 TraesCS2D01G466200 chr2A 90.458 262 22 2 705 963 2486517 2486256 2.880000e-90 342.0
11 TraesCS2D01G466200 chr2A 86.283 226 20 3 2417 2642 710389599 710389813 5.030000e-58 235.0
12 TraesCS2D01G466200 chr2A 78.229 271 47 7 1076 1346 710388572 710388830 2.410000e-36 163.0
13 TraesCS2D01G466200 chr2A 93.519 108 1 3 958 1061 710388478 710388583 4.030000e-34 156.0
14 TraesCS2D01G466200 chr2A 98.462 65 1 0 1 65 710387717 710387781 6.840000e-22 115.0
15 TraesCS2D01G466200 chr2A 93.671 79 1 2 2070 2148 710389515 710389589 6.840000e-22 115.0
16 TraesCS2D01G466200 chr3D 90.074 272 19 6 703 967 42096394 42096124 2.230000e-91 346.0
17 TraesCS2D01G466200 chr3D 90.421 261 21 4 706 963 295392199 295392458 1.040000e-89 340.0
18 TraesCS2D01G466200 chr4D 90.189 265 24 2 705 967 354048751 354049015 8.020000e-91 344.0
19 TraesCS2D01G466200 chr6D 90.458 262 21 3 705 963 26353979 26354239 2.880000e-90 342.0
20 TraesCS2D01G466200 chr6D 89.455 275 24 4 705 975 388990882 388990609 2.880000e-90 342.0
21 TraesCS2D01G466200 chr7A 90.458 262 20 5 705 963 730580095 730579836 1.040000e-89 340.0
22 TraesCS2D01G466200 chr5A 89.630 270 23 4 705 970 419685933 419686201 3.730000e-89 339.0
23 TraesCS2D01G466200 chr4A 89.630 270 23 4 702 968 159363723 159363456 3.730000e-89 339.0
24 TraesCS2D01G466200 chr5B 80.128 312 47 10 2348 2653 523362846 523363148 5.070000e-53 219.0
25 TraesCS2D01G466200 chr5B 88.889 126 14 0 2438 2563 469294942 469294817 4.030000e-34 156.0
26 TraesCS2D01G466200 chr7D 89.796 98 8 2 2435 2531 101555786 101555690 1.140000e-24 124.0
27 TraesCS2D01G466200 chr3A 84.706 85 9 3 2458 2542 28863541 28863461 6.940000e-12 82.4
28 TraesCS2D01G466200 chr6A 100.000 28 0 0 2491 2518 457358049 457358022 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G466200 chr2D 571925620 571928639 3019 False 5578.000000 5578 100.000000 1 3020 1 chr2D.!!$F1 3019
1 TraesCS2D01G466200 chr2B 683819764 683821271 1507 False 538.333333 1358 90.947333 565 2102 3 chr2B.!!$F3 1537
2 TraesCS2D01G466200 chr2A 710387717 710392072 4355 False 366.000000 891 89.935250 1 3020 8 chr2A.!!$F1 3019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 164 0.543277 ATGCTTTCTCGGCTCCATGA 59.457 50.0 0.0 0.0 0.0 3.07 F
1070 1283 0.340208 TTTCTCTCTCCCTCCCTCCC 59.660 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2214 0.172127 TCACACGCAAGCAAGCAAAA 59.828 45.0 1.32 0.0 45.62 2.44 R
2296 2741 0.034059 CATACCCGGGCTCATCTGTC 59.966 60.0 24.08 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 164 0.543277 ATGCTTTCTCGGCTCCATGA 59.457 50.000 0.00 0.00 0.00 3.07
141 206 2.581354 CAGGAGCCACGAAGGAGG 59.419 66.667 2.86 0.00 41.22 4.30
158 223 0.545171 AGGAGCATGGATGTGGTCTG 59.455 55.000 0.00 0.00 44.02 3.51
194 259 1.446791 CTGCCATGGAGGAGCTCTC 59.553 63.158 18.40 9.01 41.22 3.20
216 281 2.753966 CGGCAGGAAACGATGGCTG 61.754 63.158 0.00 0.00 39.67 4.85
256 321 4.675029 ACCTTCCCGTCCAACGCG 62.675 66.667 3.53 3.53 40.91 6.01
273 338 2.970324 GTTCGCCAGCACGGTTGA 60.970 61.111 0.00 0.00 36.97 3.18
274 339 2.031919 TTCGCCAGCACGGTTGAT 59.968 55.556 0.00 0.00 36.97 2.57
276 341 4.465512 CGCCAGCACGGTTGATGC 62.466 66.667 0.00 0.00 43.74 3.91
359 431 1.761784 AGCTATCCCTCTTCACTGCAG 59.238 52.381 13.48 13.48 0.00 4.41
361 433 2.114616 CTATCCCTCTTCACTGCAGGT 58.885 52.381 19.93 0.24 0.00 4.00
363 435 1.673665 CCCTCTTCACTGCAGGTGC 60.674 63.158 19.93 0.00 44.98 5.01
395 467 2.915349 CTGGAAGGATGTGAGGATGTG 58.085 52.381 0.00 0.00 0.00 3.21
396 468 2.502947 CTGGAAGGATGTGAGGATGTGA 59.497 50.000 0.00 0.00 0.00 3.58
455 527 3.813724 GGATGAGGGTGGGGCAGG 61.814 72.222 0.00 0.00 0.00 4.85
491 563 3.274586 CGAGGCCATGGTGATGCG 61.275 66.667 14.67 6.90 0.00 4.73
525 597 0.753479 GTGAGAGGAGGCGGAGATGA 60.753 60.000 0.00 0.00 0.00 2.92
560 632 2.096248 GGGAGTCGAGAGAATGAGTGT 58.904 52.381 0.00 0.00 45.01 3.55
562 634 2.223157 GGAGTCGAGAGAATGAGTGTCG 60.223 54.545 0.00 0.00 45.01 4.35
602 674 1.185315 CGCAACCCATCCCAAAGAAT 58.815 50.000 0.00 0.00 0.00 2.40
644 805 1.150567 CTCTCTCCAATCGCAAGCCG 61.151 60.000 0.00 0.00 38.61 5.52
705 903 2.473816 CGTGTCGCTCATATTGGATGT 58.526 47.619 0.00 0.00 0.00 3.06
706 904 3.638484 CGTGTCGCTCATATTGGATGTA 58.362 45.455 0.00 0.00 0.00 2.29
707 905 3.425525 CGTGTCGCTCATATTGGATGTAC 59.574 47.826 0.00 0.00 0.00 2.90
708 906 4.621991 GTGTCGCTCATATTGGATGTACT 58.378 43.478 0.00 0.00 0.00 2.73
709 907 4.681942 GTGTCGCTCATATTGGATGTACTC 59.318 45.833 0.00 0.00 0.00 2.59
710 908 4.238514 GTCGCTCATATTGGATGTACTCC 58.761 47.826 0.00 0.00 45.19 3.85
711 909 3.258372 TCGCTCATATTGGATGTACTCCC 59.742 47.826 8.36 3.66 44.23 4.30
712 910 3.259374 CGCTCATATTGGATGTACTCCCT 59.741 47.826 8.36 0.99 44.23 4.20
713 911 4.262635 CGCTCATATTGGATGTACTCCCTT 60.263 45.833 8.36 0.86 44.23 3.95
714 912 5.241662 GCTCATATTGGATGTACTCCCTTC 58.758 45.833 8.36 0.00 44.23 3.46
715 913 5.468540 TCATATTGGATGTACTCCCTTCG 57.531 43.478 8.36 0.00 44.23 3.79
716 914 4.899457 TCATATTGGATGTACTCCCTTCGT 59.101 41.667 8.36 0.00 44.23 3.85
717 915 5.365605 TCATATTGGATGTACTCCCTTCGTT 59.634 40.000 8.36 0.00 44.23 3.85
718 916 4.569719 ATTGGATGTACTCCCTTCGTTT 57.430 40.909 8.36 0.00 44.23 3.60
719 917 4.360951 TTGGATGTACTCCCTTCGTTTT 57.639 40.909 8.36 0.00 44.23 2.43
720 918 4.360951 TGGATGTACTCCCTTCGTTTTT 57.639 40.909 8.36 0.00 44.23 1.94
743 941 6.740411 TTTACTCCGCGTATAAAATTTGGT 57.260 33.333 4.92 0.00 0.00 3.67
744 942 4.870221 ACTCCGCGTATAAAATTTGGTC 57.130 40.909 4.92 0.00 0.00 4.02
745 943 4.255301 ACTCCGCGTATAAAATTTGGTCA 58.745 39.130 4.92 0.00 0.00 4.02
746 944 4.696402 ACTCCGCGTATAAAATTTGGTCAA 59.304 37.500 4.92 0.00 0.00 3.18
747 945 5.181622 ACTCCGCGTATAAAATTTGGTCAAA 59.818 36.000 4.92 0.00 34.46 2.69
748 946 5.632959 TCCGCGTATAAAATTTGGTCAAAG 58.367 37.500 4.92 0.00 33.32 2.77
749 947 5.181622 TCCGCGTATAAAATTTGGTCAAAGT 59.818 36.000 4.92 0.00 33.32 2.66
750 948 5.510323 CCGCGTATAAAATTTGGTCAAAGTC 59.490 40.000 4.92 0.00 33.32 3.01
751 949 6.081049 CGCGTATAAAATTTGGTCAAAGTCA 58.919 36.000 0.00 0.00 33.32 3.41
752 950 6.579292 CGCGTATAAAATTTGGTCAAAGTCAA 59.421 34.615 0.00 0.00 33.32 3.18
753 951 7.113684 CGCGTATAAAATTTGGTCAAAGTCAAA 59.886 33.333 0.00 0.00 37.29 2.69
754 952 8.211838 GCGTATAAAATTTGGTCAAAGTCAAAC 58.788 33.333 0.00 0.00 35.97 2.93
755 953 9.458374 CGTATAAAATTTGGTCAAAGTCAAACT 57.542 29.630 0.00 0.00 35.97 2.66
759 957 8.474006 AAAATTTGGTCAAAGTCAAACTACAC 57.526 30.769 0.00 0.00 35.97 2.90
760 958 6.767524 ATTTGGTCAAAGTCAAACTACACA 57.232 33.333 2.55 0.00 35.97 3.72
761 959 6.576662 TTTGGTCAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 0.00 3.33
762 960 6.576662 TTGGTCAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 0.00 2.83
763 961 6.576662 TGGTCAAAGTCAAACTACACAAAA 57.423 33.333 0.00 0.00 0.00 2.44
764 962 7.164230 TGGTCAAAGTCAAACTACACAAAAT 57.836 32.000 0.00 0.00 0.00 1.82
765 963 7.607250 TGGTCAAAGTCAAACTACACAAAATT 58.393 30.769 0.00 0.00 0.00 1.82
766 964 8.091449 TGGTCAAAGTCAAACTACACAAAATTT 58.909 29.630 0.00 0.00 0.00 1.82
767 965 8.379902 GGTCAAAGTCAAACTACACAAAATTTG 58.620 33.333 3.89 3.89 34.11 2.32
768 966 9.134734 GTCAAAGTCAAACTACACAAAATTTGA 57.865 29.630 13.19 0.00 38.42 2.69
849 1059 9.499479 AAAATACATTTCATGGTGCATTTAACA 57.501 25.926 0.00 0.00 33.60 2.41
851 1061 9.669887 AATACATTTCATGGTGCATTTAACAAT 57.330 25.926 0.00 0.00 33.60 2.71
854 1064 9.669887 ACATTTCATGGTGCATTTAACAATATT 57.330 25.926 0.00 0.00 33.60 1.28
925 1135 6.549912 ACCGTATAAAGTTTGACTTTGACC 57.450 37.500 14.50 3.36 46.83 4.02
926 1136 6.056884 ACCGTATAAAGTTTGACTTTGACCA 58.943 36.000 14.50 0.00 46.83 4.02
927 1137 6.543100 ACCGTATAAAGTTTGACTTTGACCAA 59.457 34.615 14.50 0.00 46.83 3.67
928 1138 7.067251 ACCGTATAAAGTTTGACTTTGACCAAA 59.933 33.333 14.50 0.00 46.83 3.28
929 1139 7.377662 CCGTATAAAGTTTGACTTTGACCAAAC 59.622 37.037 14.50 5.71 46.83 2.93
958 1168 8.904099 ATATACAGATAAAAAGAAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
959 1169 5.237236 ACAGATAAAAAGAAACGGAGGGA 57.763 39.130 0.00 0.00 0.00 4.20
995 1205 2.170434 GCGTTGCTAGCTGCTCTCC 61.170 63.158 17.23 0.00 43.37 3.71
1048 1261 4.659172 CCCGCCACCACCACACAT 62.659 66.667 0.00 0.00 0.00 3.21
1049 1262 3.055719 CCGCCACCACCACACATC 61.056 66.667 0.00 0.00 0.00 3.06
1051 1264 2.436109 GCCACCACCACACATCCT 59.564 61.111 0.00 0.00 0.00 3.24
1054 1267 1.247567 CCACCACCACACATCCTTTC 58.752 55.000 0.00 0.00 0.00 2.62
1055 1268 1.202927 CCACCACCACACATCCTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
1056 1269 2.154462 CACCACCACACATCCTTTCTC 58.846 52.381 0.00 0.00 0.00 2.87
1057 1270 2.057922 ACCACCACACATCCTTTCTCT 58.942 47.619 0.00 0.00 0.00 3.10
1058 1271 2.039084 ACCACCACACATCCTTTCTCTC 59.961 50.000 0.00 0.00 0.00 3.20
1059 1272 2.304180 CCACCACACATCCTTTCTCTCT 59.696 50.000 0.00 0.00 0.00 3.10
1060 1273 3.594134 CACCACACATCCTTTCTCTCTC 58.406 50.000 0.00 0.00 0.00 3.20
1061 1274 2.569404 ACCACACATCCTTTCTCTCTCC 59.431 50.000 0.00 0.00 0.00 3.71
1062 1275 2.093235 CCACACATCCTTTCTCTCTCCC 60.093 54.545 0.00 0.00 0.00 4.30
1063 1276 2.836981 CACACATCCTTTCTCTCTCCCT 59.163 50.000 0.00 0.00 0.00 4.20
1064 1277 3.103742 ACACATCCTTTCTCTCTCCCTC 58.896 50.000 0.00 0.00 0.00 4.30
1065 1278 2.433970 CACATCCTTTCTCTCTCCCTCC 59.566 54.545 0.00 0.00 0.00 4.30
1066 1279 2.046292 CATCCTTTCTCTCTCCCTCCC 58.954 57.143 0.00 0.00 0.00 4.30
1067 1280 1.398799 TCCTTTCTCTCTCCCTCCCT 58.601 55.000 0.00 0.00 0.00 4.20
1068 1281 1.289530 TCCTTTCTCTCTCCCTCCCTC 59.710 57.143 0.00 0.00 0.00 4.30
1069 1282 1.691163 CCTTTCTCTCTCCCTCCCTCC 60.691 61.905 0.00 0.00 0.00 4.30
1070 1283 0.340208 TTTCTCTCTCCCTCCCTCCC 59.660 60.000 0.00 0.00 0.00 4.30
1071 1284 0.556380 TTCTCTCTCCCTCCCTCCCT 60.556 60.000 0.00 0.00 0.00 4.20
1072 1285 0.996762 TCTCTCTCCCTCCCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
1073 1286 0.998945 CTCTCTCCCTCCCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
1074 1287 0.996762 TCTCTCCCTCCCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
1075 1288 2.015726 TCTCCCTCCCTCCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
1076 1289 3.036959 TCCCTCCCTCCCTCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1089 1302 2.412591 CCTCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
1140 1353 2.829914 TGCATTGATGGCGCTCCC 60.830 61.111 7.64 0.00 0.00 4.30
1189 1402 0.967887 TCCTTGAGGAGGTCGAGCTG 60.968 60.000 23.97 6.11 46.39 4.24
1240 1456 2.670148 GGGGTGGACCTGGCTACAG 61.670 68.421 0.00 0.00 44.51 2.74
1271 1487 1.303799 CCTGATGCAGACACACCAGC 61.304 60.000 0.00 0.00 32.44 4.85
1272 1488 0.604511 CTGATGCAGACACACCAGCA 60.605 55.000 0.00 0.00 41.73 4.41
1326 1542 2.202864 GCTGCGGAAGAGGCTCTC 60.203 66.667 19.03 11.12 0.00 3.20
1362 1578 1.202698 AGGCAATCTTATGACGGGAGC 60.203 52.381 0.00 0.00 31.91 4.70
1740 1985 2.496070 CCAAACTGGACGAGGTGATAGA 59.504 50.000 0.00 0.00 40.96 1.98
1803 2065 3.219176 TGAGGAAATGGATGAGGATGC 57.781 47.619 0.00 0.00 0.00 3.91
1804 2066 2.510800 TGAGGAAATGGATGAGGATGCA 59.489 45.455 0.00 0.00 33.95 3.96
1805 2067 3.139584 TGAGGAAATGGATGAGGATGCAT 59.860 43.478 0.00 0.00 42.09 3.96
1806 2068 3.497332 AGGAAATGGATGAGGATGCATG 58.503 45.455 2.46 0.00 39.57 4.06
1915 2190 3.367607 GCATGTTTTGCGTGTTAGTTCA 58.632 40.909 0.00 0.00 42.54 3.18
1934 2209 4.976224 TCATAGTTGTCGCTACTTGCTA 57.024 40.909 0.33 0.00 40.11 3.49
1939 2214 2.993899 GTTGTCGCTACTTGCTATGTGT 59.006 45.455 0.00 0.00 40.11 3.72
1953 2228 1.210870 ATGTGTTTTGCTTGCTTGCG 58.789 45.000 0.00 0.00 35.36 4.85
2001 2276 4.830046 CCATCTATCTGTACCTGTGCTAGT 59.170 45.833 0.00 0.00 0.00 2.57
2015 2291 5.881443 CCTGTGCTAGTTACTCTACTGTACT 59.119 44.000 0.00 0.00 0.00 2.73
2109 2554 3.645975 GGTTGACACACACGGCGG 61.646 66.667 13.24 2.35 0.00 6.13
2110 2555 3.645975 GTTGACACACACGGCGGG 61.646 66.667 8.04 8.04 0.00 6.13
2111 2556 3.851128 TTGACACACACGGCGGGA 61.851 61.111 19.75 0.00 0.00 5.14
2148 2593 0.882927 CCAACGGGAAGAACGCAGAA 60.883 55.000 0.00 0.00 35.59 3.02
2149 2594 1.156736 CAACGGGAAGAACGCAGAAT 58.843 50.000 0.00 0.00 34.00 2.40
2150 2595 1.135972 CAACGGGAAGAACGCAGAATG 60.136 52.381 0.00 0.00 40.87 2.67
2162 2607 3.545724 CAGAATGCCTCACAGCTGA 57.454 52.632 23.35 0.00 36.99 4.26
2163 2608 1.370609 CAGAATGCCTCACAGCTGAG 58.629 55.000 23.35 13.75 43.40 3.35
2164 2609 0.982704 AGAATGCCTCACAGCTGAGT 59.017 50.000 23.35 0.00 42.36 3.41
2165 2610 1.350351 AGAATGCCTCACAGCTGAGTT 59.650 47.619 23.35 1.74 42.36 3.01
2166 2611 1.467734 GAATGCCTCACAGCTGAGTTG 59.532 52.381 23.35 8.78 42.36 3.16
2167 2612 0.959372 ATGCCTCACAGCTGAGTTGC 60.959 55.000 23.35 18.80 42.36 4.17
2168 2613 2.675056 GCCTCACAGCTGAGTTGCG 61.675 63.158 23.35 3.01 42.36 4.85
2169 2614 2.675056 CCTCACAGCTGAGTTGCGC 61.675 63.158 23.35 0.00 42.36 6.09
2170 2615 3.008240 CTCACAGCTGAGTTGCGCG 62.008 63.158 23.35 0.00 39.43 6.86
2171 2616 4.731503 CACAGCTGAGTTGCGCGC 62.732 66.667 27.26 27.26 38.13 6.86
2172 2617 4.976925 ACAGCTGAGTTGCGCGCT 62.977 61.111 33.29 12.78 38.13 5.92
2173 2618 4.440987 CAGCTGAGTTGCGCGCTG 62.441 66.667 33.29 15.66 43.10 5.18
2191 2636 3.293702 GCAGAGAGCCGGAGAAGT 58.706 61.111 5.05 0.00 37.23 3.01
2192 2637 1.153667 GCAGAGAGCCGGAGAAGTG 60.154 63.158 5.05 0.00 37.23 3.16
2193 2638 1.882989 GCAGAGAGCCGGAGAAGTGT 61.883 60.000 5.05 0.00 37.23 3.55
2194 2639 0.108898 CAGAGAGCCGGAGAAGTGTG 60.109 60.000 5.05 0.00 0.00 3.82
2195 2640 0.540830 AGAGAGCCGGAGAAGTGTGT 60.541 55.000 5.05 0.00 0.00 3.72
2196 2641 0.389166 GAGAGCCGGAGAAGTGTGTG 60.389 60.000 5.05 0.00 0.00 3.82
2197 2642 1.115930 AGAGCCGGAGAAGTGTGTGT 61.116 55.000 5.05 0.00 0.00 3.72
2198 2643 0.946221 GAGCCGGAGAAGTGTGTGTG 60.946 60.000 5.05 0.00 0.00 3.82
2199 2644 1.227556 GCCGGAGAAGTGTGTGTGT 60.228 57.895 5.05 0.00 0.00 3.72
2200 2645 1.498865 GCCGGAGAAGTGTGTGTGTG 61.499 60.000 5.05 0.00 0.00 3.82
2201 2646 0.880278 CCGGAGAAGTGTGTGTGTGG 60.880 60.000 0.00 0.00 0.00 4.17
2202 2647 0.880278 CGGAGAAGTGTGTGTGTGGG 60.880 60.000 0.00 0.00 0.00 4.61
2203 2648 0.468226 GGAGAAGTGTGTGTGTGGGA 59.532 55.000 0.00 0.00 0.00 4.37
2204 2649 1.541233 GGAGAAGTGTGTGTGTGGGAG 60.541 57.143 0.00 0.00 0.00 4.30
2205 2650 1.139058 GAGAAGTGTGTGTGTGGGAGT 59.861 52.381 0.00 0.00 0.00 3.85
2206 2651 1.559682 AGAAGTGTGTGTGTGGGAGTT 59.440 47.619 0.00 0.00 0.00 3.01
2207 2652 1.670811 GAAGTGTGTGTGTGGGAGTTG 59.329 52.381 0.00 0.00 0.00 3.16
2208 2653 0.618458 AGTGTGTGTGTGGGAGTTGT 59.382 50.000 0.00 0.00 0.00 3.32
2209 2654 0.732571 GTGTGTGTGTGGGAGTTGTG 59.267 55.000 0.00 0.00 0.00 3.33
2210 2655 1.029408 TGTGTGTGTGGGAGTTGTGC 61.029 55.000 0.00 0.00 0.00 4.57
2211 2656 1.453015 TGTGTGTGGGAGTTGTGCC 60.453 57.895 0.00 0.00 33.79 5.01
2212 2657 1.152963 GTGTGTGGGAGTTGTGCCT 60.153 57.895 0.00 0.00 34.49 4.75
2213 2658 1.152984 TGTGTGGGAGTTGTGCCTG 60.153 57.895 0.00 0.00 34.49 4.85
2214 2659 1.898574 GTGTGGGAGTTGTGCCTGG 60.899 63.158 0.00 0.00 34.49 4.45
2215 2660 2.985847 GTGGGAGTTGTGCCTGGC 60.986 66.667 12.87 12.87 34.49 4.85
2216 2661 3.497115 TGGGAGTTGTGCCTGGCA 61.497 61.111 19.30 19.30 34.49 4.92
2217 2662 2.674380 GGGAGTTGTGCCTGGCAG 60.674 66.667 24.10 7.75 40.08 4.85
2218 2663 2.431683 GGAGTTGTGCCTGGCAGA 59.568 61.111 24.10 19.62 40.08 4.26
2219 2664 1.228245 GGAGTTGTGCCTGGCAGAA 60.228 57.895 25.47 25.47 40.08 3.02
2220 2665 1.239968 GGAGTTGTGCCTGGCAGAAG 61.240 60.000 29.09 0.41 42.23 2.85
2221 2666 1.228367 AGTTGTGCCTGGCAGAAGG 60.228 57.895 29.09 0.48 42.23 3.46
2222 2667 2.115910 TTGTGCCTGGCAGAAGGG 59.884 61.111 25.47 0.04 40.08 3.95
2223 2668 2.459969 TTGTGCCTGGCAGAAGGGA 61.460 57.895 25.47 5.47 40.08 4.20
2224 2669 2.045536 GTGCCTGGCAGAAGGGAG 60.046 66.667 24.10 0.00 40.08 4.30
2225 2670 3.333219 TGCCTGGCAGAAGGGAGG 61.333 66.667 19.30 0.00 37.84 4.30
2226 2671 4.811364 GCCTGGCAGAAGGGAGGC 62.811 72.222 17.94 5.92 44.10 4.70
2227 2672 3.013932 CCTGGCAGAAGGGAGGCT 61.014 66.667 17.94 0.00 33.28 4.58
2228 2673 1.690633 CCTGGCAGAAGGGAGGCTA 60.691 63.158 17.94 0.00 33.28 3.93
2229 2674 1.059006 CCTGGCAGAAGGGAGGCTAT 61.059 60.000 17.94 0.00 33.28 2.97
2230 2675 0.108207 CTGGCAGAAGGGAGGCTATG 59.892 60.000 9.42 0.00 0.00 2.23
2231 2676 0.621571 TGGCAGAAGGGAGGCTATGT 60.622 55.000 0.00 0.00 0.00 2.29
2232 2677 1.343985 TGGCAGAAGGGAGGCTATGTA 60.344 52.381 0.00 0.00 0.00 2.29
2233 2678 1.981495 GGCAGAAGGGAGGCTATGTAT 59.019 52.381 0.00 0.00 0.00 2.29
2234 2679 3.173965 GGCAGAAGGGAGGCTATGTATA 58.826 50.000 0.00 0.00 0.00 1.47
2235 2680 3.196685 GGCAGAAGGGAGGCTATGTATAG 59.803 52.174 0.00 0.00 0.00 1.31
2236 2681 4.090090 GCAGAAGGGAGGCTATGTATAGA 58.910 47.826 3.15 0.00 32.05 1.98
2237 2682 4.159506 GCAGAAGGGAGGCTATGTATAGAG 59.840 50.000 3.15 0.00 32.05 2.43
2238 2683 4.709397 CAGAAGGGAGGCTATGTATAGAGG 59.291 50.000 3.15 0.00 32.05 3.69
2239 2684 4.358614 AGAAGGGAGGCTATGTATAGAGGT 59.641 45.833 3.15 0.00 32.05 3.85
2240 2685 4.054359 AGGGAGGCTATGTATAGAGGTG 57.946 50.000 3.15 0.00 32.05 4.00
2241 2686 2.498078 GGGAGGCTATGTATAGAGGTGC 59.502 54.545 3.15 0.00 32.05 5.01
2242 2687 2.498078 GGAGGCTATGTATAGAGGTGCC 59.502 54.545 3.15 0.00 39.19 5.01
2243 2688 3.165875 GAGGCTATGTATAGAGGTGCCA 58.834 50.000 11.30 0.00 41.12 4.92
2244 2689 3.169099 AGGCTATGTATAGAGGTGCCAG 58.831 50.000 11.30 0.00 41.12 4.85
2245 2690 2.900546 GGCTATGTATAGAGGTGCCAGT 59.099 50.000 3.15 0.00 38.79 4.00
2246 2691 3.306364 GGCTATGTATAGAGGTGCCAGTG 60.306 52.174 3.15 0.00 38.79 3.66
2247 2692 3.322254 GCTATGTATAGAGGTGCCAGTGT 59.678 47.826 3.15 0.00 32.05 3.55
2248 2693 4.202264 GCTATGTATAGAGGTGCCAGTGTT 60.202 45.833 3.15 0.00 32.05 3.32
2249 2694 3.887621 TGTATAGAGGTGCCAGTGTTC 57.112 47.619 0.00 0.00 0.00 3.18
2250 2695 3.169908 TGTATAGAGGTGCCAGTGTTCA 58.830 45.455 0.00 0.00 0.00 3.18
2251 2696 3.774766 TGTATAGAGGTGCCAGTGTTCAT 59.225 43.478 0.00 0.00 0.00 2.57
2252 2697 3.550437 ATAGAGGTGCCAGTGTTCATC 57.450 47.619 0.00 0.00 0.00 2.92
2253 2698 1.059098 AGAGGTGCCAGTGTTCATCA 58.941 50.000 0.00 0.00 0.00 3.07
2254 2699 1.160137 GAGGTGCCAGTGTTCATCAC 58.840 55.000 0.00 0.00 46.46 3.06
2266 2711 4.161333 GTGTTCATCACAACATAAGCTGC 58.839 43.478 0.00 0.00 45.51 5.25
2267 2712 3.819902 TGTTCATCACAACATAAGCTGCA 59.180 39.130 1.02 0.00 31.08 4.41
2268 2713 4.277921 TGTTCATCACAACATAAGCTGCAA 59.722 37.500 1.02 0.00 31.08 4.08
2269 2714 4.424061 TCATCACAACATAAGCTGCAAC 57.576 40.909 1.02 0.00 0.00 4.17
2270 2715 2.967459 TCACAACATAAGCTGCAACG 57.033 45.000 1.02 0.00 0.00 4.10
2271 2716 1.069296 TCACAACATAAGCTGCAACGC 60.069 47.619 1.02 0.00 0.00 4.84
2272 2717 0.110238 ACAACATAAGCTGCAACGCG 60.110 50.000 3.53 3.53 34.40 6.01
2273 2718 0.165727 CAACATAAGCTGCAACGCGA 59.834 50.000 15.93 0.00 34.40 5.87
2274 2719 1.086696 AACATAAGCTGCAACGCGAT 58.913 45.000 15.93 0.00 34.40 4.58
2275 2720 0.374758 ACATAAGCTGCAACGCGATG 59.625 50.000 15.93 14.01 35.54 3.84
2276 2721 0.927083 CATAAGCTGCAACGCGATGC 60.927 55.000 31.40 31.40 46.58 3.91
2287 2732 2.255252 GCGATGCAGCGTTTTGGT 59.745 55.556 26.61 0.00 0.00 3.67
2293 2738 4.341502 CAGCGTTTTGGTGCCCGG 62.342 66.667 0.00 0.00 39.57 5.73
2305 2750 4.899239 GCCCGGGCGACAGATGAG 62.899 72.222 33.60 0.00 0.00 2.90
2306 2751 4.899239 CCCGGGCGACAGATGAGC 62.899 72.222 8.08 0.00 0.00 4.26
2310 2755 4.899239 GGCGACAGATGAGCCCGG 62.899 72.222 11.21 0.00 44.80 5.73
2311 2756 4.899239 GCGACAGATGAGCCCGGG 62.899 72.222 19.09 19.09 0.00 5.73
2312 2757 3.461773 CGACAGATGAGCCCGGGT 61.462 66.667 24.63 9.10 0.00 5.28
2313 2758 2.125326 CGACAGATGAGCCCGGGTA 61.125 63.158 24.63 9.73 0.00 3.69
2314 2759 1.464376 CGACAGATGAGCCCGGGTAT 61.464 60.000 24.63 14.56 0.00 2.73
2315 2760 0.034059 GACAGATGAGCCCGGGTATG 59.966 60.000 24.63 12.38 0.00 2.39
2316 2761 0.398522 ACAGATGAGCCCGGGTATGA 60.399 55.000 24.63 5.81 0.00 2.15
2317 2762 0.758734 CAGATGAGCCCGGGTATGAA 59.241 55.000 24.63 3.97 0.00 2.57
2318 2763 0.759346 AGATGAGCCCGGGTATGAAC 59.241 55.000 24.63 9.85 0.00 3.18
2319 2764 0.468226 GATGAGCCCGGGTATGAACA 59.532 55.000 24.63 13.37 0.00 3.18
2320 2765 0.916086 ATGAGCCCGGGTATGAACAA 59.084 50.000 24.63 0.00 0.00 2.83
2321 2766 0.916086 TGAGCCCGGGTATGAACAAT 59.084 50.000 24.63 0.00 0.00 2.71
2322 2767 2.120312 TGAGCCCGGGTATGAACAATA 58.880 47.619 24.63 0.00 0.00 1.90
2323 2768 2.506231 TGAGCCCGGGTATGAACAATAA 59.494 45.455 24.63 0.00 0.00 1.40
2324 2769 3.054287 TGAGCCCGGGTATGAACAATAAA 60.054 43.478 24.63 0.00 0.00 1.40
2325 2770 3.284617 AGCCCGGGTATGAACAATAAAC 58.715 45.455 24.63 0.00 0.00 2.01
2326 2771 2.359848 GCCCGGGTATGAACAATAAACC 59.640 50.000 24.63 0.00 0.00 3.27
2327 2772 3.893521 CCCGGGTATGAACAATAAACCT 58.106 45.455 14.18 0.00 0.00 3.50
2328 2773 4.274978 CCCGGGTATGAACAATAAACCTT 58.725 43.478 14.18 0.00 0.00 3.50
2329 2774 5.438833 CCCGGGTATGAACAATAAACCTTA 58.561 41.667 14.18 0.00 0.00 2.69
2330 2775 5.887035 CCCGGGTATGAACAATAAACCTTAA 59.113 40.000 14.18 0.00 0.00 1.85
2331 2776 6.377712 CCCGGGTATGAACAATAAACCTTAAA 59.622 38.462 14.18 0.00 0.00 1.52
2332 2777 7.093858 CCCGGGTATGAACAATAAACCTTAAAA 60.094 37.037 14.18 0.00 0.00 1.52
2333 2778 8.305317 CCGGGTATGAACAATAAACCTTAAAAA 58.695 33.333 0.00 0.00 0.00 1.94
2356 2801 9.573133 AAAAATAAGATAAAAACCTCAGATGCG 57.427 29.630 0.00 0.00 0.00 4.73
2357 2802 7.865706 AATAAGATAAAAACCTCAGATGCGT 57.134 32.000 0.00 0.00 0.00 5.24
2358 2803 5.551760 AAGATAAAAACCTCAGATGCGTG 57.448 39.130 0.00 0.00 0.00 5.34
2359 2804 4.832248 AGATAAAAACCTCAGATGCGTGA 58.168 39.130 0.00 0.00 0.00 4.35
2360 2805 5.431765 AGATAAAAACCTCAGATGCGTGAT 58.568 37.500 0.00 0.00 0.00 3.06
2361 2806 6.582636 AGATAAAAACCTCAGATGCGTGATA 58.417 36.000 0.00 0.00 0.00 2.15
2362 2807 7.220030 AGATAAAAACCTCAGATGCGTGATAT 58.780 34.615 0.00 0.00 0.00 1.63
2363 2808 7.716998 AGATAAAAACCTCAGATGCGTGATATT 59.283 33.333 0.00 0.00 0.00 1.28
2364 2809 6.515272 AAAAACCTCAGATGCGTGATATTT 57.485 33.333 0.00 0.00 0.00 1.40
2365 2810 5.741388 AAACCTCAGATGCGTGATATTTC 57.259 39.130 0.00 0.00 0.00 2.17
2366 2811 4.679373 ACCTCAGATGCGTGATATTTCT 57.321 40.909 0.00 0.00 0.00 2.52
2367 2812 4.375272 ACCTCAGATGCGTGATATTTCTG 58.625 43.478 0.00 0.00 36.09 3.02
2368 2813 3.186001 CCTCAGATGCGTGATATTTCTGC 59.814 47.826 0.00 0.00 35.03 4.26
2369 2814 3.795877 TCAGATGCGTGATATTTCTGCA 58.204 40.909 6.23 6.23 37.99 4.41
2370 2815 4.190772 TCAGATGCGTGATATTTCTGCAA 58.809 39.130 7.47 0.00 37.44 4.08
2371 2816 4.635324 TCAGATGCGTGATATTTCTGCAAA 59.365 37.500 7.47 0.00 37.44 3.68
2372 2817 5.297527 TCAGATGCGTGATATTTCTGCAAAT 59.702 36.000 7.47 0.00 37.44 2.32
2373 2818 5.975344 CAGATGCGTGATATTTCTGCAAATT 59.025 36.000 7.47 0.00 37.44 1.82
2374 2819 6.474427 CAGATGCGTGATATTTCTGCAAATTT 59.526 34.615 7.47 0.00 37.44 1.82
2375 2820 7.009815 CAGATGCGTGATATTTCTGCAAATTTT 59.990 33.333 7.47 0.00 37.44 1.82
2376 2821 6.392353 TGCGTGATATTTCTGCAAATTTTG 57.608 33.333 4.72 4.72 33.95 2.44
2377 2822 5.925397 TGCGTGATATTTCTGCAAATTTTGT 59.075 32.000 10.65 0.00 33.95 2.83
2378 2823 6.089283 TGCGTGATATTTCTGCAAATTTTGTC 59.911 34.615 10.65 4.25 33.95 3.18
2379 2824 6.089283 GCGTGATATTTCTGCAAATTTTGTCA 59.911 34.615 10.65 8.14 33.95 3.58
2380 2825 7.359097 GCGTGATATTTCTGCAAATTTTGTCAA 60.359 33.333 10.65 0.00 33.95 3.18
2381 2826 8.157813 CGTGATATTTCTGCAAATTTTGTCAAG 58.842 33.333 10.65 6.63 33.95 3.02
2382 2827 8.981647 GTGATATTTCTGCAAATTTTGTCAAGT 58.018 29.630 10.65 1.92 33.95 3.16
2383 2828 9.545105 TGATATTTCTGCAAATTTTGTCAAGTT 57.455 25.926 10.65 0.00 33.95 2.66
2386 2831 6.419980 TTCTGCAAATTTTGTCAAGTTTGG 57.580 33.333 19.01 9.55 39.08 3.28
2387 2832 5.728471 TCTGCAAATTTTGTCAAGTTTGGA 58.272 33.333 19.01 16.78 39.08 3.53
2388 2833 5.580297 TCTGCAAATTTTGTCAAGTTTGGAC 59.420 36.000 19.01 9.75 39.08 4.02
2389 2834 5.240891 TGCAAATTTTGTCAAGTTTGGACA 58.759 33.333 19.01 11.35 43.12 4.02
2398 2843 6.618287 TGTCAAGTTTGGACAATACAGAAG 57.382 37.500 0.00 0.00 41.96 2.85
2399 2844 5.008613 TGTCAAGTTTGGACAATACAGAAGC 59.991 40.000 0.00 0.00 41.96 3.86
2400 2845 5.239525 GTCAAGTTTGGACAATACAGAAGCT 59.760 40.000 0.00 0.00 35.36 3.74
2401 2846 5.470098 TCAAGTTTGGACAATACAGAAGCTC 59.530 40.000 0.00 0.00 0.00 4.09
2402 2847 3.997021 AGTTTGGACAATACAGAAGCTCG 59.003 43.478 0.00 0.00 0.00 5.03
2403 2848 3.678056 TTGGACAATACAGAAGCTCGT 57.322 42.857 0.00 0.00 0.00 4.18
2404 2849 2.959516 TGGACAATACAGAAGCTCGTG 58.040 47.619 0.00 0.00 0.00 4.35
2405 2850 2.271800 GGACAATACAGAAGCTCGTGG 58.728 52.381 0.00 0.00 0.00 4.94
2406 2851 2.094182 GGACAATACAGAAGCTCGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
2407 2852 3.585862 GACAATACAGAAGCTCGTGGAA 58.414 45.455 0.00 0.00 0.00 3.53
2408 2853 3.994392 GACAATACAGAAGCTCGTGGAAA 59.006 43.478 0.00 0.00 0.00 3.13
2409 2854 4.385825 ACAATACAGAAGCTCGTGGAAAA 58.614 39.130 0.00 0.00 0.00 2.29
2410 2855 4.819630 ACAATACAGAAGCTCGTGGAAAAA 59.180 37.500 0.00 0.00 0.00 1.94
2457 2902 9.603921 ATTTGAGAAACATTTGAAAACATGACT 57.396 25.926 0.00 0.00 0.00 3.41
2458 2903 7.990541 TGAGAAACATTTGAAAACATGACTG 57.009 32.000 0.00 0.00 0.00 3.51
2463 2908 8.721019 AAACATTTGAAAACATGACTGTTCAT 57.279 26.923 0.00 0.00 44.83 2.57
2474 2919 2.228582 TGACTGTTCATGCCCGAATTTG 59.771 45.455 0.00 0.00 0.00 2.32
2513 2958 3.399330 TCCTCGAATGTCCAAACTTCAC 58.601 45.455 0.00 0.00 0.00 3.18
2525 2970 6.814146 TGTCCAAACTTCACCAAATTTTGTAC 59.186 34.615 8.26 0.00 36.36 2.90
2534 2979 4.501198 CACCAAATTTTGTACGAACACCAC 59.499 41.667 8.26 0.00 34.61 4.16
2549 2994 0.890542 ACCACGCACATGCACATCTT 60.891 50.000 4.49 0.00 42.21 2.40
2551 2996 0.239082 CACGCACATGCACATCTTGT 59.761 50.000 4.49 0.00 42.21 3.16
2632 3077 2.037901 TCATCAGTCTCATCTGAGCCC 58.962 52.381 2.21 0.00 45.70 5.19
2642 3087 0.978146 ATCTGAGCCCGCACCTAAGT 60.978 55.000 0.00 0.00 0.00 2.24
2644 3089 2.125106 GAGCCCGCACCTAAGTGG 60.125 66.667 0.00 0.00 44.69 4.00
2647 3092 0.689745 AGCCCGCACCTAAGTGGATA 60.690 55.000 0.00 0.00 44.69 2.59
2649 3094 1.202770 GCCCGCACCTAAGTGGATATT 60.203 52.381 0.00 0.00 44.69 1.28
2651 3096 2.404215 CCGCACCTAAGTGGATATTCG 58.596 52.381 0.00 0.00 44.69 3.34
2652 3097 1.792949 CGCACCTAAGTGGATATTCGC 59.207 52.381 0.00 0.00 44.69 4.70
2653 3098 2.801699 CGCACCTAAGTGGATATTCGCA 60.802 50.000 0.00 0.00 44.69 5.10
2654 3099 3.202906 GCACCTAAGTGGATATTCGCAA 58.797 45.455 0.00 0.00 44.69 4.85
2655 3100 3.002348 GCACCTAAGTGGATATTCGCAAC 59.998 47.826 0.00 0.00 44.69 4.17
2656 3101 4.188462 CACCTAAGTGGATATTCGCAACA 58.812 43.478 0.00 0.00 40.55 3.33
2736 5064 4.679373 AATCGATGTCAGGTAAGCATCT 57.321 40.909 0.00 0.00 37.46 2.90
2743 5071 1.350684 TCAGGTAAGCATCTGTTGGCA 59.649 47.619 0.00 0.00 33.13 4.92
2778 5106 8.677148 AACCGATATGCTATTTTACAATCAGT 57.323 30.769 0.00 0.00 0.00 3.41
2779 5107 8.311650 ACCGATATGCTATTTTACAATCAGTC 57.688 34.615 0.00 0.00 0.00 3.51
2846 5174 0.659427 CATGATTGCGTGCTCCGATT 59.341 50.000 0.43 0.00 39.56 3.34
2863 5191 5.627172 TCCGATTGTGCTAAAAATTTCTCG 58.373 37.500 0.00 0.00 0.00 4.04
2873 5201 2.200170 AAATTTCTCGTGGGCGCTGC 62.200 55.000 7.64 0.00 38.14 5.25
2897 5225 4.407296 TGTTTTTGTTTTCTGGCCCATAGT 59.593 37.500 0.00 0.00 0.00 2.12
2901 5229 6.926630 TTTGTTTTCTGGCCCATAGTATTT 57.073 33.333 0.00 0.00 0.00 1.40
2904 5232 5.184864 TGTTTTCTGGCCCATAGTATTTGTG 59.815 40.000 0.00 0.00 0.00 3.33
2914 5242 6.542821 CCCATAGTATTTGTGTGGTATCCAT 58.457 40.000 0.00 0.00 35.28 3.41
2923 5251 4.198530 TGTGTGGTATCCATTGCATGTAG 58.801 43.478 0.00 0.00 35.28 2.74
2924 5252 4.199310 GTGTGGTATCCATTGCATGTAGT 58.801 43.478 0.00 0.00 35.28 2.73
2925 5253 4.640201 GTGTGGTATCCATTGCATGTAGTT 59.360 41.667 0.00 0.00 35.28 2.24
2926 5254 5.125417 GTGTGGTATCCATTGCATGTAGTTT 59.875 40.000 0.00 0.00 35.28 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 197 0.467384 CATCCATGCTCCTCCTTCGT 59.533 55.000 0.00 0.00 0.00 3.85
141 206 1.099879 GCCAGACCACATCCATGCTC 61.100 60.000 0.00 0.00 0.00 4.26
158 223 2.189499 GCATCAACCGGATCTGGCC 61.189 63.158 21.17 0.00 32.57 5.36
194 259 2.046314 ATCGTTTCCTGCCGGTGG 60.046 61.111 1.90 6.28 0.00 4.61
197 262 3.508840 GCCATCGTTTCCTGCCGG 61.509 66.667 0.00 0.00 0.00 6.13
216 281 2.807045 CGTGCAGTCACCTCGAGC 60.807 66.667 6.99 0.00 40.04 5.03
247 312 4.072088 CTGGCGAACGCGTTGGAC 62.072 66.667 33.70 31.95 43.06 4.02
256 321 2.325082 ATCAACCGTGCTGGCGAAC 61.325 57.895 0.00 0.00 43.94 3.95
268 333 1.452833 GGAGAGGGCAGCATCAACC 60.453 63.158 0.00 0.00 0.00 3.77
270 335 2.683465 GGGGAGAGGGCAGCATCAA 61.683 63.158 0.00 0.00 0.00 2.57
276 341 3.003173 TTGACGGGGAGAGGGCAG 61.003 66.667 0.00 0.00 0.00 4.85
277 342 3.319198 GTTGACGGGGAGAGGGCA 61.319 66.667 0.00 0.00 0.00 5.36
278 343 2.890766 TTGTTGACGGGGAGAGGGC 61.891 63.158 0.00 0.00 0.00 5.19
328 400 2.590007 GATAGCTGCGGCCACAGG 60.590 66.667 21.99 4.51 38.16 4.00
338 410 1.483827 TGCAGTGAAGAGGGATAGCTG 59.516 52.381 0.00 0.00 0.00 4.24
339 411 1.761784 CTGCAGTGAAGAGGGATAGCT 59.238 52.381 5.25 0.00 0.00 3.32
359 431 1.966451 CAGGTTTCCGGTCTGCACC 60.966 63.158 0.00 1.61 39.69 5.01
361 433 1.701031 TTCCAGGTTTCCGGTCTGCA 61.701 55.000 0.00 0.00 0.00 4.41
363 435 0.321653 CCTTCCAGGTTTCCGGTCTG 60.322 60.000 0.00 5.66 0.00 3.51
367 439 0.328258 ACATCCTTCCAGGTTTCCGG 59.672 55.000 0.00 0.00 36.53 5.14
368 440 1.003118 TCACATCCTTCCAGGTTTCCG 59.997 52.381 0.00 0.00 36.53 4.30
370 442 2.305927 TCCTCACATCCTTCCAGGTTTC 59.694 50.000 0.00 0.00 36.53 2.78
384 456 0.178906 TGTCCCCTCACATCCTCACA 60.179 55.000 0.00 0.00 0.00 3.58
387 459 0.618968 AGGTGTCCCCTCACATCCTC 60.619 60.000 0.00 0.00 40.71 3.71
388 460 1.476165 AGGTGTCCCCTCACATCCT 59.524 57.895 0.00 0.00 40.71 3.24
389 461 4.153957 AGGTGTCCCCTCACATCC 57.846 61.111 0.00 0.00 40.71 3.51
429 501 3.402681 CCCTCATCCCAGCCACGT 61.403 66.667 0.00 0.00 0.00 4.49
473 545 3.589881 GCATCACCATGGCCTCGC 61.590 66.667 13.04 6.34 0.00 5.03
542 614 2.223157 CCGACACTCATTCTCTCGACTC 60.223 54.545 0.00 0.00 0.00 3.36
560 632 0.533308 ACGCAGTAAAACCAAGCCGA 60.533 50.000 0.00 0.00 41.94 5.54
562 634 0.663269 GCACGCAGTAAAACCAAGCC 60.663 55.000 0.00 0.00 41.61 4.35
644 805 0.517316 CCACGTTGGCTTTCTACAGC 59.483 55.000 0.00 0.00 39.28 4.40
718 916 7.592051 ACCAAATTTTATACGCGGAGTAAAAA 58.408 30.769 21.01 16.23 39.04 1.94
719 917 7.094890 TGACCAAATTTTATACGCGGAGTAAAA 60.095 33.333 20.07 20.07 39.04 1.52
720 918 6.370994 TGACCAAATTTTATACGCGGAGTAAA 59.629 34.615 12.47 7.11 39.04 2.01
721 919 5.873712 TGACCAAATTTTATACGCGGAGTAA 59.126 36.000 12.47 3.37 39.04 2.24
722 920 5.417811 TGACCAAATTTTATACGCGGAGTA 58.582 37.500 12.47 0.00 40.03 2.59
723 921 4.255301 TGACCAAATTTTATACGCGGAGT 58.745 39.130 12.47 0.00 0.00 3.85
724 922 4.868450 TGACCAAATTTTATACGCGGAG 57.132 40.909 12.47 0.00 0.00 4.63
725 923 5.181622 ACTTTGACCAAATTTTATACGCGGA 59.818 36.000 12.47 0.00 0.00 5.54
726 924 5.395642 ACTTTGACCAAATTTTATACGCGG 58.604 37.500 12.47 0.00 0.00 6.46
727 925 6.081049 TGACTTTGACCAAATTTTATACGCG 58.919 36.000 3.53 3.53 0.00 6.01
728 926 7.861176 TTGACTTTGACCAAATTTTATACGC 57.139 32.000 0.00 0.00 0.00 4.42
729 927 9.458374 AGTTTGACTTTGACCAAATTTTATACG 57.542 29.630 0.00 0.00 35.14 3.06
733 931 9.575783 GTGTAGTTTGACTTTGACCAAATTTTA 57.424 29.630 0.00 0.00 35.14 1.52
734 932 8.091449 TGTGTAGTTTGACTTTGACCAAATTTT 58.909 29.630 0.00 0.00 35.14 1.82
735 933 7.607250 TGTGTAGTTTGACTTTGACCAAATTT 58.393 30.769 0.00 0.00 35.14 1.82
736 934 7.164230 TGTGTAGTTTGACTTTGACCAAATT 57.836 32.000 0.00 0.00 35.14 1.82
737 935 6.767524 TGTGTAGTTTGACTTTGACCAAAT 57.232 33.333 0.00 0.00 35.14 2.32
738 936 6.576662 TTGTGTAGTTTGACTTTGACCAAA 57.423 33.333 0.00 0.00 0.00 3.28
739 937 6.576662 TTTGTGTAGTTTGACTTTGACCAA 57.423 33.333 0.00 0.00 0.00 3.67
740 938 6.576662 TTTTGTGTAGTTTGACTTTGACCA 57.423 33.333 0.00 0.00 0.00 4.02
741 939 8.379902 CAAATTTTGTGTAGTTTGACTTTGACC 58.620 33.333 0.78 0.00 34.38 4.02
742 940 9.134734 TCAAATTTTGTGTAGTTTGACTTTGAC 57.865 29.630 8.89 0.00 36.11 3.18
749 947 9.442047 AATTTGGTCAAATTTTGTGTAGTTTGA 57.558 25.926 13.92 0.00 45.67 2.69
822 1020 9.971744 GTTAAATGCACCATGAAATGTATTTTC 57.028 29.630 18.37 12.12 44.81 2.29
823 1021 9.499479 TGTTAAATGCACCATGAAATGTATTTT 57.501 25.926 18.37 8.92 44.81 1.82
828 1026 9.669887 AATATTGTTAAATGCACCATGAAATGT 57.330 25.926 0.00 0.00 44.81 2.71
899 1109 7.377662 GGTCAAAGTCAAACTTTATACGGTTTG 59.622 37.037 17.08 17.08 45.84 2.93
900 1110 7.067251 TGGTCAAAGTCAAACTTTATACGGTTT 59.933 33.333 4.86 0.00 45.84 3.27
901 1111 6.543100 TGGTCAAAGTCAAACTTTATACGGTT 59.457 34.615 4.86 0.00 45.84 4.44
902 1112 6.056884 TGGTCAAAGTCAAACTTTATACGGT 58.943 36.000 4.86 0.00 45.84 4.83
903 1113 6.548441 TGGTCAAAGTCAAACTTTATACGG 57.452 37.500 4.86 0.00 45.84 4.02
904 1114 8.265220 GTTTGGTCAAAGTCAAACTTTATACG 57.735 34.615 4.86 0.00 45.84 3.06
932 1142 9.991906 CCCTCCGTTTCTTTTTATCTGTATATA 57.008 33.333 0.00 0.00 0.00 0.86
933 1143 8.711170 TCCCTCCGTTTCTTTTTATCTGTATAT 58.289 33.333 0.00 0.00 0.00 0.86
934 1144 8.081517 TCCCTCCGTTTCTTTTTATCTGTATA 57.918 34.615 0.00 0.00 0.00 1.47
935 1145 6.954232 TCCCTCCGTTTCTTTTTATCTGTAT 58.046 36.000 0.00 0.00 0.00 2.29
936 1146 6.013984 ACTCCCTCCGTTTCTTTTTATCTGTA 60.014 38.462 0.00 0.00 0.00 2.74
937 1147 5.221864 ACTCCCTCCGTTTCTTTTTATCTGT 60.222 40.000 0.00 0.00 0.00 3.41
938 1148 5.246307 ACTCCCTCCGTTTCTTTTTATCTG 58.754 41.667 0.00 0.00 0.00 2.90
939 1149 5.500546 ACTCCCTCCGTTTCTTTTTATCT 57.499 39.130 0.00 0.00 0.00 1.98
940 1150 7.860918 ATTACTCCCTCCGTTTCTTTTTATC 57.139 36.000 0.00 0.00 0.00 1.75
941 1151 9.338622 CATATTACTCCCTCCGTTTCTTTTTAT 57.661 33.333 0.00 0.00 0.00 1.40
942 1152 7.281549 GCATATTACTCCCTCCGTTTCTTTTTA 59.718 37.037 0.00 0.00 0.00 1.52
943 1153 6.095021 GCATATTACTCCCTCCGTTTCTTTTT 59.905 38.462 0.00 0.00 0.00 1.94
944 1154 5.589050 GCATATTACTCCCTCCGTTTCTTTT 59.411 40.000 0.00 0.00 0.00 2.27
945 1155 5.123936 GCATATTACTCCCTCCGTTTCTTT 58.876 41.667 0.00 0.00 0.00 2.52
946 1156 4.163458 TGCATATTACTCCCTCCGTTTCTT 59.837 41.667 0.00 0.00 0.00 2.52
947 1157 3.709653 TGCATATTACTCCCTCCGTTTCT 59.290 43.478 0.00 0.00 0.00 2.52
948 1158 4.058817 CTGCATATTACTCCCTCCGTTTC 58.941 47.826 0.00 0.00 0.00 2.78
949 1159 3.744530 GCTGCATATTACTCCCTCCGTTT 60.745 47.826 0.00 0.00 0.00 3.60
950 1160 2.224305 GCTGCATATTACTCCCTCCGTT 60.224 50.000 0.00 0.00 0.00 4.44
951 1161 1.344763 GCTGCATATTACTCCCTCCGT 59.655 52.381 0.00 0.00 0.00 4.69
952 1162 1.670087 CGCTGCATATTACTCCCTCCG 60.670 57.143 0.00 0.00 0.00 4.63
953 1163 1.618837 TCGCTGCATATTACTCCCTCC 59.381 52.381 0.00 0.00 0.00 4.30
954 1164 3.321497 CTTCGCTGCATATTACTCCCTC 58.679 50.000 0.00 0.00 0.00 4.30
955 1165 2.548920 GCTTCGCTGCATATTACTCCCT 60.549 50.000 0.00 0.00 0.00 4.20
956 1166 1.801178 GCTTCGCTGCATATTACTCCC 59.199 52.381 0.00 0.00 0.00 4.30
957 1167 1.457303 CGCTTCGCTGCATATTACTCC 59.543 52.381 0.00 0.00 0.00 3.85
958 1168 2.844811 CGCTTCGCTGCATATTACTC 57.155 50.000 0.00 0.00 0.00 2.59
1046 1259 2.046292 GGGAGGGAGAGAGAAAGGATG 58.954 57.143 0.00 0.00 0.00 3.51
1047 1260 1.943860 AGGGAGGGAGAGAGAAAGGAT 59.056 52.381 0.00 0.00 0.00 3.24
1048 1261 1.289530 GAGGGAGGGAGAGAGAAAGGA 59.710 57.143 0.00 0.00 0.00 3.36
1049 1262 1.691163 GGAGGGAGGGAGAGAGAAAGG 60.691 61.905 0.00 0.00 0.00 3.11
1051 1264 0.340208 GGGAGGGAGGGAGAGAGAAA 59.660 60.000 0.00 0.00 0.00 2.52
1054 1267 0.998945 AGAGGGAGGGAGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
1055 1268 0.996762 GAGAGGGAGGGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
1056 1269 1.541672 GAGAGGGAGGGAGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
1057 1270 2.015726 GGAGAGGGAGGGAGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
1058 1271 2.612251 GGAGAGGGAGGGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
1059 1272 3.036959 GGGAGAGGGAGGGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
1060 1273 3.039526 AGGGAGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
1061 1274 2.018086 AGAGGGAGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
1062 1275 0.998945 AGAGAGGGAGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
1063 1276 0.996762 GAGAGAGGGAGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
1064 1277 0.998945 AGAGAGAGGGAGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
1065 1278 0.478507 GAGAGAGAGGGAGAGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
1066 1279 1.421646 GAGAGAGAGAGGGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
1067 1280 1.010793 AGAGAGAGAGAGGGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
1068 1281 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
1069 1282 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
1070 1283 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1071 1284 3.309296 GAGAGAGAGAGAGAGAGGGAGA 58.691 54.545 0.00 0.00 0.00 3.71
1072 1285 3.041211 TGAGAGAGAGAGAGAGAGGGAG 58.959 54.545 0.00 0.00 0.00 4.30
1073 1286 3.129262 TGAGAGAGAGAGAGAGAGGGA 57.871 52.381 0.00 0.00 0.00 4.20
1074 1287 3.931907 TTGAGAGAGAGAGAGAGAGGG 57.068 52.381 0.00 0.00 0.00 4.30
1075 1288 4.588899 TGTTTGAGAGAGAGAGAGAGAGG 58.411 47.826 0.00 0.00 0.00 3.69
1076 1289 5.390885 CGTTGTTTGAGAGAGAGAGAGAGAG 60.391 48.000 0.00 0.00 0.00 3.20
1089 1302 2.812358 TGAGCTAGCGTTGTTTGAGA 57.188 45.000 9.55 0.00 0.00 3.27
1204 1417 2.954753 CTGAGCGGCGTTGTTGTCC 61.955 63.158 9.37 0.00 0.00 4.02
1205 1418 2.551270 CTGAGCGGCGTTGTTGTC 59.449 61.111 9.37 0.00 0.00 3.18
1466 1699 1.123928 GAATCCCTGATCCGTGTCCT 58.876 55.000 0.00 0.00 0.00 3.85
1818 2080 2.261671 GAGAGCGTGGCCTTCGAA 59.738 61.111 21.17 0.00 0.00 3.71
1820 2082 2.507992 CAGAGAGCGTGGCCTTCG 60.508 66.667 3.32 10.54 0.00 3.79
1911 2186 4.246409 GCAAGTAGCGACAACTATGAAC 57.754 45.455 0.00 0.00 0.00 3.18
1934 2209 1.210870 CGCAAGCAAGCAAAACACAT 58.789 45.000 1.32 0.00 0.00 3.21
1939 2214 0.172127 TCACACGCAAGCAAGCAAAA 59.828 45.000 1.32 0.00 45.62 2.44
1953 2228 6.201806 GCATAATACAGAGAGTCCAATCACAC 59.798 42.308 0.00 0.00 0.00 3.82
2109 2554 1.382009 GACCACCTCCTCCTCCTCC 60.382 68.421 0.00 0.00 0.00 4.30
2110 2555 1.755008 CGACCACCTCCTCCTCCTC 60.755 68.421 0.00 0.00 0.00 3.71
2111 2556 2.360980 CGACCACCTCCTCCTCCT 59.639 66.667 0.00 0.00 0.00 3.69
2153 2598 3.037833 CGCGCAACTCAGCTGTGA 61.038 61.111 21.96 0.00 0.00 3.58
2154 2599 4.731503 GCGCGCAACTCAGCTGTG 62.732 66.667 29.10 14.35 0.00 3.66
2155 2600 4.976925 AGCGCGCAACTCAGCTGT 62.977 61.111 35.10 4.83 38.67 4.40
2174 2619 1.153667 CACTTCTCCGGCTCTCTGC 60.154 63.158 0.00 0.00 41.94 4.26
2175 2620 0.108898 CACACTTCTCCGGCTCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
2176 2621 0.540830 ACACACTTCTCCGGCTCTCT 60.541 55.000 0.00 0.00 0.00 3.10
2177 2622 0.389166 CACACACTTCTCCGGCTCTC 60.389 60.000 0.00 0.00 0.00 3.20
2178 2623 1.115930 ACACACACTTCTCCGGCTCT 61.116 55.000 0.00 0.00 0.00 4.09
2179 2624 0.946221 CACACACACTTCTCCGGCTC 60.946 60.000 0.00 0.00 0.00 4.70
2180 2625 1.069765 CACACACACTTCTCCGGCT 59.930 57.895 0.00 0.00 0.00 5.52
2181 2626 1.227556 ACACACACACTTCTCCGGC 60.228 57.895 0.00 0.00 0.00 6.13
2182 2627 0.880278 CCACACACACACTTCTCCGG 60.880 60.000 0.00 0.00 0.00 5.14
2183 2628 0.880278 CCCACACACACACTTCTCCG 60.880 60.000 0.00 0.00 0.00 4.63
2184 2629 0.468226 TCCCACACACACACTTCTCC 59.532 55.000 0.00 0.00 0.00 3.71
2185 2630 1.139058 ACTCCCACACACACACTTCTC 59.861 52.381 0.00 0.00 0.00 2.87
2186 2631 1.204146 ACTCCCACACACACACTTCT 58.796 50.000 0.00 0.00 0.00 2.85
2187 2632 1.670811 CAACTCCCACACACACACTTC 59.329 52.381 0.00 0.00 0.00 3.01
2188 2633 1.004277 ACAACTCCCACACACACACTT 59.996 47.619 0.00 0.00 0.00 3.16
2189 2634 0.618458 ACAACTCCCACACACACACT 59.382 50.000 0.00 0.00 0.00 3.55
2190 2635 0.732571 CACAACTCCCACACACACAC 59.267 55.000 0.00 0.00 0.00 3.82
2191 2636 1.029408 GCACAACTCCCACACACACA 61.029 55.000 0.00 0.00 0.00 3.72
2192 2637 1.724582 GGCACAACTCCCACACACAC 61.725 60.000 0.00 0.00 0.00 3.82
2193 2638 1.453015 GGCACAACTCCCACACACA 60.453 57.895 0.00 0.00 0.00 3.72
2194 2639 1.152963 AGGCACAACTCCCACACAC 60.153 57.895 0.00 0.00 0.00 3.82
2195 2640 1.152984 CAGGCACAACTCCCACACA 60.153 57.895 0.00 0.00 0.00 3.72
2196 2641 1.898574 CCAGGCACAACTCCCACAC 60.899 63.158 0.00 0.00 0.00 3.82
2197 2642 2.515398 CCAGGCACAACTCCCACA 59.485 61.111 0.00 0.00 0.00 4.17
2198 2643 2.985847 GCCAGGCACAACTCCCAC 60.986 66.667 6.55 0.00 0.00 4.61
2199 2644 3.496309 CTGCCAGGCACAACTCCCA 62.496 63.158 11.22 0.00 33.79 4.37
2200 2645 2.674380 CTGCCAGGCACAACTCCC 60.674 66.667 11.22 0.00 33.79 4.30
2201 2646 1.228245 TTCTGCCAGGCACAACTCC 60.228 57.895 11.22 0.00 33.79 3.85
2202 2647 1.239968 CCTTCTGCCAGGCACAACTC 61.240 60.000 11.22 0.00 33.79 3.01
2203 2648 1.228367 CCTTCTGCCAGGCACAACT 60.228 57.895 11.22 0.00 33.79 3.16
2204 2649 2.270986 CCCTTCTGCCAGGCACAAC 61.271 63.158 11.22 0.00 33.79 3.32
2205 2650 2.115910 CCCTTCTGCCAGGCACAA 59.884 61.111 11.22 5.88 33.79 3.33
2206 2651 2.853542 TCCCTTCTGCCAGGCACA 60.854 61.111 11.22 0.00 33.79 4.57
2207 2652 2.045536 CTCCCTTCTGCCAGGCAC 60.046 66.667 11.22 0.00 33.79 5.01
2208 2653 3.333219 CCTCCCTTCTGCCAGGCA 61.333 66.667 15.23 15.23 36.92 4.75
2209 2654 4.811364 GCCTCCCTTCTGCCAGGC 62.811 72.222 3.66 3.66 44.63 4.85
2210 2655 1.059006 ATAGCCTCCCTTCTGCCAGG 61.059 60.000 0.00 0.00 0.00 4.45
2211 2656 0.108207 CATAGCCTCCCTTCTGCCAG 59.892 60.000 0.00 0.00 0.00 4.85
2212 2657 0.621571 ACATAGCCTCCCTTCTGCCA 60.622 55.000 0.00 0.00 0.00 4.92
2213 2658 1.424638 TACATAGCCTCCCTTCTGCC 58.575 55.000 0.00 0.00 0.00 4.85
2214 2659 4.090090 TCTATACATAGCCTCCCTTCTGC 58.910 47.826 0.00 0.00 0.00 4.26
2215 2660 4.709397 CCTCTATACATAGCCTCCCTTCTG 59.291 50.000 0.00 0.00 0.00 3.02
2216 2661 4.358614 ACCTCTATACATAGCCTCCCTTCT 59.641 45.833 0.00 0.00 0.00 2.85
2217 2662 4.464597 CACCTCTATACATAGCCTCCCTTC 59.535 50.000 0.00 0.00 0.00 3.46
2218 2663 4.421131 CACCTCTATACATAGCCTCCCTT 58.579 47.826 0.00 0.00 0.00 3.95
2219 2664 3.819754 GCACCTCTATACATAGCCTCCCT 60.820 52.174 0.00 0.00 0.00 4.20
2220 2665 2.498078 GCACCTCTATACATAGCCTCCC 59.502 54.545 0.00 0.00 0.00 4.30
2221 2666 2.498078 GGCACCTCTATACATAGCCTCC 59.502 54.545 0.00 0.00 37.67 4.30
2222 2667 3.165875 TGGCACCTCTATACATAGCCTC 58.834 50.000 0.00 0.00 41.12 4.70
2223 2668 3.169099 CTGGCACCTCTATACATAGCCT 58.831 50.000 0.00 0.00 41.12 4.58
2224 2669 2.900546 ACTGGCACCTCTATACATAGCC 59.099 50.000 0.00 0.00 40.93 3.93
2225 2670 3.322254 ACACTGGCACCTCTATACATAGC 59.678 47.826 0.00 0.00 0.00 2.97
2226 2671 5.069119 TGAACACTGGCACCTCTATACATAG 59.931 44.000 0.00 0.00 0.00 2.23
2227 2672 4.959839 TGAACACTGGCACCTCTATACATA 59.040 41.667 0.00 0.00 0.00 2.29
2228 2673 3.774766 TGAACACTGGCACCTCTATACAT 59.225 43.478 0.00 0.00 0.00 2.29
2229 2674 3.169908 TGAACACTGGCACCTCTATACA 58.830 45.455 0.00 0.00 0.00 2.29
2230 2675 3.887621 TGAACACTGGCACCTCTATAC 57.112 47.619 0.00 0.00 0.00 1.47
2231 2676 4.030216 TGATGAACACTGGCACCTCTATA 58.970 43.478 0.00 0.00 0.00 1.31
2232 2677 2.840038 TGATGAACACTGGCACCTCTAT 59.160 45.455 0.00 0.00 0.00 1.98
2233 2678 2.028112 GTGATGAACACTGGCACCTCTA 60.028 50.000 0.00 0.00 45.13 2.43
2234 2679 1.059098 TGATGAACACTGGCACCTCT 58.941 50.000 0.00 0.00 0.00 3.69
2235 2680 1.160137 GTGATGAACACTGGCACCTC 58.840 55.000 0.00 0.00 45.13 3.85
2236 2681 3.329300 GTGATGAACACTGGCACCT 57.671 52.632 0.00 0.00 45.13 4.00
2245 2690 3.819902 TGCAGCTTATGTTGTGATGAACA 59.180 39.130 0.00 0.00 40.08 3.18
2246 2691 4.424061 TGCAGCTTATGTTGTGATGAAC 57.576 40.909 0.00 0.00 0.00 3.18
2247 2692 4.613394 CGTTGCAGCTTATGTTGTGATGAA 60.613 41.667 0.00 0.00 0.00 2.57
2248 2693 3.120234 CGTTGCAGCTTATGTTGTGATGA 60.120 43.478 0.00 0.00 0.00 2.92
2249 2694 3.165890 CGTTGCAGCTTATGTTGTGATG 58.834 45.455 0.00 0.00 0.00 3.07
2250 2695 2.414559 GCGTTGCAGCTTATGTTGTGAT 60.415 45.455 0.00 0.00 0.00 3.06
2251 2696 1.069296 GCGTTGCAGCTTATGTTGTGA 60.069 47.619 0.00 0.00 0.00 3.58
2252 2697 1.330306 GCGTTGCAGCTTATGTTGTG 58.670 50.000 0.00 0.00 0.00 3.33
2253 2698 0.110238 CGCGTTGCAGCTTATGTTGT 60.110 50.000 0.00 0.00 34.40 3.32
2254 2699 0.165727 TCGCGTTGCAGCTTATGTTG 59.834 50.000 5.77 0.00 34.40 3.33
2255 2700 1.086696 ATCGCGTTGCAGCTTATGTT 58.913 45.000 5.77 0.00 34.40 2.71
2256 2701 0.374758 CATCGCGTTGCAGCTTATGT 59.625 50.000 5.77 0.00 34.40 2.29
2257 2702 0.927083 GCATCGCGTTGCAGCTTATG 60.927 55.000 31.38 14.54 42.31 1.90
2258 2703 1.353103 GCATCGCGTTGCAGCTTAT 59.647 52.632 31.38 1.13 42.31 1.73
2259 2704 2.784596 GCATCGCGTTGCAGCTTA 59.215 55.556 31.38 0.00 42.31 3.09
2270 2715 2.082366 CACCAAAACGCTGCATCGC 61.082 57.895 10.32 0.00 0.00 4.58
2271 2716 2.082366 GCACCAAAACGCTGCATCG 61.082 57.895 8.66 8.66 0.00 3.84
2272 2717 1.734117 GGCACCAAAACGCTGCATC 60.734 57.895 0.00 0.00 32.20 3.91
2273 2718 2.339712 GGCACCAAAACGCTGCAT 59.660 55.556 0.00 0.00 32.20 3.96
2288 2733 4.899239 CTCATCTGTCGCCCGGGC 62.899 72.222 36.69 36.69 37.85 6.13
2289 2734 4.899239 GCTCATCTGTCGCCCGGG 62.899 72.222 19.09 19.09 0.00 5.73
2290 2735 4.899239 GGCTCATCTGTCGCCCGG 62.899 72.222 0.00 0.00 37.86 5.73
2293 2738 4.899239 CCGGGCTCATCTGTCGCC 62.899 72.222 0.00 0.00 43.03 5.54
2294 2739 4.899239 CCCGGGCTCATCTGTCGC 62.899 72.222 8.08 0.00 0.00 5.19
2295 2740 1.464376 ATACCCGGGCTCATCTGTCG 61.464 60.000 24.08 0.00 0.00 4.35
2296 2741 0.034059 CATACCCGGGCTCATCTGTC 59.966 60.000 24.08 0.00 0.00 3.51
2297 2742 0.398522 TCATACCCGGGCTCATCTGT 60.399 55.000 24.08 0.00 0.00 3.41
2298 2743 0.758734 TTCATACCCGGGCTCATCTG 59.241 55.000 24.08 9.29 0.00 2.90
2299 2744 0.759346 GTTCATACCCGGGCTCATCT 59.241 55.000 24.08 1.22 0.00 2.90
2300 2745 0.468226 TGTTCATACCCGGGCTCATC 59.532 55.000 24.08 7.85 0.00 2.92
2301 2746 0.916086 TTGTTCATACCCGGGCTCAT 59.084 50.000 24.08 8.96 0.00 2.90
2302 2747 0.916086 ATTGTTCATACCCGGGCTCA 59.084 50.000 24.08 6.42 0.00 4.26
2303 2748 2.922740 TATTGTTCATACCCGGGCTC 57.077 50.000 24.08 5.28 0.00 4.70
2304 2749 3.284617 GTTTATTGTTCATACCCGGGCT 58.715 45.455 24.08 10.93 0.00 5.19
2305 2750 2.359848 GGTTTATTGTTCATACCCGGGC 59.640 50.000 24.08 2.84 0.00 6.13
2306 2751 3.893521 AGGTTTATTGTTCATACCCGGG 58.106 45.455 22.25 22.25 0.00 5.73
2307 2752 7.393841 TTTAAGGTTTATTGTTCATACCCGG 57.606 36.000 0.00 0.00 0.00 5.73
2330 2775 9.573133 CGCATCTGAGGTTTTTATCTTATTTTT 57.427 29.630 0.00 0.00 0.00 1.94
2331 2776 8.739972 ACGCATCTGAGGTTTTTATCTTATTTT 58.260 29.630 0.00 0.00 0.00 1.82
2332 2777 8.184192 CACGCATCTGAGGTTTTTATCTTATTT 58.816 33.333 0.00 0.00 0.00 1.40
2333 2778 7.552687 TCACGCATCTGAGGTTTTTATCTTATT 59.447 33.333 0.00 0.00 0.00 1.40
2334 2779 7.047891 TCACGCATCTGAGGTTTTTATCTTAT 58.952 34.615 0.00 0.00 0.00 1.73
2335 2780 6.403049 TCACGCATCTGAGGTTTTTATCTTA 58.597 36.000 0.00 0.00 0.00 2.10
2336 2781 5.245531 TCACGCATCTGAGGTTTTTATCTT 58.754 37.500 0.00 0.00 0.00 2.40
2337 2782 4.832248 TCACGCATCTGAGGTTTTTATCT 58.168 39.130 0.00 0.00 0.00 1.98
2338 2783 5.741388 ATCACGCATCTGAGGTTTTTATC 57.259 39.130 0.00 0.00 0.00 1.75
2339 2784 7.807977 AATATCACGCATCTGAGGTTTTTAT 57.192 32.000 0.00 0.00 0.00 1.40
2340 2785 7.552687 AGAAATATCACGCATCTGAGGTTTTTA 59.447 33.333 0.00 0.00 0.00 1.52
2341 2786 6.375455 AGAAATATCACGCATCTGAGGTTTTT 59.625 34.615 0.00 0.00 0.00 1.94
2342 2787 5.882557 AGAAATATCACGCATCTGAGGTTTT 59.117 36.000 0.00 0.00 0.00 2.43
2343 2788 5.295292 CAGAAATATCACGCATCTGAGGTTT 59.705 40.000 0.00 0.00 39.85 3.27
2344 2789 4.813161 CAGAAATATCACGCATCTGAGGTT 59.187 41.667 0.00 0.00 39.85 3.50
2345 2790 4.375272 CAGAAATATCACGCATCTGAGGT 58.625 43.478 0.00 0.00 39.85 3.85
2346 2791 3.186001 GCAGAAATATCACGCATCTGAGG 59.814 47.826 5.34 0.00 39.85 3.86
2347 2792 3.805971 TGCAGAAATATCACGCATCTGAG 59.194 43.478 5.34 0.00 39.85 3.35
2348 2793 3.795877 TGCAGAAATATCACGCATCTGA 58.204 40.909 5.34 0.00 39.85 3.27
2349 2794 4.541085 TTGCAGAAATATCACGCATCTG 57.459 40.909 0.00 0.00 40.30 2.90
2350 2795 5.762825 ATTTGCAGAAATATCACGCATCT 57.237 34.783 0.00 0.00 36.50 2.90
2351 2796 6.817270 AAATTTGCAGAAATATCACGCATC 57.183 33.333 0.00 0.00 36.50 3.91
2352 2797 6.591062 ACAAAATTTGCAGAAATATCACGCAT 59.409 30.769 5.52 0.00 36.50 4.73
2353 2798 5.925397 ACAAAATTTGCAGAAATATCACGCA 59.075 32.000 5.52 0.00 35.29 5.24
2354 2799 6.089283 TGACAAAATTTGCAGAAATATCACGC 59.911 34.615 5.52 0.00 31.18 5.34
2355 2800 7.565450 TGACAAAATTTGCAGAAATATCACG 57.435 32.000 5.52 0.00 31.18 4.35
2356 2801 8.981647 ACTTGACAAAATTTGCAGAAATATCAC 58.018 29.630 5.52 0.00 31.18 3.06
2357 2802 9.545105 AACTTGACAAAATTTGCAGAAATATCA 57.455 25.926 5.52 0.00 31.18 2.15
2360 2805 8.610896 CCAAACTTGACAAAATTTGCAGAAATA 58.389 29.630 5.52 0.00 31.18 1.40
2361 2806 7.336427 TCCAAACTTGACAAAATTTGCAGAAAT 59.664 29.630 5.52 0.00 32.87 2.17
2362 2807 6.652481 TCCAAACTTGACAAAATTTGCAGAAA 59.348 30.769 5.52 0.00 31.95 2.52
2363 2808 6.091986 GTCCAAACTTGACAAAATTTGCAGAA 59.908 34.615 5.52 0.00 31.95 3.02
2364 2809 5.580297 GTCCAAACTTGACAAAATTTGCAGA 59.420 36.000 5.52 8.29 31.95 4.26
2365 2810 5.350914 TGTCCAAACTTGACAAAATTTGCAG 59.649 36.000 5.52 2.47 31.95 4.41
2366 2811 5.240891 TGTCCAAACTTGACAAAATTTGCA 58.759 33.333 5.52 2.42 31.95 4.08
2367 2812 5.793026 TGTCCAAACTTGACAAAATTTGC 57.207 34.783 5.52 0.00 31.95 3.68
2368 2813 8.877779 TGTATTGTCCAAACTTGACAAAATTTG 58.122 29.630 9.57 3.89 41.34 2.32
2369 2814 9.097257 CTGTATTGTCCAAACTTGACAAAATTT 57.903 29.630 9.57 0.00 41.34 1.82
2370 2815 8.474025 TCTGTATTGTCCAAACTTGACAAAATT 58.526 29.630 9.57 0.00 41.34 1.82
2371 2816 8.006298 TCTGTATTGTCCAAACTTGACAAAAT 57.994 30.769 9.57 0.00 41.34 1.82
2372 2817 7.397892 TCTGTATTGTCCAAACTTGACAAAA 57.602 32.000 9.57 0.00 41.34 2.44
2373 2818 7.397892 TTCTGTATTGTCCAAACTTGACAAA 57.602 32.000 9.57 0.00 41.34 2.83
2374 2819 6.459573 GCTTCTGTATTGTCCAAACTTGACAA 60.460 38.462 8.13 8.13 42.07 3.18
2375 2820 5.008613 GCTTCTGTATTGTCCAAACTTGACA 59.991 40.000 0.00 0.00 0.00 3.58
2376 2821 5.239525 AGCTTCTGTATTGTCCAAACTTGAC 59.760 40.000 0.00 0.00 0.00 3.18
2377 2822 5.376625 AGCTTCTGTATTGTCCAAACTTGA 58.623 37.500 0.00 0.00 0.00 3.02
2378 2823 5.615544 CGAGCTTCTGTATTGTCCAAACTTG 60.616 44.000 0.00 0.00 0.00 3.16
2379 2824 4.452455 CGAGCTTCTGTATTGTCCAAACTT 59.548 41.667 0.00 0.00 0.00 2.66
2380 2825 3.997021 CGAGCTTCTGTATTGTCCAAACT 59.003 43.478 0.00 0.00 0.00 2.66
2381 2826 3.746492 ACGAGCTTCTGTATTGTCCAAAC 59.254 43.478 0.00 0.00 0.00 2.93
2382 2827 3.745975 CACGAGCTTCTGTATTGTCCAAA 59.254 43.478 0.00 0.00 0.00 3.28
2383 2828 3.325870 CACGAGCTTCTGTATTGTCCAA 58.674 45.455 0.00 0.00 0.00 3.53
2384 2829 2.353704 CCACGAGCTTCTGTATTGTCCA 60.354 50.000 0.00 0.00 0.00 4.02
2385 2830 2.094182 TCCACGAGCTTCTGTATTGTCC 60.094 50.000 0.00 0.00 0.00 4.02
2386 2831 3.232213 TCCACGAGCTTCTGTATTGTC 57.768 47.619 0.00 0.00 0.00 3.18
2387 2832 3.678056 TTCCACGAGCTTCTGTATTGT 57.322 42.857 0.00 0.00 0.00 2.71
2388 2833 5.356882 TTTTTCCACGAGCTTCTGTATTG 57.643 39.130 0.00 0.00 0.00 1.90
2414 2859 5.236047 TCTCAAATTCGGGCAACAAATTTTG 59.764 36.000 7.59 7.59 31.91 2.44
2415 2860 5.363939 TCTCAAATTCGGGCAACAAATTTT 58.636 33.333 0.00 0.00 31.91 1.82
2416 2861 4.954875 TCTCAAATTCGGGCAACAAATTT 58.045 34.783 0.00 0.00 33.94 1.82
2417 2862 4.599047 TCTCAAATTCGGGCAACAAATT 57.401 36.364 0.00 0.00 39.74 1.82
2418 2863 4.599047 TTCTCAAATTCGGGCAACAAAT 57.401 36.364 0.00 0.00 39.74 2.32
2424 2869 4.038522 TCAAATGTTTCTCAAATTCGGGCA 59.961 37.500 0.00 0.00 0.00 5.36
2493 2938 2.484264 GGTGAAGTTTGGACATTCGAGG 59.516 50.000 0.00 0.00 0.00 4.63
2513 2958 3.726730 CGTGGTGTTCGTACAAAATTTGG 59.273 43.478 10.71 0.00 35.69 3.28
2525 2970 2.127270 GCATGTGCGTGGTGTTCG 60.127 61.111 0.00 0.00 0.00 3.95
2534 2979 1.717113 CAAACAAGATGTGCATGTGCG 59.283 47.619 0.00 0.00 45.83 5.34
2632 3077 1.792949 GCGAATATCCACTTAGGTGCG 59.207 52.381 0.00 0.00 41.75 5.34
2642 3087 6.147656 GTGATCACATATGTTGCGAATATCCA 59.852 38.462 21.07 0.00 0.00 3.41
2644 3089 6.236357 CGTGATCACATATGTTGCGAATATC 58.764 40.000 24.93 2.28 0.00 1.63
2647 3092 3.248363 CCGTGATCACATATGTTGCGAAT 59.752 43.478 24.93 0.00 0.00 3.34
2649 3094 2.159170 TCCGTGATCACATATGTTGCGA 60.159 45.455 24.93 0.84 0.00 5.10
2651 3096 3.187227 GGATCCGTGATCACATATGTTGC 59.813 47.826 24.93 7.39 40.50 4.17
2652 3097 3.748048 GGGATCCGTGATCACATATGTTG 59.252 47.826 24.93 7.12 41.66 3.33
2653 3098 3.244561 GGGGATCCGTGATCACATATGTT 60.245 47.826 24.93 5.92 43.63 2.71
2654 3099 2.303022 GGGGATCCGTGATCACATATGT 59.697 50.000 24.93 1.41 43.63 2.29
2655 3100 2.355108 GGGGGATCCGTGATCACATATG 60.355 54.545 24.93 8.90 43.63 1.78
2656 3101 1.909302 GGGGGATCCGTGATCACATAT 59.091 52.381 24.93 16.69 43.63 1.78
2665 4993 4.109675 GTGGGTGGGGGATCCGTG 62.110 72.222 5.45 0.00 38.76 4.94
2723 5051 1.350684 TGCCAACAGATGCTTACCTGA 59.649 47.619 0.00 0.00 34.65 3.86
2736 5064 3.632604 TCGGTTTTCTATTTGTGCCAACA 59.367 39.130 0.00 0.00 0.00 3.33
2830 5158 0.247814 CACAATCGGAGCACGCAATC 60.248 55.000 0.00 0.00 43.86 2.67
2846 5174 3.305064 GCCCACGAGAAATTTTTAGCACA 60.305 43.478 0.00 0.00 0.00 4.57
2863 5191 1.950630 CAAAAACAGCAGCGCCCAC 60.951 57.895 2.29 0.00 0.00 4.61
2873 5201 3.258971 TGGGCCAGAAAACAAAAACAG 57.741 42.857 0.00 0.00 0.00 3.16
2897 5225 6.146601 CATGCAATGGATACCACACAAATA 57.853 37.500 0.00 0.00 41.79 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.