Multiple sequence alignment - TraesCS2D01G465800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G465800 chr2D 100.000 4004 0 0 1 4004 571543514 571539511 0.000000e+00 7395.0
1 TraesCS2D01G465800 chr2D 82.254 355 53 3 46 390 571615455 571615101 8.410000e-77 298.0
2 TraesCS2D01G465800 chr2D 87.500 248 17 8 816 1063 571675263 571675030 1.420000e-69 274.0
3 TraesCS2D01G465800 chr2A 89.733 2396 145 30 6 2347 710270657 710268309 0.000000e+00 2968.0
4 TraesCS2D01G465800 chr2A 91.586 1438 87 10 2342 3771 710268233 710266822 0.000000e+00 1954.0
5 TraesCS2D01G465800 chr2A 93.642 173 11 0 3757 3929 710266473 710266301 3.970000e-65 259.0
6 TraesCS2D01G465800 chr2A 97.468 79 2 0 3926 4004 520995361 520995439 6.980000e-28 135.0
7 TraesCS2D01G465800 chr2B 92.429 1519 60 17 859 2347 683176382 683174889 0.000000e+00 2117.0
8 TraesCS2D01G465800 chr2B 92.246 1238 89 6 2342 3577 683174813 683173581 0.000000e+00 1748.0
9 TraesCS2D01G465800 chr2B 84.227 317 41 1 6 313 683261856 683261540 2.340000e-77 300.0
10 TraesCS2D01G465800 chr2B 80.469 384 55 12 6 377 683302538 683302163 3.940000e-70 276.0
11 TraesCS2D01G465800 chr2B 82.036 167 26 4 623 788 683176982 683176819 5.400000e-29 139.0
12 TraesCS2D01G465800 chr2B 100.000 30 0 0 2832 2861 683173541 683173570 5.590000e-04 56.5
13 TraesCS2D01G465800 chrUn 96.190 105 4 0 525 629 445362756 445362652 5.320000e-39 172.0
14 TraesCS2D01G465800 chrUn 95.370 108 5 0 522 629 447482672 447482779 5.320000e-39 172.0
15 TraesCS2D01G465800 chrUn 95.370 108 5 0 522 629 462819165 462819272 5.320000e-39 172.0
16 TraesCS2D01G465800 chr1D 95.370 108 5 0 522 629 180355634 180355741 5.320000e-39 172.0
17 TraesCS2D01G465800 chr1D 95.370 108 5 0 522 629 180356136 180356243 5.320000e-39 172.0
18 TraesCS2D01G465800 chr1A 95.370 108 5 0 522 629 554445879 554445986 5.320000e-39 172.0
19 TraesCS2D01G465800 chr1A 95.370 108 5 0 522 629 554446418 554446525 5.320000e-39 172.0
20 TraesCS2D01G465800 chr1A 95.370 108 5 0 522 629 554447687 554447794 5.320000e-39 172.0
21 TraesCS2D01G465800 chr1A 86.755 151 10 4 389 532 168443985 168444132 4.140000e-35 159.0
22 TraesCS2D01G465800 chr1A 98.684 76 1 0 3929 4004 63808401 63808476 6.980000e-28 135.0
23 TraesCS2D01G465800 chr3A 88.194 144 16 1 2712 2854 333214389 333214532 1.910000e-38 171.0
24 TraesCS2D01G465800 chr3A 88.194 144 10 3 389 525 692572438 692572295 8.900000e-37 165.0
25 TraesCS2D01G465800 chr3A 86.614 127 9 4 389 507 471792255 471792129 2.510000e-27 134.0
26 TraesCS2D01G465800 chr5B 88.889 144 7 4 389 525 493986454 493986313 6.880000e-38 169.0
27 TraesCS2D01G465800 chr5B 98.684 76 1 0 3929 4004 560627686 560627611 6.980000e-28 135.0
28 TraesCS2D01G465800 chr5B 93.103 87 6 0 3918 4004 353727998 353728084 1.170000e-25 128.0
29 TraesCS2D01G465800 chr1B 88.028 142 12 1 389 525 340207540 340207681 3.200000e-36 163.0
30 TraesCS2D01G465800 chr1B 97.500 80 2 0 3925 4004 83141583 83141662 1.940000e-28 137.0
31 TraesCS2D01G465800 chr3D 89.431 123 13 0 403 525 107088968 107089090 5.360000e-34 156.0
32 TraesCS2D01G465800 chr3D 85.417 144 20 1 2715 2857 250941265 250941122 8.970000e-32 148.0
33 TraesCS2D01G465800 chr4D 86.897 145 8 5 389 525 19923092 19922951 6.930000e-33 152.0
34 TraesCS2D01G465800 chr4D 90.265 113 5 4 414 526 454326012 454326118 4.170000e-30 143.0
35 TraesCS2D01G465800 chr6A 98.701 77 1 0 3928 4004 516149702 516149778 1.940000e-28 137.0
36 TraesCS2D01G465800 chr6B 97.468 79 2 0 3926 4004 236652904 236652826 6.980000e-28 135.0
37 TraesCS2D01G465800 chr4A 93.258 89 5 1 3917 4004 588440277 588440189 3.250000e-26 130.0
38 TraesCS2D01G465800 chr5A 93.258 89 3 3 3919 4004 454664440 454664528 1.170000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G465800 chr2D 571539511 571543514 4003 True 7395.000000 7395 100.000000 1 4004 1 chr2D.!!$R1 4003
1 TraesCS2D01G465800 chr2A 710266301 710270657 4356 True 1727.000000 2968 91.653667 6 3929 3 chr2A.!!$R1 3923
2 TraesCS2D01G465800 chr2B 683173581 683176982 3401 True 1334.666667 2117 88.903667 623 3577 3 chr2B.!!$R3 2954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.250513 GTCGCCATGATCCCTATCCC 59.749 60.0 0.0 0.0 0.00 3.85 F
1183 1558 0.029474 CCCCAACCCCACCTATCCTA 60.029 60.0 0.0 0.0 0.00 2.94 F
1237 1612 0.464452 AATAGCGTACCAGCCTGACC 59.536 55.0 0.0 0.0 38.01 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1188 1563 0.037232 GACGGAGGTTGAAGACTGGG 60.037 60.0 0.00 0.0 0.00 4.45 R
2238 2656 0.108662 CTGACCGCATGCAGACTGTA 60.109 55.0 19.57 0.0 34.06 2.74 R
3023 3529 0.181350 GCCATTAGCCCAGCACTACT 59.819 55.0 0.00 0.0 34.35 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.743636 TCTGTCGGTGATGGTTCTTC 57.256 50.000 0.00 0.00 0.00 2.87
37 38 1.337823 CGGTGATGGTTCTTCCGACTT 60.338 52.381 0.00 0.00 40.09 3.01
83 84 4.368543 GCCAAGCCAAGCACCTGC 62.369 66.667 0.00 0.00 42.49 4.85
108 109 2.602878 TCGCTTACAAATCGTCCTGAC 58.397 47.619 0.00 0.00 0.00 3.51
114 115 3.485463 ACAAATCGTCCTGACCTTTCA 57.515 42.857 0.00 0.00 0.00 2.69
121 122 2.479730 CGTCCTGACCTTTCATACCGAG 60.480 54.545 0.00 0.00 0.00 4.63
125 126 3.179830 CTGACCTTTCATACCGAGTTCG 58.820 50.000 0.00 0.00 39.44 3.95
130 131 3.430374 CCTTTCATACCGAGTTCGATGGT 60.430 47.826 2.59 4.82 43.02 3.55
132 133 3.431922 TCATACCGAGTTCGATGGTTC 57.568 47.619 2.59 0.00 43.02 3.62
153 154 0.250513 GTCGCCATGATCCCTATCCC 59.749 60.000 0.00 0.00 0.00 3.85
154 155 1.219124 CGCCATGATCCCTATCCCG 59.781 63.158 0.00 0.00 0.00 5.14
156 157 0.984230 GCCATGATCCCTATCCCGAA 59.016 55.000 0.00 0.00 0.00 4.30
165 166 3.075884 TCCCTATCCCGAAAACAAAACG 58.924 45.455 0.00 0.00 0.00 3.60
174 175 1.855978 GAAAACAAAACGCGGGGAAAG 59.144 47.619 12.47 0.00 0.00 2.62
186 187 0.335019 GGGGAAAGCCTAACCCACAT 59.665 55.000 0.00 0.00 44.87 3.21
189 190 2.092323 GGAAAGCCTAACCCACATGAC 58.908 52.381 0.00 0.00 0.00 3.06
198 199 0.702316 ACCCACATGACCCCTAAACC 59.298 55.000 0.00 0.00 0.00 3.27
203 204 2.070573 ACATGACCCCTAAACCAAGGT 58.929 47.619 0.00 0.00 34.56 3.50
205 206 2.668144 TGACCCCTAAACCAAGGTTG 57.332 50.000 5.06 0.00 38.47 3.77
238 239 3.590574 GGCCCCCTTGTTCACCCT 61.591 66.667 0.00 0.00 0.00 4.34
274 275 1.004758 TGGGATTGGAGGAGGGAGG 59.995 63.158 0.00 0.00 0.00 4.30
301 302 4.514577 CCGTCGATGAAGGGCGCT 62.515 66.667 7.64 0.00 0.00 5.92
311 312 0.972883 GAAGGGCGCTGAGAGGATAT 59.027 55.000 7.64 0.00 0.00 1.63
341 342 2.483889 GCGAGAGGGGAAACTGGAATAG 60.484 54.545 0.00 0.00 0.00 1.73
342 343 3.031736 CGAGAGGGGAAACTGGAATAGA 58.968 50.000 0.00 0.00 0.00 1.98
352 353 7.363007 GGGGAAACTGGAATAGAAGAATTGTTC 60.363 40.741 7.23 7.23 0.00 3.18
380 381 1.858458 CTTCGAGAGTTGCGTTGTGAA 59.142 47.619 0.00 0.00 0.00 3.18
386 387 3.733337 AGAGTTGCGTTGTGAAGAAGAT 58.267 40.909 0.00 0.00 0.00 2.40
394 395 4.780324 GCGTTGTGAAGAAGATTGATAGCG 60.780 45.833 0.00 0.00 0.00 4.26
395 396 4.562789 CGTTGTGAAGAAGATTGATAGCGA 59.437 41.667 0.00 0.00 0.00 4.93
396 397 5.062183 CGTTGTGAAGAAGATTGATAGCGAA 59.938 40.000 0.00 0.00 0.00 4.70
397 398 6.237942 CGTTGTGAAGAAGATTGATAGCGAAT 60.238 38.462 0.00 0.00 0.00 3.34
398 399 7.043391 CGTTGTGAAGAAGATTGATAGCGAATA 60.043 37.037 0.00 0.00 0.00 1.75
399 400 8.768955 GTTGTGAAGAAGATTGATAGCGAATAT 58.231 33.333 0.00 0.00 0.00 1.28
400 401 8.893219 TGTGAAGAAGATTGATAGCGAATATT 57.107 30.769 0.00 0.00 0.00 1.28
401 402 9.330063 TGTGAAGAAGATTGATAGCGAATATTT 57.670 29.630 0.00 0.00 0.00 1.40
402 403 9.591404 GTGAAGAAGATTGATAGCGAATATTTG 57.409 33.333 0.00 0.00 0.00 2.32
403 404 9.546428 TGAAGAAGATTGATAGCGAATATTTGA 57.454 29.630 6.89 0.00 0.00 2.69
406 407 8.997323 AGAAGATTGATAGCGAATATTTGAAGG 58.003 33.333 6.89 0.00 0.00 3.46
480 481 9.878599 CTAAGTTCTAAAATTCAAGCGAAAAGA 57.121 29.630 0.00 0.00 34.01 2.52
549 555 4.021104 CCAAAAGAAAGGGAGTTGGGATTC 60.021 45.833 0.00 0.00 36.00 2.52
558 564 3.225940 GGAGTTGGGATTCCATTGGATC 58.774 50.000 6.15 6.43 43.63 3.36
562 568 4.897670 AGTTGGGATTCCATTGGATCAATC 59.102 41.667 6.15 6.76 43.63 2.67
586 592 3.413846 AAAGAAGATGCAGCACAGAGA 57.586 42.857 4.07 0.00 0.00 3.10
594 601 4.280174 AGATGCAGCACAGAGAAAACAAAT 59.720 37.500 4.07 0.00 0.00 2.32
607 614 7.059945 CAGAGAAAACAAATGCTAAACTAAGCG 59.940 37.037 0.00 0.00 45.85 4.68
644 651 0.610232 AAGAGCAATGGAGGGCACAC 60.610 55.000 0.00 0.00 0.00 3.82
645 652 2.360350 AGCAATGGAGGGCACACG 60.360 61.111 0.00 0.00 0.00 4.49
695 703 5.867903 TGAAGATTCTTCCTTTTGGCAAA 57.132 34.783 20.87 8.93 40.12 3.68
739 747 4.731720 TGTACACCATTCGCATCAAAATG 58.268 39.130 0.00 0.00 35.87 2.32
789 797 5.687166 TTGGTTCGGAGGTAGTATTTGAT 57.313 39.130 0.00 0.00 0.00 2.57
815 825 8.974060 AAAAATTGTCCTTCTAGTGTGAGTAA 57.026 30.769 0.00 0.00 0.00 2.24
839 860 7.798486 ACAATAGCTCTTATACGCGATAAAG 57.202 36.000 15.93 12.76 29.39 1.85
896 1271 1.539827 CGAACATTTCCACCCCTTGAC 59.460 52.381 0.00 0.00 0.00 3.18
906 1281 1.076727 CCCCTTGACAACCCCTTCC 59.923 63.158 0.00 0.00 0.00 3.46
909 1284 1.725169 CCTTGACAACCCCTTCCCCA 61.725 60.000 0.00 0.00 0.00 4.96
913 1288 0.251209 GACAACCCCTTCCCCAACTC 60.251 60.000 0.00 0.00 0.00 3.01
914 1289 0.996762 ACAACCCCTTCCCCAACTCA 60.997 55.000 0.00 0.00 0.00 3.41
915 1290 0.409484 CAACCCCTTCCCCAACTCAT 59.591 55.000 0.00 0.00 0.00 2.90
916 1291 1.638589 CAACCCCTTCCCCAACTCATA 59.361 52.381 0.00 0.00 0.00 2.15
917 1292 2.042433 CAACCCCTTCCCCAACTCATAA 59.958 50.000 0.00 0.00 0.00 1.90
918 1293 2.364190 ACCCCTTCCCCAACTCATAAA 58.636 47.619 0.00 0.00 0.00 1.40
989 1364 1.377725 CTCAAGCACCAGCCGGAAT 60.378 57.895 5.05 0.00 43.56 3.01
992 1367 2.954684 AAGCACCAGCCGGAATCGA 61.955 57.895 5.05 0.00 43.56 3.59
1183 1558 0.029474 CCCCAACCCCACCTATCCTA 60.029 60.000 0.00 0.00 0.00 2.94
1184 1559 1.417506 CCCCAACCCCACCTATCCTAT 60.418 57.143 0.00 0.00 0.00 2.57
1187 1562 2.429383 CCAACCCCACCTATCCTATCCT 60.429 54.545 0.00 0.00 0.00 3.24
1188 1563 2.907042 CAACCCCACCTATCCTATCCTC 59.093 54.545 0.00 0.00 0.00 3.71
1189 1564 1.437547 ACCCCACCTATCCTATCCTCC 59.562 57.143 0.00 0.00 0.00 4.30
1190 1565 1.273896 CCCCACCTATCCTATCCTCCC 60.274 61.905 0.00 0.00 0.00 4.30
1191 1566 1.437149 CCCACCTATCCTATCCTCCCA 59.563 57.143 0.00 0.00 0.00 4.37
1236 1611 2.202566 GAAATAGCGTACCAGCCTGAC 58.797 52.381 0.00 0.00 38.01 3.51
1237 1612 0.464452 AATAGCGTACCAGCCTGACC 59.536 55.000 0.00 0.00 38.01 4.02
1238 1613 0.686441 ATAGCGTACCAGCCTGACCA 60.686 55.000 0.00 0.00 38.01 4.02
1239 1614 1.601419 TAGCGTACCAGCCTGACCAC 61.601 60.000 0.00 0.00 38.01 4.16
1335 1710 1.347320 CCTTGTTCGTCGTAAGCCTC 58.653 55.000 0.00 0.00 37.18 4.70
1341 1716 2.048444 TCGTCGTAAGCCTCTACCAT 57.952 50.000 0.00 0.00 37.18 3.55
1357 1732 6.296145 CCTCTACCATAATCTTCAAGATCCCC 60.296 46.154 0.00 0.00 32.89 4.81
1358 1733 4.731313 ACCATAATCTTCAAGATCCCCC 57.269 45.455 0.00 0.00 32.89 5.40
1388 1784 2.027192 TCCGCCAATTCTTACTCTGCTT 60.027 45.455 0.00 0.00 0.00 3.91
1390 1786 3.938963 CCGCCAATTCTTACTCTGCTTTA 59.061 43.478 0.00 0.00 0.00 1.85
1395 1791 5.940470 CCAATTCTTACTCTGCTTTACCTGT 59.060 40.000 0.00 0.00 0.00 4.00
1523 1919 5.748402 TCTCCATTGTGCTGATACATTTCT 58.252 37.500 0.00 0.00 0.00 2.52
1535 1931 6.238593 GCTGATACATTTCTTTTAGCCTCAGG 60.239 42.308 0.00 0.00 0.00 3.86
1546 1942 0.570218 AGCCTCAGGTATCAGGGGAT 59.430 55.000 0.00 0.00 37.55 3.85
1656 2053 1.608025 CGGCAGAAGGTTCTTGTGCTA 60.608 52.381 22.70 0.00 34.74 3.49
1657 2054 2.504367 GGCAGAAGGTTCTTGTGCTAA 58.496 47.619 22.70 0.00 34.74 3.09
1726 2123 5.010922 TGGTCATAATGCTCTGCTTGTTTTT 59.989 36.000 0.00 0.00 0.00 1.94
1727 2124 5.346822 GGTCATAATGCTCTGCTTGTTTTTG 59.653 40.000 0.00 0.00 0.00 2.44
1763 2165 1.961277 GCGGACACAGTTCTGGGTG 60.961 63.158 12.62 0.60 40.78 4.61
1855 2260 6.466097 GCTTCGTGCTATCAGAACAATTTAAC 59.534 38.462 0.00 0.00 38.95 2.01
1860 2265 6.524586 GTGCTATCAGAACAATTTAACAGTGC 59.475 38.462 0.00 0.00 0.00 4.40
1868 2273 8.482429 CAGAACAATTTAACAGTGCTTGAAATC 58.518 33.333 0.00 0.00 0.00 2.17
1953 2358 1.870327 TCATACCCTGGTCCCCTATCA 59.130 52.381 0.00 0.00 0.00 2.15
2153 2571 4.021016 AGAGTTCTACAGACACCATTGGTC 60.021 45.833 5.04 0.00 31.02 4.02
2197 2615 4.185286 GGGTGGGCGGGTATGACC 62.185 72.222 0.00 0.00 37.64 4.02
2238 2656 9.453572 TCATGCAAAGTATTCTCTGTTAATCTT 57.546 29.630 0.00 0.00 0.00 2.40
2251 2669 5.582269 TCTGTTAATCTTACAGTCTGCATGC 59.418 40.000 11.82 11.82 42.77 4.06
2258 2676 1.079612 CAGTCTGCATGCGGTCAGA 60.080 57.895 25.42 13.59 37.03 3.27
2308 2726 5.242838 CCAATGACTGTTTAACTTAGGCCAA 59.757 40.000 5.01 0.00 0.00 4.52
2329 2747 8.903820 GGCCAATCACTATTTTGTTAGTTCTAT 58.096 33.333 0.00 0.00 29.93 1.98
2397 2896 8.971073 CAATGTTTTTGAGGGATCCTAAAGTAT 58.029 33.333 12.58 4.74 31.76 2.12
2425 2924 9.948964 TCAGATTGAGGATATATTAACCATGTG 57.051 33.333 0.00 0.00 0.00 3.21
2455 2954 8.806429 TGGCTTAATTTCAACATCTCTATGAA 57.194 30.769 0.00 0.00 36.54 2.57
2468 2967 8.107399 ACATCTCTATGAAATGCCATGTATTG 57.893 34.615 0.00 0.00 36.54 1.90
2513 3012 6.658816 TCAAGCTTATTCTTGCCTTCATGTTA 59.341 34.615 0.00 0.00 42.29 2.41
2566 3069 6.182627 TGCTTCACTGATAGGAATTTCACAT 58.817 36.000 0.00 0.00 0.00 3.21
2658 3162 8.474025 AGACAATCTCTTTTCTGTATCTTCGAT 58.526 33.333 0.00 0.00 0.00 3.59
2659 3163 8.641499 ACAATCTCTTTTCTGTATCTTCGATC 57.359 34.615 0.00 0.00 0.00 3.69
2666 3170 5.344743 TTCTGTATCTTCGATCAAGGCTT 57.655 39.130 0.00 0.00 32.22 4.35
2690 3194 8.786826 TTGTGTTGATTATGTAGGGAGTTTAG 57.213 34.615 0.00 0.00 0.00 1.85
2736 3240 3.988379 TTTGCAAGTTGACATCTCACC 57.012 42.857 7.16 0.00 0.00 4.02
2862 3368 7.700322 TCGTATTGATAAAGATCTTCAGTGC 57.300 36.000 8.78 2.70 32.79 4.40
2868 3374 6.108687 TGATAAAGATCTTCAGTGCGACAAT 58.891 36.000 8.78 0.00 32.79 2.71
2981 3487 7.639113 TGTACCAAAAGACAAGATGTTTCTT 57.361 32.000 0.00 0.00 43.09 2.52
3047 3553 1.825622 GCTGGGCTAATGGCTGGTC 60.826 63.158 0.00 0.00 41.46 4.02
3063 3569 3.619487 GCTGGTCTCTCTCTGCTTGATTT 60.619 47.826 0.00 0.00 0.00 2.17
3103 3609 2.133281 TTCACATTCCCTGGCATCTG 57.867 50.000 0.00 0.00 0.00 2.90
3141 3647 2.299867 GTGAATGAATTGGGCCTTGTGT 59.700 45.455 4.53 0.00 0.00 3.72
3241 3747 4.277515 TGAGGAAGAAAGATCACAGTGG 57.722 45.455 0.00 0.00 0.00 4.00
3264 3770 8.357402 GTGGAGTTAATTTCAGTGTTAACCATT 58.643 33.333 2.48 0.00 40.12 3.16
3311 3817 0.106519 GTATCCAGGGCTGCATTGGT 60.107 55.000 17.59 10.12 33.65 3.67
3388 3894 6.493449 TTGTCTTTTGCCCTTTTCAAAAAG 57.507 33.333 8.02 8.02 41.23 2.27
3390 3896 6.234177 TGTCTTTTGCCCTTTTCAAAAAGAA 58.766 32.000 15.15 1.36 46.39 2.52
3392 3898 7.094848 TGTCTTTTGCCCTTTTCAAAAAGAAAG 60.095 33.333 15.15 14.89 46.24 2.62
3395 3901 7.751768 TTTGCCCTTTTCAAAAAGAAAGAAA 57.248 28.000 15.15 7.01 46.24 2.52
3396 3902 6.983474 TGCCCTTTTCAAAAAGAAAGAAAG 57.017 33.333 15.15 0.00 46.24 2.62
3397 3903 6.706295 TGCCCTTTTCAAAAAGAAAGAAAGA 58.294 32.000 15.15 0.00 46.24 2.52
3398 3904 7.164803 TGCCCTTTTCAAAAAGAAAGAAAGAA 58.835 30.769 15.15 0.00 46.24 2.52
3399 3905 7.663493 TGCCCTTTTCAAAAAGAAAGAAAGAAA 59.337 29.630 15.15 0.00 46.24 2.52
3400 3906 8.177663 GCCCTTTTCAAAAAGAAAGAAAGAAAG 58.822 33.333 15.15 0.00 46.24 2.62
3442 3949 5.620206 TGTTGATCTATGGCCGAATGTAAT 58.380 37.500 0.00 0.00 0.00 1.89
3465 3972 0.536006 ACTTTGCTCTCAGTGGCCAC 60.536 55.000 29.22 29.22 0.00 5.01
3469 3976 0.111061 TGCTCTCAGTGGCCACAAAT 59.889 50.000 36.39 14.89 0.00 2.32
3480 3987 1.488390 GCCACAAATGATGGATGGGT 58.512 50.000 0.00 0.00 39.87 4.51
3527 4034 7.233389 TGTAAGAGACTGATACTTTTCTGCT 57.767 36.000 0.00 0.00 0.00 4.24
3611 4118 9.006839 TGATTGATCTACTGATATTGATTTGGC 57.993 33.333 0.00 0.00 32.19 4.52
3635 4142 2.809861 ATTGCACCACAGCCTCCTCG 62.810 60.000 0.00 0.00 0.00 4.63
3667 4174 2.103373 TGTAGCATCTGGAGACACCTC 58.897 52.381 0.00 0.00 39.86 3.85
3725 4232 4.550577 TGCTGAACTAAACATGTGTGTG 57.449 40.909 0.00 0.00 38.92 3.82
3737 4244 0.462375 TGTGTGTGGACTGTTACGCT 59.538 50.000 9.85 0.00 0.00 5.07
3748 4255 5.122869 TGGACTGTTACGCTAGTAGTACTTG 59.877 44.000 8.40 7.79 33.87 3.16
3762 4269 1.798813 GTACTTGCTGTCCTGTTTCCG 59.201 52.381 0.00 0.00 0.00 4.30
3771 4278 2.328099 CCTGTTTCCGTGCCTGCTC 61.328 63.158 0.00 0.00 0.00 4.26
3789 4659 1.269998 CTCAGGTCTTCGTTCCGAACT 59.730 52.381 9.55 0.00 41.05 3.01
3797 4667 1.079127 CGTTCCGAACTGGGCTCAT 60.079 57.895 9.55 0.00 38.76 2.90
3809 4679 2.036217 CTGGGCTCATTTTGCTGTCAAA 59.964 45.455 0.00 0.00 40.17 2.69
3814 4684 4.309099 GCTCATTTTGCTGTCAAATTGGA 58.691 39.130 13.85 0.00 41.37 3.53
3827 4697 2.470983 AATTGGACCATTTTTGGGCG 57.529 45.000 0.00 0.00 38.04 6.13
3853 4723 0.603707 CAGTTTCGGCCTTCAGCTCA 60.604 55.000 0.00 0.00 43.05 4.26
3858 4728 1.188219 TCGGCCTTCAGCTCACTCTT 61.188 55.000 0.00 0.00 43.05 2.85
3929 4799 0.464554 GGGTGTTCTCTATGCTGCCC 60.465 60.000 0.00 0.00 0.00 5.36
3930 4800 0.543749 GGTGTTCTCTATGCTGCCCT 59.456 55.000 0.00 0.00 0.00 5.19
3931 4801 1.474143 GGTGTTCTCTATGCTGCCCTC 60.474 57.143 0.00 0.00 0.00 4.30
3932 4802 1.484240 GTGTTCTCTATGCTGCCCTCT 59.516 52.381 0.00 0.00 0.00 3.69
3933 4803 1.483827 TGTTCTCTATGCTGCCCTCTG 59.516 52.381 0.00 0.00 0.00 3.35
3934 4804 1.484240 GTTCTCTATGCTGCCCTCTGT 59.516 52.381 0.00 0.00 0.00 3.41
3935 4805 1.871418 TCTCTATGCTGCCCTCTGTT 58.129 50.000 0.00 0.00 0.00 3.16
3936 4806 1.483827 TCTCTATGCTGCCCTCTGTTG 59.516 52.381 0.00 0.00 0.00 3.33
3937 4807 1.483827 CTCTATGCTGCCCTCTGTTGA 59.516 52.381 0.00 0.00 0.00 3.18
3938 4808 1.908619 TCTATGCTGCCCTCTGTTGAA 59.091 47.619 0.00 0.00 0.00 2.69
3939 4809 2.305635 TCTATGCTGCCCTCTGTTGAAA 59.694 45.455 0.00 0.00 0.00 2.69
3940 4810 1.999648 ATGCTGCCCTCTGTTGAAAA 58.000 45.000 0.00 0.00 0.00 2.29
3941 4811 1.774110 TGCTGCCCTCTGTTGAAAAA 58.226 45.000 0.00 0.00 0.00 1.94
3942 4812 1.682854 TGCTGCCCTCTGTTGAAAAAG 59.317 47.619 0.00 0.00 0.00 2.27
3943 4813 1.000171 GCTGCCCTCTGTTGAAAAAGG 60.000 52.381 0.00 0.00 0.00 3.11
3944 4814 1.000171 CTGCCCTCTGTTGAAAAAGGC 60.000 52.381 0.00 0.00 39.41 4.35
3945 4815 1.039856 GCCCTCTGTTGAAAAAGGCA 58.960 50.000 0.00 0.00 38.79 4.75
3946 4816 1.000171 GCCCTCTGTTGAAAAAGGCAG 60.000 52.381 0.00 0.00 38.79 4.85
3947 4817 2.310538 CCCTCTGTTGAAAAAGGCAGT 58.689 47.619 0.00 0.00 0.00 4.40
3948 4818 2.035066 CCCTCTGTTGAAAAAGGCAGTG 59.965 50.000 0.00 0.00 0.00 3.66
3949 4819 2.544486 CCTCTGTTGAAAAAGGCAGTGC 60.544 50.000 6.55 6.55 0.00 4.40
3966 4836 2.737830 CCTAGGAGGCGCTTAGGC 59.262 66.667 13.16 0.00 39.21 3.93
3987 4857 4.368391 CCTAGGCGCTAGGCAATG 57.632 61.111 16.56 0.00 45.64 2.82
3988 4858 1.302033 CCTAGGCGCTAGGCAATGG 60.302 63.158 16.56 2.27 45.64 3.16
3989 4859 1.963338 CTAGGCGCTAGGCAATGGC 60.963 63.158 7.64 0.00 46.16 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.097466 CACCGACAGAAGCAACTTGTTT 59.903 45.455 0.00 0.00 0.00 2.83
1 2 1.670811 CACCGACAGAAGCAACTTGTT 59.329 47.619 0.00 0.00 0.00 2.83
2 3 1.134521 TCACCGACAGAAGCAACTTGT 60.135 47.619 0.00 0.00 0.00 3.16
3 4 1.581934 TCACCGACAGAAGCAACTTG 58.418 50.000 0.00 0.00 0.00 3.16
4 5 2.146342 CATCACCGACAGAAGCAACTT 58.854 47.619 0.00 0.00 0.00 2.66
31 32 3.431912 TGATGATGTCGTTTTCAAGTCGG 59.568 43.478 0.00 0.00 0.00 4.79
37 38 3.751175 GGACCTTGATGATGTCGTTTTCA 59.249 43.478 0.00 0.00 0.00 2.69
83 84 3.804325 AGGACGATTTGTAAGCGATGATG 59.196 43.478 3.96 0.00 44.20 3.07
108 109 3.123804 CCATCGAACTCGGTATGAAAGG 58.876 50.000 0.00 0.00 40.29 3.11
114 115 2.758979 ACAGAACCATCGAACTCGGTAT 59.241 45.455 0.00 0.00 40.29 2.73
121 122 0.669318 TGGCGACAGAACCATCGAAC 60.669 55.000 0.00 0.00 40.86 3.95
125 126 1.869767 GATCATGGCGACAGAACCATC 59.130 52.381 0.00 0.00 44.97 3.51
153 154 0.248539 TTCCCCGCGTTTTGTTTTCG 60.249 50.000 4.92 0.00 0.00 3.46
154 155 1.855978 CTTTCCCCGCGTTTTGTTTTC 59.144 47.619 4.92 0.00 0.00 2.29
156 157 0.528901 GCTTTCCCCGCGTTTTGTTT 60.529 50.000 4.92 0.00 0.00 2.83
165 166 2.439701 GGGTTAGGCTTTCCCCGC 60.440 66.667 13.56 0.00 35.52 6.13
174 175 1.076995 GGGGTCATGTGGGTTAGGC 60.077 63.158 0.00 0.00 0.00 3.93
186 187 1.146152 CCAACCTTGGTTTAGGGGTCA 59.854 52.381 1.76 0.00 43.43 4.02
212 213 4.372999 AAGGGGGCCTCTTGCAGC 62.373 66.667 20.28 0.00 43.89 5.25
215 216 1.979155 GAACAAGGGGGCCTCTTGC 60.979 63.158 39.63 24.16 43.79 4.01
222 223 2.283173 CAGGGTGAACAAGGGGGC 60.283 66.667 0.00 0.00 0.00 5.80
223 224 1.380302 CTCAGGGTGAACAAGGGGG 59.620 63.158 0.00 0.00 0.00 5.40
238 239 0.105964 CACGGTTGTCCCTTCACTCA 59.894 55.000 0.00 0.00 0.00 3.41
284 285 4.514577 AGCGCCCTTCATCGACGG 62.515 66.667 2.29 0.00 0.00 4.79
311 312 1.153989 CCCCTCTCGCTAGGATCCA 59.846 63.158 15.82 0.00 39.15 3.41
341 342 7.755822 TCTCGAAGCTACTAAGAACAATTCTTC 59.244 37.037 7.08 0.00 46.62 2.87
352 353 3.102276 CGCAACTCTCGAAGCTACTAAG 58.898 50.000 0.00 0.00 0.00 2.18
357 358 1.000607 ACAACGCAACTCTCGAAGCTA 60.001 47.619 0.00 0.00 0.00 3.32
364 365 3.123804 TCTTCTTCACAACGCAACTCTC 58.876 45.455 0.00 0.00 0.00 3.20
380 381 8.997323 CCTTCAAATATTCGCTATCAATCTTCT 58.003 33.333 0.00 0.00 0.00 2.85
386 387 8.154203 TGGTATCCTTCAAATATTCGCTATCAA 58.846 33.333 0.00 0.00 0.00 2.57
520 526 6.190587 CCAACTCCCTTTCTTTTGGATATCT 58.809 40.000 2.05 0.00 39.33 1.98
532 538 2.899303 TGGAATCCCAACTCCCTTTC 57.101 50.000 0.00 0.00 40.09 2.62
549 555 9.745880 CATCTTCTTTAAAGATTGATCCAATGG 57.254 33.333 18.37 8.63 34.96 3.16
558 564 6.384224 TGTGCTGCATCTTCTTTAAAGATTG 58.616 36.000 18.37 15.97 34.96 2.67
562 568 5.410746 TCTCTGTGCTGCATCTTCTTTAAAG 59.589 40.000 5.27 9.04 0.00 1.85
586 592 5.528870 AGCGCTTAGTTTAGCATTTGTTTT 58.471 33.333 2.64 0.00 41.28 2.43
594 601 4.561735 AACAAAAGCGCTTAGTTTAGCA 57.438 36.364 25.33 0.00 41.28 3.49
695 703 1.675552 AAAAATACTAGCCGGCGCAT 58.324 45.000 23.20 12.89 37.52 4.73
715 723 6.094742 ACATTTTGATGCGAATGGTGTACATA 59.905 34.615 0.00 0.00 39.40 2.29
730 738 6.991485 AGCAAAACGTCTTACATTTTGATG 57.009 33.333 13.62 0.00 43.07 3.07
815 825 7.591165 TCTTTATCGCGTATAAGAGCTATTGT 58.409 34.615 5.77 0.00 31.68 2.71
857 878 6.300703 TGTTCGAGGAAATTCTTTTTAGGGA 58.699 36.000 0.00 0.00 0.00 4.20
896 1271 0.409484 ATGAGTTGGGGAAGGGGTTG 59.591 55.000 0.00 0.00 0.00 3.77
973 1348 2.753966 CGATTCCGGCTGGTGCTTG 61.754 63.158 12.43 0.00 39.59 4.01
1183 1558 2.192263 GAGGTTGAAGACTGGGAGGAT 58.808 52.381 0.00 0.00 0.00 3.24
1184 1559 1.645710 GAGGTTGAAGACTGGGAGGA 58.354 55.000 0.00 0.00 0.00 3.71
1187 1562 0.471211 ACGGAGGTTGAAGACTGGGA 60.471 55.000 0.00 0.00 0.00 4.37
1188 1563 0.037232 GACGGAGGTTGAAGACTGGG 60.037 60.000 0.00 0.00 0.00 4.45
1189 1564 0.969894 AGACGGAGGTTGAAGACTGG 59.030 55.000 0.00 0.00 0.00 4.00
1190 1565 1.067495 GGAGACGGAGGTTGAAGACTG 60.067 57.143 0.00 0.00 0.00 3.51
1191 1566 1.203075 AGGAGACGGAGGTTGAAGACT 60.203 52.381 0.00 0.00 0.00 3.24
1236 1611 1.912763 CCAATTGGTGGGTGGGTGG 60.913 63.158 16.90 0.00 44.64 4.61
1237 1612 3.790223 CCAATTGGTGGGTGGGTG 58.210 61.111 16.90 0.00 44.64 4.61
1335 1710 5.810095 GGGGGATCTTGAAGATTATGGTAG 58.190 45.833 9.35 0.00 34.53 3.18
1357 1732 2.514516 AATTGGCGGAAGGGGAAGGG 62.515 60.000 0.00 0.00 0.00 3.95
1358 1733 1.000359 AATTGGCGGAAGGGGAAGG 60.000 57.895 0.00 0.00 0.00 3.46
1360 1735 0.407918 AAGAATTGGCGGAAGGGGAA 59.592 50.000 0.00 0.00 0.00 3.97
1371 1767 5.940470 ACAGGTAAAGCAGAGTAAGAATTGG 59.060 40.000 0.00 0.00 0.00 3.16
1373 1769 7.180408 TCCTACAGGTAAAGCAGAGTAAGAATT 59.820 37.037 0.00 0.00 36.34 2.17
1388 1784 0.974010 CCGTGGGCTCCTACAGGTAA 60.974 60.000 3.36 0.00 36.34 2.85
1390 1786 2.683933 CCGTGGGCTCCTACAGGT 60.684 66.667 3.36 0.00 36.34 4.00
1523 1919 2.777692 CCCCTGATACCTGAGGCTAAAA 59.222 50.000 0.00 0.00 0.00 1.52
1726 2123 2.750948 GCTCGACCAACTAGACAAACA 58.249 47.619 0.00 0.00 0.00 2.83
1727 2124 1.719780 CGCTCGACCAACTAGACAAAC 59.280 52.381 0.00 0.00 0.00 2.93
1763 2165 4.706962 ACATTTCTAAGCCCCAATTCTGTC 59.293 41.667 0.00 0.00 0.00 3.51
1794 2196 4.564782 ATGTGAGAAAGATCTGAGGCAA 57.435 40.909 0.00 0.00 35.54 4.52
1855 2260 0.449388 GGGAGCGATTTCAAGCACTG 59.551 55.000 0.00 0.00 35.48 3.66
1860 2265 0.453390 GCCAAGGGAGCGATTTCAAG 59.547 55.000 0.00 0.00 0.00 3.02
1868 2273 1.003839 TAACTGTGCCAAGGGAGCG 60.004 57.895 0.00 0.00 0.00 5.03
1953 2358 5.437060 ACACTCACCAGTATTGAAACAAGT 58.563 37.500 0.00 0.00 0.00 3.16
2153 2571 6.208644 ACAAAGGTTCTTTGTGATTGAATCG 58.791 36.000 20.81 0.00 40.70 3.34
2197 2615 6.803320 ACTTTGCATGAAAATCGTAGACAATG 59.197 34.615 0.00 0.00 42.51 2.82
2235 2653 0.608130 ACCGCATGCAGACTGTAAGA 59.392 50.000 19.57 0.00 37.43 2.10
2238 2656 0.108662 CTGACCGCATGCAGACTGTA 60.109 55.000 19.57 0.00 34.06 2.74
2242 2660 1.079543 ACTCTGACCGCATGCAGAC 60.080 57.895 19.57 7.53 36.31 3.51
2258 2676 4.833478 AACTGATGCATACAGAAGGACT 57.167 40.909 24.04 6.19 38.55 3.85
2359 2858 7.436673 CCCTCAAAAACATTGTTTCGTTATTCA 59.563 33.333 14.80 0.00 0.00 2.57
2360 2859 7.650104 TCCCTCAAAAACATTGTTTCGTTATTC 59.350 33.333 14.80 0.00 0.00 1.75
2367 2866 6.101650 AGGATCCCTCAAAAACATTGTTTC 57.898 37.500 14.80 0.04 0.00 2.78
2368 2867 7.610580 TTAGGATCCCTCAAAAACATTGTTT 57.389 32.000 8.55 8.97 34.61 2.83
2371 2870 7.232118 ACTTTAGGATCCCTCAAAAACATTG 57.768 36.000 8.55 0.00 34.61 2.82
2425 2924 5.899299 AGATGTTGAAATTAAGCCAGATGC 58.101 37.500 0.00 0.00 41.71 3.91
2455 2954 2.945008 CGAGTGGACAATACATGGCATT 59.055 45.455 0.00 0.00 39.66 3.56
2468 2967 5.856126 TGAAACATACAAATCGAGTGGAC 57.144 39.130 0.00 0.00 0.00 4.02
2566 3069 8.067488 TCTATGACCCATATAATGCATAGAGGA 58.933 37.037 0.00 0.00 39.24 3.71
2648 3152 4.184629 ACACAAGCCTTGATCGAAGATAC 58.815 43.478 12.25 0.00 45.12 2.24
2658 3162 5.647658 CCTACATAATCAACACAAGCCTTGA 59.352 40.000 12.25 0.00 0.00 3.02
2659 3163 5.163622 CCCTACATAATCAACACAAGCCTTG 60.164 44.000 2.11 2.11 0.00 3.61
2666 3170 6.821665 GCTAAACTCCCTACATAATCAACACA 59.178 38.462 0.00 0.00 0.00 3.72
2690 3194 1.683385 ACTTGACCAGCCTTTGAAAGC 59.317 47.619 0.00 0.00 0.00 3.51
2736 3240 8.875803 TGTACAAGCACCTATAAACGAAATAAG 58.124 33.333 0.00 0.00 0.00 1.73
2981 3487 5.189736 ACTTAACTGATGGAGTAATCTGGCA 59.810 40.000 0.00 0.00 33.09 4.92
2982 3488 5.525378 CACTTAACTGATGGAGTAATCTGGC 59.475 44.000 0.00 0.00 33.09 4.85
3023 3529 0.181350 GCCATTAGCCCAGCACTACT 59.819 55.000 0.00 0.00 34.35 2.57
3047 3553 4.332268 GGTTAGCAAATCAAGCAGAGAGAG 59.668 45.833 0.00 0.00 0.00 3.20
3079 3585 3.517296 TGCCAGGGAATGTGAAAGTTA 57.483 42.857 0.00 0.00 0.00 2.24
3103 3609 6.158598 TCATTCACTAAGAATTTGCTTTGGC 58.841 36.000 0.00 0.00 44.48 4.52
3141 3647 3.053544 TGACCAGTTTAACCCCTCACAAA 60.054 43.478 0.00 0.00 0.00 2.83
3241 3747 9.394477 GTGAATGGTTAACACTGAAATTAACTC 57.606 33.333 8.10 0.00 39.93 3.01
3311 3817 9.102757 GCTTGTCTTTCATCATAACTAAGATGA 57.897 33.333 0.00 0.00 46.38 2.92
3332 3838 2.031157 GCCAACGACATAACTTGCTTGT 60.031 45.455 0.00 0.00 0.00 3.16
3388 3894 8.401709 TGCTCTCTTTCTTTCTTTCTTTCTTTC 58.598 33.333 0.00 0.00 0.00 2.62
3390 3896 7.872113 TGCTCTCTTTCTTTCTTTCTTTCTT 57.128 32.000 0.00 0.00 0.00 2.52
3392 3898 7.114670 GCAATGCTCTCTTTCTTTCTTTCTTTC 59.885 37.037 0.00 0.00 0.00 2.62
3395 3901 5.769162 AGCAATGCTCTCTTTCTTTCTTTCT 59.231 36.000 0.00 0.00 30.62 2.52
3396 3902 5.857517 CAGCAATGCTCTCTTTCTTTCTTTC 59.142 40.000 4.03 0.00 36.40 2.62
3397 3903 5.301298 ACAGCAATGCTCTCTTTCTTTCTTT 59.699 36.000 4.03 0.00 36.40 2.52
3398 3904 4.826183 ACAGCAATGCTCTCTTTCTTTCTT 59.174 37.500 4.03 0.00 36.40 2.52
3399 3905 4.396522 ACAGCAATGCTCTCTTTCTTTCT 58.603 39.130 4.03 0.00 36.40 2.52
3400 3906 4.762956 ACAGCAATGCTCTCTTTCTTTC 57.237 40.909 4.03 0.00 36.40 2.62
3406 3912 3.952931 AGATCAACAGCAATGCTCTCTT 58.047 40.909 4.03 0.00 36.40 2.85
3408 3914 4.213694 CCATAGATCAACAGCAATGCTCTC 59.786 45.833 4.03 0.00 36.40 3.20
3442 3949 1.949525 GCCACTGAGAGCAAAGTTTCA 59.050 47.619 0.00 0.00 0.00 2.69
3465 3972 5.601583 TGAAATCACCCATCCATCATTTG 57.398 39.130 0.00 0.00 0.00 2.32
3469 3976 4.338964 CGAAATGAAATCACCCATCCATCA 59.661 41.667 0.00 0.00 0.00 3.07
3480 3987 3.820467 AGAACCAGTGCGAAATGAAATCA 59.180 39.130 0.00 0.00 0.00 2.57
3527 4034 4.155449 GCAGATGTAAACATTTTTCGCGA 58.845 39.130 3.71 3.71 36.57 5.87
3596 4103 7.541091 GTGCAATATCAGCCAAATCAATATCAG 59.459 37.037 0.00 0.00 0.00 2.90
3611 4118 1.945394 GAGGCTGTGGTGCAATATCAG 59.055 52.381 0.00 0.00 34.04 2.90
3639 4146 0.745845 CCAGATGCTACACCACAGGC 60.746 60.000 0.00 0.00 0.00 4.85
3640 4147 0.904649 TCCAGATGCTACACCACAGG 59.095 55.000 0.00 0.00 0.00 4.00
3641 4148 1.827344 TCTCCAGATGCTACACCACAG 59.173 52.381 0.00 0.00 0.00 3.66
3642 4149 1.550524 GTCTCCAGATGCTACACCACA 59.449 52.381 0.00 0.00 0.00 4.17
3643 4150 1.550524 TGTCTCCAGATGCTACACCAC 59.449 52.381 0.00 0.00 0.00 4.16
3651 4158 0.901124 AGTGAGGTGTCTCCAGATGC 59.099 55.000 0.00 0.00 39.23 3.91
3667 4174 3.742433 AGACAGAAGGTGAAGTCAGTG 57.258 47.619 0.00 0.00 33.56 3.66
3700 4207 7.138081 CACACACATGTTTAGTTCAGCAAATA 58.862 34.615 0.00 0.00 36.72 1.40
3701 4208 5.978919 CACACACATGTTTAGTTCAGCAAAT 59.021 36.000 0.00 0.00 36.72 2.32
3725 4232 5.567552 CAAGTACTACTAGCGTAACAGTCC 58.432 45.833 0.00 0.00 0.00 3.85
3737 4244 5.047519 GGAAACAGGACAGCAAGTACTACTA 60.048 44.000 0.00 0.00 40.32 1.82
3748 4255 2.617274 GGCACGGAAACAGGACAGC 61.617 63.158 0.00 0.00 0.00 4.40
3789 4659 1.702182 TTGACAGCAAAATGAGCCCA 58.298 45.000 0.00 0.00 0.00 5.36
3797 4667 4.686191 ATGGTCCAATTTGACAGCAAAA 57.314 36.364 11.43 0.00 46.19 2.44
3809 4679 1.347062 ACGCCCAAAAATGGTCCAAT 58.653 45.000 0.00 0.00 0.00 3.16
3814 4684 0.467804 AAGCAACGCCCAAAAATGGT 59.532 45.000 0.00 0.00 0.00 3.55
3827 4697 0.668535 AAGGCCGAAACTGAAGCAAC 59.331 50.000 0.00 0.00 0.00 4.17
3853 4723 4.081420 CCACCTAGCAATGACTACAAGAGT 60.081 45.833 0.00 0.00 42.90 3.24
3858 4728 4.090819 TGTACCACCTAGCAATGACTACA 58.909 43.478 0.00 0.00 0.00 2.74
3902 4772 4.288626 AGCATAGAGAACACCCAAGGTAAA 59.711 41.667 0.00 0.00 32.11 2.01
3909 4779 0.253044 GGCAGCATAGAGAACACCCA 59.747 55.000 0.00 0.00 0.00 4.51
3914 4784 1.484240 ACAGAGGGCAGCATAGAGAAC 59.516 52.381 0.00 0.00 0.00 3.01
3929 4799 2.544486 GGCACTGCCTTTTTCAACAGAG 60.544 50.000 13.28 0.00 46.69 3.35
3930 4800 1.408702 GGCACTGCCTTTTTCAACAGA 59.591 47.619 13.28 0.00 46.69 3.41
3931 4801 1.856802 GGCACTGCCTTTTTCAACAG 58.143 50.000 13.28 0.00 46.69 3.16
3949 4819 2.134287 TGCCTAAGCGCCTCCTAGG 61.134 63.158 2.29 10.84 44.31 3.02
3950 4820 1.068250 GTGCCTAAGCGCCTCCTAG 59.932 63.158 2.29 0.00 44.01 3.02
3951 4821 3.217231 GTGCCTAAGCGCCTCCTA 58.783 61.111 2.29 0.00 44.01 2.94
3957 4827 2.962253 CTAGGCGTGCCTAAGCGC 60.962 66.667 20.38 0.00 46.84 5.92
3958 4828 2.279517 CCTAGGCGTGCCTAAGCG 60.280 66.667 20.38 9.85 46.84 4.68
3959 4829 2.589159 GCCTAGGCGTGCCTAAGC 60.589 66.667 21.97 21.97 46.84 3.09
3971 4841 1.963338 GCCATTGCCTAGCGCCTAG 60.963 63.158 2.29 5.30 36.24 3.02
3972 4842 2.111043 GCCATTGCCTAGCGCCTA 59.889 61.111 2.29 0.00 36.24 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.