Multiple sequence alignment - TraesCS2D01G465700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G465700 chr2D 100.000 1454 0 0 1 1454 571539245 571537792 0.000000e+00 2686.0
1 TraesCS2D01G465700 chr2D 100.000 1207 0 0 1796 3002 571537450 571536244 0.000000e+00 2230.0
2 TraesCS2D01G465700 chr2D 85.805 1099 73 29 410 1452 571459139 571458068 0.000000e+00 1088.0
3 TraesCS2D01G465700 chr2D 84.483 812 40 39 1796 2579 571457964 571457211 0.000000e+00 723.0
4 TraesCS2D01G465700 chr2D 85.597 243 13 7 2549 2780 571457197 571456966 5.000000e-58 235.0
5 TraesCS2D01G465700 chr2D 73.515 808 124 53 659 1450 606694300 606695033 1.080000e-54 224.0
6 TraesCS2D01G465700 chr2D 83.146 178 13 5 1867 2044 606695548 606695708 2.410000e-31 147.0
7 TraesCS2D01G465700 chr2D 89.796 98 9 1 2794 2890 571456981 571456884 1.130000e-24 124.0
8 TraesCS2D01G465700 chr2D 97.143 70 2 0 1385 1454 571458033 571457964 5.260000e-23 119.0
9 TraesCS2D01G465700 chr2B 88.753 1147 61 31 359 1454 683173023 683171894 0.000000e+00 1341.0
10 TraesCS2D01G465700 chr2B 84.977 659 33 36 1810 2412 683171516 683170868 2.560000e-170 608.0
11 TraesCS2D01G465700 chr2B 74.074 756 113 47 659 1395 738409908 738410599 1.800000e-57 233.0
12 TraesCS2D01G465700 chr2A 86.549 1249 86 41 261 1454 710266108 710264887 0.000000e+00 1301.0
13 TraesCS2D01G465700 chr2A 82.847 583 41 32 1875 2412 710264451 710263883 4.530000e-128 468.0
14 TraesCS2D01G465700 chr2A 86.124 209 15 4 2794 3002 710263784 710263590 2.340000e-51 213.0
15 TraesCS2D01G465700 chr2A 75.810 463 73 19 999 1450 738342033 738342467 6.560000e-47 198.0
16 TraesCS2D01G465700 chr2A 85.401 137 11 2 1867 2003 738342968 738343095 1.880000e-27 134.0
17 TraesCS2D01G465700 chr6B 100.000 28 0 0 1 28 658468489 658468516 5.000000e-03 52.8
18 TraesCS2D01G465700 chr6B 100.000 28 0 0 1 28 658487274 658487301 5.000000e-03 52.8
19 TraesCS2D01G465700 chr5D 100.000 28 0 0 1 28 27913911 27913938 5.000000e-03 52.8
20 TraesCS2D01G465700 chr5B 100.000 28 0 0 1 28 96255613 96255640 5.000000e-03 52.8
21 TraesCS2D01G465700 chr4B 100.000 28 0 0 1 28 350532887 350532860 5.000000e-03 52.8
22 TraesCS2D01G465700 chr4B 96.774 31 1 0 1 31 651678467 651678437 5.000000e-03 52.8
23 TraesCS2D01G465700 chr3B 100.000 28 0 0 1 28 379116888 379116861 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G465700 chr2D 571536244 571539245 3001 True 2458.000000 2686 100.000000 1 3002 2 chr2D.!!$R2 3001
1 TraesCS2D01G465700 chr2D 571456884 571459139 2255 True 457.800000 1088 88.564800 410 2890 5 chr2D.!!$R1 2480
2 TraesCS2D01G465700 chr2B 683170868 683173023 2155 True 974.500000 1341 86.865000 359 2412 2 chr2B.!!$R1 2053
3 TraesCS2D01G465700 chr2B 738409908 738410599 691 False 233.000000 233 74.074000 659 1395 1 chr2B.!!$F1 736
4 TraesCS2D01G465700 chr2A 710263590 710266108 2518 True 660.666667 1301 85.173333 261 3002 3 chr2A.!!$R1 2741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.040058 TCCAACCTTGATGCTGCCAT 59.96 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2563 0.110056 CATTGTTGCGTGTGCTCCTC 60.11 55.0 0.0 0.0 43.34 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.976758 ACGCCTACCGCTTTTTCC 58.023 55.556 0.00 0.00 41.76 3.13
18 19 1.071814 ACGCCTACCGCTTTTTCCA 59.928 52.632 0.00 0.00 41.76 3.53
19 20 0.535553 ACGCCTACCGCTTTTTCCAA 60.536 50.000 0.00 0.00 41.76 3.53
20 21 0.109919 CGCCTACCGCTTTTTCCAAC 60.110 55.000 0.00 0.00 34.21 3.77
21 22 0.242825 GCCTACCGCTTTTTCCAACC 59.757 55.000 0.00 0.00 0.00 3.77
22 23 1.905637 CCTACCGCTTTTTCCAACCT 58.094 50.000 0.00 0.00 0.00 3.50
23 24 2.235891 CCTACCGCTTTTTCCAACCTT 58.764 47.619 0.00 0.00 0.00 3.50
24 25 2.030274 CCTACCGCTTTTTCCAACCTTG 60.030 50.000 0.00 0.00 0.00 3.61
25 26 1.770294 ACCGCTTTTTCCAACCTTGA 58.230 45.000 0.00 0.00 0.00 3.02
26 27 2.316108 ACCGCTTTTTCCAACCTTGAT 58.684 42.857 0.00 0.00 0.00 2.57
27 28 2.035832 ACCGCTTTTTCCAACCTTGATG 59.964 45.455 0.00 0.00 0.00 3.07
28 29 2.061028 CGCTTTTTCCAACCTTGATGC 58.939 47.619 0.00 0.00 0.00 3.91
29 30 2.288395 CGCTTTTTCCAACCTTGATGCT 60.288 45.455 0.00 0.00 0.00 3.79
30 31 3.062042 GCTTTTTCCAACCTTGATGCTG 58.938 45.455 0.00 0.00 0.00 4.41
31 32 2.818130 TTTTCCAACCTTGATGCTGC 57.182 45.000 0.00 0.00 0.00 5.25
32 33 0.968405 TTTCCAACCTTGATGCTGCC 59.032 50.000 0.00 0.00 0.00 4.85
33 34 0.178967 TTCCAACCTTGATGCTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
34 35 0.040058 TCCAACCTTGATGCTGCCAT 59.960 50.000 0.00 0.00 0.00 4.40
35 36 0.174845 CCAACCTTGATGCTGCCATG 59.825 55.000 0.00 0.00 0.00 3.66
36 37 1.179152 CAACCTTGATGCTGCCATGA 58.821 50.000 0.00 0.00 0.00 3.07
37 38 1.754803 CAACCTTGATGCTGCCATGAT 59.245 47.619 0.00 0.00 0.00 2.45
38 39 2.154567 ACCTTGATGCTGCCATGATT 57.845 45.000 0.00 0.00 0.00 2.57
39 40 1.754803 ACCTTGATGCTGCCATGATTG 59.245 47.619 0.00 0.00 0.00 2.67
40 41 2.028876 CCTTGATGCTGCCATGATTGA 58.971 47.619 0.00 0.00 0.00 2.57
41 42 2.628178 CCTTGATGCTGCCATGATTGAT 59.372 45.455 0.00 0.00 0.00 2.57
42 43 3.069586 CCTTGATGCTGCCATGATTGATT 59.930 43.478 0.00 0.00 0.00 2.57
43 44 4.279922 CCTTGATGCTGCCATGATTGATTA 59.720 41.667 0.00 0.00 0.00 1.75
44 45 5.047306 CCTTGATGCTGCCATGATTGATTAT 60.047 40.000 0.00 0.00 0.00 1.28
45 46 5.385509 TGATGCTGCCATGATTGATTATG 57.614 39.130 0.00 0.00 0.00 1.90
46 47 5.074115 TGATGCTGCCATGATTGATTATGA 58.926 37.500 0.00 0.00 0.00 2.15
47 48 5.536916 TGATGCTGCCATGATTGATTATGAA 59.463 36.000 0.00 0.00 0.00 2.57
48 49 6.210584 TGATGCTGCCATGATTGATTATGAAT 59.789 34.615 0.00 0.00 0.00 2.57
49 50 7.394923 TGATGCTGCCATGATTGATTATGAATA 59.605 33.333 0.00 0.00 0.00 1.75
50 51 7.153217 TGCTGCCATGATTGATTATGAATAG 57.847 36.000 0.00 0.00 0.00 1.73
51 52 6.943718 TGCTGCCATGATTGATTATGAATAGA 59.056 34.615 0.00 0.00 0.00 1.98
52 53 7.614192 TGCTGCCATGATTGATTATGAATAGAT 59.386 33.333 0.00 0.00 0.00 1.98
53 54 8.467598 GCTGCCATGATTGATTATGAATAGATT 58.532 33.333 0.00 0.00 0.00 2.40
90 91 4.843220 AAAAGTGCTCCAACAGATTCTG 57.157 40.909 12.17 12.17 37.52 3.02
92 93 4.623932 AAGTGCTCCAACAGATTCTGTA 57.376 40.909 19.27 3.81 44.62 2.74
93 94 4.623932 AGTGCTCCAACAGATTCTGTAA 57.376 40.909 19.27 7.80 44.62 2.41
94 95 4.973168 AGTGCTCCAACAGATTCTGTAAA 58.027 39.130 19.27 7.48 44.62 2.01
95 96 4.757149 AGTGCTCCAACAGATTCTGTAAAC 59.243 41.667 19.27 11.12 44.62 2.01
96 97 4.072131 TGCTCCAACAGATTCTGTAAACC 58.928 43.478 19.27 8.21 44.62 3.27
97 98 4.202461 TGCTCCAACAGATTCTGTAAACCT 60.202 41.667 19.27 0.93 44.62 3.50
98 99 4.154918 GCTCCAACAGATTCTGTAAACCTG 59.845 45.833 19.27 12.95 44.62 4.00
99 100 5.551233 CTCCAACAGATTCTGTAAACCTGA 58.449 41.667 19.27 8.98 44.62 3.86
100 101 6.126863 TCCAACAGATTCTGTAAACCTGAT 57.873 37.500 19.27 0.00 44.62 2.90
101 102 6.542821 TCCAACAGATTCTGTAAACCTGATT 58.457 36.000 19.27 0.00 44.62 2.57
102 103 7.004086 TCCAACAGATTCTGTAAACCTGATTT 58.996 34.615 19.27 0.00 44.62 2.17
103 104 7.505585 TCCAACAGATTCTGTAAACCTGATTTT 59.494 33.333 19.27 0.00 44.62 1.82
104 105 8.143835 CCAACAGATTCTGTAAACCTGATTTTT 58.856 33.333 19.27 0.00 44.62 1.94
127 128 6.889301 TTTACGGGATCTCGTATAATCTGT 57.111 37.500 27.43 1.19 43.77 3.41
128 129 6.492007 TTACGGGATCTCGTATAATCTGTC 57.508 41.667 27.43 0.00 43.77 3.51
129 130 3.757493 ACGGGATCTCGTATAATCTGTCC 59.243 47.826 21.43 0.00 41.98 4.02
130 131 3.756963 CGGGATCTCGTATAATCTGTCCA 59.243 47.826 6.88 0.00 0.00 4.02
131 132 4.217767 CGGGATCTCGTATAATCTGTCCAA 59.782 45.833 6.88 0.00 0.00 3.53
132 133 5.105716 CGGGATCTCGTATAATCTGTCCAAT 60.106 44.000 6.88 0.00 0.00 3.16
133 134 6.572509 CGGGATCTCGTATAATCTGTCCAATT 60.573 42.308 6.88 0.00 0.00 2.32
134 135 7.162082 GGGATCTCGTATAATCTGTCCAATTT 58.838 38.462 0.00 0.00 0.00 1.82
135 136 7.332182 GGGATCTCGTATAATCTGTCCAATTTC 59.668 40.741 0.00 0.00 0.00 2.17
136 137 8.091449 GGATCTCGTATAATCTGTCCAATTTCT 58.909 37.037 0.00 0.00 0.00 2.52
137 138 9.134734 GATCTCGTATAATCTGTCCAATTTCTC 57.865 37.037 0.00 0.00 0.00 2.87
138 139 8.239038 TCTCGTATAATCTGTCCAATTTCTCT 57.761 34.615 0.00 0.00 0.00 3.10
139 140 8.696374 TCTCGTATAATCTGTCCAATTTCTCTT 58.304 33.333 0.00 0.00 0.00 2.85
140 141 8.648557 TCGTATAATCTGTCCAATTTCTCTTG 57.351 34.615 0.00 0.00 0.00 3.02
141 142 8.258007 TCGTATAATCTGTCCAATTTCTCTTGT 58.742 33.333 0.00 0.00 0.00 3.16
142 143 9.529325 CGTATAATCTGTCCAATTTCTCTTGTA 57.471 33.333 0.00 0.00 0.00 2.41
145 146 9.911788 ATAATCTGTCCAATTTCTCTTGTACAT 57.088 29.630 0.00 0.00 26.69 2.29
146 147 8.641498 AATCTGTCCAATTTCTCTTGTACATT 57.359 30.769 0.00 0.00 26.69 2.71
147 148 8.641498 ATCTGTCCAATTTCTCTTGTACATTT 57.359 30.769 0.00 0.00 26.69 2.32
148 149 9.739276 ATCTGTCCAATTTCTCTTGTACATTTA 57.261 29.630 0.00 0.00 26.69 1.40
149 150 9.219603 TCTGTCCAATTTCTCTTGTACATTTAG 57.780 33.333 0.00 0.00 26.69 1.85
150 151 8.335532 TGTCCAATTTCTCTTGTACATTTAGG 57.664 34.615 0.00 0.00 0.00 2.69
151 152 8.160765 TGTCCAATTTCTCTTGTACATTTAGGA 58.839 33.333 0.00 0.00 0.00 2.94
152 153 8.669243 GTCCAATTTCTCTTGTACATTTAGGAG 58.331 37.037 0.00 0.68 0.00 3.69
153 154 8.602424 TCCAATTTCTCTTGTACATTTAGGAGA 58.398 33.333 0.00 3.03 0.00 3.71
154 155 9.231297 CCAATTTCTCTTGTACATTTAGGAGAA 57.769 33.333 15.24 15.24 37.82 2.87
158 159 9.658799 TTTCTCTTGTACATTTAGGAGAAGATG 57.341 33.333 16.97 0.00 39.74 2.90
159 160 8.595362 TCTCTTGTACATTTAGGAGAAGATGA 57.405 34.615 0.00 0.00 0.00 2.92
160 161 8.470805 TCTCTTGTACATTTAGGAGAAGATGAC 58.529 37.037 0.00 0.00 0.00 3.06
161 162 7.556844 TCTTGTACATTTAGGAGAAGATGACC 58.443 38.462 0.00 0.00 0.00 4.02
162 163 6.235231 TGTACATTTAGGAGAAGATGACCC 57.765 41.667 0.00 0.00 0.00 4.46
163 164 5.964477 TGTACATTTAGGAGAAGATGACCCT 59.036 40.000 0.00 0.00 0.00 4.34
164 165 6.443849 TGTACATTTAGGAGAAGATGACCCTT 59.556 38.462 0.00 0.00 0.00 3.95
165 166 5.995446 ACATTTAGGAGAAGATGACCCTTC 58.005 41.667 0.00 0.00 42.07 3.46
166 167 5.104318 ACATTTAGGAGAAGATGACCCTTCC 60.104 44.000 0.00 0.00 42.58 3.46
167 168 2.959421 AGGAGAAGATGACCCTTCCT 57.041 50.000 0.00 0.00 42.58 3.36
168 169 2.476199 AGGAGAAGATGACCCTTCCTG 58.524 52.381 0.00 0.00 42.58 3.86
169 170 2.192263 GGAGAAGATGACCCTTCCTGT 58.808 52.381 0.00 0.00 42.58 4.00
170 171 3.012959 AGGAGAAGATGACCCTTCCTGTA 59.987 47.826 0.00 0.00 42.58 2.74
171 172 3.133183 GGAGAAGATGACCCTTCCTGTAC 59.867 52.174 0.00 0.00 42.58 2.90
172 173 3.108376 AGAAGATGACCCTTCCTGTACC 58.892 50.000 0.00 0.00 42.58 3.34
173 174 2.642171 AGATGACCCTTCCTGTACCA 57.358 50.000 0.00 0.00 0.00 3.25
174 175 2.188817 AGATGACCCTTCCTGTACCAC 58.811 52.381 0.00 0.00 0.00 4.16
175 176 1.906574 GATGACCCTTCCTGTACCACA 59.093 52.381 0.00 0.00 0.00 4.17
176 177 2.038863 TGACCCTTCCTGTACCACAT 57.961 50.000 0.00 0.00 0.00 3.21
177 178 1.906574 TGACCCTTCCTGTACCACATC 59.093 52.381 0.00 0.00 0.00 3.06
178 179 1.906574 GACCCTTCCTGTACCACATCA 59.093 52.381 0.00 0.00 0.00 3.07
179 180 2.304761 GACCCTTCCTGTACCACATCAA 59.695 50.000 0.00 0.00 0.00 2.57
180 181 2.039879 ACCCTTCCTGTACCACATCAAC 59.960 50.000 0.00 0.00 0.00 3.18
181 182 2.346803 CCTTCCTGTACCACATCAACG 58.653 52.381 0.00 0.00 0.00 4.10
182 183 1.732259 CTTCCTGTACCACATCAACGC 59.268 52.381 0.00 0.00 0.00 4.84
183 184 0.389296 TCCTGTACCACATCAACGCG 60.389 55.000 3.53 3.53 0.00 6.01
184 185 0.669318 CCTGTACCACATCAACGCGT 60.669 55.000 5.58 5.58 0.00 6.01
185 186 0.713883 CTGTACCACATCAACGCGTC 59.286 55.000 14.44 0.00 0.00 5.19
186 187 1.004785 TGTACCACATCAACGCGTCG 61.005 55.000 14.44 0.00 0.00 5.12
187 188 2.089936 TACCACATCAACGCGTCGC 61.090 57.895 14.44 7.29 0.00 5.19
188 189 4.147322 CCACATCAACGCGTCGCC 62.147 66.667 14.44 0.00 0.00 5.54
189 190 3.410516 CACATCAACGCGTCGCCA 61.411 61.111 14.44 0.00 0.00 5.69
190 191 2.434185 ACATCAACGCGTCGCCAT 60.434 55.556 14.44 0.00 0.00 4.40
191 192 1.153726 ACATCAACGCGTCGCCATA 60.154 52.632 14.44 0.00 0.00 2.74
192 193 1.272715 CATCAACGCGTCGCCATAC 59.727 57.895 14.44 0.00 0.00 2.39
193 194 1.881252 ATCAACGCGTCGCCATACC 60.881 57.895 14.44 0.00 0.00 2.73
194 195 3.560278 CAACGCGTCGCCATACCC 61.560 66.667 14.44 0.00 0.00 3.69
195 196 4.071875 AACGCGTCGCCATACCCA 62.072 61.111 14.44 0.00 0.00 4.51
196 197 4.807039 ACGCGTCGCCATACCCAC 62.807 66.667 5.58 0.00 0.00 4.61
197 198 4.508128 CGCGTCGCCATACCCACT 62.508 66.667 12.44 0.00 0.00 4.00
198 199 2.890474 GCGTCGCCATACCCACTG 60.890 66.667 5.75 0.00 0.00 3.66
199 200 2.890474 CGTCGCCATACCCACTGC 60.890 66.667 0.00 0.00 0.00 4.40
200 201 2.267642 GTCGCCATACCCACTGCA 59.732 61.111 0.00 0.00 0.00 4.41
201 202 1.153168 GTCGCCATACCCACTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
202 203 1.146041 TCGCCATACCCACTGCATC 59.854 57.895 0.00 0.00 0.00 3.91
203 204 2.246739 CGCCATACCCACTGCATCG 61.247 63.158 0.00 0.00 0.00 3.84
204 205 2.546494 GCCATACCCACTGCATCGC 61.546 63.158 0.00 0.00 0.00 4.58
205 206 1.893808 CCATACCCACTGCATCGCC 60.894 63.158 0.00 0.00 0.00 5.54
206 207 2.108976 ATACCCACTGCATCGCCG 59.891 61.111 0.00 0.00 0.00 6.46
207 208 4.830765 TACCCACTGCATCGCCGC 62.831 66.667 0.00 0.00 0.00 6.53
211 212 3.857854 CACTGCATCGCCGCTGAC 61.858 66.667 9.19 0.00 35.10 3.51
216 217 2.583319 CATCGCCGCTGACGACAT 60.583 61.111 0.00 0.00 43.23 3.06
217 218 2.278857 ATCGCCGCTGACGACATC 60.279 61.111 0.00 0.00 43.23 3.06
218 219 3.774959 ATCGCCGCTGACGACATCC 62.775 63.158 0.00 0.00 43.23 3.51
224 225 3.250323 CTGACGACATCCGCGCTG 61.250 66.667 5.56 2.42 43.32 5.18
243 244 4.794439 CGCTGCCGGTCATCGACA 62.794 66.667 14.22 0.00 42.43 4.35
244 245 3.188786 GCTGCCGGTCATCGACAC 61.189 66.667 1.90 0.00 42.43 3.67
245 246 2.509336 CTGCCGGTCATCGACACC 60.509 66.667 1.90 5.43 42.43 4.16
250 251 2.879462 GGTCATCGACACCGCGTC 60.879 66.667 4.92 0.00 41.62 5.19
308 309 4.386652 CGCTGCTGCAAAAATATCACTTTT 59.613 37.500 16.29 0.00 39.64 2.27
310 311 6.237384 CGCTGCTGCAAAAATATCACTTTTAG 60.237 38.462 16.29 0.00 39.64 1.85
311 312 6.035327 GCTGCTGCAAAAATATCACTTTTAGG 59.965 38.462 11.11 0.00 39.41 2.69
312 313 7.225784 TGCTGCAAAAATATCACTTTTAGGA 57.774 32.000 0.00 0.00 0.00 2.94
313 314 7.315142 TGCTGCAAAAATATCACTTTTAGGAG 58.685 34.615 0.00 0.00 0.00 3.69
314 315 7.176515 TGCTGCAAAAATATCACTTTTAGGAGA 59.823 33.333 0.00 0.00 0.00 3.71
315 316 8.028938 GCTGCAAAAATATCACTTTTAGGAGAA 58.971 33.333 0.00 0.00 0.00 2.87
317 318 9.295825 TGCAAAAATATCACTTTTAGGAGAAGA 57.704 29.630 0.00 0.00 0.00 2.87
327 328 9.726438 TCACTTTTAGGAGAAGAAATTTAGAGG 57.274 33.333 0.00 0.00 0.00 3.69
328 329 9.726438 CACTTTTAGGAGAAGAAATTTAGAGGA 57.274 33.333 0.00 0.00 0.00 3.71
346 347 5.495640 AGAGGAATTGAGAAATCACCTCAC 58.504 41.667 18.20 3.39 43.06 3.51
347 348 4.593956 AGGAATTGAGAAATCACCTCACC 58.406 43.478 0.00 0.00 40.05 4.02
349 350 5.488919 AGGAATTGAGAAATCACCTCACCTA 59.511 40.000 0.00 0.00 40.05 3.08
350 351 6.159398 AGGAATTGAGAAATCACCTCACCTAT 59.841 38.462 0.00 0.00 40.05 2.57
351 352 6.261826 GGAATTGAGAAATCACCTCACCTATG 59.738 42.308 0.00 0.00 40.05 2.23
352 353 6.566079 ATTGAGAAATCACCTCACCTATGA 57.434 37.500 0.00 0.00 40.05 2.15
354 355 5.734720 TGAGAAATCACCTCACCTATGAAC 58.265 41.667 0.00 0.00 35.89 3.18
355 356 5.485353 TGAGAAATCACCTCACCTATGAACT 59.515 40.000 0.00 0.00 35.89 3.01
357 358 7.180229 TGAGAAATCACCTCACCTATGAACTTA 59.820 37.037 0.00 0.00 35.89 2.24
379 380 1.816074 TGGGCATCTCGTAAAACCAC 58.184 50.000 0.00 0.00 0.00 4.16
443 448 1.272784 TACGTGCGAACGTTCAGCAG 61.273 55.000 32.62 27.85 44.63 4.24
460 466 0.317160 CAGTGCTCCACGTCTGGTTA 59.683 55.000 0.00 0.00 39.64 2.85
527 537 1.151777 GGATACACATGCGTCCGTGG 61.152 60.000 0.00 0.00 37.45 4.94
536 546 2.674084 GCGTCCGTGGGTAACTTGC 61.674 63.158 0.00 0.00 0.00 4.01
557 567 1.202698 AGCGGGGCTGATTAATGAGAC 60.203 52.381 6.07 2.16 37.57 3.36
560 570 2.103094 CGGGGCTGATTAATGAGACTGA 59.897 50.000 7.75 0.00 0.00 3.41
582 594 1.578915 GCGTGCATGCAAACTTTATCG 59.421 47.619 24.58 19.45 34.15 2.92
626 661 4.125703 CACCCTATGCAGAAGAAGACATC 58.874 47.826 0.00 0.00 0.00 3.06
627 662 3.135530 ACCCTATGCAGAAGAAGACATCC 59.864 47.826 0.00 0.00 0.00 3.51
722 772 2.810852 GCTACTTCCATGCTAGATTGCC 59.189 50.000 0.00 0.00 0.00 4.52
723 773 3.745480 GCTACTTCCATGCTAGATTGCCA 60.745 47.826 0.00 0.00 0.00 4.92
737 788 4.829968 AGATTGCCAGGATCGATCATTAG 58.170 43.478 25.93 14.07 0.00 1.73
861 922 3.442996 CTCGTGATCCCGAGCTTTT 57.557 52.632 14.63 0.00 46.64 2.27
863 924 2.385463 CTCGTGATCCCGAGCTTTTCG 61.385 57.143 14.63 0.00 46.64 3.46
864 925 4.899433 CTCGTGATCCCGAGCTTTTCGT 62.899 54.545 14.63 0.00 46.64 3.85
865 926 5.566383 CTCGTGATCCCGAGCTTTTCGTA 62.566 52.174 14.63 0.00 46.64 3.43
866 927 6.792311 CTCGTGATCCCGAGCTTTTCGTAT 62.792 50.000 14.63 0.00 46.64 3.06
961 1041 3.721706 GGCCAGCCAGTAGCCAGT 61.722 66.667 3.12 0.00 46.34 4.00
962 1042 2.367202 GGCCAGCCAGTAGCCAGTA 61.367 63.158 3.12 0.00 46.34 2.74
963 1043 1.144936 GCCAGCCAGTAGCCAGTAG 59.855 63.158 0.00 0.00 45.47 2.57
964 1044 1.144936 CCAGCCAGTAGCCAGTAGC 59.855 63.158 0.00 0.00 45.47 3.58
965 1045 1.144936 CAGCCAGTAGCCAGTAGCC 59.855 63.158 0.00 0.00 45.47 3.93
966 1046 1.306141 AGCCAGTAGCCAGTAGCCA 60.306 57.895 0.00 0.00 45.47 4.75
982 1062 1.669115 CCACTGCGACCACTGAAGG 60.669 63.158 0.00 0.00 0.00 3.46
1124 1217 2.633481 ACTAACTCCTCGGAGCAGTTTT 59.367 45.455 18.75 4.94 45.54 2.43
1129 1222 0.512952 CCTCGGAGCAGTTTTGAACG 59.487 55.000 0.00 0.00 36.23 3.95
1146 1239 3.694072 TGAACGGGCAGGAATTGAATTAG 59.306 43.478 0.00 0.00 0.00 1.73
1151 1244 3.430790 GGGCAGGAATTGAATTAGTTGGC 60.431 47.826 11.34 11.34 0.00 4.52
1213 1317 4.996122 TGCTAATTTCCATGCACCTTTTTG 59.004 37.500 0.00 0.00 0.00 2.44
1251 1355 3.054508 AGGCCAAGAAGGAAGAGAATGAG 60.055 47.826 5.01 0.00 41.22 2.90
1260 1364 2.859273 AAGAGAATGAGGCCGGCGTG 62.859 60.000 28.98 0.00 0.00 5.34
2003 2564 3.377656 GGAGGTCCGCAACTGAGA 58.622 61.111 0.00 0.00 0.00 3.27
2004 2565 1.216710 GGAGGTCCGCAACTGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
2014 2575 1.005630 AACTGAGAGGAGCACACGC 60.006 57.895 0.00 0.00 38.99 5.34
2015 2576 1.748329 AACTGAGAGGAGCACACGCA 61.748 55.000 0.00 0.00 42.27 5.24
2016 2577 1.005748 CTGAGAGGAGCACACGCAA 60.006 57.895 0.00 0.00 42.27 4.85
2017 2578 1.287730 CTGAGAGGAGCACACGCAAC 61.288 60.000 0.00 0.00 42.27 4.17
2075 2646 2.821366 CTGCCGCCCAGTGCTTAG 60.821 66.667 0.00 0.00 36.79 2.18
2090 2661 0.029567 CTTAGCTACCCTGCGTCGAG 59.970 60.000 0.00 0.00 38.13 4.04
2116 2687 4.824166 GCATGCCGTTGCTCTGCG 62.824 66.667 6.36 0.00 39.57 5.18
2170 2753 4.396357 AATAAACATGGTCCCTGGTGAA 57.604 40.909 0.00 0.00 0.00 3.18
2172 2755 0.250727 AACATGGTCCCTGGTGAACG 60.251 55.000 0.00 0.00 0.00 3.95
2228 2820 2.639286 GTTGCACAGCGACCTTGG 59.361 61.111 0.00 0.00 36.99 3.61
2260 2858 1.358152 TCCCCTCCGTGTTCTTGAAT 58.642 50.000 0.00 0.00 0.00 2.57
2271 2872 6.706716 TCCGTGTTCTTGAATGTTTGTATGTA 59.293 34.615 0.00 0.00 0.00 2.29
2273 2874 7.307751 CCGTGTTCTTGAATGTTTGTATGTACT 60.308 37.037 0.00 0.00 0.00 2.73
2280 2881 8.500753 TTGAATGTTTGTATGTACTATGTCCC 57.499 34.615 0.00 0.00 0.00 4.46
2292 2895 7.144722 TGTACTATGTCCCGTATTAATACCG 57.855 40.000 17.91 12.25 0.00 4.02
2296 2899 1.344114 GTCCCGTATTAATACCGCCCA 59.656 52.381 17.91 0.00 0.00 5.36
2332 2938 5.948588 TCGTGGAATAAAATCACATTGGTG 58.051 37.500 0.00 0.00 46.66 4.17
2337 2945 6.165577 GGAATAAAATCACATTGGTGCACTT 58.834 36.000 17.98 1.18 44.87 3.16
2338 2946 7.039434 TGGAATAAAATCACATTGGTGCACTTA 60.039 33.333 17.98 5.30 44.87 2.24
2340 2948 9.369904 GAATAAAATCACATTGGTGCACTTAAT 57.630 29.630 17.98 14.50 44.87 1.40
2343 2951 4.963276 TCACATTGGTGCACTTAATAGC 57.037 40.909 17.98 0.00 44.87 2.97
2344 2952 3.694072 TCACATTGGTGCACTTAATAGCC 59.306 43.478 17.98 0.00 44.87 3.93
2347 2955 5.008019 CACATTGGTGCACTTAATAGCCTAG 59.992 44.000 17.98 7.48 38.37 3.02
2348 2956 4.837093 TTGGTGCACTTAATAGCCTAGT 57.163 40.909 17.98 0.00 0.00 2.57
2374 2988 3.751518 ACTCGGTGCACTTAATTCCTTT 58.248 40.909 17.98 0.00 0.00 3.11
2375 2989 3.502211 ACTCGGTGCACTTAATTCCTTTG 59.498 43.478 17.98 0.00 0.00 2.77
2376 2990 3.482436 TCGGTGCACTTAATTCCTTTGT 58.518 40.909 17.98 0.00 0.00 2.83
2378 2992 5.064558 TCGGTGCACTTAATTCCTTTGTTA 58.935 37.500 17.98 0.00 0.00 2.41
2379 2993 5.708230 TCGGTGCACTTAATTCCTTTGTTAT 59.292 36.000 17.98 0.00 0.00 1.89
2380 2994 6.027749 CGGTGCACTTAATTCCTTTGTTATC 58.972 40.000 17.98 0.00 0.00 1.75
2381 2995 6.348950 CGGTGCACTTAATTCCTTTGTTATCA 60.349 38.462 17.98 0.00 0.00 2.15
2382 2996 7.547227 GGTGCACTTAATTCCTTTGTTATCAT 58.453 34.615 17.98 0.00 0.00 2.45
2383 2997 7.702348 GGTGCACTTAATTCCTTTGTTATCATC 59.298 37.037 17.98 0.00 0.00 2.92
2384 2998 7.429340 GTGCACTTAATTCCTTTGTTATCATCG 59.571 37.037 10.32 0.00 0.00 3.84
2387 3001 8.122952 CACTTAATTCCTTTGTTATCATCGACC 58.877 37.037 0.00 0.00 0.00 4.79
2388 3002 7.827236 ACTTAATTCCTTTGTTATCATCGACCA 59.173 33.333 0.00 0.00 0.00 4.02
2389 3003 6.683974 AATTCCTTTGTTATCATCGACCAG 57.316 37.500 0.00 0.00 0.00 4.00
2392 3006 3.063997 CCTTTGTTATCATCGACCAGTGC 59.936 47.826 0.00 0.00 0.00 4.40
2396 3013 2.860735 GTTATCATCGACCAGTGCTGTC 59.139 50.000 0.00 0.00 0.00 3.51
2418 3035 6.035843 GTCTTTCAATGTTGCAAAGAACTGA 58.964 36.000 0.00 0.00 36.76 3.41
2424 3041 2.430332 TGTTGCAAAGAACTGAAAGGGG 59.570 45.455 0.00 0.00 39.30 4.79
2427 3044 2.175931 TGCAAAGAACTGAAAGGGGGTA 59.824 45.455 0.00 0.00 39.30 3.69
2438 3055 7.285340 ACTGAAAGGGGGTATAGAAATCTTT 57.715 36.000 0.00 0.00 39.30 2.52
2443 3060 6.189036 AGGGGGTATAGAAATCTTTACAGC 57.811 41.667 11.45 0.00 33.77 4.40
2448 3065 7.202066 GGGGTATAGAAATCTTTACAGCCACTA 60.202 40.741 11.45 0.00 33.77 2.74
2485 3102 0.294887 CGTAAGTTGATCGAGCGCAC 59.705 55.000 11.47 0.96 0.00 5.34
2486 3103 0.294887 GTAAGTTGATCGAGCGCACG 59.705 55.000 21.48 21.48 0.00 5.34
2497 3114 0.669625 GAGCGCACGGTAGGAACTTT 60.670 55.000 11.47 0.00 41.75 2.66
2498 3115 0.669625 AGCGCACGGTAGGAACTTTC 60.670 55.000 11.47 0.00 41.75 2.62
2501 3118 1.868498 CGCACGGTAGGAACTTTCAAA 59.132 47.619 0.00 0.00 41.75 2.69
2502 3119 2.349155 CGCACGGTAGGAACTTTCAAAC 60.349 50.000 0.00 0.00 41.75 2.93
2503 3120 2.876550 GCACGGTAGGAACTTTCAAACT 59.123 45.455 0.00 0.00 41.75 2.66
2504 3121 4.060205 GCACGGTAGGAACTTTCAAACTA 58.940 43.478 0.00 0.00 41.75 2.24
2505 3122 4.694037 GCACGGTAGGAACTTTCAAACTAT 59.306 41.667 0.00 0.00 41.75 2.12
2506 3123 5.180680 GCACGGTAGGAACTTTCAAACTATT 59.819 40.000 0.00 0.00 41.75 1.73
2507 3124 6.369615 GCACGGTAGGAACTTTCAAACTATTA 59.630 38.462 0.00 0.00 41.75 0.98
2508 3125 7.095102 GCACGGTAGGAACTTTCAAACTATTAA 60.095 37.037 0.00 0.00 41.75 1.40
2509 3126 8.225777 CACGGTAGGAACTTTCAAACTATTAAC 58.774 37.037 0.00 0.00 41.75 2.01
2510 3127 8.152898 ACGGTAGGAACTTTCAAACTATTAACT 58.847 33.333 0.00 0.00 41.75 2.24
2511 3128 9.643693 CGGTAGGAACTTTCAAACTATTAACTA 57.356 33.333 0.00 0.00 41.75 2.24
2567 3184 3.834610 AGTTCACGATAAACCAGAGACG 58.165 45.455 0.00 0.00 0.00 4.18
2585 3253 9.448294 CCAGAGACGTATAAGTACTAATTTGTC 57.552 37.037 0.00 2.67 0.00 3.18
2596 3264 6.838382 AGTACTAATTTGTCTCCTTTGGTGT 58.162 36.000 0.00 0.00 0.00 4.16
2617 3289 5.846473 GTGTTCTCAACGAAAATAAGAGTGC 59.154 40.000 0.00 0.00 32.41 4.40
2649 3321 0.951558 GACACAAATGAACCGCACCT 59.048 50.000 0.00 0.00 0.00 4.00
2659 3331 0.544223 AACCGCACCTACCATGCATA 59.456 50.000 0.00 0.00 43.57 3.14
2677 3361 4.191544 GCATATTTGCTCTACAGTCACCA 58.808 43.478 0.35 0.00 45.77 4.17
2678 3362 4.034510 GCATATTTGCTCTACAGTCACCAC 59.965 45.833 0.35 0.00 45.77 4.16
2679 3363 5.423015 CATATTTGCTCTACAGTCACCACT 58.577 41.667 0.00 0.00 0.00 4.00
2680 3364 6.573434 CATATTTGCTCTACAGTCACCACTA 58.427 40.000 0.00 0.00 0.00 2.74
2707 3391 0.724453 CATCGTGCAAAAACGGGTCG 60.724 55.000 0.00 0.00 43.73 4.79
2741 3425 1.561542 AGGTTTACTGGATCTGGCAGG 59.438 52.381 15.73 0.00 0.00 4.85
2749 3433 1.817099 GATCTGGCAGGAGCAACCG 60.817 63.158 15.73 0.00 44.61 4.44
2775 3459 4.142902 CGACTGTCGCTCAAAATGGTAATT 60.143 41.667 17.94 0.00 31.14 1.40
2780 3464 4.857037 GTCGCTCAAAATGGTAATTGGAAC 59.143 41.667 0.00 0.00 0.00 3.62
2781 3465 4.082463 TCGCTCAAAATGGTAATTGGAACC 60.082 41.667 0.00 0.00 37.53 3.62
2782 3466 4.503910 GCTCAAAATGGTAATTGGAACCC 58.496 43.478 0.00 0.00 36.06 4.11
2783 3467 4.622933 GCTCAAAATGGTAATTGGAACCCC 60.623 45.833 0.00 0.00 36.06 4.95
2784 3468 3.511934 TCAAAATGGTAATTGGAACCCCG 59.488 43.478 0.00 0.00 36.06 5.73
2785 3469 1.480789 AATGGTAATTGGAACCCCGC 58.519 50.000 0.00 0.00 36.06 6.13
2786 3470 0.333312 ATGGTAATTGGAACCCCGCA 59.667 50.000 0.00 0.00 36.06 5.69
2787 3471 0.112606 TGGTAATTGGAACCCCGCAA 59.887 50.000 0.00 0.00 36.06 4.85
2788 3472 1.258676 GGTAATTGGAACCCCGCAAA 58.741 50.000 0.00 0.00 34.29 3.68
2789 3473 1.203758 GGTAATTGGAACCCCGCAAAG 59.796 52.381 0.00 0.00 34.29 2.77
2790 3474 2.164338 GTAATTGGAACCCCGCAAAGA 58.836 47.619 0.00 0.00 34.29 2.52
2791 3475 1.710816 AATTGGAACCCCGCAAAGAA 58.289 45.000 0.00 0.00 34.29 2.52
2792 3476 1.710816 ATTGGAACCCCGCAAAGAAA 58.289 45.000 0.00 0.00 34.29 2.52
2793 3477 1.486211 TTGGAACCCCGCAAAGAAAA 58.514 45.000 0.00 0.00 34.29 2.29
2794 3478 1.486211 TGGAACCCCGCAAAGAAAAA 58.514 45.000 0.00 0.00 34.29 1.94
2872 3557 4.021016 GTCACTGTCACTGTCCTTATCCTT 60.021 45.833 0.00 0.00 0.00 3.36
2890 3575 1.821136 CTTGGTGGCAGGGAAATCTTC 59.179 52.381 0.00 0.00 0.00 2.87
2911 3596 8.853077 TCTTCCATTTGATTATATAGCAGTGG 57.147 34.615 0.00 11.13 0.00 4.00
2922 3607 9.944376 GATTATATAGCAGTGGAAATGTAAGGA 57.056 33.333 0.00 0.00 32.28 3.36
2929 3614 7.749666 AGCAGTGGAAATGTAAGGACATATAT 58.250 34.615 0.00 0.00 45.93 0.86
2940 3625 8.662781 TGTAAGGACATATATTCAACTCAAGC 57.337 34.615 0.00 0.00 0.00 4.01
2958 3643 1.373435 CACGTAGGGGTTGGAAGCA 59.627 57.895 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.242825 GGTTGGAAAAAGCGGTAGGC 59.757 55.000 0.00 0.00 44.05 3.93
3 4 1.905637 AGGTTGGAAAAAGCGGTAGG 58.094 50.000 0.00 0.00 0.00 3.18
4 5 2.882137 TCAAGGTTGGAAAAAGCGGTAG 59.118 45.455 0.00 0.00 0.00 3.18
5 6 2.933573 TCAAGGTTGGAAAAAGCGGTA 58.066 42.857 0.00 0.00 0.00 4.02
6 7 1.770294 TCAAGGTTGGAAAAAGCGGT 58.230 45.000 0.00 0.00 0.00 5.68
7 8 2.676076 CATCAAGGTTGGAAAAAGCGG 58.324 47.619 0.00 0.00 0.00 5.52
8 9 2.061028 GCATCAAGGTTGGAAAAAGCG 58.939 47.619 0.00 0.00 0.00 4.68
9 10 3.062042 CAGCATCAAGGTTGGAAAAAGC 58.938 45.455 0.00 0.00 0.00 3.51
10 11 3.062042 GCAGCATCAAGGTTGGAAAAAG 58.938 45.455 0.00 0.00 0.00 2.27
11 12 2.224257 GGCAGCATCAAGGTTGGAAAAA 60.224 45.455 0.00 0.00 0.00 1.94
12 13 1.344114 GGCAGCATCAAGGTTGGAAAA 59.656 47.619 0.00 0.00 0.00 2.29
13 14 0.968405 GGCAGCATCAAGGTTGGAAA 59.032 50.000 0.00 0.00 0.00 3.13
14 15 0.178967 TGGCAGCATCAAGGTTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
15 16 0.040058 ATGGCAGCATCAAGGTTGGA 59.960 50.000 0.00 0.00 0.00 3.53
16 17 0.174845 CATGGCAGCATCAAGGTTGG 59.825 55.000 0.00 0.00 0.00 3.77
17 18 1.179152 TCATGGCAGCATCAAGGTTG 58.821 50.000 0.00 0.00 0.00 3.77
18 19 2.154567 ATCATGGCAGCATCAAGGTT 57.845 45.000 0.00 0.00 0.00 3.50
19 20 1.754803 CAATCATGGCAGCATCAAGGT 59.245 47.619 0.00 0.00 0.00 3.50
20 21 2.028876 TCAATCATGGCAGCATCAAGG 58.971 47.619 0.00 0.00 0.00 3.61
21 22 4.322080 AATCAATCATGGCAGCATCAAG 57.678 40.909 0.00 0.00 0.00 3.02
22 23 5.536916 TCATAATCAATCATGGCAGCATCAA 59.463 36.000 0.00 0.00 0.00 2.57
23 24 5.074115 TCATAATCAATCATGGCAGCATCA 58.926 37.500 0.00 0.00 0.00 3.07
24 25 5.638596 TCATAATCAATCATGGCAGCATC 57.361 39.130 0.00 0.00 0.00 3.91
25 26 6.605471 ATTCATAATCAATCATGGCAGCAT 57.395 33.333 0.00 0.00 0.00 3.79
26 27 6.943718 TCTATTCATAATCAATCATGGCAGCA 59.056 34.615 0.00 0.00 0.00 4.41
27 28 7.387119 TCTATTCATAATCAATCATGGCAGC 57.613 36.000 0.00 0.00 0.00 5.25
68 69 4.646492 ACAGAATCTGTTGGAGCACTTTTT 59.354 37.500 10.56 0.00 42.59 1.94
69 70 4.210331 ACAGAATCTGTTGGAGCACTTTT 58.790 39.130 10.56 0.00 42.59 2.27
70 71 3.825328 ACAGAATCTGTTGGAGCACTTT 58.175 40.909 10.56 0.00 42.59 2.66
71 72 3.498774 ACAGAATCTGTTGGAGCACTT 57.501 42.857 10.56 0.00 42.59 3.16
72 73 4.623932 TTACAGAATCTGTTGGAGCACT 57.376 40.909 21.83 0.00 42.59 4.40
73 74 4.083271 GGTTTACAGAATCTGTTGGAGCAC 60.083 45.833 21.83 8.97 42.59 4.40
74 75 4.072131 GGTTTACAGAATCTGTTGGAGCA 58.928 43.478 21.83 0.00 42.59 4.26
75 76 4.154918 CAGGTTTACAGAATCTGTTGGAGC 59.845 45.833 21.83 15.64 42.59 4.70
76 77 5.551233 TCAGGTTTACAGAATCTGTTGGAG 58.449 41.667 21.83 7.44 42.59 3.86
77 78 5.560722 TCAGGTTTACAGAATCTGTTGGA 57.439 39.130 21.83 5.53 42.59 3.53
78 79 6.824305 AATCAGGTTTACAGAATCTGTTGG 57.176 37.500 21.83 5.44 42.59 3.77
102 103 7.719483 ACAGATTATACGAGATCCCGTAAAAA 58.281 34.615 13.69 11.14 46.29 1.94
103 104 7.281040 ACAGATTATACGAGATCCCGTAAAA 57.719 36.000 13.69 2.57 46.29 1.52
104 105 6.072286 GGACAGATTATACGAGATCCCGTAAA 60.072 42.308 13.69 9.55 46.29 2.01
105 106 5.413833 GGACAGATTATACGAGATCCCGTAA 59.586 44.000 13.69 0.29 46.29 3.18
107 108 3.757493 GGACAGATTATACGAGATCCCGT 59.243 47.826 7.61 7.61 45.54 5.28
108 109 3.756963 TGGACAGATTATACGAGATCCCG 59.243 47.826 0.00 0.00 0.00 5.14
109 110 5.723672 TTGGACAGATTATACGAGATCCC 57.276 43.478 0.00 0.00 0.00 3.85
110 111 8.091449 AGAAATTGGACAGATTATACGAGATCC 58.909 37.037 0.00 0.00 0.00 3.36
111 112 9.134734 GAGAAATTGGACAGATTATACGAGATC 57.865 37.037 0.00 0.00 0.00 2.75
112 113 8.865090 AGAGAAATTGGACAGATTATACGAGAT 58.135 33.333 0.00 0.00 0.00 2.75
113 114 8.239038 AGAGAAATTGGACAGATTATACGAGA 57.761 34.615 0.00 0.00 0.00 4.04
114 115 8.759641 CAAGAGAAATTGGACAGATTATACGAG 58.240 37.037 0.00 0.00 0.00 4.18
115 116 8.258007 ACAAGAGAAATTGGACAGATTATACGA 58.742 33.333 0.00 0.00 34.36 3.43
116 117 8.425577 ACAAGAGAAATTGGACAGATTATACG 57.574 34.615 0.00 0.00 34.36 3.06
126 127 8.561738 TCCTAAATGTACAAGAGAAATTGGAC 57.438 34.615 0.00 0.00 43.22 4.02
127 128 8.602424 TCTCCTAAATGTACAAGAGAAATTGGA 58.398 33.333 0.00 0.00 34.36 3.53
128 129 8.792830 TCTCCTAAATGTACAAGAGAAATTGG 57.207 34.615 0.00 0.00 34.36 3.16
132 133 9.658799 CATCTTCTCCTAAATGTACAAGAGAAA 57.341 33.333 18.23 13.01 39.23 2.52
133 134 9.035890 TCATCTTCTCCTAAATGTACAAGAGAA 57.964 33.333 17.36 17.36 37.87 2.87
134 135 8.470805 GTCATCTTCTCCTAAATGTACAAGAGA 58.529 37.037 0.00 4.38 0.00 3.10
135 136 7.708752 GGTCATCTTCTCCTAAATGTACAAGAG 59.291 40.741 0.00 1.97 0.00 2.85
136 137 7.364762 GGGTCATCTTCTCCTAAATGTACAAGA 60.365 40.741 0.00 0.00 0.00 3.02
137 138 6.763610 GGGTCATCTTCTCCTAAATGTACAAG 59.236 42.308 0.00 0.00 0.00 3.16
138 139 6.443849 AGGGTCATCTTCTCCTAAATGTACAA 59.556 38.462 0.00 0.00 0.00 2.41
139 140 5.964477 AGGGTCATCTTCTCCTAAATGTACA 59.036 40.000 0.00 0.00 0.00 2.90
140 141 6.487299 AGGGTCATCTTCTCCTAAATGTAC 57.513 41.667 0.00 0.00 0.00 2.90
141 142 6.099845 GGAAGGGTCATCTTCTCCTAAATGTA 59.900 42.308 0.00 0.00 41.94 2.29
142 143 5.104318 GGAAGGGTCATCTTCTCCTAAATGT 60.104 44.000 0.00 0.00 41.94 2.71
143 144 5.131809 AGGAAGGGTCATCTTCTCCTAAATG 59.868 44.000 0.00 0.00 41.94 2.32
144 145 5.131809 CAGGAAGGGTCATCTTCTCCTAAAT 59.868 44.000 0.00 0.00 41.94 1.40
145 146 4.471386 CAGGAAGGGTCATCTTCTCCTAAA 59.529 45.833 0.00 0.00 41.94 1.85
146 147 4.033709 CAGGAAGGGTCATCTTCTCCTAA 58.966 47.826 0.00 0.00 41.94 2.69
147 148 3.012959 ACAGGAAGGGTCATCTTCTCCTA 59.987 47.826 0.00 0.00 41.94 2.94
148 149 2.225753 ACAGGAAGGGTCATCTTCTCCT 60.226 50.000 0.00 0.00 41.94 3.69
149 150 2.192263 ACAGGAAGGGTCATCTTCTCC 58.808 52.381 0.00 0.00 41.94 3.71
150 151 3.133183 GGTACAGGAAGGGTCATCTTCTC 59.867 52.174 0.00 0.00 41.94 2.87
151 152 3.108376 GGTACAGGAAGGGTCATCTTCT 58.892 50.000 0.00 0.00 41.94 2.85
152 153 2.838202 TGGTACAGGAAGGGTCATCTTC 59.162 50.000 0.00 0.00 41.64 2.87
153 154 2.572104 GTGGTACAGGAAGGGTCATCTT 59.428 50.000 0.00 0.00 41.80 2.40
154 155 2.188817 GTGGTACAGGAAGGGTCATCT 58.811 52.381 0.00 0.00 41.80 2.90
155 156 1.906574 TGTGGTACAGGAAGGGTCATC 59.093 52.381 0.00 0.00 41.80 2.92
156 157 2.038863 TGTGGTACAGGAAGGGTCAT 57.961 50.000 0.00 0.00 41.80 3.06
157 158 1.906574 GATGTGGTACAGGAAGGGTCA 59.093 52.381 0.00 0.00 41.80 4.02
158 159 1.906574 TGATGTGGTACAGGAAGGGTC 59.093 52.381 0.00 0.00 41.80 4.46
159 160 2.038863 TGATGTGGTACAGGAAGGGT 57.961 50.000 0.00 0.00 41.80 4.34
160 161 2.711542 GTTGATGTGGTACAGGAAGGG 58.288 52.381 0.00 0.00 41.80 3.95
161 162 2.346803 CGTTGATGTGGTACAGGAAGG 58.653 52.381 0.00 0.00 41.80 3.46
162 163 1.732259 GCGTTGATGTGGTACAGGAAG 59.268 52.381 0.00 0.00 41.80 3.46
163 164 1.803334 GCGTTGATGTGGTACAGGAA 58.197 50.000 0.00 0.00 41.80 3.36
164 165 0.389296 CGCGTTGATGTGGTACAGGA 60.389 55.000 0.00 0.00 41.80 3.86
165 166 0.669318 ACGCGTTGATGTGGTACAGG 60.669 55.000 5.58 0.00 41.80 4.00
166 167 0.713883 GACGCGTTGATGTGGTACAG 59.286 55.000 15.53 0.00 41.80 2.74
167 168 1.004785 CGACGCGTTGATGTGGTACA 61.005 55.000 22.24 0.00 0.00 2.90
168 169 1.700029 CGACGCGTTGATGTGGTAC 59.300 57.895 22.24 0.00 0.00 3.34
169 170 2.089936 GCGACGCGTTGATGTGGTA 61.090 57.895 30.28 0.00 0.00 3.25
170 171 3.411351 GCGACGCGTTGATGTGGT 61.411 61.111 30.28 0.00 0.00 4.16
171 172 4.147322 GGCGACGCGTTGATGTGG 62.147 66.667 30.28 6.90 0.00 4.17
172 173 1.417577 TATGGCGACGCGTTGATGTG 61.418 55.000 30.28 9.19 0.00 3.21
173 174 1.153726 TATGGCGACGCGTTGATGT 60.154 52.632 30.28 15.61 0.00 3.06
174 175 1.272715 GTATGGCGACGCGTTGATG 59.727 57.895 30.28 13.51 0.00 3.07
175 176 1.881252 GGTATGGCGACGCGTTGAT 60.881 57.895 30.28 17.24 0.00 2.57
176 177 2.507547 GGTATGGCGACGCGTTGA 60.508 61.111 30.28 10.68 0.00 3.18
177 178 3.560278 GGGTATGGCGACGCGTTG 61.560 66.667 22.38 22.38 0.00 4.10
178 179 4.071875 TGGGTATGGCGACGCGTT 62.072 61.111 15.53 6.05 35.12 4.84
179 180 4.807039 GTGGGTATGGCGACGCGT 62.807 66.667 13.85 13.85 35.12 6.01
180 181 4.508128 AGTGGGTATGGCGACGCG 62.508 66.667 14.61 3.53 35.12 6.01
181 182 2.890474 CAGTGGGTATGGCGACGC 60.890 66.667 12.43 12.43 0.00 5.19
182 183 2.890474 GCAGTGGGTATGGCGACG 60.890 66.667 0.00 0.00 0.00 5.12
183 184 1.153168 ATGCAGTGGGTATGGCGAC 60.153 57.895 0.00 0.00 0.00 5.19
184 185 1.146041 GATGCAGTGGGTATGGCGA 59.854 57.895 0.00 0.00 0.00 5.54
185 186 2.246739 CGATGCAGTGGGTATGGCG 61.247 63.158 0.00 0.00 0.00 5.69
186 187 2.546494 GCGATGCAGTGGGTATGGC 61.546 63.158 0.00 0.00 36.33 4.40
187 188 1.893808 GGCGATGCAGTGGGTATGG 60.894 63.158 0.00 0.00 0.00 2.74
188 189 2.246739 CGGCGATGCAGTGGGTATG 61.247 63.158 0.00 0.00 0.00 2.39
189 190 2.108976 CGGCGATGCAGTGGGTAT 59.891 61.111 0.00 0.00 0.00 2.73
190 191 4.830765 GCGGCGATGCAGTGGGTA 62.831 66.667 12.98 0.00 34.15 3.69
194 195 3.857854 GTCAGCGGCGATGCAGTG 61.858 66.667 21.86 0.00 37.31 3.66
207 208 3.250323 CAGCGCGGATGTCGTCAG 61.250 66.667 8.83 0.00 41.72 3.51
233 234 2.879462 GACGCGGTGTCGATGACC 60.879 66.667 12.47 6.52 37.96 4.02
286 287 5.851047 AAAAGTGATATTTTTGCAGCAGC 57.149 34.783 0.00 0.00 42.57 5.25
290 291 9.565213 CTTCTCCTAAAAGTGATATTTTTGCAG 57.435 33.333 0.00 0.00 34.35 4.41
310 311 9.454859 TTCTCAATTCCTCTAAATTTCTTCTCC 57.545 33.333 0.00 0.00 0.00 3.71
317 318 9.539194 AGGTGATTTCTCAATTCCTCTAAATTT 57.461 29.630 0.00 0.00 31.85 1.82
318 319 9.183368 GAGGTGATTTCTCAATTCCTCTAAATT 57.817 33.333 0.00 0.00 38.91 1.82
320 321 7.607991 GTGAGGTGATTTCTCAATTCCTCTAAA 59.392 37.037 15.04 0.00 42.13 1.85
322 323 6.352222 GGTGAGGTGATTTCTCAATTCCTCTA 60.352 42.308 15.04 5.67 42.13 2.43
323 324 5.495640 GTGAGGTGATTTCTCAATTCCTCT 58.504 41.667 15.04 0.00 42.13 3.69
325 326 4.290722 AGGTGAGGTGATTTCTCAATTCCT 59.709 41.667 0.00 0.00 42.13 3.36
326 327 4.593956 AGGTGAGGTGATTTCTCAATTCC 58.406 43.478 0.00 0.00 42.13 3.01
327 328 7.050377 TCATAGGTGAGGTGATTTCTCAATTC 58.950 38.462 0.00 0.00 42.13 2.17
328 329 6.962182 TCATAGGTGAGGTGATTTCTCAATT 58.038 36.000 0.00 0.00 42.13 2.32
346 347 6.045318 CGAGATGCCCATATAAGTTCATAGG 58.955 44.000 0.00 0.00 0.00 2.57
347 348 6.634805 ACGAGATGCCCATATAAGTTCATAG 58.365 40.000 0.00 0.00 0.00 2.23
349 350 5.489792 ACGAGATGCCCATATAAGTTCAT 57.510 39.130 0.00 0.00 0.00 2.57
350 351 4.955811 ACGAGATGCCCATATAAGTTCA 57.044 40.909 0.00 0.00 0.00 3.18
351 352 7.307811 GGTTTTACGAGATGCCCATATAAGTTC 60.308 40.741 0.00 0.00 0.00 3.01
352 353 6.485648 GGTTTTACGAGATGCCCATATAAGTT 59.514 38.462 0.00 0.00 0.00 2.66
354 355 5.995282 TGGTTTTACGAGATGCCCATATAAG 59.005 40.000 0.00 0.00 0.00 1.73
355 356 5.761234 GTGGTTTTACGAGATGCCCATATAA 59.239 40.000 0.00 0.00 0.00 0.98
357 358 4.134563 GTGGTTTTACGAGATGCCCATAT 58.865 43.478 0.00 0.00 0.00 1.78
379 380 5.592688 TCTCCAACAAAACTCCCAGTAAAAG 59.407 40.000 0.00 0.00 0.00 2.27
460 466 5.481824 TCGGATATATTCTTCTGCATCTGGT 59.518 40.000 0.00 0.00 0.00 4.00
527 537 3.440415 GCCCCGCTGCAAGTTACC 61.440 66.667 0.00 0.00 35.30 2.85
557 567 0.109458 AGTTTGCATGCACGCATCAG 60.109 50.000 22.58 0.00 42.62 2.90
560 570 2.721274 TAAAGTTTGCATGCACGCAT 57.279 40.000 22.58 6.22 42.62 4.73
626 661 1.404717 CGAGCATATTCTGGATCGGGG 60.405 57.143 0.00 0.00 39.08 5.73
627 662 2.001812 CGAGCATATTCTGGATCGGG 57.998 55.000 0.00 0.00 39.08 5.14
697 746 5.178438 GCAATCTAGCATGGAAGTAGCTAAC 59.822 44.000 0.00 0.00 40.05 2.34
722 772 2.728318 CACGCACTAATGATCGATCCTG 59.272 50.000 22.31 11.71 0.00 3.86
723 773 2.864097 GCACGCACTAATGATCGATCCT 60.864 50.000 22.31 10.27 0.00 3.24
781 842 3.785859 ATGGCCATGGCGTCGTCT 61.786 61.111 29.90 7.98 43.06 4.18
859 920 3.133362 AGGGCTTGGATACGAATACGAAA 59.867 43.478 0.00 0.00 42.66 3.46
861 922 2.295349 GAGGGCTTGGATACGAATACGA 59.705 50.000 0.00 0.00 42.66 3.43
863 924 2.367567 TGGAGGGCTTGGATACGAATAC 59.632 50.000 0.00 0.00 42.51 1.89
864 925 2.684943 TGGAGGGCTTGGATACGAATA 58.315 47.619 0.00 0.00 42.51 1.75
865 926 1.507140 TGGAGGGCTTGGATACGAAT 58.493 50.000 0.00 0.00 42.51 3.34
866 927 1.416401 GATGGAGGGCTTGGATACGAA 59.584 52.381 0.00 0.00 42.51 3.85
891 960 3.058639 CAGAGCAAGCGAATTTATAGGCC 60.059 47.826 0.00 0.00 0.00 5.19
892 961 3.608008 GCAGAGCAAGCGAATTTATAGGC 60.608 47.826 0.00 0.00 0.00 3.93
960 1040 1.738099 CAGTGGTCGCAGTGGCTAC 60.738 63.158 0.00 0.00 38.10 3.58
961 1041 1.468506 TTCAGTGGTCGCAGTGGCTA 61.469 55.000 0.00 0.00 38.10 3.93
962 1042 2.721971 CTTCAGTGGTCGCAGTGGCT 62.722 60.000 0.00 0.00 38.10 4.75
963 1043 2.280797 TTCAGTGGTCGCAGTGGC 60.281 61.111 0.00 0.00 0.00 5.01
964 1044 1.669115 CCTTCAGTGGTCGCAGTGG 60.669 63.158 0.00 0.00 0.00 4.00
965 1045 0.668706 CTCCTTCAGTGGTCGCAGTG 60.669 60.000 0.00 0.00 0.00 3.66
966 1046 0.827925 TCTCCTTCAGTGGTCGCAGT 60.828 55.000 0.00 0.00 0.00 4.40
982 1062 1.739338 ATCCGTGATCCGTGCCTCTC 61.739 60.000 0.00 0.00 33.66 3.20
1003 1091 0.612453 TTGCTGGATGCCATGCTTGA 60.612 50.000 0.22 0.00 42.00 3.02
1006 1094 0.752009 CTCTTGCTGGATGCCATGCT 60.752 55.000 0.00 0.00 42.00 3.79
1024 1112 0.394565 AGAGCGAACACAAGAAGCCT 59.605 50.000 0.00 0.00 0.00 4.58
1026 1114 0.793250 GGAGAGCGAACACAAGAAGC 59.207 55.000 0.00 0.00 0.00 3.86
1124 1217 2.214376 ATTCAATTCCTGCCCGTTCA 57.786 45.000 0.00 0.00 0.00 3.18
1129 1222 3.430790 GCCAACTAATTCAATTCCTGCCC 60.431 47.826 0.00 0.00 0.00 5.36
1151 1244 4.201822 GCAAGTTTCTTAGCCTAATGACGG 60.202 45.833 0.00 0.00 0.00 4.79
1213 1317 0.235926 GCCTCTGCACGAACAGAAAC 59.764 55.000 12.04 5.13 45.72 2.78
1251 1355 4.699522 AAGTTCTCCACGCCGGCC 62.700 66.667 23.46 3.47 33.14 6.13
1260 1364 0.875059 CGCCAAAGTGGAAGTTCTCC 59.125 55.000 2.25 0.00 40.96 3.71
2002 2563 0.110056 CATTGTTGCGTGTGCTCCTC 60.110 55.000 0.00 0.00 43.34 3.71
2003 2564 1.951510 CATTGTTGCGTGTGCTCCT 59.048 52.632 0.00 0.00 43.34 3.69
2004 2565 1.730547 GCATTGTTGCGTGTGCTCC 60.731 57.895 0.00 0.00 43.34 4.70
2072 2643 2.001361 GCTCGACGCAGGGTAGCTAA 62.001 60.000 0.00 0.00 38.92 3.09
2073 2644 2.478890 GCTCGACGCAGGGTAGCTA 61.479 63.158 5.35 0.00 38.92 3.32
2074 2645 3.827898 GCTCGACGCAGGGTAGCT 61.828 66.667 5.35 0.00 38.92 3.32
2075 2646 3.759766 GAGCTCGACGCAGGGTAGC 62.760 68.421 0.00 4.54 42.61 3.58
2090 2661 2.100631 AACGGCATGCACGTAGAGC 61.101 57.895 26.82 5.59 44.83 4.09
2116 2687 1.217882 ATTCTTATGCACGTAGGCGC 58.782 50.000 0.00 0.00 42.83 6.53
2170 2753 4.008074 CATATATGCACCTTCCCTTCGT 57.992 45.455 0.00 0.00 0.00 3.85
2220 2809 0.798776 GCATGTGTTCTCCAAGGTCG 59.201 55.000 0.00 0.00 0.00 4.79
2228 2820 1.673168 GAGGGGATGCATGTGTTCTC 58.327 55.000 2.46 0.13 0.00 2.87
2260 2858 5.664294 ACGGGACATAGTACATACAAACA 57.336 39.130 0.00 0.00 0.00 2.83
2271 2872 4.082026 GGCGGTATTAATACGGGACATAGT 60.082 45.833 25.71 0.00 35.07 2.12
2273 2874 3.195396 GGGCGGTATTAATACGGGACATA 59.805 47.826 25.71 0.00 35.07 2.29
2280 2881 6.090358 CAGATAAAGTGGGCGGTATTAATACG 59.910 42.308 17.33 13.82 34.11 3.06
2288 2889 4.500205 CGATAACAGATAAAGTGGGCGGTA 60.500 45.833 0.00 0.00 0.00 4.02
2292 2895 3.560068 CCACGATAACAGATAAAGTGGGC 59.440 47.826 3.98 0.00 39.50 5.36
2332 2938 6.637658 CGAGTAGAAACTAGGCTATTAAGTGC 59.362 42.308 0.00 0.00 35.56 4.40
2344 2952 3.851976 AGTGCACCGAGTAGAAACTAG 57.148 47.619 14.63 0.00 35.56 2.57
2347 2955 5.163884 GGAATTAAGTGCACCGAGTAGAAAC 60.164 44.000 14.63 0.00 0.00 2.78
2348 2956 4.933400 GGAATTAAGTGCACCGAGTAGAAA 59.067 41.667 14.63 0.00 0.00 2.52
2374 2988 2.233676 ACAGCACTGGTCGATGATAACA 59.766 45.455 2.21 0.00 34.19 2.41
2375 2989 2.860735 GACAGCACTGGTCGATGATAAC 59.139 50.000 2.21 0.00 34.19 1.89
2376 2990 2.760650 AGACAGCACTGGTCGATGATAA 59.239 45.455 2.21 0.00 40.20 1.75
2378 2992 1.189752 AGACAGCACTGGTCGATGAT 58.810 50.000 2.21 0.00 40.20 2.45
2379 2993 0.969149 AAGACAGCACTGGTCGATGA 59.031 50.000 2.21 0.00 40.20 2.92
2380 2994 1.728971 GAAAGACAGCACTGGTCGATG 59.271 52.381 2.21 0.00 40.20 3.84
2381 2995 1.344438 TGAAAGACAGCACTGGTCGAT 59.656 47.619 2.21 0.00 40.20 3.59
2382 2996 0.750249 TGAAAGACAGCACTGGTCGA 59.250 50.000 2.21 0.00 40.20 4.20
2383 2997 1.581934 TTGAAAGACAGCACTGGTCG 58.418 50.000 2.21 0.00 40.20 4.79
2384 2998 2.880890 ACATTGAAAGACAGCACTGGTC 59.119 45.455 2.21 0.00 35.50 4.02
2387 3001 3.047796 GCAACATTGAAAGACAGCACTG 58.952 45.455 0.00 0.00 0.00 3.66
2388 3002 2.689471 TGCAACATTGAAAGACAGCACT 59.311 40.909 0.00 0.00 0.00 4.40
2389 3003 3.082698 TGCAACATTGAAAGACAGCAC 57.917 42.857 0.00 0.00 0.00 4.40
2392 3006 6.020121 CAGTTCTTTGCAACATTGAAAGACAG 60.020 38.462 0.00 0.00 35.79 3.51
2396 3013 6.890663 TTCAGTTCTTTGCAACATTGAAAG 57.109 33.333 0.00 0.00 32.05 2.62
2418 3035 7.061054 GCTGTAAAGATTTCTATACCCCCTTT 58.939 38.462 0.00 0.00 0.00 3.11
2424 3041 8.202137 TGTAGTGGCTGTAAAGATTTCTATACC 58.798 37.037 0.00 0.00 0.00 2.73
2427 3044 7.553044 GGTTGTAGTGGCTGTAAAGATTTCTAT 59.447 37.037 0.00 0.00 0.00 1.98
2438 3055 2.831685 CACTGGTTGTAGTGGCTGTA 57.168 50.000 0.00 0.00 43.35 2.74
2448 3065 1.165907 CGTGACATGCCACTGGTTGT 61.166 55.000 10.57 5.71 35.02 3.32
2485 3102 8.543862 AGTTAATAGTTTGAAAGTTCCTACCG 57.456 34.615 0.00 0.00 0.00 4.02
2507 3124 9.632638 TGGTACTTTCCGTTATATAGAGTAGTT 57.367 33.333 0.00 0.00 0.00 2.24
2508 3125 9.804977 ATGGTACTTTCCGTTATATAGAGTAGT 57.195 33.333 0.00 0.00 0.00 2.73
2510 3127 8.939929 CGATGGTACTTTCCGTTATATAGAGTA 58.060 37.037 0.00 0.00 0.00 2.59
2511 3128 7.574592 GCGATGGTACTTTCCGTTATATAGAGT 60.575 40.741 0.00 0.00 0.00 3.24
2512 3129 6.746364 GCGATGGTACTTTCCGTTATATAGAG 59.254 42.308 0.00 0.00 0.00 2.43
2513 3130 6.207221 TGCGATGGTACTTTCCGTTATATAGA 59.793 38.462 0.00 0.00 0.00 1.98
2514 3131 6.384224 TGCGATGGTACTTTCCGTTATATAG 58.616 40.000 0.00 0.00 0.00 1.31
2515 3132 6.330004 TGCGATGGTACTTTCCGTTATATA 57.670 37.500 0.00 0.00 0.00 0.86
2516 3133 5.204409 TGCGATGGTACTTTCCGTTATAT 57.796 39.130 0.00 0.00 0.00 0.86
2523 3140 4.759516 TTTTCTTGCGATGGTACTTTCC 57.240 40.909 0.00 0.00 0.00 3.13
2542 3159 6.292703 CGTCTCTGGTTTATCGTGAACTTTTT 60.293 38.462 0.00 0.00 0.00 1.94
2585 3253 2.833794 TCGTTGAGAACACCAAAGGAG 58.166 47.619 0.00 0.00 0.00 3.69
2596 3264 4.151689 CGGCACTCTTATTTTCGTTGAGAA 59.848 41.667 0.00 0.00 37.01 2.87
2617 3289 2.663852 GTGTCCACCCAACGACGG 60.664 66.667 0.00 0.00 0.00 4.79
2659 3331 4.621747 GCTAGTGGTGACTGTAGAGCAAAT 60.622 45.833 0.00 0.00 32.43 2.32
2677 3361 0.684479 TGCACGATGGAGGAGCTAGT 60.684 55.000 0.00 0.00 0.00 2.57
2678 3362 0.461548 TTGCACGATGGAGGAGCTAG 59.538 55.000 0.00 0.00 0.00 3.42
2679 3363 0.901827 TTTGCACGATGGAGGAGCTA 59.098 50.000 0.00 0.00 0.00 3.32
2680 3364 0.036732 TTTTGCACGATGGAGGAGCT 59.963 50.000 0.00 0.00 0.00 4.09
2707 3391 5.469084 CCAGTAAACCTAATTAATCCCGAGC 59.531 44.000 0.00 0.00 0.00 5.03
2741 3425 1.134530 CGACAGTCGATCGGTTGCTC 61.135 60.000 18.63 11.94 43.74 4.26
2775 3459 1.486211 TTTTTCTTTGCGGGGTTCCA 58.514 45.000 0.00 0.00 0.00 3.53
2792 3476 7.056844 TCGGACTTTTCCAATTACCATTTTT 57.943 32.000 0.00 0.00 43.00 1.94
2793 3477 6.658188 TCGGACTTTTCCAATTACCATTTT 57.342 33.333 0.00 0.00 43.00 1.82
2794 3478 6.404293 CGATCGGACTTTTCCAATTACCATTT 60.404 38.462 7.38 0.00 43.00 2.32
2795 3479 5.065988 CGATCGGACTTTTCCAATTACCATT 59.934 40.000 7.38 0.00 43.00 3.16
2796 3480 4.574828 CGATCGGACTTTTCCAATTACCAT 59.425 41.667 7.38 0.00 43.00 3.55
2797 3481 3.936453 CGATCGGACTTTTCCAATTACCA 59.064 43.478 7.38 0.00 43.00 3.25
2798 3482 3.311596 CCGATCGGACTTTTCCAATTACC 59.688 47.826 30.62 0.00 43.00 2.85
2799 3483 3.311596 CCCGATCGGACTTTTCCAATTAC 59.688 47.826 35.42 0.00 43.00 1.89
2800 3484 3.054948 ACCCGATCGGACTTTTCCAATTA 60.055 43.478 35.42 0.00 43.00 1.40
2801 3485 2.290705 ACCCGATCGGACTTTTCCAATT 60.291 45.455 35.42 1.57 43.00 2.32
2802 3486 1.280998 ACCCGATCGGACTTTTCCAAT 59.719 47.619 35.42 4.38 43.00 3.16
2803 3487 0.688487 ACCCGATCGGACTTTTCCAA 59.312 50.000 35.42 0.00 43.00 3.53
2804 3488 0.036765 CACCCGATCGGACTTTTCCA 60.037 55.000 35.42 0.00 43.00 3.53
2805 3489 0.248289 TCACCCGATCGGACTTTTCC 59.752 55.000 35.42 0.00 38.77 3.13
2806 3490 1.933853 CATCACCCGATCGGACTTTTC 59.066 52.381 35.42 0.00 37.50 2.29
2807 3491 2.012051 GCATCACCCGATCGGACTTTT 61.012 52.381 35.42 12.80 37.50 2.27
2808 3492 0.462047 GCATCACCCGATCGGACTTT 60.462 55.000 35.42 14.26 37.50 2.66
2814 3498 0.104120 TTGTAGGCATCACCCGATCG 59.896 55.000 8.51 8.51 40.58 3.69
2872 3557 0.039618 GGAAGATTTCCCTGCCACCA 59.960 55.000 0.00 0.00 44.30 4.17
2890 3575 9.850628 CATTTCCACTGCTATATAATCAAATGG 57.149 33.333 0.00 0.00 0.00 3.16
2899 3584 8.257602 TGTCCTTACATTTCCACTGCTATATA 57.742 34.615 0.00 0.00 0.00 0.86
2922 3607 6.701841 CCTACGTGCTTGAGTTGAATATATGT 59.298 38.462 0.00 0.00 0.00 2.29
2929 3614 1.270625 CCCCTACGTGCTTGAGTTGAA 60.271 52.381 0.00 0.00 0.00 2.69
2940 3625 0.250553 TTGCTTCCAACCCCTACGTG 60.251 55.000 0.00 0.00 0.00 4.49
2958 3643 6.319399 ACTCAGTTTCGTTCATTTTCGTTTT 58.681 32.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.