Multiple sequence alignment - TraesCS2D01G464900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G464900 chr2D 100.000 4831 0 0 1 4831 571055250 571060080 0.000000e+00 8922
1 TraesCS2D01G464900 chr2A 90.182 4288 246 83 568 4790 709772379 709776556 0.000000e+00 5424
2 TraesCS2D01G464900 chr2A 92.570 323 10 8 153 468 709771994 709772309 7.370000e-123 451
3 TraesCS2D01G464900 chr2A 85.075 134 14 5 2 129 709771863 709771996 1.090000e-26 132
4 TraesCS2D01G464900 chr2B 88.351 4052 318 99 71 4029 683001146 683005136 0.000000e+00 4726
5 TraesCS2D01G464900 chr2B 89.674 552 31 7 4063 4605 683005210 683005744 0.000000e+00 680
6 TraesCS2D01G464900 chr2B 97.101 69 2 0 4763 4831 683006131 683006199 3.050000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G464900 chr2D 571055250 571060080 4830 False 8922.000000 8922 100.000000 1 4831 1 chr2D.!!$F1 4830
1 TraesCS2D01G464900 chr2A 709771863 709776556 4693 False 2002.333333 5424 89.275667 2 4790 3 chr2A.!!$F1 4788
2 TraesCS2D01G464900 chr2B 683001146 683006199 5053 False 1841.000000 4726 91.708667 71 4831 3 chr2B.!!$F1 4760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 80 0.168128 ATAAAACGGAGCTTGTGCGC 59.832 50.0 0.00 0.00 45.48 6.09 F
195 215 0.609406 TCCTGTCCAGTCCAGTCGAG 60.609 60.0 0.00 0.00 0.00 4.04 F
681 741 0.888619 TGCGTCGATGAGACCTTTCT 59.111 50.0 9.31 0.00 46.92 2.52 F
2332 2463 0.250513 GCTTCGAGTTCCATGGAGGT 59.749 55.0 15.53 6.05 39.02 3.85 F
2993 3124 0.034767 TCCTGTAGGTGGACGATCGT 60.035 55.0 22.97 22.97 36.34 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1277 0.321671 TTGGAAACGAGGAGCAGAGG 59.678 55.0 0.00 0.00 0.00 3.69 R
2193 2324 0.868406 GTGAACTGAACTCTTGGGCG 59.132 55.0 0.00 0.00 0.00 6.13 R
2536 2667 0.532115 GAATGGGGCGAGCAAATGTT 59.468 50.0 0.00 0.00 0.00 2.71 R
3523 3654 0.536260 TGCAAACAAAAGCAGCTGGT 59.464 45.0 13.85 13.85 35.51 4.00 R
4696 5224 0.233848 GGTACTTTGCCACGTCAACG 59.766 55.0 0.12 0.12 46.33 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.971695 CTGGACGGTGAAAAGGGCC 60.972 63.158 0.00 0.00 0.00 5.80
53 68 3.305881 GGGAGATCGGGGTAGATAAAACG 60.306 52.174 0.00 0.00 0.00 3.60
62 77 3.621715 GGGTAGATAAAACGGAGCTTGTG 59.378 47.826 0.00 0.00 0.00 3.33
63 78 3.063588 GGTAGATAAAACGGAGCTTGTGC 59.936 47.826 0.00 0.00 40.05 4.57
65 80 0.168128 ATAAAACGGAGCTTGTGCGC 59.832 50.000 0.00 0.00 45.48 6.09
66 81 2.165362 TAAAACGGAGCTTGTGCGCG 62.165 55.000 0.00 0.00 45.48 6.86
139 154 4.994756 GGGGTGGGGTTGTGCCTG 62.995 72.222 0.00 0.00 37.43 4.85
191 211 1.908793 CCGTCCTGTCCAGTCCAGT 60.909 63.158 0.00 0.00 0.00 4.00
192 212 1.587054 CGTCCTGTCCAGTCCAGTC 59.413 63.158 0.00 0.00 0.00 3.51
193 213 1.587054 GTCCTGTCCAGTCCAGTCG 59.413 63.158 0.00 0.00 0.00 4.18
194 214 0.894184 GTCCTGTCCAGTCCAGTCGA 60.894 60.000 0.00 0.00 0.00 4.20
195 215 0.609406 TCCTGTCCAGTCCAGTCGAG 60.609 60.000 0.00 0.00 0.00 4.04
257 277 1.063616 CCATCGTTGCTGCTGAGATTG 59.936 52.381 0.00 0.00 0.00 2.67
370 396 4.259690 GCTCGCCAGTTGTTAATACTAACG 60.260 45.833 0.00 7.57 40.38 3.18
379 405 3.609373 TGTTAATACTAACGCGTGTCAGC 59.391 43.478 14.98 0.00 40.38 4.26
412 438 5.021458 TCAGACGGTAATTTTCCTACTCCT 58.979 41.667 0.00 0.00 0.00 3.69
413 439 6.189859 TCAGACGGTAATTTTCCTACTCCTA 58.810 40.000 0.00 0.00 0.00 2.94
414 440 6.096001 TCAGACGGTAATTTTCCTACTCCTAC 59.904 42.308 0.00 0.00 0.00 3.18
481 511 8.723365 TGTGTAATGGAGAGGGATTATGTTAAT 58.277 33.333 0.00 0.00 0.00 1.40
483 513 9.170890 TGTAATGGAGAGGGATTATGTTAATCT 57.829 33.333 7.09 0.00 0.00 2.40
485 515 7.639062 ATGGAGAGGGATTATGTTAATCTGT 57.361 36.000 7.09 0.00 0.00 3.41
487 517 6.183361 TGGAGAGGGATTATGTTAATCTGTGG 60.183 42.308 7.09 0.00 0.00 4.17
495 525 6.757897 TTATGTTAATCTGTGGAAAGCTGG 57.242 37.500 0.00 0.00 0.00 4.85
503 533 3.741476 GGAAAGCTGGGCGTGCAG 61.741 66.667 0.00 0.00 0.00 4.41
549 597 5.304686 AGTCATCAAAGGTTGTTGGTAGA 57.695 39.130 0.55 0.00 32.56 2.59
551 599 5.063880 GTCATCAAAGGTTGTTGGTAGAGT 58.936 41.667 0.55 0.00 32.56 3.24
552 600 6.042781 AGTCATCAAAGGTTGTTGGTAGAGTA 59.957 38.462 0.55 0.00 32.56 2.59
554 602 6.708949 TCATCAAAGGTTGTTGGTAGAGTAAC 59.291 38.462 0.55 0.00 32.56 2.50
555 603 5.991861 TCAAAGGTTGTTGGTAGAGTAACA 58.008 37.500 0.00 0.00 35.20 2.41
556 604 6.416415 TCAAAGGTTGTTGGTAGAGTAACAA 58.584 36.000 0.00 0.00 42.57 2.83
557 605 6.540914 TCAAAGGTTGTTGGTAGAGTAACAAG 59.459 38.462 0.00 0.00 44.60 3.16
558 606 4.969484 AGGTTGTTGGTAGAGTAACAAGG 58.031 43.478 0.00 0.00 44.60 3.61
561 609 5.454329 GGTTGTTGGTAGAGTAACAAGGAGT 60.454 44.000 0.00 0.00 44.60 3.85
562 610 6.239402 GGTTGTTGGTAGAGTAACAAGGAGTA 60.239 42.308 0.00 0.00 44.60 2.59
563 611 6.336842 TGTTGGTAGAGTAACAAGGAGTAC 57.663 41.667 0.00 0.00 35.77 2.73
564 612 6.073314 TGTTGGTAGAGTAACAAGGAGTACT 58.927 40.000 0.00 0.00 35.77 2.73
565 613 7.233632 TGTTGGTAGAGTAACAAGGAGTACTA 58.766 38.462 0.00 0.00 35.77 1.82
566 614 7.892241 TGTTGGTAGAGTAACAAGGAGTACTAT 59.108 37.037 0.00 0.00 35.77 2.12
567 615 8.747471 GTTGGTAGAGTAACAAGGAGTACTATT 58.253 37.037 0.00 0.00 35.77 1.73
620 668 2.235536 GAATGGGTTTCGACGGTGCG 62.236 60.000 0.00 0.00 0.00 5.34
635 688 2.280708 CGGTGCGTGTAGTAATTGTAGC 59.719 50.000 0.00 0.00 0.00 3.58
681 741 0.888619 TGCGTCGATGAGACCTTTCT 59.111 50.000 9.31 0.00 46.92 2.52
686 746 2.092838 GTCGATGAGACCTTTCTTTGCG 59.907 50.000 0.00 0.00 43.95 4.85
693 753 1.266989 GACCTTTCTTTGCGGTGGAAG 59.733 52.381 0.00 0.00 0.00 3.46
705 765 1.672881 CGGTGGAAGCATGGAGATTTC 59.327 52.381 0.00 0.00 0.00 2.17
709 769 1.601430 GGAAGCATGGAGATTTCGAGC 59.399 52.381 0.00 0.00 0.00 5.03
719 779 1.993370 AGATTTCGAGCGTTCGGAAAG 59.007 47.619 19.49 0.00 46.70 2.62
720 780 1.060698 GATTTCGAGCGTTCGGAAAGG 59.939 52.381 19.49 0.00 46.70 3.11
721 781 0.947180 TTTCGAGCGTTCGGAAAGGG 60.947 55.000 21.60 0.00 46.67 3.95
722 782 1.808531 TTCGAGCGTTCGGAAAGGGA 61.809 55.000 21.60 0.00 46.67 4.20
723 783 1.805945 CGAGCGTTCGGAAAGGGAG 60.806 63.158 14.37 0.00 43.05 4.30
797 879 1.247567 AAAAGGGCAAGACATCACGG 58.752 50.000 0.00 0.00 0.00 4.94
798 880 1.244019 AAAGGGCAAGACATCACGGC 61.244 55.000 0.00 0.00 0.00 5.68
799 881 3.499737 GGGCAAGACATCACGGCG 61.500 66.667 4.80 4.80 0.00 6.46
800 882 2.742372 GGCAAGACATCACGGCGT 60.742 61.111 6.77 6.77 0.00 5.68
801 883 2.476051 GCAAGACATCACGGCGTG 59.524 61.111 32.75 32.75 34.45 5.34
802 884 2.476051 CAAGACATCACGGCGTGC 59.524 61.111 33.59 20.01 32.98 5.34
803 885 2.742372 AAGACATCACGGCGTGCC 60.742 61.111 33.59 21.01 32.98 5.01
804 886 3.240134 AAGACATCACGGCGTGCCT 62.240 57.895 33.59 22.70 32.98 4.75
805 887 3.490759 GACATCACGGCGTGCCTG 61.491 66.667 33.59 30.65 32.98 4.85
806 888 4.314440 ACATCACGGCGTGCCTGT 62.314 61.111 33.59 31.24 32.98 4.00
807 889 3.049674 CATCACGGCGTGCCTGTT 61.050 61.111 33.59 13.38 32.98 3.16
829 911 2.621055 AGATCTCTGCTTACAGTAGCCG 59.379 50.000 0.00 0.00 44.77 5.52
872 961 2.558795 TGTGTTCTCTTCTCTTCTCCCG 59.441 50.000 0.00 0.00 0.00 5.14
882 971 3.934391 CTTCTCCCGTCACGCCCAC 62.934 68.421 0.00 0.00 0.00 4.61
913 1002 2.780693 CCCTCACTCTCCCTCCCA 59.219 66.667 0.00 0.00 0.00 4.37
1035 1124 1.122632 TTCACAAGCCCCAGGTACGA 61.123 55.000 0.00 0.00 0.00 3.43
1170 1267 8.713765 CGGAAATATTTCGTTTTCTGGATATG 57.286 34.615 19.41 0.00 38.06 1.78
1180 1277 3.777106 TTCTGGATATGGATGTGCTCC 57.223 47.619 0.00 0.00 45.19 4.70
1272 1369 2.290577 ACAAGATCAAAGCCAGTCTCCC 60.291 50.000 0.00 0.00 0.00 4.30
1273 1370 1.963985 AGATCAAAGCCAGTCTCCCT 58.036 50.000 0.00 0.00 0.00 4.20
1303 1406 9.449719 TTTTTGTTCTAGAGGATTAAAGCTAGG 57.550 33.333 0.00 0.00 33.03 3.02
1424 1530 3.554324 TGTTCAGTTATCGCTTATTCGGC 59.446 43.478 0.00 0.00 0.00 5.54
1425 1531 2.750948 TCAGTTATCGCTTATTCGGCC 58.249 47.619 0.00 0.00 0.00 6.13
1442 1548 2.605338 CGGCCAATCTGTTTTGTCAGTG 60.605 50.000 2.24 0.00 36.85 3.66
1447 1553 5.450412 GCCAATCTGTTTTGTCAGTGAAAGA 60.450 40.000 0.00 0.00 36.85 2.52
1516 1623 2.112718 CTGCCCCTCTGCATAGGC 59.887 66.667 12.62 10.59 45.96 3.93
1616 1731 2.203877 ACTAGCCCGGTGTCCCAA 60.204 61.111 0.00 0.00 0.00 4.12
1647 1762 7.396540 AATAGAAGTGTCAAATGGTCATTCC 57.603 36.000 0.00 0.00 0.00 3.01
1669 1784 2.224606 CTGGCTGTCACTGTCACAAAT 58.775 47.619 0.00 0.00 0.00 2.32
1678 1795 7.384439 TGTCACTGTCACAAATGTCTAAAAA 57.616 32.000 0.00 0.00 0.00 1.94
1679 1796 7.995289 TGTCACTGTCACAAATGTCTAAAAAT 58.005 30.769 0.00 0.00 0.00 1.82
1687 1804 8.550376 GTCACAAATGTCTAAAAATTTGCATGT 58.450 29.630 7.78 0.00 44.15 3.21
1705 1822 8.479313 TTGCATGTCACTAGTACTTCTAATTG 57.521 34.615 0.00 0.00 0.00 2.32
1716 1834 4.510038 ACTTCTAATTGCTTGGCACTTG 57.490 40.909 5.58 0.00 38.71 3.16
1761 1879 5.906073 CCAAGTAGAAATATTTTGGGCAGG 58.094 41.667 1.43 0.00 35.71 4.85
1764 1882 7.505585 CCAAGTAGAAATATTTTGGGCAGGATA 59.494 37.037 1.43 0.00 35.71 2.59
1765 1883 9.082313 CAAGTAGAAATATTTTGGGCAGGATAT 57.918 33.333 1.43 0.00 0.00 1.63
1779 1897 4.440802 GGCAGGATATAATAGCAGAGGTCG 60.441 50.000 0.00 0.00 0.00 4.79
1781 1899 4.400884 CAGGATATAATAGCAGAGGTCGCT 59.599 45.833 0.00 0.00 43.62 4.93
1783 1901 5.591067 AGGATATAATAGCAGAGGTCGCTAC 59.409 44.000 0.00 0.00 44.36 3.58
1798 1916 6.707599 GGTCGCTACCATGAATTATAAGAC 57.292 41.667 1.78 0.00 45.98 3.01
1801 1919 8.033038 GGTCGCTACCATGAATTATAAGACATA 58.967 37.037 1.78 0.00 45.98 2.29
1802 1920 9.587772 GTCGCTACCATGAATTATAAGACATAT 57.412 33.333 0.00 3.13 0.00 1.78
1803 1921 9.586435 TCGCTACCATGAATTATAAGACATATG 57.414 33.333 0.00 0.00 0.00 1.78
1804 1922 9.586435 CGCTACCATGAATTATAAGACATATGA 57.414 33.333 10.38 0.00 0.00 2.15
1909 2028 2.352805 CTCCTGGGAGCCCACAAC 59.647 66.667 3.58 0.00 41.89 3.32
2043 2164 6.645415 ACATATAACGCTAGCCTATTTGTGTC 59.355 38.462 18.58 0.00 0.00 3.67
2054 2175 7.907214 AGCCTATTTGTGTCTAACTTACTTG 57.093 36.000 0.00 0.00 0.00 3.16
2060 2181 4.964593 TGTGTCTAACTTACTTGTTCCCC 58.035 43.478 0.00 0.00 0.00 4.81
2073 2194 4.018779 ACTTGTTCCCCGATCAAGGAAATA 60.019 41.667 13.58 5.33 43.62 1.40
2080 2211 5.104109 TCCCCGATCAAGGAAATAACATCTT 60.104 40.000 0.20 0.00 0.00 2.40
2114 2245 3.699894 CAGACAGCTCCGGTGCCT 61.700 66.667 24.18 12.01 34.04 4.75
2150 2281 2.479837 CAGTCAGCAACACCGAAGTTA 58.520 47.619 0.00 0.00 0.00 2.24
2176 2307 3.900601 ACAAGGATCCAGCAGTAGATAGG 59.099 47.826 15.82 0.00 0.00 2.57
2193 2324 6.038997 AGATAGGTACAAGGTTCAGAACAC 57.961 41.667 15.36 4.09 0.00 3.32
2317 2448 0.393537 ATGCCAGTACCAGCAGCTTC 60.394 55.000 12.41 0.00 43.38 3.86
2332 2463 0.250513 GCTTCGAGTTCCATGGAGGT 59.749 55.000 15.53 6.05 39.02 3.85
2348 2479 4.415332 GTGAGAAGACGGCGGCGA 62.415 66.667 38.93 10.96 0.00 5.54
2362 2493 4.084888 GCGAAGAACCCAACGGCG 62.085 66.667 4.80 4.80 0.00 6.46
2374 2505 2.998279 AACGGCGGGGTACTTCTCG 61.998 63.158 13.24 0.00 0.00 4.04
2536 2667 2.517402 GTGCCCAAACACCACGGA 60.517 61.111 0.00 0.00 34.35 4.69
2537 2668 2.122167 GTGCCCAAACACCACGGAA 61.122 57.895 0.00 0.00 34.35 4.30
2587 2718 1.207089 AGATTCAATCCGGCTTCGTCA 59.793 47.619 0.00 0.00 0.00 4.35
2639 2770 2.705826 CTTCGCATCAGCCGAAGC 59.294 61.111 10.08 0.00 41.08 3.86
2685 2816 1.765314 AGATCAAGGTTCTAGCGCCAT 59.235 47.619 2.29 0.00 0.00 4.40
2689 2820 0.103208 AAGGTTCTAGCGCCATCTCG 59.897 55.000 2.29 0.00 0.00 4.04
2717 2848 0.875059 GAAGGGTCAAGCTGAAACCG 59.125 55.000 6.39 0.00 32.74 4.44
2905 3036 4.122776 CTCCAATACCAAGTCAAGATCCG 58.877 47.826 0.00 0.00 0.00 4.18
2993 3124 0.034767 TCCTGTAGGTGGACGATCGT 60.035 55.000 22.97 22.97 36.34 3.73
3223 3354 2.139118 GAGCGGATGAAGCAGGAATAC 58.861 52.381 0.00 0.00 37.01 1.89
3250 3381 4.137879 GCTGCAGCATTCGAGGAT 57.862 55.556 33.36 0.00 41.59 3.24
3271 3402 5.569059 GGATGCTGAAAATTCTAAACACACG 59.431 40.000 0.00 0.00 0.00 4.49
3316 3447 2.764572 ACTATCTGGTACCCTTCGTTGG 59.235 50.000 10.07 0.00 0.00 3.77
3322 3453 1.605232 GGTACCCTTCGTTGGTTGTTG 59.395 52.381 0.00 0.00 37.31 3.33
3328 3459 4.202388 ACCCTTCGTTGGTTGTTGTACTAT 60.202 41.667 0.00 0.00 29.75 2.12
3515 3646 6.763355 ACTAGAGGTGCATTTCCACTATATG 58.237 40.000 0.00 0.00 36.03 1.78
3516 3647 5.894298 AGAGGTGCATTTCCACTATATGA 57.106 39.130 0.00 0.00 36.03 2.15
3517 3648 6.252599 AGAGGTGCATTTCCACTATATGAA 57.747 37.500 0.00 0.00 36.03 2.57
3518 3649 6.058183 AGAGGTGCATTTCCACTATATGAAC 58.942 40.000 0.00 0.00 36.03 3.18
3519 3650 5.754782 AGGTGCATTTCCACTATATGAACA 58.245 37.500 0.00 0.00 36.03 3.18
3520 3651 6.186957 AGGTGCATTTCCACTATATGAACAA 58.813 36.000 0.00 0.00 36.03 2.83
3522 3653 7.178274 AGGTGCATTTCCACTATATGAACAAAA 59.822 33.333 0.00 0.00 36.03 2.44
3523 3654 7.816995 GGTGCATTTCCACTATATGAACAAAAA 59.183 33.333 0.00 0.00 36.03 1.94
3560 3700 4.300189 TGCACCAACACATACTTTGAAC 57.700 40.909 0.00 0.00 0.00 3.18
3561 3701 3.696548 TGCACCAACACATACTTTGAACA 59.303 39.130 0.00 0.00 0.00 3.18
3563 3703 4.439426 GCACCAACACATACTTTGAACACA 60.439 41.667 0.00 0.00 0.00 3.72
3564 3704 5.735922 GCACCAACACATACTTTGAACACAT 60.736 40.000 0.00 0.00 0.00 3.21
3583 3731 9.413048 GAACACATATCATACTCTTAAGTAGCC 57.587 37.037 1.63 0.00 41.22 3.93
3587 3735 8.580720 ACATATCATACTCTTAAGTAGCCTGTG 58.419 37.037 1.63 0.00 41.22 3.66
3605 3753 4.576463 CCTGTGGCCTAGTAATGACAAATC 59.424 45.833 3.32 0.00 0.00 2.17
3794 3942 2.499685 GGACGGATTCCAGGGTCG 59.500 66.667 3.09 0.00 45.10 4.79
3843 3996 5.883673 TGTGAACCTTAGCACTTGTTTAACT 59.116 36.000 0.00 0.00 36.05 2.24
3865 4018 8.959705 AACTACTAGCCTGTTAAAATATGGTC 57.040 34.615 0.00 0.00 0.00 4.02
3866 4019 7.208080 ACTACTAGCCTGTTAAAATATGGTCG 58.792 38.462 0.00 0.00 0.00 4.79
3867 4020 5.985911 ACTAGCCTGTTAAAATATGGTCGT 58.014 37.500 0.00 0.00 0.00 4.34
3869 4022 4.839121 AGCCTGTTAAAATATGGTCGTGA 58.161 39.130 0.00 0.00 0.00 4.35
3904 4060 3.511477 TCCTCCTATAGTCAGCATTCCC 58.489 50.000 0.00 0.00 0.00 3.97
4005 4163 1.800805 CTTAGTGTGAGGTGTGCCAG 58.199 55.000 0.00 0.00 37.19 4.85
4017 4175 2.093711 GGTGTGCCAGGTTCTTGTTTTT 60.094 45.455 0.00 0.00 34.09 1.94
4049 4213 7.631717 AAAAGGTTCCTATAAGCTGTTCATC 57.368 36.000 0.00 0.00 0.00 2.92
4050 4214 5.957771 AGGTTCCTATAAGCTGTTCATCA 57.042 39.130 0.00 0.00 0.00 3.07
4053 4217 5.525378 GGTTCCTATAAGCTGTTCATCAGTG 59.475 44.000 0.00 0.00 45.23 3.66
4057 4221 0.403271 AAGCTGTTCATCAGTGGGCT 59.597 50.000 0.00 0.00 45.23 5.19
4058 4222 1.279496 AGCTGTTCATCAGTGGGCTA 58.721 50.000 0.00 0.00 45.23 3.93
4059 4223 1.209019 AGCTGTTCATCAGTGGGCTAG 59.791 52.381 0.00 0.00 45.23 3.42
4060 4224 1.065854 GCTGTTCATCAGTGGGCTAGT 60.066 52.381 0.00 0.00 45.23 2.57
4064 4273 5.453339 GCTGTTCATCAGTGGGCTAGTAATA 60.453 44.000 0.00 0.00 45.23 0.98
4092 4301 7.537596 ACAAAAACCATTTCCATGACTGATA 57.462 32.000 0.00 0.00 31.07 2.15
4096 4305 7.578310 AAACCATTTCCATGACTGATAGATG 57.422 36.000 0.00 0.00 31.07 2.90
4101 4310 4.597404 TCCATGACTGATAGATGCACTC 57.403 45.455 0.00 0.00 0.00 3.51
4118 4327 3.303395 GCACTCGACCTTTCTTTCTTGTG 60.303 47.826 0.00 0.00 0.00 3.33
4161 4370 5.394553 GGTCAAATTCATGTTTCTGGGATCC 60.395 44.000 1.92 1.92 0.00 3.36
4310 4522 3.813529 GCACTGAACAGTAAAGCGAAT 57.186 42.857 7.15 0.00 40.20 3.34
4348 4566 5.927689 GGTGAAATCAGAGAGATAGCTCATG 59.072 44.000 11.20 8.70 43.81 3.07
4370 4588 0.918983 TGTGGAATAGAAGGGGCCAG 59.081 55.000 4.39 0.00 0.00 4.85
4371 4589 1.213296 GTGGAATAGAAGGGGCCAGA 58.787 55.000 4.39 0.00 0.00 3.86
4372 4590 1.564348 GTGGAATAGAAGGGGCCAGAA 59.436 52.381 4.39 0.00 0.00 3.02
4393 4621 0.603707 CGGGCATCGGCTGATACAAT 60.604 55.000 7.96 0.00 40.87 2.71
4447 4676 1.066143 ACCTGCAAACTATGGACTCGG 60.066 52.381 0.00 0.00 0.00 4.63
4492 4721 4.020751 AGAGTGTAGACAGTAGACGTACCA 60.021 45.833 0.00 0.00 0.00 3.25
4523 4752 2.341101 CCCGGTAGTCAGTGCTCGT 61.341 63.158 0.00 0.00 0.00 4.18
4552 4781 7.755582 TCTACAGTTGACATTTCATATCGTG 57.244 36.000 0.00 0.00 0.00 4.35
4555 4784 5.412594 ACAGTTGACATTTCATATCGTGCTT 59.587 36.000 0.00 0.00 0.00 3.91
4629 5157 4.632538 AGGCAATTTGATACCGCTTTAC 57.367 40.909 0.00 0.00 0.00 2.01
4632 5160 5.047660 AGGCAATTTGATACCGCTTTACAAA 60.048 36.000 0.00 0.00 35.49 2.83
4640 5168 9.915629 TTTGATACCGCTTTACAAATTTAACAT 57.084 25.926 0.00 0.00 0.00 2.71
4682 5210 2.112297 GTGGTCAAAGCCCGGTCA 59.888 61.111 0.00 0.00 0.00 4.02
4696 5224 4.324991 GTCACCACCCCGGACCAC 62.325 72.222 0.73 0.00 38.63 4.16
4756 5286 4.074970 CGGTAGGATGTATACCTTACCGT 58.925 47.826 23.11 6.27 42.44 4.83
4776 5307 3.503748 CGTCAAAGCCATTCTTTCTCCTT 59.496 43.478 0.00 0.00 42.82 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.524621 CGTCCAGGCCCATGTCATC 60.525 63.158 0.00 0.00 0.00 2.92
30 31 2.211250 TTATCTACCCCGATCTCCCG 57.789 55.000 0.00 0.00 0.00 5.14
32 33 3.305881 CCGTTTTATCTACCCCGATCTCC 60.306 52.174 0.00 0.00 0.00 3.71
45 46 1.790481 GCGCACAAGCTCCGTTTTATC 60.790 52.381 0.30 0.00 39.10 1.75
62 77 3.474034 GTCAGTGACTCTGCGCGC 61.474 66.667 27.26 27.26 43.32 6.86
63 78 2.050077 TGTCAGTGACTCTGCGCG 60.050 61.111 23.29 0.00 43.32 6.86
64 79 2.368105 CGTGTCAGTGACTCTGCGC 61.368 63.158 23.29 0.00 43.32 6.09
65 80 0.727457 CTCGTGTCAGTGACTCTGCG 60.727 60.000 23.29 19.78 43.32 5.18
66 81 0.387878 CCTCGTGTCAGTGACTCTGC 60.388 60.000 23.29 10.37 43.32 4.26
67 82 0.242286 CCCTCGTGTCAGTGACTCTG 59.758 60.000 23.29 15.28 44.85 3.35
68 83 0.110678 TCCCTCGTGTCAGTGACTCT 59.889 55.000 23.29 0.00 33.15 3.24
69 84 1.135257 CATCCCTCGTGTCAGTGACTC 60.135 57.143 23.29 18.55 33.15 3.36
107 122 0.833287 ACCCCACCTCTGATGAATCG 59.167 55.000 0.00 0.00 0.00 3.34
144 159 1.524621 CCATCCATCCACCGAGCAC 60.525 63.158 0.00 0.00 0.00 4.40
179 194 2.276116 GCCTCGACTGGACTGGACA 61.276 63.158 0.00 0.00 0.00 4.02
257 277 6.323996 CCCCAAACTTTTATTATTCCTCCTCC 59.676 42.308 0.00 0.00 0.00 4.30
370 396 2.047769 GATTATCTCTCGCTGACACGC 58.952 52.381 0.00 0.00 0.00 5.34
379 405 7.115095 GGAAAATTACCGTCTGATTATCTCTCG 59.885 40.741 0.00 0.00 0.00 4.04
412 438 2.853235 TCTCTCACTGACACGGAGTA 57.147 50.000 0.00 0.00 41.61 2.59
414 440 1.468908 GCATCTCTCACTGACACGGAG 60.469 57.143 0.00 0.00 0.00 4.63
481 511 2.032528 CGCCCAGCTTTCCACAGA 59.967 61.111 0.00 0.00 0.00 3.41
483 513 2.594303 CACGCCCAGCTTTCCACA 60.594 61.111 0.00 0.00 0.00 4.17
485 515 4.577677 TGCACGCCCAGCTTTCCA 62.578 61.111 0.00 0.00 0.00 3.53
487 517 2.192608 CTTCTGCACGCCCAGCTTTC 62.193 60.000 0.00 0.00 32.87 2.62
495 525 1.817099 CCATCCTCTTCTGCACGCC 60.817 63.158 0.00 0.00 0.00 5.68
525 555 6.228258 TCTACCAACAACCTTTGATGACTAC 58.772 40.000 0.00 0.00 35.70 2.73
530 560 6.485313 TGTTACTCTACCAACAACCTTTGATG 59.515 38.462 0.00 0.00 31.93 3.07
531 561 6.597562 TGTTACTCTACCAACAACCTTTGAT 58.402 36.000 0.00 0.00 31.93 2.57
552 600 8.033626 GCTGTACTTGTAATAGTACTCCTTGTT 58.966 37.037 0.00 0.00 46.81 2.83
554 602 7.544622 TGCTGTACTTGTAATAGTACTCCTTG 58.455 38.462 0.00 0.00 46.81 3.61
555 603 7.713734 TGCTGTACTTGTAATAGTACTCCTT 57.286 36.000 0.00 0.00 46.81 3.36
556 604 7.713734 TTGCTGTACTTGTAATAGTACTCCT 57.286 36.000 0.00 0.00 46.81 3.69
557 605 7.008992 CGTTTGCTGTACTTGTAATAGTACTCC 59.991 40.741 0.00 6.51 46.81 3.85
558 606 7.008992 CCGTTTGCTGTACTTGTAATAGTACTC 59.991 40.741 0.00 7.33 46.81 2.59
561 609 5.577945 GCCGTTTGCTGTACTTGTAATAGTA 59.422 40.000 0.00 0.00 36.87 1.82
562 610 4.390909 GCCGTTTGCTGTACTTGTAATAGT 59.609 41.667 0.00 0.00 36.87 2.12
563 611 4.893795 GCCGTTTGCTGTACTTGTAATAG 58.106 43.478 0.00 0.00 36.87 1.73
564 612 4.932268 GCCGTTTGCTGTACTTGTAATA 57.068 40.909 0.00 0.00 36.87 0.98
565 613 3.824414 GCCGTTTGCTGTACTTGTAAT 57.176 42.857 0.00 0.00 36.87 1.89
596 644 1.794222 GTCGAAACCCATTCTGGCG 59.206 57.895 0.00 0.00 35.79 5.69
612 660 2.331194 ACAATTACTACACGCACCGTC 58.669 47.619 0.00 0.00 38.32 4.79
620 668 3.932710 TGCTGCTGCTACAATTACTACAC 59.067 43.478 17.00 0.00 40.48 2.90
681 741 1.228398 TCCATGCTTCCACCGCAAA 60.228 52.632 0.00 0.00 41.26 3.68
686 746 1.672881 CGAAATCTCCATGCTTCCACC 59.327 52.381 0.00 0.00 0.00 4.61
693 753 1.004504 GAACGCTCGAAATCTCCATGC 60.005 52.381 0.00 0.00 0.00 4.06
705 765 1.805945 CTCCCTTTCCGAACGCTCG 60.806 63.158 0.15 0.15 45.02 5.03
709 769 1.574702 GGCAACTCCCTTTCCGAACG 61.575 60.000 0.00 0.00 0.00 3.95
720 780 4.329545 TCTGGCCGTGGCAACTCC 62.330 66.667 13.76 0.00 44.11 3.85
721 781 2.731691 TTCTCTGGCCGTGGCAACTC 62.732 60.000 13.76 0.00 44.11 3.01
722 782 2.337879 TTTCTCTGGCCGTGGCAACT 62.338 55.000 13.76 0.00 44.11 3.16
723 783 1.896660 TTTCTCTGGCCGTGGCAAC 60.897 57.895 13.76 0.00 44.11 4.17
758 823 5.473066 TTTTTAGTTACGCCTACTGGACT 57.527 39.130 0.00 0.00 34.57 3.85
796 878 0.461961 AGAGATCTAACAGGCACGCC 59.538 55.000 0.00 0.00 0.00 5.68
797 879 1.565305 CAGAGATCTAACAGGCACGC 58.435 55.000 0.00 0.00 0.00 5.34
798 880 1.135915 AGCAGAGATCTAACAGGCACG 59.864 52.381 0.00 0.00 0.00 5.34
799 881 2.977772 AGCAGAGATCTAACAGGCAC 57.022 50.000 0.00 0.00 0.00 5.01
800 882 3.769300 TGTAAGCAGAGATCTAACAGGCA 59.231 43.478 0.00 0.00 0.00 4.75
801 883 4.142049 ACTGTAAGCAGAGATCTAACAGGC 60.142 45.833 15.97 8.30 45.28 4.85
802 884 5.590530 ACTGTAAGCAGAGATCTAACAGG 57.409 43.478 15.97 0.73 45.28 4.00
803 885 6.205784 GCTACTGTAAGCAGAGATCTAACAG 58.794 44.000 0.00 5.84 45.28 3.16
804 886 5.067936 GGCTACTGTAAGCAGAGATCTAACA 59.932 44.000 0.00 0.00 45.28 2.41
805 887 5.525199 GGCTACTGTAAGCAGAGATCTAAC 58.475 45.833 0.00 0.00 45.28 2.34
806 888 4.276183 CGGCTACTGTAAGCAGAGATCTAA 59.724 45.833 0.00 0.00 45.28 2.10
807 889 3.815962 CGGCTACTGTAAGCAGAGATCTA 59.184 47.826 0.00 0.00 45.28 1.98
829 911 1.215647 CGCTACACAGTGGGGACTC 59.784 63.158 5.31 0.00 0.00 3.36
897 986 1.079256 TGTGGGAGGGAGAGTGAGG 59.921 63.158 0.00 0.00 0.00 3.86
913 1002 4.385405 GGCGGCTGCTGAGAGTGT 62.385 66.667 18.85 0.00 42.25 3.55
992 1081 1.756538 TCTCATACTCCATTGCTCGCA 59.243 47.619 0.00 0.00 0.00 5.10
1035 1124 2.744243 GCCTGGATGGAGCTGAGCT 61.744 63.158 6.69 6.69 43.88 4.09
1136 1233 3.444742 ACGAAATATTTCCGGAAAACCCC 59.555 43.478 32.03 18.43 33.68 4.95
1137 1234 4.707030 ACGAAATATTTCCGGAAAACCC 57.293 40.909 32.03 17.80 33.68 4.11
1180 1277 0.321671 TTGGAAACGAGGAGCAGAGG 59.678 55.000 0.00 0.00 0.00 3.69
1414 1520 3.782889 AAACAGATTGGCCGAATAAGC 57.217 42.857 0.00 0.00 0.00 3.09
1424 1530 6.038603 TCTCTTTCACTGACAAAACAGATTGG 59.961 38.462 0.00 0.00 40.63 3.16
1425 1531 7.019774 TCTCTTTCACTGACAAAACAGATTG 57.980 36.000 0.00 0.00 40.63 2.67
1524 1631 3.117888 TCTTCAGAATGGGCCTTGGATAC 60.118 47.826 4.53 0.00 36.16 2.24
1567 1682 9.186323 CATCATCACTTTAGCATGTAGTACTAC 57.814 37.037 23.58 23.58 36.63 2.73
1603 1718 2.438434 CTGATTGGGACACCGGGC 60.438 66.667 6.32 0.00 39.29 6.13
1616 1731 7.177878 ACCATTTGACACTTCTATTTCCTGAT 58.822 34.615 0.00 0.00 0.00 2.90
1669 1784 8.165239 ACTAGTGACATGCAAATTTTTAGACA 57.835 30.769 0.00 0.00 0.00 3.41
1678 1795 9.672673 AATTAGAAGTACTAGTGACATGCAAAT 57.327 29.630 5.39 0.00 32.30 2.32
1679 1796 8.935844 CAATTAGAAGTACTAGTGACATGCAAA 58.064 33.333 5.39 0.00 32.30 3.68
1687 1804 6.106673 GCCAAGCAATTAGAAGTACTAGTGA 58.893 40.000 5.39 0.00 32.30 3.41
1705 1822 2.035530 AGCTCTATCAAGTGCCAAGC 57.964 50.000 0.00 0.00 42.05 4.01
1739 1857 6.773976 TCCTGCCCAAAATATTTCTACTTG 57.226 37.500 0.10 0.00 0.00 3.16
1756 1874 4.440802 CGACCTCTGCTATTATATCCTGCC 60.441 50.000 0.00 0.00 0.00 4.85
1758 1876 4.400884 AGCGACCTCTGCTATTATATCCTG 59.599 45.833 0.00 0.00 41.87 3.86
1761 1879 5.357314 TGGTAGCGACCTCTGCTATTATATC 59.643 44.000 17.46 0.00 45.83 1.63
1764 1882 3.497332 TGGTAGCGACCTCTGCTATTAT 58.503 45.455 17.46 0.00 45.83 1.28
1765 1883 2.940158 TGGTAGCGACCTCTGCTATTA 58.060 47.619 17.46 0.00 45.83 0.98
1794 1912 8.462016 GGAAGCATTACAACTTTCATATGTCTT 58.538 33.333 1.90 0.00 0.00 3.01
1796 1914 7.761409 TGGAAGCATTACAACTTTCATATGTC 58.239 34.615 1.90 0.00 34.71 3.06
1798 1916 9.888878 CTATGGAAGCATTACAACTTTCATATG 57.111 33.333 4.62 0.00 45.84 1.78
1801 1919 8.757982 ATCTATGGAAGCATTACAACTTTCAT 57.242 30.769 2.37 2.37 45.84 2.57
1802 1920 9.679661 TTATCTATGGAAGCATTACAACTTTCA 57.320 29.630 0.00 0.00 45.84 2.69
1909 2028 2.202797 CTGATGACCCTCACGCGG 60.203 66.667 12.47 0.00 0.00 6.46
1981 2100 8.982685 AGAACATCGCATACTAATAATCTGTTG 58.017 33.333 0.00 0.00 0.00 3.33
2043 2164 5.080969 TGATCGGGGAACAAGTAAGTTAG 57.919 43.478 0.00 0.00 0.00 2.34
2054 2175 4.266714 TGTTATTTCCTTGATCGGGGAAC 58.733 43.478 15.80 8.36 40.76 3.62
2060 2181 6.369059 AGCAAGATGTTATTTCCTTGATCG 57.631 37.500 0.00 0.00 38.52 3.69
2073 2194 1.540267 CTGCAAGCAGAGCAAGATGTT 59.460 47.619 16.75 0.00 46.30 2.71
2080 2211 0.949397 CTGAAACTGCAAGCAGAGCA 59.051 50.000 27.17 18.60 46.30 4.26
2114 2245 1.980232 CTGCTGCAGGGCATTTGGA 60.980 57.895 21.71 0.00 41.63 3.53
2150 2281 4.809193 TCTACTGCTGGATCCTTGTCTAT 58.191 43.478 14.23 0.00 0.00 1.98
2176 2307 1.529865 GGCGTGTTCTGAACCTTGTAC 59.470 52.381 17.26 7.80 0.00 2.90
2193 2324 0.868406 GTGAACTGAACTCTTGGGCG 59.132 55.000 0.00 0.00 0.00 6.13
2272 2403 1.271379 AGACCACTGTCGCATTCGTTA 59.729 47.619 0.00 0.00 46.51 3.18
2317 2448 1.186200 TCTCACCTCCATGGAACTCG 58.814 55.000 17.00 3.62 39.71 4.18
2332 2463 3.626680 CTTCGCCGCCGTCTTCTCA 62.627 63.158 0.00 0.00 35.54 3.27
2362 2493 1.104630 CCTGTCTCGAGAAGTACCCC 58.895 60.000 18.55 3.14 0.00 4.95
2374 2505 0.980423 ACTTGGAGGAAGCCTGTCTC 59.020 55.000 0.00 0.00 34.68 3.36
2536 2667 0.532115 GAATGGGGCGAGCAAATGTT 59.468 50.000 0.00 0.00 0.00 2.71
2537 2668 0.611618 TGAATGGGGCGAGCAAATGT 60.612 50.000 0.00 0.00 0.00 2.71
2685 2816 2.241430 TGACCCTTCTGATAGTCCGAGA 59.759 50.000 0.00 0.00 0.00 4.04
2689 2820 2.769095 AGCTTGACCCTTCTGATAGTCC 59.231 50.000 0.00 0.00 0.00 3.85
2717 2848 4.271776 GCAGGGCTTAATTGCAATTGAATC 59.728 41.667 30.43 17.59 37.75 2.52
2905 3036 2.919228 AGTGGTGTTCCTGTTCTTGAC 58.081 47.619 0.00 0.00 34.23 3.18
2993 3124 3.031013 TGTCTTCTCCTATTGATGCCGA 58.969 45.455 0.00 0.00 0.00 5.54
3250 3381 4.791411 GCCGTGTGTTTAGAATTTTCAGCA 60.791 41.667 0.00 0.00 0.00 4.41
3271 3402 4.002906 TCTGATGGAATAATACCGTGCC 57.997 45.455 0.00 0.00 0.00 5.01
3522 3653 1.066286 TGCAAACAAAAGCAGCTGGTT 60.066 42.857 24.96 24.96 35.51 3.67
3523 3654 0.536260 TGCAAACAAAAGCAGCTGGT 59.464 45.000 13.85 13.85 35.51 4.00
3560 3700 8.580720 ACAGGCTACTTAAGAGTATGATATGTG 58.419 37.037 10.09 0.00 37.71 3.21
3561 3701 8.580720 CACAGGCTACTTAAGAGTATGATATGT 58.419 37.037 10.09 0.00 37.71 2.29
3563 3703 7.310113 GCCACAGGCTACTTAAGAGTATGATAT 60.310 40.741 10.09 0.00 46.69 1.63
3564 3704 6.015350 GCCACAGGCTACTTAAGAGTATGATA 60.015 42.308 10.09 0.00 46.69 2.15
3583 3731 4.271049 CGATTTGTCATTACTAGGCCACAG 59.729 45.833 5.01 3.76 0.00 3.66
3587 3735 5.116882 AGAACGATTTGTCATTACTAGGCC 58.883 41.667 0.00 0.00 0.00 5.19
3686 3834 4.069232 CGCTTCTCCTCGGCCACA 62.069 66.667 2.24 0.00 0.00 4.17
3794 3942 2.383527 GCCGCAGCATAGGATACGC 61.384 63.158 0.00 0.00 40.08 4.42
3843 3996 6.982141 CACGACCATATTTTAACAGGCTAGTA 59.018 38.462 0.00 0.00 0.00 1.82
4047 4211 6.747414 TGTTCATATTACTAGCCCACTGAT 57.253 37.500 0.00 0.00 0.00 2.90
4049 4213 7.624360 TTTTGTTCATATTACTAGCCCACTG 57.376 36.000 0.00 0.00 0.00 3.66
4050 4214 7.122204 GGTTTTTGTTCATATTACTAGCCCACT 59.878 37.037 0.00 0.00 0.00 4.00
4053 4217 7.399245 TGGTTTTTGTTCATATTACTAGCCC 57.601 36.000 0.00 0.00 0.00 5.19
4064 4273 6.707161 CAGTCATGGAAATGGTTTTTGTTCAT 59.293 34.615 0.00 0.00 0.00 2.57
4092 4301 3.007398 AGAAAGAAAGGTCGAGTGCATCT 59.993 43.478 0.00 0.00 0.00 2.90
4096 4305 2.872858 ACAAGAAAGAAAGGTCGAGTGC 59.127 45.455 0.00 0.00 0.00 4.40
4101 4310 3.202906 TCACCACAAGAAAGAAAGGTCG 58.797 45.455 0.00 0.00 0.00 4.79
4161 4370 2.292267 CAGCTGGGCCACTTTATGTAG 58.708 52.381 0.00 0.00 0.00 2.74
4243 4455 0.959553 TCAGAGACCCGTGAACACTC 59.040 55.000 3.51 0.00 0.00 3.51
4293 4505 3.857665 TCGCTATTCGCTTTACTGTTCAG 59.142 43.478 0.00 0.00 38.27 3.02
4321 4533 3.068873 GCTATCTCTCTGATTTCACCGGT 59.931 47.826 0.00 0.00 36.65 5.28
4348 4566 0.466372 GCCCCTTCTATTCCACAGCC 60.466 60.000 0.00 0.00 0.00 4.85
4352 4570 1.213296 TCTGGCCCCTTCTATTCCAC 58.787 55.000 0.00 0.00 0.00 4.02
4370 4588 0.531974 TATCAGCCGATGCCCGTTTC 60.532 55.000 0.00 0.00 38.69 2.78
4371 4589 0.814010 GTATCAGCCGATGCCCGTTT 60.814 55.000 0.00 0.00 38.69 3.60
4372 4590 1.227556 GTATCAGCCGATGCCCGTT 60.228 57.895 0.00 0.00 38.69 4.44
4380 4601 2.481276 CCTCGAACATTGTATCAGCCGA 60.481 50.000 0.00 0.00 0.00 5.54
4382 4603 3.179443 TCCTCGAACATTGTATCAGCC 57.821 47.619 0.00 0.00 0.00 4.85
4447 4676 2.488087 AAGCCTCGCTGACACCGTAC 62.488 60.000 0.00 0.00 39.62 3.67
4492 4721 2.849096 TACCGGGCGGACTGACTGAT 62.849 60.000 6.32 0.00 38.96 2.90
4523 4752 9.330063 GATATGAAATGTCAACTGTAGATCCAA 57.670 33.333 0.00 0.00 37.30 3.53
4569 4799 4.447389 GGTCAAAACAATGATTTTGGTCCG 59.553 41.667 15.53 0.00 45.59 4.79
4620 5148 9.567848 CAGATTATGTTAAATTTGTAAAGCGGT 57.432 29.630 0.00 0.00 0.00 5.68
4629 5157 6.697019 CCGAAGGCCAGATTATGTTAAATTTG 59.303 38.462 5.01 0.00 46.14 2.32
4696 5224 0.233848 GGTACTTTGCCACGTCAACG 59.766 55.000 0.12 0.12 46.33 4.10
4756 5286 4.728772 TCAAGGAGAAAGAATGGCTTTGA 58.271 39.130 0.00 0.00 46.52 2.69
4776 5307 3.644884 GAACCTCTCTGTTCGTTCTCA 57.355 47.619 0.00 0.00 35.70 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.