Multiple sequence alignment - TraesCS2D01G464700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G464700 chr2D 100.000 6155 0 0 1 6155 570108541 570114695 0.000000e+00 11367.0
1 TraesCS2D01G464700 chr2B 88.194 3007 170 81 2873 5780 682742845 682745765 0.000000e+00 3415.0
2 TraesCS2D01G464700 chr2B 89.953 1065 50 21 587 1614 682740585 682741629 0.000000e+00 1321.0
3 TraesCS2D01G464700 chr2B 85.090 1053 61 35 1648 2636 682741692 682742712 0.000000e+00 987.0
4 TraesCS2D01G464700 chr2B 84.539 608 49 11 1 563 682739765 682740372 1.500000e-155 560.0
5 TraesCS2D01G464700 chr2A 93.458 1758 52 18 3717 5422 709247832 709249578 0.000000e+00 2551.0
6 TraesCS2D01G464700 chr2A 88.696 1265 81 23 2436 3678 709246600 709247824 0.000000e+00 1487.0
7 TraesCS2D01G464700 chr2A 88.506 957 54 17 1035 1970 709245322 709246243 0.000000e+00 1107.0
8 TraesCS2D01G464700 chr2A 83.228 1109 95 40 1 1047 709244217 709245296 0.000000e+00 933.0
9 TraesCS2D01G464700 chr2A 85.860 587 59 7 1 565 709243226 709243810 2.450000e-168 603.0
10 TraesCS2D01G464700 chr2A 92.593 297 12 7 2154 2446 709246287 709246577 9.540000e-113 418.0
11 TraesCS2D01G464700 chr2A 91.667 108 9 0 5473 5580 709252897 709253004 3.840000e-32 150.0
12 TraesCS2D01G464700 chr2A 80.451 133 21 4 5666 5795 1259883 1259753 5.080000e-16 97.1
13 TraesCS2D01G464700 chr6D 89.166 1163 66 27 4342 5481 229655040 229656165 0.000000e+00 1395.0
14 TraesCS2D01G464700 chr6D 85.584 437 37 7 5666 6078 39087439 39087005 9.480000e-118 435.0
15 TraesCS2D01G464700 chr3A 88.486 634 50 12 4343 4963 458523966 458523343 0.000000e+00 745.0
16 TraesCS2D01G464700 chr3A 88.265 588 36 22 4901 5476 458523342 458522776 0.000000e+00 673.0
17 TraesCS2D01G464700 chr3A 85.544 671 54 23 4824 5475 207730626 207729980 0.000000e+00 662.0
18 TraesCS2D01G464700 chr3A 89.394 198 16 2 4541 4733 207730823 207730626 1.710000e-60 244.0
19 TraesCS2D01G464700 chr1A 86.996 669 46 21 4824 5475 555421178 555421822 0.000000e+00 715.0
20 TraesCS2D01G464700 chr1A 91.919 198 11 1 4541 4733 555420981 555421178 7.860000e-69 272.0
21 TraesCS2D01G464700 chr5A 87.778 630 44 18 4824 5444 447028058 447027453 0.000000e+00 706.0
22 TraesCS2D01G464700 chr5A 88.099 605 41 14 4824 5420 630198407 630198988 0.000000e+00 689.0
23 TraesCS2D01G464700 chr5A 90.909 198 13 1 4541 4733 447028255 447028058 1.700000e-65 261.0
24 TraesCS2D01G464700 chr5A 84.343 198 14 2 4541 4733 630198222 630198407 1.760000e-40 178.0
25 TraesCS2D01G464700 chr7B 92.704 233 9 3 4996 5220 736135582 736135350 4.600000e-86 329.0
26 TraesCS2D01G464700 chr4B 79.326 445 70 16 5662 6089 431568568 431568129 6.030000e-75 292.0
27 TraesCS2D01G464700 chr4B 86.260 131 16 2 5870 5999 227472538 227472667 2.310000e-29 141.0
28 TraesCS2D01G464700 chr6B 81.295 139 23 3 5663 5799 704406475 704406338 6.520000e-20 110.0
29 TraesCS2D01G464700 chr4D 81.481 135 23 2 5664 5796 122174722 122174856 6.520000e-20 110.0
30 TraesCS2D01G464700 chr3B 83.193 119 17 3 5664 5780 109368038 109367921 8.440000e-19 106.0
31 TraesCS2D01G464700 chr1B 80.916 131 23 2 5664 5792 612427955 612427825 1.090000e-17 102.0
32 TraesCS2D01G464700 chr1B 83.962 106 12 4 5660 5762 616964276 616964379 5.080000e-16 97.1
33 TraesCS2D01G464700 chr4A 78.667 150 30 2 5666 5813 82662827 82662976 1.410000e-16 99.0
34 TraesCS2D01G464700 chr5B 80.916 131 18 6 5666 5792 503309390 503309517 5.080000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G464700 chr2D 570108541 570114695 6154 False 11367.000000 11367 100.0000 1 6155 1 chr2D.!!$F1 6154
1 TraesCS2D01G464700 chr2B 682739765 682745765 6000 False 1570.750000 3415 86.9440 1 5780 4 chr2B.!!$F1 5779
2 TraesCS2D01G464700 chr2A 709243226 709253004 9778 False 1035.571429 2551 89.1440 1 5580 7 chr2A.!!$F1 5579
3 TraesCS2D01G464700 chr6D 229655040 229656165 1125 False 1395.000000 1395 89.1660 4342 5481 1 chr6D.!!$F1 1139
4 TraesCS2D01G464700 chr3A 458522776 458523966 1190 True 709.000000 745 88.3755 4343 5476 2 chr3A.!!$R2 1133
5 TraesCS2D01G464700 chr3A 207729980 207730823 843 True 453.000000 662 87.4690 4541 5475 2 chr3A.!!$R1 934
6 TraesCS2D01G464700 chr1A 555420981 555421822 841 False 493.500000 715 89.4575 4541 5475 2 chr1A.!!$F1 934
7 TraesCS2D01G464700 chr5A 447027453 447028255 802 True 483.500000 706 89.3435 4541 5444 2 chr5A.!!$R1 903
8 TraesCS2D01G464700 chr5A 630198222 630198988 766 False 433.500000 689 86.2210 4541 5420 2 chr5A.!!$F1 879


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 1963 0.954452 AAAGGCACGAGAAAGGCAAG 59.046 50.0 0.0 0.0 0.00 4.01 F
2290 3684 0.094216 CGACGCACTTTCAGATGCAG 59.906 55.0 0.0 0.0 42.17 4.41 F
3317 4756 0.108089 AGGTACGCACACACACACAA 60.108 50.0 0.0 0.0 0.00 3.33 F
4149 5614 0.035439 CCCACCACACACCCTACATC 60.035 60.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2670 4097 0.111253 CCATGGCATTCCCTACTCCC 59.889 60.0 0.00 0.0 0.00 4.30 R
3352 4791 0.311165 GATCGATCGTCGGTGATGGT 59.689 55.0 15.94 0.0 40.88 3.55 R
4832 6340 0.168128 ACACGGATAAAAGCTTGCGC 59.832 50.0 0.00 0.0 0.00 6.09 R
5911 10835 0.032130 GTCACAGAACTCGTGCTCCA 59.968 55.0 0.00 0.0 34.27 3.86 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 45 7.527084 TTTGACTTATCCAAAACAAAAACGG 57.473 32.000 0.00 0.00 31.36 4.44
44 46 5.593010 TGACTTATCCAAAACAAAAACGGG 58.407 37.500 0.00 0.00 0.00 5.28
82 84 0.981183 ACTTACATGGGCACGGAAGA 59.019 50.000 0.00 0.00 0.00 2.87
86 88 1.247567 ACATGGGCACGGAAGAAAAG 58.752 50.000 0.00 0.00 0.00 2.27
148 150 8.416329 GCCTACAAAATATTCAACCATCTCAAT 58.584 33.333 0.00 0.00 0.00 2.57
157 159 3.831883 CATCTCAATGGGGTGGCG 58.168 61.111 0.00 0.00 0.00 5.69
181 183 5.248870 TGACAAAACTGAAGGCTCTTTTC 57.751 39.130 0.00 0.00 0.00 2.29
206 208 1.670791 AACCGACACACCGAATGTTT 58.329 45.000 0.00 0.00 40.64 2.83
235 237 4.754322 AGTTGTCGTGCACATATCATACA 58.246 39.130 18.64 6.01 33.90 2.29
236 238 4.805719 AGTTGTCGTGCACATATCATACAG 59.194 41.667 18.64 0.00 33.90 2.74
304 324 1.894466 CCAAGGTCATGGTGCAAATGA 59.106 47.619 8.83 8.83 35.65 2.57
310 330 3.509575 GGTCATGGTGCAAATGAACCTTA 59.490 43.478 14.92 0.00 44.46 2.69
314 334 6.095440 GTCATGGTGCAAATGAACCTTATAGT 59.905 38.462 11.82 0.00 44.46 2.12
319 339 4.159506 TGCAAATGAACCTTATAGTTGGGC 59.840 41.667 0.00 0.00 0.00 5.36
348 368 1.134995 TCGCGTCATCAGCAAATCTCT 60.135 47.619 5.77 0.00 34.19 3.10
349 369 1.662629 CGCGTCATCAGCAAATCTCTT 59.337 47.619 0.00 0.00 34.19 2.85
459 505 3.784511 AGAATGGGAGCACATGATAGG 57.215 47.619 0.00 0.00 0.00 2.57
468 514 2.069273 GCACATGATAGGTCGGCATAC 58.931 52.381 0.00 0.00 0.00 2.39
492 1533 3.052717 AGGGAGAGAGTAGGAGGGTTTAC 60.053 52.174 0.00 0.00 0.00 2.01
509 1550 5.451798 GGGTTTACATGGAAAATGCGATCAT 60.452 40.000 4.20 0.00 33.53 2.45
519 1560 2.643995 ATGCGATCATGGTTGGATCA 57.356 45.000 0.00 0.00 40.93 2.92
527 1568 3.689347 TCATGGTTGGATCAGAACCTTG 58.311 45.455 23.07 23.07 44.39 3.61
538 1579 3.390135 TCAGAACCTTGAACACGATGAC 58.610 45.455 0.00 0.00 0.00 3.06
565 1606 1.286501 GCATCTTACAATCGTGCGGA 58.713 50.000 0.00 0.00 0.00 5.54
566 1607 1.663643 GCATCTTACAATCGTGCGGAA 59.336 47.619 0.00 0.00 0.00 4.30
568 1609 2.736144 TCTTACAATCGTGCGGAAGT 57.264 45.000 0.00 0.00 0.00 3.01
571 1612 4.109766 TCTTACAATCGTGCGGAAGTATG 58.890 43.478 0.00 0.00 0.00 2.39
572 1613 2.380084 ACAATCGTGCGGAAGTATGT 57.620 45.000 0.00 0.00 34.13 2.29
575 1616 4.439057 ACAATCGTGCGGAAGTATGTATT 58.561 39.130 2.47 0.00 34.13 1.89
577 1618 3.088194 TCGTGCGGAAGTATGTATTCC 57.912 47.619 0.00 0.00 42.41 3.01
585 1815 4.051922 GGAAGTATGTATTCCGTGCTCAG 58.948 47.826 0.00 0.00 37.10 3.35
620 1851 4.325204 TCGAATAACATATATTCCGCGCAC 59.675 41.667 8.75 0.00 31.96 5.34
621 1852 4.326278 CGAATAACATATATTCCGCGCACT 59.674 41.667 8.75 0.00 31.96 4.40
636 1867 2.882742 GCACTCTAAAAGCGGAAGTG 57.117 50.000 0.00 0.00 0.00 3.16
643 1874 6.797033 CACTCTAAAAGCGGAAGTGTTTATTG 59.203 38.462 0.00 0.00 0.00 1.90
728 1963 0.954452 AAAGGCACGAGAAAGGCAAG 59.046 50.000 0.00 0.00 0.00 4.01
757 1992 2.020926 GCTAGCTAGCCTGCAAAGC 58.979 57.895 31.67 9.06 43.39 3.51
789 2035 1.671166 GGTGGCCATGACAAAACCC 59.329 57.895 9.72 0.00 0.00 4.11
1198 2525 4.144727 GAGGAGGAGAGGGCCGGA 62.145 72.222 5.05 0.00 0.00 5.14
1424 2751 4.873746 TCGCTAATAATCTCCTTCCCTG 57.126 45.455 0.00 0.00 0.00 4.45
1425 2752 4.223953 TCGCTAATAATCTCCTTCCCTGT 58.776 43.478 0.00 0.00 0.00 4.00
1426 2753 4.654262 TCGCTAATAATCTCCTTCCCTGTT 59.346 41.667 0.00 0.00 0.00 3.16
1427 2754 4.991687 CGCTAATAATCTCCTTCCCTGTTC 59.008 45.833 0.00 0.00 0.00 3.18
1428 2755 4.991687 GCTAATAATCTCCTTCCCTGTTCG 59.008 45.833 0.00 0.00 0.00 3.95
1429 2756 5.453480 GCTAATAATCTCCTTCCCTGTTCGT 60.453 44.000 0.00 0.00 0.00 3.85
1430 2757 2.770164 AATCTCCTTCCCTGTTCGTG 57.230 50.000 0.00 0.00 0.00 4.35
1431 2758 0.905357 ATCTCCTTCCCTGTTCGTGG 59.095 55.000 0.00 0.00 0.00 4.94
1432 2759 1.376037 CTCCTTCCCTGTTCGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
1433 2760 2.359975 CCTTCCCTGTTCGTGGCC 60.360 66.667 0.00 0.00 0.00 5.36
1434 2761 2.742372 CTTCCCTGTTCGTGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
1435 2762 4.323477 TTCCCTGTTCGTGGCCGG 62.323 66.667 0.00 0.00 33.95 6.13
1535 2862 3.659444 CGAGACACGAAACTGAAATTTGC 59.341 43.478 0.00 0.00 45.77 3.68
1569 2896 5.056480 ACTTTGAATTACTTTTGGCTTGCC 58.944 37.500 4.43 4.43 0.00 4.52
1605 2938 6.451393 TGTTAATTATGTGAACAAAGTGGCC 58.549 36.000 0.00 0.00 30.37 5.36
1614 2947 2.674796 ACAAAGTGGCCGAGATAGTC 57.325 50.000 0.00 0.00 0.00 2.59
1699 3061 3.556543 AAACGCGTGCAGGCCAATG 62.557 57.895 24.50 13.38 0.00 2.82
1729 3091 2.412325 CGTGGCCGCGGATAAATTAATC 60.412 50.000 33.48 6.40 0.00 1.75
1840 3228 2.227968 GAATGCCGCCGCGATGATAC 62.228 60.000 15.93 0.00 38.08 2.24
1843 3231 2.087009 GCCGCCGCGATGATACTAC 61.087 63.158 15.93 0.00 0.00 2.73
1844 3232 1.284715 CCGCCGCGATGATACTACA 59.715 57.895 15.93 0.00 0.00 2.74
1845 3233 0.729478 CCGCCGCGATGATACTACAG 60.729 60.000 15.93 0.00 0.00 2.74
1856 3246 2.548480 TGATACTACAGCGAGACATCCG 59.452 50.000 0.00 0.00 0.00 4.18
1915 3305 9.947433 TTATTTTACAAGGAAGGAGACGAAATA 57.053 29.630 0.00 0.00 0.00 1.40
1919 3309 4.527038 ACAAGGAAGGAGACGAAATACAGA 59.473 41.667 0.00 0.00 0.00 3.41
1927 3317 9.535878 GAAGGAGACGAAATACAGAGAATAATT 57.464 33.333 0.00 0.00 0.00 1.40
1928 3318 9.892130 AAGGAGACGAAATACAGAGAATAATTT 57.108 29.630 0.00 0.00 0.00 1.82
1956 3346 1.025041 GCCCGTGATTTCTTGATCCC 58.975 55.000 0.00 0.00 0.00 3.85
1970 3360 2.825223 TGATCCCTGAGAAGAGCAGAA 58.175 47.619 0.00 0.00 35.39 3.02
1973 3363 4.226846 TGATCCCTGAGAAGAGCAGAAATT 59.773 41.667 0.00 0.00 35.39 1.82
1974 3364 5.426509 TGATCCCTGAGAAGAGCAGAAATTA 59.573 40.000 0.00 0.00 35.39 1.40
2040 3433 2.716217 CCTAAGGTCTTTGCTTCCCAG 58.284 52.381 0.00 0.00 0.00 4.45
2075 3468 3.618351 AGCAGAAATTCCATGTCCTGAG 58.382 45.455 0.00 0.00 0.00 3.35
2079 3472 5.706916 CAGAAATTCCATGTCCTGAGTTTG 58.293 41.667 0.00 0.00 0.00 2.93
2080 3473 4.768968 AGAAATTCCATGTCCTGAGTTTGG 59.231 41.667 0.00 0.00 0.00 3.28
2095 3488 3.928375 GAGTTTGGTACCGCGAGAATTTA 59.072 43.478 8.23 0.00 0.00 1.40
2097 3490 4.152938 AGTTTGGTACCGCGAGAATTTAAC 59.847 41.667 8.23 3.72 0.00 2.01
2098 3491 2.620242 TGGTACCGCGAGAATTTAACC 58.380 47.619 8.23 3.48 0.00 2.85
2100 3493 3.264947 GGTACCGCGAGAATTTAACCTT 58.735 45.455 8.23 0.00 0.00 3.50
2101 3494 3.686241 GGTACCGCGAGAATTTAACCTTT 59.314 43.478 8.23 0.00 0.00 3.11
2103 3496 4.841443 ACCGCGAGAATTTAACCTTTTT 57.159 36.364 8.23 0.00 0.00 1.94
2152 3545 4.904253 ACGTTCCTAGATTACTCTGCTC 57.096 45.455 0.00 0.00 32.66 4.26
2230 3624 0.527817 GTACGACCTGGATTCCTGCG 60.528 60.000 0.00 6.21 0.00 5.18
2231 3625 0.968901 TACGACCTGGATTCCTGCGT 60.969 55.000 15.62 15.62 0.00 5.24
2236 3630 3.958147 CTGGATTCCTGCGTGCCGT 62.958 63.158 3.95 0.00 0.00 5.68
2290 3684 0.094216 CGACGCACTTTCAGATGCAG 59.906 55.000 0.00 0.00 42.17 4.41
2399 3793 2.600470 TGCTTTTTCACCTTTGCCTG 57.400 45.000 0.00 0.00 0.00 4.85
2571 3998 2.408271 CCACATGATGGTGCTAGTGT 57.592 50.000 0.00 0.00 44.46 3.55
2599 4026 0.656259 GGAAAATAACTCGGAGGCGC 59.344 55.000 10.23 0.00 0.00 6.53
2600 4027 1.653151 GAAAATAACTCGGAGGCGCT 58.347 50.000 7.64 0.00 0.00 5.92
2625 4052 1.019278 CCACGTTCCAGTCCCATTCG 61.019 60.000 0.00 0.00 0.00 3.34
2654 4081 4.273969 ACCCACGTGTACTTGTGTATTTTG 59.726 41.667 15.65 0.00 34.28 2.44
2678 4105 7.290061 TGAAGAAAAATATGATGGGGAGTAGG 58.710 38.462 0.00 0.00 0.00 3.18
2708 4135 7.284489 TGCCATGGTAAAAATAGTCCATACTTC 59.716 37.037 14.67 0.00 38.43 3.01
2768 4199 2.095567 ACATTGTCTGTCGCTGCATTTC 60.096 45.455 0.00 0.00 29.94 2.17
2822 4253 1.070914 GGGATTCCGAGAATCTGGTCC 59.929 57.143 19.43 12.06 32.04 4.46
2852 4283 2.413837 GCTGTAAATCCGTGTCAGTGT 58.586 47.619 0.00 0.00 0.00 3.55
2856 4287 1.779569 AAATCCGTGTCAGTGTCGTC 58.220 50.000 0.00 0.00 0.00 4.20
2881 4312 1.156736 CTACCAAAACGTCCCAGCAG 58.843 55.000 0.00 0.00 0.00 4.24
2899 4330 2.154462 CAGAGCAAAAGTACCACAGGG 58.846 52.381 0.00 0.00 41.29 4.45
2900 4331 0.881796 GAGCAAAAGTACCACAGGGC 59.118 55.000 0.00 0.00 37.90 5.19
2936 4367 5.846203 ACTCTGAATCAAAATGTTGTTGGG 58.154 37.500 0.00 0.00 36.07 4.12
2958 4389 2.885861 GAGTGGCACGACGATCCT 59.114 61.111 12.71 0.00 0.00 3.24
2962 4393 2.434185 GGCACGACGATCCTGCAA 60.434 61.111 0.00 0.00 32.20 4.08
2990 4424 5.009911 TCAGCTGTGATGTGCAGTAATTTTT 59.990 36.000 14.67 0.00 36.42 1.94
2991 4425 5.118050 CAGCTGTGATGTGCAGTAATTTTTG 59.882 40.000 5.25 0.00 36.42 2.44
2992 4426 4.143263 GCTGTGATGTGCAGTAATTTTTGC 60.143 41.667 6.85 6.85 40.67 3.68
2993 4427 5.199024 TGTGATGTGCAGTAATTTTTGCT 57.801 34.783 13.05 0.00 40.87 3.91
2995 4429 4.386652 GTGATGTGCAGTAATTTTTGCTGG 59.613 41.667 13.05 0.00 42.68 4.85
2999 4433 3.740832 GTGCAGTAATTTTTGCTGGTTCC 59.259 43.478 13.05 0.00 42.68 3.62
3000 4434 2.986479 GCAGTAATTTTTGCTGGTTCCG 59.014 45.455 7.32 0.00 42.68 4.30
3001 4435 3.552068 GCAGTAATTTTTGCTGGTTCCGT 60.552 43.478 7.32 0.00 42.68 4.69
3002 4436 4.320641 GCAGTAATTTTTGCTGGTTCCGTA 60.321 41.667 7.32 0.00 42.68 4.02
3179 4618 0.466189 ACAAGTCCAAGCTGGTGGTG 60.466 55.000 4.36 0.00 39.03 4.17
3303 4742 0.872021 CAAGCTCGCCGATCAGGTAC 60.872 60.000 0.00 0.00 43.70 3.34
3309 4748 2.165301 GCCGATCAGGTACGCACAC 61.165 63.158 0.00 0.00 43.70 3.82
3310 4749 1.214325 CCGATCAGGTACGCACACA 59.786 57.895 0.00 0.00 34.51 3.72
3317 4756 0.108089 AGGTACGCACACACACACAA 60.108 50.000 0.00 0.00 0.00 3.33
3321 4760 1.297819 CGCACACACACACAAGCAG 60.298 57.895 0.00 0.00 0.00 4.24
3322 4761 1.802636 GCACACACACACAAGCAGT 59.197 52.632 0.00 0.00 0.00 4.40
3323 4762 0.171007 GCACACACACACAAGCAGTT 59.829 50.000 0.00 0.00 0.00 3.16
3324 4763 1.795162 GCACACACACACAAGCAGTTC 60.795 52.381 0.00 0.00 0.00 3.01
3325 4764 1.468127 CACACACACACAAGCAGTTCA 59.532 47.619 0.00 0.00 0.00 3.18
3326 4765 1.468520 ACACACACACAAGCAGTTCAC 59.531 47.619 0.00 0.00 0.00 3.18
3327 4766 1.468127 CACACACACAAGCAGTTCACA 59.532 47.619 0.00 0.00 0.00 3.58
3330 4769 3.312421 ACACACACAAGCAGTTCACATAC 59.688 43.478 0.00 0.00 0.00 2.39
3332 4771 4.749598 CACACACAAGCAGTTCACATACTA 59.250 41.667 0.00 0.00 0.00 1.82
3333 4772 4.750098 ACACACAAGCAGTTCACATACTAC 59.250 41.667 0.00 0.00 0.00 2.73
3335 4774 4.991056 ACACAAGCAGTTCACATACTACTG 59.009 41.667 0.00 0.00 41.64 2.74
3339 4778 6.542370 ACAAGCAGTTCACATACTACTGTTTT 59.458 34.615 0.00 0.00 40.03 2.43
3340 4779 7.067008 ACAAGCAGTTCACATACTACTGTTTTT 59.933 33.333 0.00 0.00 40.03 1.94
3379 4818 1.457738 CGACGATCGATCACTGACAC 58.542 55.000 24.34 6.76 43.74 3.67
3388 4831 1.723542 GATCACTGACACAACGAGCTG 59.276 52.381 0.00 0.00 0.00 4.24
3389 4832 0.459899 TCACTGACACAACGAGCTGT 59.540 50.000 0.00 0.00 0.00 4.40
3391 4834 1.258982 CACTGACACAACGAGCTGTTC 59.741 52.381 0.00 0.00 39.29 3.18
3392 4835 1.137086 ACTGACACAACGAGCTGTTCT 59.863 47.619 0.00 0.00 39.29 3.01
3393 4836 2.205074 CTGACACAACGAGCTGTTCTT 58.795 47.619 0.00 0.00 39.29 2.52
3394 4837 1.933181 TGACACAACGAGCTGTTCTTG 59.067 47.619 0.00 0.00 39.29 3.02
3395 4838 2.201732 GACACAACGAGCTGTTCTTGA 58.798 47.619 0.00 0.00 39.29 3.02
3397 4840 1.933181 CACAACGAGCTGTTCTTGACA 59.067 47.619 0.00 0.00 39.29 3.58
3412 4855 8.725405 TGTTCTTGACAGTCAATAACAGTTTA 57.275 30.769 29.77 15.74 43.66 2.01
3415 4858 6.422701 TCTTGACAGTCAATAACAGTTTACCG 59.577 38.462 16.53 0.67 35.59 4.02
3419 4862 7.874016 TGACAGTCAATAACAGTTTACCGTATT 59.126 33.333 0.00 0.00 0.00 1.89
3420 4863 8.611654 ACAGTCAATAACAGTTTACCGTATTT 57.388 30.769 0.00 0.00 0.00 1.40
3421 4864 9.709495 ACAGTCAATAACAGTTTACCGTATTTA 57.291 29.630 0.00 0.00 0.00 1.40
3425 4868 9.090692 TCAATAACAGTTTACCGTATTTAGAGC 57.909 33.333 0.00 0.00 0.00 4.09
3426 4869 8.333186 CAATAACAGTTTACCGTATTTAGAGCC 58.667 37.037 0.00 0.00 0.00 4.70
3433 4876 6.645790 TTACCGTATTTAGAGCCTTAGAGG 57.354 41.667 0.00 0.00 38.80 3.69
3445 4888 2.588620 CCTTAGAGGTGATCTAGCGGT 58.411 52.381 0.00 0.00 41.57 5.68
3526 4981 5.104900 TCCTAGAAGGGAATTAGTTGCAGTC 60.105 44.000 0.00 0.00 35.59 3.51
3576 5031 2.825836 CAGGCATGGGACGGAAGC 60.826 66.667 0.00 0.00 0.00 3.86
3614 5069 1.367659 TCGCATTGAATCGCATGTCA 58.632 45.000 0.00 0.00 0.00 3.58
3615 5070 1.328374 TCGCATTGAATCGCATGTCAG 59.672 47.619 0.00 0.00 0.00 3.51
3645 5100 4.101790 AGCAAATTGACGCCGCGG 62.102 61.111 24.05 24.05 0.00 6.46
3664 5119 1.433534 GGCTCGTCCAAGAAACAGAG 58.566 55.000 0.00 0.00 34.01 3.35
3725 5180 1.065491 GGTCATGTACTGATGTGGGCA 60.065 52.381 0.00 0.00 35.97 5.36
3815 5270 1.472552 CGGCATTACGACAGGAATCCA 60.473 52.381 0.61 0.00 35.47 3.41
3856 5314 2.826128 TGACGAGTAACAAGGATGCTCT 59.174 45.455 0.00 0.00 0.00 4.09
3857 5315 3.119459 TGACGAGTAACAAGGATGCTCTC 60.119 47.826 0.00 0.00 0.00 3.20
3858 5316 2.166664 ACGAGTAACAAGGATGCTCTCC 59.833 50.000 0.00 0.00 45.33 3.71
3911 5369 2.651361 CTGCGTCTGTCGTCCCTT 59.349 61.111 0.00 0.00 42.13 3.95
3952 5410 5.937540 TCTGAAGCTGATCGGATGTTAAAAA 59.062 36.000 5.48 0.00 29.78 1.94
4149 5614 0.035439 CCCACCACACACCCTACATC 60.035 60.000 0.00 0.00 0.00 3.06
4160 5625 0.740868 CCCTACATCCACTGCACACG 60.741 60.000 0.00 0.00 0.00 4.49
4170 5635 0.108585 ACTGCACACGGATCAGGTTT 59.891 50.000 0.00 0.00 32.42 3.27
4171 5636 1.346395 ACTGCACACGGATCAGGTTTA 59.654 47.619 0.00 0.00 32.42 2.01
4172 5637 2.002586 CTGCACACGGATCAGGTTTAG 58.997 52.381 0.00 0.00 0.00 1.85
4413 5887 0.877071 ACGTACGTGGTCCAGTACAG 59.123 55.000 22.14 17.68 42.26 2.74
4517 5997 0.613777 CCTGGAGTGTACCCTGAACC 59.386 60.000 0.00 0.00 0.00 3.62
4518 5998 1.645710 CTGGAGTGTACCCTGAACCT 58.354 55.000 0.00 0.00 0.00 3.50
4519 5999 1.276421 CTGGAGTGTACCCTGAACCTG 59.724 57.143 0.00 0.00 0.00 4.00
4520 6000 1.132977 TGGAGTGTACCCTGAACCTGA 60.133 52.381 0.00 0.00 0.00 3.86
4521 6001 1.550976 GGAGTGTACCCTGAACCTGAG 59.449 57.143 0.00 0.00 0.00 3.35
4522 6002 0.977395 AGTGTACCCTGAACCTGAGC 59.023 55.000 0.00 0.00 0.00 4.26
4523 6003 0.685097 GTGTACCCTGAACCTGAGCA 59.315 55.000 0.00 0.00 0.00 4.26
4607 6102 0.994247 ATGAATGTGCTCCCTGACCA 59.006 50.000 0.00 0.00 0.00 4.02
4832 6340 5.639757 TGACATGCGGATAAACAATTTGAG 58.360 37.500 2.79 0.00 0.00 3.02
4833 6341 4.423732 ACATGCGGATAAACAATTTGAGC 58.576 39.130 2.79 0.00 0.00 4.26
4908 6478 3.406764 CCAGTGTCTTGGAGAAGAAAGG 58.593 50.000 0.00 0.00 40.00 3.11
4990 6561 1.227823 TGCTCAAGGTGTCCAACGG 60.228 57.895 0.00 0.00 0.00 4.44
5038 6609 0.314302 AAGTGGGAGACGTTCGACAG 59.686 55.000 0.00 0.00 0.00 3.51
5079 6650 2.374184 AGTGGGAGATCTTCGACTGAG 58.626 52.381 17.22 0.00 0.00 3.35
5292 6903 1.144057 ACCCGCTCGATTGATGGAC 59.856 57.895 3.44 0.00 0.00 4.02
5293 6904 1.951130 CCCGCTCGATTGATGGACG 60.951 63.158 3.44 0.00 0.00 4.79
5294 6905 1.951130 CCGCTCGATTGATGGACGG 60.951 63.158 0.00 0.00 0.00 4.79
5295 6906 1.065764 CGCTCGATTGATGGACGGA 59.934 57.895 0.00 0.00 0.00 4.69
5425 7049 2.343163 GATGGGTCTCACTCGCCGAG 62.343 65.000 13.52 13.52 35.52 4.63
5431 7059 1.515952 CTCACTCGCCGAGAAGCAG 60.516 63.158 22.80 6.55 33.32 4.24
5444 7072 3.993081 CGAGAAGCAGATGGGATTATGTC 59.007 47.826 0.00 0.00 0.00 3.06
5446 7074 4.970711 AGAAGCAGATGGGATTATGTCAG 58.029 43.478 0.00 0.00 0.00 3.51
5447 7075 4.411540 AGAAGCAGATGGGATTATGTCAGT 59.588 41.667 0.00 0.00 0.00 3.41
5452 7084 5.238214 GCAGATGGGATTATGTCAGTCTTTC 59.762 44.000 0.00 0.00 0.00 2.62
5463 7096 0.734253 CAGTCTTTCGCGCTAGCACT 60.734 55.000 16.45 5.64 45.49 4.40
5470 10333 1.089112 TCGCGCTAGCACTGTACTAA 58.911 50.000 16.45 0.00 45.49 2.24
5496 10408 3.733960 CGCCGACGAGACCAGACA 61.734 66.667 0.00 0.00 43.93 3.41
5608 10526 0.389948 CGCTAGGCAAAGGAGAACGT 60.390 55.000 0.00 0.00 0.00 3.99
5655 10578 3.283684 CGAAGCCCACGCCAAACA 61.284 61.111 0.00 0.00 34.57 2.83
5656 10579 2.644992 GAAGCCCACGCCAAACAG 59.355 61.111 0.00 0.00 34.57 3.16
5657 10580 3.558099 GAAGCCCACGCCAAACAGC 62.558 63.158 0.00 0.00 34.57 4.40
5683 10606 4.554330 CGGGTGGCAAAATTTCATGTTTTG 60.554 41.667 13.09 13.09 45.01 2.44
5692 10615 7.220491 GCAAAATTTCATGTTTTGACCCTTTTG 59.780 33.333 18.93 11.61 45.02 2.44
5693 10616 6.940831 AATTTCATGTTTTGACCCTTTTGG 57.059 33.333 0.00 0.00 41.37 3.28
5720 10643 1.481871 TAACAGGATCTGACCCCGTC 58.518 55.000 1.59 0.00 35.18 4.79
5721 10644 1.265454 AACAGGATCTGACCCCGTCC 61.265 60.000 1.59 0.00 35.18 4.79
5725 10648 1.610554 GGATCTGACCCCGTCCGAAA 61.611 60.000 0.00 0.00 30.40 3.46
5727 10650 0.036671 ATCTGACCCCGTCCGAAAAC 60.037 55.000 0.00 0.00 30.40 2.43
5733 10656 1.240256 CCCCGTCCGAAAACATTTCA 58.760 50.000 3.98 0.00 0.00 2.69
5734 10657 1.609555 CCCCGTCCGAAAACATTTCAA 59.390 47.619 3.98 0.00 0.00 2.69
5748 10672 9.317936 GAAAACATTTCAAGATCTGACCTTTTT 57.682 29.630 0.00 0.00 32.21 1.94
5763 10687 1.135068 TTTTTCCTACCGCCAGGGGA 61.135 55.000 4.70 0.00 43.47 4.81
5764 10688 1.135068 TTTTCCTACCGCCAGGGGAA 61.135 55.000 4.70 0.00 43.47 3.97
5765 10689 1.135068 TTTCCTACCGCCAGGGGAAA 61.135 55.000 4.70 3.90 42.05 3.13
5776 10700 2.194868 GGGGAAATGGCGGTAGGG 59.805 66.667 0.00 0.00 0.00 3.53
5780 10704 0.034863 GGAAATGGCGGTAGGGTTGA 60.035 55.000 0.00 0.00 0.00 3.18
5781 10705 1.614850 GGAAATGGCGGTAGGGTTGAA 60.615 52.381 0.00 0.00 0.00 2.69
5782 10706 1.471287 GAAATGGCGGTAGGGTTGAAC 59.529 52.381 0.00 0.00 0.00 3.18
5783 10707 0.402504 AATGGCGGTAGGGTTGAACA 59.597 50.000 0.00 0.00 0.00 3.18
5784 10708 0.035439 ATGGCGGTAGGGTTGAACAG 60.035 55.000 0.00 0.00 0.00 3.16
5785 10709 1.376812 GGCGGTAGGGTTGAACAGG 60.377 63.158 0.00 0.00 0.00 4.00
5786 10710 2.038837 GCGGTAGGGTTGAACAGGC 61.039 63.158 0.00 0.00 0.00 4.85
5787 10711 1.677552 CGGTAGGGTTGAACAGGCT 59.322 57.895 0.00 0.00 0.00 4.58
5788 10712 0.899720 CGGTAGGGTTGAACAGGCTA 59.100 55.000 0.00 0.00 0.00 3.93
5789 10713 1.405121 CGGTAGGGTTGAACAGGCTAC 60.405 57.143 0.00 0.00 0.00 3.58
5790 10714 1.065636 GGTAGGGTTGAACAGGCTACC 60.066 57.143 0.00 0.00 33.67 3.18
5791 10715 0.899720 TAGGGTTGAACAGGCTACCG 59.100 55.000 0.00 0.00 34.99 4.02
5792 10716 1.376812 GGGTTGAACAGGCTACCGG 60.377 63.158 0.00 0.00 34.99 5.28
5793 10717 2.038837 GGTTGAACAGGCTACCGGC 61.039 63.158 0.00 0.00 40.90 6.13
5794 10718 2.047655 TTGAACAGGCTACCGGCG 60.048 61.111 0.00 0.00 42.94 6.46
5795 10719 2.874664 TTGAACAGGCTACCGGCGT 61.875 57.895 6.01 0.00 42.94 5.68
5809 10733 4.460683 GCGTGGCCACCGGTGATA 62.461 66.667 36.07 17.95 0.00 2.15
5810 10734 2.202878 CGTGGCCACCGGTGATAG 60.203 66.667 36.07 20.06 0.00 2.08
5811 10735 2.189521 GTGGCCACCGGTGATAGG 59.810 66.667 36.07 20.27 0.00 2.57
5812 10736 3.087253 TGGCCACCGGTGATAGGG 61.087 66.667 36.07 19.86 0.00 3.53
5813 10737 4.564110 GGCCACCGGTGATAGGGC 62.564 72.222 36.07 28.25 43.86 5.19
5814 10738 3.792736 GCCACCGGTGATAGGGCA 61.793 66.667 36.07 0.00 44.01 5.36
5815 10739 2.505982 CCACCGGTGATAGGGCAG 59.494 66.667 36.07 12.56 0.00 4.85
5816 10740 2.203070 CACCGGTGATAGGGCAGC 60.203 66.667 31.31 0.00 0.00 5.25
5817 10741 2.687200 ACCGGTGATAGGGCAGCA 60.687 61.111 6.12 0.00 36.11 4.41
5818 10742 2.109799 CCGGTGATAGGGCAGCAG 59.890 66.667 0.00 0.00 36.11 4.24
5819 10743 2.590007 CGGTGATAGGGCAGCAGC 60.590 66.667 0.00 0.00 37.69 5.25
5829 10753 3.286751 GCAGCAGCCACCGTCAAA 61.287 61.111 0.00 0.00 33.58 2.69
5830 10754 2.639286 CAGCAGCCACCGTCAAAC 59.361 61.111 0.00 0.00 0.00 2.93
5831 10755 1.893808 CAGCAGCCACCGTCAAACT 60.894 57.895 0.00 0.00 0.00 2.66
5832 10756 1.893808 AGCAGCCACCGTCAAACTG 60.894 57.895 0.00 0.00 0.00 3.16
5833 10757 2.639286 CAGCCACCGTCAAACTGC 59.361 61.111 0.00 0.00 0.00 4.40
5834 10758 2.594592 AGCCACCGTCAAACTGCC 60.595 61.111 0.00 0.00 0.00 4.85
5835 10759 4.025401 GCCACCGTCAAACTGCCG 62.025 66.667 0.00 0.00 0.00 5.69
5836 10760 2.590575 CCACCGTCAAACTGCCGT 60.591 61.111 0.00 0.00 0.00 5.68
5837 10761 2.184167 CCACCGTCAAACTGCCGTT 61.184 57.895 0.00 0.00 34.03 4.44
5838 10762 1.720694 CCACCGTCAAACTGCCGTTT 61.721 55.000 0.00 0.00 43.85 3.60
5844 10768 3.532501 AAACTGCCGTTTGTGGGG 58.467 55.556 5.37 0.00 41.58 4.96
5845 10769 1.380650 AAACTGCCGTTTGTGGGGT 60.381 52.632 5.37 0.00 41.58 4.95
5846 10770 1.388837 AAACTGCCGTTTGTGGGGTC 61.389 55.000 5.37 0.00 41.58 4.46
5847 10771 2.113139 CTGCCGTTTGTGGGGTCT 59.887 61.111 0.00 0.00 0.00 3.85
5848 10772 1.373435 CTGCCGTTTGTGGGGTCTA 59.627 57.895 0.00 0.00 0.00 2.59
5849 10773 0.250553 CTGCCGTTTGTGGGGTCTAA 60.251 55.000 0.00 0.00 0.00 2.10
5850 10774 0.535553 TGCCGTTTGTGGGGTCTAAC 60.536 55.000 0.00 0.00 0.00 2.34
5851 10775 1.571215 GCCGTTTGTGGGGTCTAACG 61.571 60.000 0.00 0.00 42.55 3.18
5852 10776 0.033781 CCGTTTGTGGGGTCTAACGA 59.966 55.000 12.82 0.00 44.38 3.85
5853 10777 1.142474 CGTTTGTGGGGTCTAACGAC 58.858 55.000 0.00 0.00 44.38 4.34
5862 10786 1.435105 GTCTAACGACCCTACCGCC 59.565 63.158 0.00 0.00 33.98 6.13
5863 10787 1.001020 TCTAACGACCCTACCGCCA 60.001 57.895 0.00 0.00 0.00 5.69
5864 10788 0.611618 TCTAACGACCCTACCGCCAA 60.612 55.000 0.00 0.00 0.00 4.52
5865 10789 0.179119 CTAACGACCCTACCGCCAAG 60.179 60.000 0.00 0.00 0.00 3.61
5867 10791 4.832608 CGACCCTACCGCCAAGGC 62.833 72.222 0.00 0.00 46.52 4.35
5868 10792 3.400054 GACCCTACCGCCAAGGCT 61.400 66.667 9.73 0.00 46.52 4.58
5869 10793 2.933834 ACCCTACCGCCAAGGCTT 60.934 61.111 9.73 0.00 46.52 4.35
5870 10794 1.614226 ACCCTACCGCCAAGGCTTA 60.614 57.895 9.73 0.00 46.52 3.09
5871 10795 1.153229 CCCTACCGCCAAGGCTTAC 60.153 63.158 9.73 0.00 46.52 2.34
5872 10796 1.153229 CCTACCGCCAAGGCTTACC 60.153 63.158 9.73 0.00 46.52 2.85
5873 10797 1.520787 CTACCGCCAAGGCTTACCG 60.521 63.158 9.73 5.56 46.52 4.02
5874 10798 3.668980 TACCGCCAAGGCTTACCGC 62.669 63.158 9.73 0.97 46.52 5.68
5896 10820 4.462280 GGGGGCGTCGGTAAGGTG 62.462 72.222 0.00 0.00 0.00 4.00
5897 10821 3.698820 GGGGCGTCGGTAAGGTGT 61.699 66.667 0.00 0.00 0.00 4.16
5898 10822 2.433664 GGGCGTCGGTAAGGTGTG 60.434 66.667 0.00 0.00 0.00 3.82
5899 10823 2.433664 GGCGTCGGTAAGGTGTGG 60.434 66.667 0.00 0.00 0.00 4.17
5900 10824 3.116531 GCGTCGGTAAGGTGTGGC 61.117 66.667 0.00 0.00 0.00 5.01
5901 10825 2.807895 CGTCGGTAAGGTGTGGCG 60.808 66.667 0.00 0.00 0.00 5.69
5902 10826 2.341176 GTCGGTAAGGTGTGGCGT 59.659 61.111 0.00 0.00 0.00 5.68
5903 10827 2.025418 GTCGGTAAGGTGTGGCGTG 61.025 63.158 0.00 0.00 0.00 5.34
5904 10828 3.419759 CGGTAAGGTGTGGCGTGC 61.420 66.667 0.00 0.00 0.00 5.34
5905 10829 3.053896 GGTAAGGTGTGGCGTGCC 61.054 66.667 3.30 3.30 0.00 5.01
5906 10830 2.281208 GTAAGGTGTGGCGTGCCA 60.281 61.111 10.06 10.06 45.02 4.92
5922 10846 4.731612 CAGCGCTGGAGCACGAGT 62.732 66.667 29.88 0.00 42.21 4.18
5923 10847 3.996124 AGCGCTGGAGCACGAGTT 61.996 61.111 10.39 0.00 42.21 3.01
5924 10848 3.482783 GCGCTGGAGCACGAGTTC 61.483 66.667 0.00 0.00 42.21 3.01
5925 10849 2.259818 CGCTGGAGCACGAGTTCT 59.740 61.111 0.00 0.00 42.21 3.01
5926 10850 2.091112 CGCTGGAGCACGAGTTCTG 61.091 63.158 0.00 0.00 42.21 3.02
5927 10851 1.005630 GCTGGAGCACGAGTTCTGT 60.006 57.895 0.00 0.00 41.59 3.41
5928 10852 1.287730 GCTGGAGCACGAGTTCTGTG 61.288 60.000 0.00 0.00 41.59 3.66
5929 10853 0.315251 CTGGAGCACGAGTTCTGTGA 59.685 55.000 0.00 0.00 39.73 3.58
5930 10854 0.032130 TGGAGCACGAGTTCTGTGAC 59.968 55.000 0.00 0.00 39.73 3.67
5931 10855 0.032130 GGAGCACGAGTTCTGTGACA 59.968 55.000 0.00 0.00 39.73 3.58
5932 10856 1.413382 GAGCACGAGTTCTGTGACAG 58.587 55.000 6.18 6.18 39.73 3.51
5933 10857 1.001268 GAGCACGAGTTCTGTGACAGA 60.001 52.381 11.93 11.93 39.73 3.41
5934 10858 1.409064 AGCACGAGTTCTGTGACAGAA 59.591 47.619 23.02 23.02 46.50 3.02
5942 10866 2.708216 TCTGTGACAGAAAACTGGCA 57.292 45.000 13.74 1.38 40.56 4.92
5943 10867 2.564771 TCTGTGACAGAAAACTGGCAG 58.435 47.619 13.74 14.16 43.91 4.85
5944 10868 2.170397 TCTGTGACAGAAAACTGGCAGA 59.830 45.455 23.66 4.46 43.91 4.26
5945 10869 3.144506 CTGTGACAGAAAACTGGCAGAT 58.855 45.455 23.66 6.45 43.91 2.90
5946 10870 3.554934 TGTGACAGAAAACTGGCAGATT 58.445 40.909 23.66 13.62 43.91 2.40
5947 10871 3.953612 TGTGACAGAAAACTGGCAGATTT 59.046 39.130 23.66 22.09 43.91 2.17
5948 10872 4.202040 TGTGACAGAAAACTGGCAGATTTG 60.202 41.667 24.87 15.67 43.91 2.32
5949 10873 3.953612 TGACAGAAAACTGGCAGATTTGT 59.046 39.130 24.87 18.94 37.46 2.83
5950 10874 4.202040 TGACAGAAAACTGGCAGATTTGTG 60.202 41.667 31.82 31.82 37.46 3.33
5951 10875 3.054878 CAGAAAACTGGCAGATTTGTGC 58.945 45.455 26.33 14.26 43.19 4.57
5952 10876 2.053627 GAAAACTGGCAGATTTGTGCG 58.946 47.619 24.87 0.00 45.00 5.34
5953 10877 0.314935 AAACTGGCAGATTTGTGCGG 59.685 50.000 23.66 0.00 45.00 5.69
5954 10878 0.823356 AACTGGCAGATTTGTGCGGT 60.823 50.000 23.66 0.00 45.00 5.68
5955 10879 0.036164 ACTGGCAGATTTGTGCGGTA 59.964 50.000 23.66 0.00 45.00 4.02
5956 10880 0.729116 CTGGCAGATTTGTGCGGTAG 59.271 55.000 9.42 0.00 45.00 3.18
5957 10881 0.676466 TGGCAGATTTGTGCGGTAGG 60.676 55.000 0.00 0.00 45.00 3.18
5958 10882 0.676782 GGCAGATTTGTGCGGTAGGT 60.677 55.000 0.00 0.00 45.00 3.08
5959 10883 1.165270 GCAGATTTGTGCGGTAGGTT 58.835 50.000 0.00 0.00 32.74 3.50
5960 10884 1.539827 GCAGATTTGTGCGGTAGGTTT 59.460 47.619 0.00 0.00 32.74 3.27
5961 10885 2.745281 GCAGATTTGTGCGGTAGGTTTA 59.255 45.455 0.00 0.00 32.74 2.01
5962 10886 3.425758 GCAGATTTGTGCGGTAGGTTTAC 60.426 47.826 0.00 0.00 32.74 2.01
5963 10887 3.749088 CAGATTTGTGCGGTAGGTTTACA 59.251 43.478 0.00 0.00 0.00 2.41
5964 10888 4.394920 CAGATTTGTGCGGTAGGTTTACAT 59.605 41.667 0.00 0.00 0.00 2.29
5965 10889 5.583061 CAGATTTGTGCGGTAGGTTTACATA 59.417 40.000 0.00 0.00 0.00 2.29
5966 10890 5.583457 AGATTTGTGCGGTAGGTTTACATAC 59.417 40.000 0.00 0.00 32.84 2.39
5967 10891 3.249986 TGTGCGGTAGGTTTACATACC 57.750 47.619 12.48 12.48 46.55 2.73
5974 10898 3.982475 GTAGGTTTACATACCCTACCGC 58.018 50.000 0.00 0.00 43.19 5.68
5975 10899 1.764723 AGGTTTACATACCCTACCGCC 59.235 52.381 0.00 0.00 39.08 6.13
5976 10900 1.485895 GGTTTACATACCCTACCGCCA 59.514 52.381 0.00 0.00 31.71 5.69
5977 10901 2.554142 GTTTACATACCCTACCGCCAC 58.446 52.381 0.00 0.00 0.00 5.01
5978 10902 1.863325 TTACATACCCTACCGCCACA 58.137 50.000 0.00 0.00 0.00 4.17
5979 10903 1.113788 TACATACCCTACCGCCACAC 58.886 55.000 0.00 0.00 0.00 3.82
5980 10904 1.145377 CATACCCTACCGCCACACC 59.855 63.158 0.00 0.00 0.00 4.16
5981 10905 2.068213 ATACCCTACCGCCACACCC 61.068 63.158 0.00 0.00 0.00 4.61
5984 10908 4.446413 CCTACCGCCACACCCGAC 62.446 72.222 0.00 0.00 0.00 4.79
5985 10909 4.789075 CTACCGCCACACCCGACG 62.789 72.222 0.00 0.00 0.00 5.12
6002 10926 4.814294 GGCGGTAGGGCGTGACTG 62.814 72.222 0.00 0.00 0.00 3.51
6003 10927 4.814294 GCGGTAGGGCGTGACTGG 62.814 72.222 0.00 0.00 0.00 4.00
6004 10928 4.814294 CGGTAGGGCGTGACTGGC 62.814 72.222 0.00 0.00 0.00 4.85
6005 10929 4.814294 GGTAGGGCGTGACTGGCG 62.814 72.222 0.00 0.00 34.76 5.69
6021 10945 2.483745 CGCAGCCTGCATTCTGTG 59.516 61.111 18.21 13.44 45.36 3.66
6022 10946 2.036571 CGCAGCCTGCATTCTGTGA 61.037 57.895 18.21 0.00 45.36 3.58
6023 10947 1.505353 GCAGCCTGCATTCTGTGAC 59.495 57.895 12.82 0.00 44.26 3.67
6024 10948 0.959372 GCAGCCTGCATTCTGTGACT 60.959 55.000 12.82 0.00 44.26 3.41
6025 10949 0.803117 CAGCCTGCATTCTGTGACTG 59.197 55.000 7.07 0.00 0.00 3.51
6026 10950 0.689055 AGCCTGCATTCTGTGACTGA 59.311 50.000 0.00 0.00 0.00 3.41
6027 10951 1.072806 AGCCTGCATTCTGTGACTGAA 59.927 47.619 7.36 7.36 0.00 3.02
6028 10952 1.881973 GCCTGCATTCTGTGACTGAAA 59.118 47.619 8.95 0.00 0.00 2.69
6029 10953 2.294233 GCCTGCATTCTGTGACTGAAAA 59.706 45.455 8.95 0.00 0.00 2.29
6030 10954 3.243501 GCCTGCATTCTGTGACTGAAAAA 60.244 43.478 8.95 0.00 0.00 1.94
6031 10955 4.543692 CCTGCATTCTGTGACTGAAAAAG 58.456 43.478 8.95 6.98 0.00 2.27
6032 10956 4.543692 CTGCATTCTGTGACTGAAAAAGG 58.456 43.478 8.95 1.66 0.00 3.11
6033 10957 3.318839 TGCATTCTGTGACTGAAAAAGGG 59.681 43.478 8.95 0.00 0.00 3.95
6034 10958 3.305608 GCATTCTGTGACTGAAAAAGGGG 60.306 47.826 8.95 0.00 0.00 4.79
6035 10959 3.943671 TTCTGTGACTGAAAAAGGGGA 57.056 42.857 2.25 0.00 0.00 4.81
6036 10960 3.943671 TCTGTGACTGAAAAAGGGGAA 57.056 42.857 0.00 0.00 0.00 3.97
6037 10961 3.551846 TCTGTGACTGAAAAAGGGGAAC 58.448 45.455 0.00 0.00 0.00 3.62
6038 10962 2.290641 CTGTGACTGAAAAAGGGGAACG 59.709 50.000 0.00 0.00 0.00 3.95
6039 10963 1.001706 GTGACTGAAAAAGGGGAACGC 60.002 52.381 0.00 0.00 43.76 4.84
6040 10964 0.596577 GACTGAAAAAGGGGAACGCC 59.403 55.000 0.00 0.00 44.92 5.68
6041 10965 1.170290 ACTGAAAAAGGGGAACGCCG 61.170 55.000 2.41 0.00 44.92 6.46
6042 10966 1.152922 TGAAAAAGGGGAACGCCGT 60.153 52.632 2.41 0.00 44.92 5.68
6043 10967 1.284715 GAAAAAGGGGAACGCCGTG 59.715 57.895 0.00 0.00 44.92 4.94
6044 10968 2.742710 GAAAAAGGGGAACGCCGTGC 62.743 60.000 0.00 0.00 44.92 5.34
6055 10979 3.406559 GCCGTGCGGTAGGATTTC 58.593 61.111 12.46 0.00 37.65 2.17
6056 10980 1.448893 GCCGTGCGGTAGGATTTCA 60.449 57.895 12.46 0.00 37.65 2.69
6057 10981 1.702491 GCCGTGCGGTAGGATTTCAC 61.702 60.000 12.46 0.00 37.65 3.18
6058 10982 0.390603 CCGTGCGGTAGGATTTCACA 60.391 55.000 1.93 0.00 0.00 3.58
6059 10983 1.651987 CGTGCGGTAGGATTTCACAT 58.348 50.000 0.00 0.00 0.00 3.21
6060 10984 1.593006 CGTGCGGTAGGATTTCACATC 59.407 52.381 0.00 0.00 0.00 3.06
6061 10985 1.940613 GTGCGGTAGGATTTCACATCC 59.059 52.381 0.00 0.00 38.47 3.51
6063 10987 3.035363 TGCGGTAGGATTTCACATCCTA 58.965 45.455 6.51 6.51 46.11 2.94
6067 10991 2.622064 AGGATTTCACATCCTACCGC 57.378 50.000 1.25 0.00 46.11 5.68
6068 10992 1.141053 AGGATTTCACATCCTACCGCC 59.859 52.381 1.25 0.00 46.11 6.13
6069 10993 1.134220 GGATTTCACATCCTACCGCCA 60.134 52.381 0.00 0.00 35.36 5.69
6070 10994 2.487265 GGATTTCACATCCTACCGCCAT 60.487 50.000 0.00 0.00 35.36 4.40
6071 10995 2.036958 TTTCACATCCTACCGCCATG 57.963 50.000 0.00 0.00 0.00 3.66
6072 10996 0.180171 TTCACATCCTACCGCCATGG 59.820 55.000 7.63 7.63 46.41 3.66
6081 11005 2.514592 CCGCCATGGTGCCTAGTG 60.515 66.667 20.39 0.91 0.00 2.74
6082 11006 2.514592 CGCCATGGTGCCTAGTGG 60.515 66.667 13.39 0.00 34.84 4.00
6083 11007 2.677228 GCCATGGTGCCTAGTGGT 59.323 61.111 14.67 0.00 34.23 4.16
6084 11008 1.912220 GCCATGGTGCCTAGTGGTA 59.088 57.895 14.67 0.00 34.23 3.25
6085 11009 0.179045 GCCATGGTGCCTAGTGGTAG 60.179 60.000 14.67 0.00 34.23 3.18
6087 11011 0.469917 CATGGTGCCTAGTGGTAGGG 59.530 60.000 0.72 0.00 45.71 3.53
6088 11012 0.044244 ATGGTGCCTAGTGGTAGGGT 59.956 55.000 0.72 0.00 45.71 4.34
6089 11013 0.616679 TGGTGCCTAGTGGTAGGGTC 60.617 60.000 0.72 0.00 45.71 4.46
6090 11014 1.335882 GGTGCCTAGTGGTAGGGTCC 61.336 65.000 0.72 0.00 45.71 4.46
6091 11015 0.325390 GTGCCTAGTGGTAGGGTCCT 60.325 60.000 0.72 0.00 45.71 3.85
6092 11016 0.032416 TGCCTAGTGGTAGGGTCCTC 60.032 60.000 0.00 0.00 45.71 3.71
6093 11017 0.032416 GCCTAGTGGTAGGGTCCTCA 60.032 60.000 0.00 0.00 45.71 3.86
6094 11018 1.777941 CCTAGTGGTAGGGTCCTCAC 58.222 60.000 0.00 0.00 42.25 3.51
6095 11019 1.688627 CCTAGTGGTAGGGTCCTCACC 60.689 61.905 5.69 5.69 42.25 4.02
6132 11056 8.373048 ACAAGAACGTGACTATTTCAATTACA 57.627 30.769 0.00 0.00 35.39 2.41
6133 11057 8.832521 ACAAGAACGTGACTATTTCAATTACAA 58.167 29.630 0.00 0.00 35.39 2.41
6134 11058 9.103048 CAAGAACGTGACTATTTCAATTACAAC 57.897 33.333 0.00 0.00 35.39 3.32
6135 11059 8.603242 AGAACGTGACTATTTCAATTACAACT 57.397 30.769 0.00 0.00 35.39 3.16
6136 11060 9.701098 AGAACGTGACTATTTCAATTACAACTA 57.299 29.630 0.00 0.00 35.39 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 4.141914 TGCCCGTTTTTGTTTTGGATAAGT 60.142 37.500 0.00 0.00 0.00 2.24
44 46 1.363145 TATTTGCGTGGCGTACCTGC 61.363 55.000 0.00 0.00 38.19 4.85
82 84 3.515901 TGTTGCCTTTGTTGTACCCTTTT 59.484 39.130 0.00 0.00 0.00 2.27
86 88 2.223947 CCTTGTTGCCTTTGTTGTACCC 60.224 50.000 0.00 0.00 0.00 3.69
148 150 1.151679 TTTTGTCATCGCCACCCCA 59.848 52.632 0.00 0.00 0.00 4.96
157 159 5.444663 AAAGAGCCTTCAGTTTTGTCATC 57.555 39.130 0.00 0.00 0.00 2.92
181 183 2.935955 GGTGTGTCGGTTTCTGCG 59.064 61.111 0.00 0.00 0.00 5.18
206 208 0.730265 GTGCACGACAACTTCAACCA 59.270 50.000 0.00 0.00 0.00 3.67
235 237 8.829373 ATCAGATATTCCAGCCTTTTAAAACT 57.171 30.769 0.00 0.00 0.00 2.66
236 238 9.875691 AAATCAGATATTCCAGCCTTTTAAAAC 57.124 29.630 0.00 0.00 0.00 2.43
304 324 4.595781 TCCATATCGCCCAACTATAAGGTT 59.404 41.667 0.00 0.00 0.00 3.50
348 368 4.395854 CCACATAGATGTTGTAGCTGCAAA 59.604 41.667 19.29 9.92 39.39 3.68
349 369 3.940852 CCACATAGATGTTGTAGCTGCAA 59.059 43.478 13.67 13.67 39.39 4.08
459 505 2.156098 CTCTCTCCCTAGTATGCCGAC 58.844 57.143 0.00 0.00 0.00 4.79
468 514 2.424793 ACCCTCCTACTCTCTCCCTAG 58.575 57.143 0.00 0.00 0.00 3.02
492 1533 3.720949 ACCATGATCGCATTTTCCATG 57.279 42.857 0.00 0.00 35.61 3.66
509 1550 3.117701 TGTTCAAGGTTCTGATCCAACCA 60.118 43.478 20.50 3.28 45.20 3.67
519 1560 2.035449 TCGTCATCGTGTTCAAGGTTCT 59.965 45.455 0.00 0.00 38.33 3.01
527 1568 1.630148 CCTTCCTCGTCATCGTGTTC 58.370 55.000 0.00 0.00 38.33 3.18
538 1579 2.797156 CGATTGTAAGATGCCTTCCTCG 59.203 50.000 0.00 0.00 33.94 4.63
565 1606 3.451178 ACCTGAGCACGGAATACATACTT 59.549 43.478 0.00 0.00 0.00 2.24
566 1607 3.031736 ACCTGAGCACGGAATACATACT 58.968 45.455 0.00 0.00 0.00 2.12
568 1609 4.481368 AAACCTGAGCACGGAATACATA 57.519 40.909 0.00 0.00 0.00 2.29
571 1612 3.125316 CAGAAAACCTGAGCACGGAATAC 59.875 47.826 0.00 0.00 45.78 1.89
572 1613 3.007506 TCAGAAAACCTGAGCACGGAATA 59.992 43.478 0.00 0.00 46.38 1.75
575 1616 0.756294 TCAGAAAACCTGAGCACGGA 59.244 50.000 0.00 0.00 46.38 4.69
620 1851 6.314784 CCAATAAACACTTCCGCTTTTAGAG 58.685 40.000 0.00 0.00 0.00 2.43
621 1852 5.182380 CCCAATAAACACTTCCGCTTTTAGA 59.818 40.000 0.00 0.00 0.00 2.10
636 1867 6.162777 TCTGTTTTGCATAAGCCCAATAAAC 58.837 36.000 0.00 0.00 41.13 2.01
643 1874 3.988819 TGTTTCTGTTTTGCATAAGCCC 58.011 40.909 0.00 0.00 41.13 5.19
728 1963 2.545731 GCTAGCTAGCTGACAACCTTC 58.454 52.381 33.71 4.79 45.62 3.46
757 1992 0.737019 GCCACCCATGAACATTTGCG 60.737 55.000 0.00 0.00 0.00 4.85
789 2035 1.141665 GCAAATAAAGCCGCCCTGG 59.858 57.895 0.00 0.00 42.50 4.45
1406 2733 5.986135 CACGAACAGGGAAGGAGATTATTAG 59.014 44.000 0.00 0.00 0.00 1.73
1424 2751 3.122971 GCTAACCCGGCCACGAAC 61.123 66.667 2.24 0.00 44.60 3.95
1425 2752 4.745751 CGCTAACCCGGCCACGAA 62.746 66.667 2.24 0.00 44.60 3.85
1428 2755 2.229690 TTACTCGCTAACCCGGCCAC 62.230 60.000 2.24 0.00 0.00 5.01
1429 2756 1.952102 CTTACTCGCTAACCCGGCCA 61.952 60.000 2.24 0.00 0.00 5.36
1430 2757 1.227176 CTTACTCGCTAACCCGGCC 60.227 63.158 0.00 0.00 0.00 6.13
1431 2758 0.740737 TACTTACTCGCTAACCCGGC 59.259 55.000 0.00 0.00 0.00 6.13
1432 2759 3.722728 ATTACTTACTCGCTAACCCGG 57.277 47.619 0.00 0.00 0.00 5.73
1433 2760 5.684626 CACTAATTACTTACTCGCTAACCCG 59.315 44.000 0.00 0.00 0.00 5.28
1434 2761 5.461407 GCACTAATTACTTACTCGCTAACCC 59.539 44.000 0.00 0.00 0.00 4.11
1435 2762 5.461407 GGCACTAATTACTTACTCGCTAACC 59.539 44.000 0.00 0.00 0.00 2.85
1535 2862 8.895932 AAAGTAATTCAAAGTAATTAGCAGCG 57.104 30.769 0.00 0.00 33.19 5.18
1625 2959 5.745294 GGACGACGTGATTAAGTTAAGCATA 59.255 40.000 16.03 0.00 36.38 3.14
1856 3246 3.482383 AAAAATGGTGGCAGGGGC 58.518 55.556 0.00 0.00 40.13 5.80
1889 3279 8.857694 ATTTCGTCTCCTTCCTTGTAAAATAA 57.142 30.769 0.00 0.00 0.00 1.40
1897 3287 5.073311 TCTGTATTTCGTCTCCTTCCTTG 57.927 43.478 0.00 0.00 0.00 3.61
1915 3305 6.043411 GGCTCTGTACGAAATTATTCTCTGT 58.957 40.000 0.00 0.00 33.17 3.41
1919 3309 4.142004 ACGGGCTCTGTACGAAATTATTCT 60.142 41.667 0.00 0.00 33.17 2.40
1927 3317 0.892755 AATCACGGGCTCTGTACGAA 59.107 50.000 0.00 0.00 0.00 3.85
1928 3318 0.892755 AAATCACGGGCTCTGTACGA 59.107 50.000 0.00 0.00 0.00 3.43
1932 3322 1.347707 TCAAGAAATCACGGGCTCTGT 59.652 47.619 0.00 0.00 0.00 3.41
2006 3399 5.420409 AGACCTTAGGCTAACGAAATGAAG 58.580 41.667 2.04 0.00 0.00 3.02
2075 3468 4.397382 GTTAAATTCTCGCGGTACCAAAC 58.603 43.478 13.54 0.00 0.00 2.93
2079 3472 2.897436 AGGTTAAATTCTCGCGGTACC 58.103 47.619 6.13 0.16 0.00 3.34
2080 3473 4.934075 AAAGGTTAAATTCTCGCGGTAC 57.066 40.909 6.13 0.00 0.00 3.34
2123 3516 9.709495 CAGAGTAATCTAGGAACGTACTATACT 57.291 37.037 9.76 9.76 0.00 2.12
2124 3517 8.442384 GCAGAGTAATCTAGGAACGTACTATAC 58.558 40.741 0.00 0.00 0.00 1.47
2125 3518 8.373981 AGCAGAGTAATCTAGGAACGTACTATA 58.626 37.037 0.00 0.00 0.00 1.31
2126 3519 7.225725 AGCAGAGTAATCTAGGAACGTACTAT 58.774 38.462 0.00 0.00 0.00 2.12
2324 3718 3.315418 GGTCGATTTAGCCTCGTAATCC 58.685 50.000 0.00 0.00 37.40 3.01
2399 3793 2.432628 CCGTCAGCCCTTGTCGTC 60.433 66.667 0.00 0.00 36.75 4.20
2562 3989 3.396260 TCCCAACAGTAACACTAGCAC 57.604 47.619 0.00 0.00 0.00 4.40
2564 3991 5.959618 ATTTTCCCAACAGTAACACTAGC 57.040 39.130 0.00 0.00 0.00 3.42
2568 3995 6.368213 CGAGTTATTTTCCCAACAGTAACAC 58.632 40.000 0.00 0.00 0.00 3.32
2569 3996 5.470777 CCGAGTTATTTTCCCAACAGTAACA 59.529 40.000 0.00 0.00 0.00 2.41
2570 3997 5.702209 TCCGAGTTATTTTCCCAACAGTAAC 59.298 40.000 0.00 0.00 0.00 2.50
2571 3998 5.867330 TCCGAGTTATTTTCCCAACAGTAA 58.133 37.500 0.00 0.00 0.00 2.24
2599 4026 2.669569 CTGGAACGTGGTGGGCAG 60.670 66.667 0.00 0.00 0.00 4.85
2600 4027 3.469863 GACTGGAACGTGGTGGGCA 62.470 63.158 0.00 0.00 0.00 5.36
2625 4052 0.595095 AAGTACACGTGGGTCTCGAC 59.405 55.000 21.57 5.86 0.00 4.20
2654 4081 6.717084 CCCTACTCCCCATCATATTTTTCTTC 59.283 42.308 0.00 0.00 0.00 2.87
2663 4090 2.912956 GCATTCCCTACTCCCCATCATA 59.087 50.000 0.00 0.00 0.00 2.15
2670 4097 0.111253 CCATGGCATTCCCTACTCCC 59.889 60.000 0.00 0.00 0.00 4.30
2678 4105 5.362430 TGGACTATTTTTACCATGGCATTCC 59.638 40.000 13.04 5.57 0.00 3.01
2718 4146 4.940654 GGCAGATATCTAAATTCCCAGCTC 59.059 45.833 4.54 0.00 0.00 4.09
2768 4199 1.009335 CATGCCATTGTGGATCGCG 60.009 57.895 0.00 0.00 40.96 5.87
2802 4233 1.070914 GGACCAGATTCTCGGAATCCC 59.929 57.143 17.64 11.03 0.00 3.85
2834 4265 2.034939 ACGACACTGACACGGATTTACA 59.965 45.455 0.00 0.00 0.00 2.41
2836 4267 2.293955 TGACGACACTGACACGGATTTA 59.706 45.455 0.00 0.00 0.00 1.40
2852 4283 3.784338 ACGTTTTGGTAGTTCTTGACGA 58.216 40.909 0.00 0.00 33.86 4.20
2856 4287 3.207778 TGGGACGTTTTGGTAGTTCTTG 58.792 45.455 0.00 0.00 0.00 3.02
2881 4312 0.881796 GCCCTGTGGTACTTTTGCTC 59.118 55.000 0.00 0.00 0.00 4.26
2899 4330 0.038892 CAGAGTTGGTGTGGCATTGC 60.039 55.000 0.00 0.00 0.00 3.56
2900 4331 1.608055 TCAGAGTTGGTGTGGCATTG 58.392 50.000 0.00 0.00 0.00 2.82
2958 4389 3.181494 GCACATCACAGCTGATTATTGCA 60.181 43.478 23.35 0.00 34.65 4.08
2962 4393 3.882444 ACTGCACATCACAGCTGATTAT 58.118 40.909 23.35 7.55 38.79 1.28
2990 4424 1.338674 CCAATCAGTACGGAACCAGCA 60.339 52.381 0.00 0.00 0.00 4.41
2991 4425 1.338769 ACCAATCAGTACGGAACCAGC 60.339 52.381 0.00 0.00 0.00 4.85
2992 4426 2.762535 ACCAATCAGTACGGAACCAG 57.237 50.000 0.00 0.00 0.00 4.00
2993 4427 3.142951 CAAACCAATCAGTACGGAACCA 58.857 45.455 0.00 0.00 0.00 3.67
2995 4429 4.533222 CAACAAACCAATCAGTACGGAAC 58.467 43.478 0.00 0.00 0.00 3.62
2999 4433 3.304391 CCACCAACAAACCAATCAGTACG 60.304 47.826 0.00 0.00 0.00 3.67
3000 4434 3.552068 GCCACCAACAAACCAATCAGTAC 60.552 47.826 0.00 0.00 0.00 2.73
3001 4435 2.625790 GCCACCAACAAACCAATCAGTA 59.374 45.455 0.00 0.00 0.00 2.74
3002 4436 1.412343 GCCACCAACAAACCAATCAGT 59.588 47.619 0.00 0.00 0.00 3.41
3303 4742 1.297819 CTGCTTGTGTGTGTGTGCG 60.298 57.895 0.00 0.00 0.00 5.34
3309 4748 3.561310 AGTATGTGAACTGCTTGTGTGTG 59.439 43.478 0.00 0.00 0.00 3.82
3310 4749 3.808728 AGTATGTGAACTGCTTGTGTGT 58.191 40.909 0.00 0.00 0.00 3.72
3339 4778 3.621214 CGGTGATGGTATGGTGGAAGAAA 60.621 47.826 0.00 0.00 0.00 2.52
3340 4779 2.093181 CGGTGATGGTATGGTGGAAGAA 60.093 50.000 0.00 0.00 0.00 2.52
3342 4781 1.484653 TCGGTGATGGTATGGTGGAAG 59.515 52.381 0.00 0.00 0.00 3.46
3343 4782 1.208535 GTCGGTGATGGTATGGTGGAA 59.791 52.381 0.00 0.00 0.00 3.53
3344 4783 0.828022 GTCGGTGATGGTATGGTGGA 59.172 55.000 0.00 0.00 0.00 4.02
3345 4784 0.529773 CGTCGGTGATGGTATGGTGG 60.530 60.000 0.00 0.00 0.00 4.61
3346 4785 0.458260 TCGTCGGTGATGGTATGGTG 59.542 55.000 0.00 0.00 0.00 4.17
3347 4786 1.340248 GATCGTCGGTGATGGTATGGT 59.660 52.381 0.00 0.00 0.00 3.55
3348 4787 1.666023 CGATCGTCGGTGATGGTATGG 60.666 57.143 7.03 0.00 36.00 2.74
3349 4788 1.265905 TCGATCGTCGGTGATGGTATG 59.734 52.381 15.94 0.00 40.88 2.39
3350 4789 1.601166 TCGATCGTCGGTGATGGTAT 58.399 50.000 15.94 0.00 40.88 2.73
3351 4790 1.534163 GATCGATCGTCGGTGATGGTA 59.466 52.381 15.94 0.00 40.88 3.25
3352 4791 0.311165 GATCGATCGTCGGTGATGGT 59.689 55.000 15.94 0.00 40.88 3.55
3356 4795 0.377203 CAGTGATCGATCGTCGGTGA 59.623 55.000 20.03 0.00 40.88 4.02
3389 4832 7.042321 CGGTAAACTGTTATTGACTGTCAAGAA 60.042 37.037 25.40 23.94 40.05 2.52
3391 4834 6.202188 ACGGTAAACTGTTATTGACTGTCAAG 59.798 38.462 25.40 15.31 39.22 3.02
3392 4835 6.050432 ACGGTAAACTGTTATTGACTGTCAA 58.950 36.000 23.94 23.94 39.22 3.18
3393 4836 5.603596 ACGGTAAACTGTTATTGACTGTCA 58.396 37.500 6.36 6.36 39.22 3.58
3394 4837 7.823149 ATACGGTAAACTGTTATTGACTGTC 57.177 36.000 0.00 0.00 39.22 3.51
3395 4838 8.611654 AAATACGGTAAACTGTTATTGACTGT 57.388 30.769 0.00 11.51 41.56 3.55
3399 4842 9.090692 GCTCTAAATACGGTAAACTGTTATTGA 57.909 33.333 0.00 0.00 36.70 2.57
3402 4845 7.789026 AGGCTCTAAATACGGTAAACTGTTAT 58.211 34.615 0.00 0.00 36.70 1.89
3404 4847 6.046290 AGGCTCTAAATACGGTAAACTGTT 57.954 37.500 0.00 0.00 36.70 3.16
3412 4855 4.341520 CACCTCTAAGGCTCTAAATACGGT 59.658 45.833 0.00 0.00 39.63 4.83
3415 4858 7.533289 AGATCACCTCTAAGGCTCTAAATAC 57.467 40.000 0.00 0.00 39.63 1.89
3419 4862 5.074115 GCTAGATCACCTCTAAGGCTCTAA 58.926 45.833 0.00 0.00 39.63 2.10
3420 4863 4.658063 GCTAGATCACCTCTAAGGCTCTA 58.342 47.826 0.00 0.00 39.63 2.43
3421 4864 3.496331 GCTAGATCACCTCTAAGGCTCT 58.504 50.000 0.00 0.00 39.63 4.09
3422 4865 2.227865 CGCTAGATCACCTCTAAGGCTC 59.772 54.545 0.00 0.00 39.63 4.70
3423 4866 2.235016 CGCTAGATCACCTCTAAGGCT 58.765 52.381 0.00 0.00 39.63 4.58
3424 4867 1.271102 CCGCTAGATCACCTCTAAGGC 59.729 57.143 0.00 0.00 39.63 4.35
3425 4868 2.294791 CACCGCTAGATCACCTCTAAGG 59.705 54.545 0.00 0.00 42.49 2.69
3426 4869 2.294791 CCACCGCTAGATCACCTCTAAG 59.705 54.545 0.00 0.00 36.02 2.18
3433 4876 2.973694 TTTACCCACCGCTAGATCAC 57.026 50.000 0.00 0.00 0.00 3.06
3445 4888 3.906846 ACAAAGCATCCCATTTTTACCCA 59.093 39.130 0.00 0.00 0.00 4.51
3548 5003 4.687215 ATGCCTGCGTCACTGCGT 62.687 61.111 0.00 0.00 37.81 5.24
3549 5004 4.156622 CATGCCTGCGTCACTGCG 62.157 66.667 0.00 0.00 37.81 5.18
3550 5005 3.807538 CCATGCCTGCGTCACTGC 61.808 66.667 0.00 0.00 0.00 4.40
3551 5006 3.129502 CCCATGCCTGCGTCACTG 61.130 66.667 0.00 0.00 0.00 3.66
3552 5007 3.321648 TCCCATGCCTGCGTCACT 61.322 61.111 0.00 0.00 0.00 3.41
3553 5008 3.127533 GTCCCATGCCTGCGTCAC 61.128 66.667 0.00 0.00 0.00 3.67
3554 5009 4.758251 CGTCCCATGCCTGCGTCA 62.758 66.667 0.00 0.00 0.00 4.35
3590 5045 0.589479 TGCGATTCAATGCGAATGCG 60.589 50.000 0.00 0.00 44.65 4.73
3614 5069 4.026052 CAATTTGCTCACCTAATTCCCCT 58.974 43.478 0.00 0.00 28.51 4.79
3615 5070 4.023291 TCAATTTGCTCACCTAATTCCCC 58.977 43.478 0.00 0.00 28.51 4.81
3645 5100 1.270358 ACTCTGTTTCTTGGACGAGCC 60.270 52.381 0.00 0.00 37.10 4.70
3656 5111 3.803555 CACGAAGCATCAACTCTGTTTC 58.196 45.455 0.00 0.00 32.45 2.78
3664 5119 1.154413 CCACGCACGAAGCATCAAC 60.154 57.895 0.00 0.00 46.13 3.18
3856 5314 3.495629 GGCAGCAATGATGATAGTGAGGA 60.496 47.826 1.35 0.00 0.00 3.71
3857 5315 2.812591 GGCAGCAATGATGATAGTGAGG 59.187 50.000 1.35 0.00 0.00 3.86
3858 5316 2.812591 GGGCAGCAATGATGATAGTGAG 59.187 50.000 1.35 0.00 0.00 3.51
3864 5322 1.315690 CTTCGGGCAGCAATGATGAT 58.684 50.000 1.35 0.00 0.00 2.45
3903 5361 0.324738 AGCATCAGAGGAAGGGACGA 60.325 55.000 0.00 0.00 0.00 4.20
3911 5369 3.102204 TCAGAATCACAGCATCAGAGGA 58.898 45.455 0.00 0.00 0.00 3.71
3952 5410 4.202151 GGTGCCACAAGAAAAGAGAACATT 60.202 41.667 0.00 0.00 0.00 2.71
3955 5413 2.687935 TGGTGCCACAAGAAAAGAGAAC 59.312 45.455 0.00 0.00 0.00 3.01
4149 5614 1.742880 CCTGATCCGTGTGCAGTGG 60.743 63.158 0.00 0.00 0.00 4.00
4160 5625 2.124411 TGCCCCTACTAAACCTGATCC 58.876 52.381 0.00 0.00 0.00 3.36
4317 5785 2.560861 CCCACACGTTGCATTCCG 59.439 61.111 0.00 0.00 0.00 4.30
4413 5887 0.673985 GTGGAGTTTTTCCCTGTGCC 59.326 55.000 0.00 0.00 46.19 5.01
4436 5912 1.515521 CGCAACAGGGGAAAGGTGTC 61.516 60.000 0.00 0.00 0.00 3.67
4517 5997 4.200851 CGCATGCGACGTGCTCAG 62.201 66.667 35.82 0.04 46.63 3.35
4534 6021 1.486211 TCAGTAGAAGCTACCAGGCC 58.514 55.000 0.00 0.00 0.00 5.19
4539 6026 4.373348 AACACGATCAGTAGAAGCTACC 57.627 45.455 0.00 0.00 0.00 3.18
4607 6102 6.286240 TGTCATCTACTCTTTGTACAGCAT 57.714 37.500 0.00 0.00 0.00 3.79
4832 6340 0.168128 ACACGGATAAAAGCTTGCGC 59.832 50.000 0.00 0.00 0.00 6.09
4833 6341 1.465689 CCACACGGATAAAAGCTTGCG 60.466 52.381 0.00 0.00 0.00 4.85
4908 6478 6.036953 TGCCAACAAAAACAGAATCAAATCAC 59.963 34.615 0.00 0.00 0.00 3.06
5079 6650 0.447011 CTCTGCTGCTGCTGCTTAAC 59.553 55.000 27.67 3.96 40.48 2.01
5292 6903 3.557595 GCTGTTTATTGGAGTGAGATCCG 59.442 47.826 0.00 0.00 42.77 4.18
5293 6904 4.517285 TGCTGTTTATTGGAGTGAGATCC 58.483 43.478 0.00 0.00 40.03 3.36
5294 6905 6.500684 TTTGCTGTTTATTGGAGTGAGATC 57.499 37.500 0.00 0.00 0.00 2.75
5295 6906 5.105997 GCTTTGCTGTTTATTGGAGTGAGAT 60.106 40.000 0.00 0.00 0.00 2.75
5425 7049 4.712476 ACTGACATAATCCCATCTGCTTC 58.288 43.478 0.00 0.00 0.00 3.86
5431 7059 4.212214 GCGAAAGACTGACATAATCCCATC 59.788 45.833 0.00 0.00 0.00 3.51
5444 7072 0.734253 AGTGCTAGCGCGAAAGACTG 60.734 55.000 21.89 0.00 39.65 3.51
5446 7074 1.009389 ACAGTGCTAGCGCGAAAGAC 61.009 55.000 21.89 6.81 39.65 3.01
5447 7075 0.524414 TACAGTGCTAGCGCGAAAGA 59.476 50.000 21.89 5.11 39.65 2.52
5452 7084 1.781429 CATTAGTACAGTGCTAGCGCG 59.219 52.381 21.89 18.20 39.65 6.86
5463 7096 2.583868 CGCGGCGCCATTAGTACA 60.584 61.111 28.98 0.00 0.00 2.90
5488 10400 3.050275 GCCAAGCCGTGTCTGGTC 61.050 66.667 0.00 0.00 0.00 4.02
5639 10562 2.644992 CTGTTTGGCGTGGGCTTC 59.355 61.111 0.00 0.00 39.81 3.86
5640 10563 3.605664 GCTGTTTGGCGTGGGCTT 61.606 61.111 0.00 0.00 39.81 4.35
5659 10582 1.001860 ACATGAAATTTTGCCACCCGG 59.998 47.619 0.00 0.00 0.00 5.73
5662 10585 5.505489 GGTCAAAACATGAAATTTTGCCACC 60.505 40.000 18.11 15.12 43.62 4.61
5664 10587 4.578105 GGGTCAAAACATGAAATTTTGCCA 59.422 37.500 21.18 6.58 43.62 4.92
5676 10599 4.966168 AGTAACCCAAAAGGGTCAAAACAT 59.034 37.500 6.67 0.00 42.06 2.71
5683 10606 5.010314 CCTGTTAAAGTAACCCAAAAGGGTC 59.990 44.000 6.67 0.00 42.06 4.46
5692 10615 5.183969 GGTCAGATCCTGTTAAAGTAACCC 58.816 45.833 0.00 0.00 37.88 4.11
5693 10616 5.183969 GGGTCAGATCCTGTTAAAGTAACC 58.816 45.833 0.00 0.00 37.88 2.85
5694 10617 5.183969 GGGGTCAGATCCTGTTAAAGTAAC 58.816 45.833 0.00 0.00 39.11 2.50
5695 10618 4.081309 CGGGGTCAGATCCTGTTAAAGTAA 60.081 45.833 0.00 0.00 32.61 2.24
5696 10619 3.449737 CGGGGTCAGATCCTGTTAAAGTA 59.550 47.826 0.00 0.00 32.61 2.24
5697 10620 2.236395 CGGGGTCAGATCCTGTTAAAGT 59.764 50.000 0.00 0.00 32.61 2.66
5698 10621 2.236395 ACGGGGTCAGATCCTGTTAAAG 59.764 50.000 8.60 0.00 40.76 1.85
5699 10622 2.235402 GACGGGGTCAGATCCTGTTAAA 59.765 50.000 15.97 0.00 43.40 1.52
5700 10623 1.829222 GACGGGGTCAGATCCTGTTAA 59.171 52.381 15.97 0.00 43.40 2.01
5702 10625 1.265454 GGACGGGGTCAGATCCTGTT 61.265 60.000 15.97 0.00 43.40 3.16
5703 10626 1.686110 GGACGGGGTCAGATCCTGT 60.686 63.158 14.75 14.75 45.81 4.00
5720 10643 5.182001 AGGTCAGATCTTGAAATGTTTTCGG 59.818 40.000 0.00 0.00 37.61 4.30
5721 10644 6.246420 AGGTCAGATCTTGAAATGTTTTCG 57.754 37.500 0.00 0.00 37.61 3.46
5725 10648 7.288621 AGGAAAAAGGTCAGATCTTGAAATGTT 59.711 33.333 0.00 0.00 37.61 2.71
5727 10650 7.224522 AGGAAAAAGGTCAGATCTTGAAATG 57.775 36.000 0.00 0.00 37.61 2.32
5733 10656 4.833390 CGGTAGGAAAAAGGTCAGATCTT 58.167 43.478 0.00 0.00 0.00 2.40
5734 10657 3.369576 GCGGTAGGAAAAAGGTCAGATCT 60.370 47.826 0.00 0.00 0.00 2.75
5748 10672 1.307517 ATTTCCCCTGGCGGTAGGA 60.308 57.895 2.18 0.00 40.42 2.94
5763 10687 1.202952 TGTTCAACCCTACCGCCATTT 60.203 47.619 0.00 0.00 0.00 2.32
5764 10688 0.402504 TGTTCAACCCTACCGCCATT 59.597 50.000 0.00 0.00 0.00 3.16
5765 10689 0.035439 CTGTTCAACCCTACCGCCAT 60.035 55.000 0.00 0.00 0.00 4.40
5776 10700 2.388232 CGCCGGTAGCCTGTTCAAC 61.388 63.158 1.90 0.00 38.78 3.18
5780 10704 4.388499 CCACGCCGGTAGCCTGTT 62.388 66.667 1.90 0.00 38.78 3.16
5792 10716 4.460683 TATCACCGGTGGCCACGC 62.461 66.667 33.40 20.22 0.00 5.34
5793 10717 2.202878 CTATCACCGGTGGCCACG 60.203 66.667 33.40 22.59 0.00 4.94
5794 10718 2.189521 CCTATCACCGGTGGCCAC 59.810 66.667 33.40 28.57 0.00 5.01
5795 10719 3.087253 CCCTATCACCGGTGGCCA 61.087 66.667 33.40 16.07 0.00 5.36
5796 10720 4.564110 GCCCTATCACCGGTGGCC 62.564 72.222 33.40 4.04 36.07 5.36
5797 10721 3.757248 CTGCCCTATCACCGGTGGC 62.757 68.421 33.40 27.65 42.49 5.01
5798 10722 2.505982 CTGCCCTATCACCGGTGG 59.494 66.667 33.40 18.86 0.00 4.61
5799 10723 2.203070 GCTGCCCTATCACCGGTG 60.203 66.667 29.26 29.26 0.00 4.94
5800 10724 2.687200 TGCTGCCCTATCACCGGT 60.687 61.111 0.00 0.00 0.00 5.28
5801 10725 2.109799 CTGCTGCCCTATCACCGG 59.890 66.667 0.00 0.00 0.00 5.28
5802 10726 2.590007 GCTGCTGCCCTATCACCG 60.590 66.667 3.85 0.00 0.00 4.94
5812 10736 3.286751 TTTGACGGTGGCTGCTGC 61.287 61.111 7.10 7.10 38.76 5.25
5813 10737 1.893808 AGTTTGACGGTGGCTGCTG 60.894 57.895 0.00 0.00 0.00 4.41
5814 10738 1.893808 CAGTTTGACGGTGGCTGCT 60.894 57.895 0.00 0.00 0.00 4.24
5815 10739 2.639286 CAGTTTGACGGTGGCTGC 59.361 61.111 0.00 0.00 0.00 5.25
5816 10740 2.639286 GCAGTTTGACGGTGGCTG 59.361 61.111 0.00 0.00 0.00 4.85
5817 10741 2.594592 GGCAGTTTGACGGTGGCT 60.595 61.111 0.00 0.00 34.08 4.75
5828 10752 1.826487 GACCCCACAAACGGCAGTT 60.826 57.895 0.00 0.00 43.50 3.16
5829 10753 1.412453 TAGACCCCACAAACGGCAGT 61.412 55.000 0.00 0.00 0.00 4.40
5830 10754 0.250553 TTAGACCCCACAAACGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
5831 10755 0.535553 GTTAGACCCCACAAACGGCA 60.536 55.000 0.00 0.00 0.00 5.69
5832 10756 1.571215 CGTTAGACCCCACAAACGGC 61.571 60.000 0.00 0.00 40.63 5.68
5833 10757 0.033781 TCGTTAGACCCCACAAACGG 59.966 55.000 6.61 0.00 43.56 4.44
5834 10758 1.142474 GTCGTTAGACCCCACAAACG 58.858 55.000 0.00 0.00 44.46 3.60
5844 10768 1.315257 TGGCGGTAGGGTCGTTAGAC 61.315 60.000 0.00 0.00 46.34 2.59
5845 10769 0.611618 TTGGCGGTAGGGTCGTTAGA 60.612 55.000 0.00 0.00 0.00 2.10
5846 10770 0.179119 CTTGGCGGTAGGGTCGTTAG 60.179 60.000 0.00 0.00 0.00 2.34
5847 10771 1.606885 CCTTGGCGGTAGGGTCGTTA 61.607 60.000 0.00 0.00 0.00 3.18
5848 10772 2.660802 CTTGGCGGTAGGGTCGTT 59.339 61.111 0.00 0.00 0.00 3.85
5849 10773 3.387947 CCTTGGCGGTAGGGTCGT 61.388 66.667 0.00 0.00 0.00 4.34
5850 10774 4.832608 GCCTTGGCGGTAGGGTCG 62.833 72.222 0.00 0.00 33.19 4.79
5851 10775 1.619807 TAAGCCTTGGCGGTAGGGTC 61.620 60.000 5.95 0.00 42.43 4.46
5852 10776 1.614226 TAAGCCTTGGCGGTAGGGT 60.614 57.895 5.95 0.00 45.03 4.34
5853 10777 1.153229 GTAAGCCTTGGCGGTAGGG 60.153 63.158 5.95 0.00 33.19 3.53
5854 10778 1.153229 GGTAAGCCTTGGCGGTAGG 60.153 63.158 5.95 0.00 35.80 3.18
5855 10779 1.520787 CGGTAAGCCTTGGCGGTAG 60.521 63.158 5.95 0.00 34.25 3.18
5856 10780 2.580276 CGGTAAGCCTTGGCGGTA 59.420 61.111 5.95 0.28 34.25 4.02
5879 10803 4.462280 CACCTTACCGACGCCCCC 62.462 72.222 0.00 0.00 0.00 5.40
5880 10804 3.698820 ACACCTTACCGACGCCCC 61.699 66.667 0.00 0.00 0.00 5.80
5881 10805 2.433664 CACACCTTACCGACGCCC 60.434 66.667 0.00 0.00 0.00 6.13
5882 10806 2.433664 CCACACCTTACCGACGCC 60.434 66.667 0.00 0.00 0.00 5.68
5883 10807 3.116531 GCCACACCTTACCGACGC 61.117 66.667 0.00 0.00 0.00 5.19
5884 10808 2.807895 CGCCACACCTTACCGACG 60.808 66.667 0.00 0.00 0.00 5.12
5885 10809 2.025418 CACGCCACACCTTACCGAC 61.025 63.158 0.00 0.00 0.00 4.79
5886 10810 2.340809 CACGCCACACCTTACCGA 59.659 61.111 0.00 0.00 0.00 4.69
5887 10811 3.419759 GCACGCCACACCTTACCG 61.420 66.667 0.00 0.00 0.00 4.02
5888 10812 3.053896 GGCACGCCACACCTTACC 61.054 66.667 2.36 0.00 35.81 2.85
5889 10813 2.281208 TGGCACGCCACACCTTAC 60.281 61.111 6.67 0.00 41.89 2.34
5890 10814 2.031919 CTGGCACGCCACACCTTA 59.968 61.111 6.67 0.00 41.89 2.69
5908 10832 2.091112 CAGAACTCGTGCTCCAGCG 61.091 63.158 0.00 0.00 45.83 5.18
5909 10833 1.005630 ACAGAACTCGTGCTCCAGC 60.006 57.895 0.00 0.00 42.50 4.85
5910 10834 0.315251 TCACAGAACTCGTGCTCCAG 59.685 55.000 0.00 0.00 34.27 3.86
5911 10835 0.032130 GTCACAGAACTCGTGCTCCA 59.968 55.000 0.00 0.00 34.27 3.86
5912 10836 0.032130 TGTCACAGAACTCGTGCTCC 59.968 55.000 0.00 0.00 34.27 4.70
5913 10837 1.001268 TCTGTCACAGAACTCGTGCTC 60.001 52.381 4.55 0.00 37.57 4.26
5914 10838 1.032794 TCTGTCACAGAACTCGTGCT 58.967 50.000 4.55 0.00 37.57 4.40
5915 10839 1.852942 TTCTGTCACAGAACTCGTGC 58.147 50.000 16.67 0.00 44.27 5.34
5922 10846 2.945008 CTGCCAGTTTTCTGTCACAGAA 59.055 45.455 16.67 16.67 46.93 3.02
5923 10847 2.170397 TCTGCCAGTTTTCTGTCACAGA 59.830 45.455 2.36 2.36 45.68 3.41
5924 10848 2.564771 TCTGCCAGTTTTCTGTCACAG 58.435 47.619 0.00 0.00 45.68 3.66
5925 10849 2.708216 TCTGCCAGTTTTCTGTCACA 57.292 45.000 0.00 0.00 45.68 3.58
5926 10850 4.202050 ACAAATCTGCCAGTTTTCTGTCAC 60.202 41.667 0.00 0.00 45.68 3.67
5927 10851 3.953612 ACAAATCTGCCAGTTTTCTGTCA 59.046 39.130 0.00 0.00 45.68 3.58
5928 10852 4.293415 CACAAATCTGCCAGTTTTCTGTC 58.707 43.478 0.00 0.00 45.68 3.51
5929 10853 3.491447 GCACAAATCTGCCAGTTTTCTGT 60.491 43.478 0.00 0.00 45.68 3.41
5930 10854 3.054878 GCACAAATCTGCCAGTTTTCTG 58.945 45.455 0.00 0.00 46.60 3.02
5931 10855 2.287788 CGCACAAATCTGCCAGTTTTCT 60.288 45.455 0.00 0.00 33.18 2.52
5932 10856 2.053627 CGCACAAATCTGCCAGTTTTC 58.946 47.619 0.00 0.00 33.18 2.29
5933 10857 1.269726 CCGCACAAATCTGCCAGTTTT 60.270 47.619 0.00 0.00 33.18 2.43
5934 10858 0.314935 CCGCACAAATCTGCCAGTTT 59.685 50.000 0.00 0.00 33.18 2.66
5935 10859 0.823356 ACCGCACAAATCTGCCAGTT 60.823 50.000 0.00 0.00 33.18 3.16
5936 10860 0.036164 TACCGCACAAATCTGCCAGT 59.964 50.000 0.00 0.00 33.18 4.00
5937 10861 0.729116 CTACCGCACAAATCTGCCAG 59.271 55.000 0.00 0.00 33.18 4.85
5938 10862 0.676466 CCTACCGCACAAATCTGCCA 60.676 55.000 0.00 0.00 33.18 4.92
5939 10863 0.676782 ACCTACCGCACAAATCTGCC 60.677 55.000 0.00 0.00 33.18 4.85
5940 10864 1.165270 AACCTACCGCACAAATCTGC 58.835 50.000 0.00 0.00 0.00 4.26
5941 10865 3.749088 TGTAAACCTACCGCACAAATCTG 59.251 43.478 0.00 0.00 0.00 2.90
5942 10866 4.010667 TGTAAACCTACCGCACAAATCT 57.989 40.909 0.00 0.00 0.00 2.40
5943 10867 4.957759 ATGTAAACCTACCGCACAAATC 57.042 40.909 0.00 0.00 0.00 2.17
5944 10868 4.637091 GGTATGTAAACCTACCGCACAAAT 59.363 41.667 0.00 0.00 36.53 2.32
5945 10869 4.002316 GGTATGTAAACCTACCGCACAAA 58.998 43.478 0.00 0.00 36.53 2.83
5946 10870 3.598299 GGTATGTAAACCTACCGCACAA 58.402 45.455 0.00 0.00 36.53 3.33
5947 10871 2.093553 GGGTATGTAAACCTACCGCACA 60.094 50.000 8.05 0.00 37.81 4.57
5948 10872 2.169144 AGGGTATGTAAACCTACCGCAC 59.831 50.000 8.05 0.00 37.81 5.34
5949 10873 2.469952 AGGGTATGTAAACCTACCGCA 58.530 47.619 8.05 0.00 37.81 5.69
5954 10878 2.965147 GGCGGTAGGGTATGTAAACCTA 59.035 50.000 0.00 0.00 39.65 3.08
5955 10879 1.764723 GGCGGTAGGGTATGTAAACCT 59.235 52.381 0.00 0.00 39.65 3.50
5956 10880 1.485895 TGGCGGTAGGGTATGTAAACC 59.514 52.381 0.00 0.00 38.94 3.27
5957 10881 2.093553 TGTGGCGGTAGGGTATGTAAAC 60.094 50.000 0.00 0.00 0.00 2.01
5958 10882 2.093553 GTGTGGCGGTAGGGTATGTAAA 60.094 50.000 0.00 0.00 0.00 2.01
5959 10883 1.481772 GTGTGGCGGTAGGGTATGTAA 59.518 52.381 0.00 0.00 0.00 2.41
5960 10884 1.113788 GTGTGGCGGTAGGGTATGTA 58.886 55.000 0.00 0.00 0.00 2.29
5961 10885 1.619807 GGTGTGGCGGTAGGGTATGT 61.620 60.000 0.00 0.00 0.00 2.29
5962 10886 1.145377 GGTGTGGCGGTAGGGTATG 59.855 63.158 0.00 0.00 0.00 2.39
5963 10887 2.068213 GGGTGTGGCGGTAGGGTAT 61.068 63.158 0.00 0.00 0.00 2.73
5964 10888 2.684655 GGGTGTGGCGGTAGGGTA 60.685 66.667 0.00 0.00 0.00 3.69
5967 10891 4.446413 GTCGGGTGTGGCGGTAGG 62.446 72.222 0.00 0.00 0.00 3.18
5968 10892 4.789075 CGTCGGGTGTGGCGGTAG 62.789 72.222 0.00 0.00 0.00 3.18
5985 10909 4.814294 CAGTCACGCCCTACCGCC 62.814 72.222 0.00 0.00 0.00 6.13
5986 10910 4.814294 CCAGTCACGCCCTACCGC 62.814 72.222 0.00 0.00 0.00 5.68
5987 10911 4.814294 GCCAGTCACGCCCTACCG 62.814 72.222 0.00 0.00 0.00 4.02
5988 10912 4.814294 CGCCAGTCACGCCCTACC 62.814 72.222 0.00 0.00 0.00 3.18
6005 10929 0.959372 AGTCACAGAATGCAGGCTGC 60.959 55.000 31.91 31.91 42.53 5.25
6006 10930 0.803117 CAGTCACAGAATGCAGGCTG 59.197 55.000 10.94 10.94 42.53 4.85
6007 10931 0.689055 TCAGTCACAGAATGCAGGCT 59.311 50.000 0.00 0.00 42.53 4.58
6008 10932 1.527034 TTCAGTCACAGAATGCAGGC 58.473 50.000 0.00 0.00 42.53 4.85
6009 10933 4.543692 CTTTTTCAGTCACAGAATGCAGG 58.456 43.478 0.00 0.00 42.53 4.85
6010 10934 4.543692 CCTTTTTCAGTCACAGAATGCAG 58.456 43.478 0.00 0.00 42.53 4.41
6011 10935 3.318839 CCCTTTTTCAGTCACAGAATGCA 59.681 43.478 0.00 0.00 42.53 3.96
6012 10936 3.305608 CCCCTTTTTCAGTCACAGAATGC 60.306 47.826 0.00 0.00 42.53 3.56
6013 10937 4.144297 TCCCCTTTTTCAGTCACAGAATG 58.856 43.478 0.00 0.00 46.00 2.67
6014 10938 4.453480 TCCCCTTTTTCAGTCACAGAAT 57.547 40.909 0.00 0.00 0.00 2.40
6015 10939 3.943671 TCCCCTTTTTCAGTCACAGAA 57.056 42.857 0.00 0.00 0.00 3.02
6016 10940 3.551846 GTTCCCCTTTTTCAGTCACAGA 58.448 45.455 0.00 0.00 0.00 3.41
6017 10941 2.290641 CGTTCCCCTTTTTCAGTCACAG 59.709 50.000 0.00 0.00 0.00 3.66
6018 10942 2.294074 CGTTCCCCTTTTTCAGTCACA 58.706 47.619 0.00 0.00 0.00 3.58
6019 10943 1.001706 GCGTTCCCCTTTTTCAGTCAC 60.002 52.381 0.00 0.00 0.00 3.67
6020 10944 1.314730 GCGTTCCCCTTTTTCAGTCA 58.685 50.000 0.00 0.00 0.00 3.41
6021 10945 0.596577 GGCGTTCCCCTTTTTCAGTC 59.403 55.000 0.00 0.00 0.00 3.51
6022 10946 1.170290 CGGCGTTCCCCTTTTTCAGT 61.170 55.000 0.00 0.00 0.00 3.41
6023 10947 1.170290 ACGGCGTTCCCCTTTTTCAG 61.170 55.000 6.77 0.00 0.00 3.02
6024 10948 1.152922 ACGGCGTTCCCCTTTTTCA 60.153 52.632 6.77 0.00 0.00 2.69
6025 10949 1.284715 CACGGCGTTCCCCTTTTTC 59.715 57.895 11.19 0.00 0.00 2.29
6026 10950 2.852180 GCACGGCGTTCCCCTTTTT 61.852 57.895 11.19 0.00 0.00 1.94
6027 10951 3.292159 GCACGGCGTTCCCCTTTT 61.292 61.111 11.19 0.00 0.00 2.27
6038 10962 1.448893 TGAAATCCTACCGCACGGC 60.449 57.895 9.43 0.00 39.32 5.68
6039 10963 0.390603 TGTGAAATCCTACCGCACGG 60.391 55.000 7.71 7.71 42.03 4.94
6040 10964 1.593006 GATGTGAAATCCTACCGCACG 59.407 52.381 0.00 0.00 32.39 5.34
6041 10965 1.940613 GGATGTGAAATCCTACCGCAC 59.059 52.381 0.00 0.00 35.36 5.34
6042 10966 1.837439 AGGATGTGAAATCCTACCGCA 59.163 47.619 1.26 0.00 46.11 5.69
6043 10967 2.622064 AGGATGTGAAATCCTACCGC 57.378 50.000 1.26 0.00 46.11 5.68
6047 10971 2.367567 GGCGGTAGGATGTGAAATCCTA 59.632 50.000 7.30 7.30 46.11 2.94
6049 10973 1.134220 TGGCGGTAGGATGTGAAATCC 60.134 52.381 0.00 0.00 38.47 3.01
6050 10974 2.325583 TGGCGGTAGGATGTGAAATC 57.674 50.000 0.00 0.00 0.00 2.17
6051 10975 2.575532 CATGGCGGTAGGATGTGAAAT 58.424 47.619 0.00 0.00 0.00 2.17
6052 10976 1.408127 CCATGGCGGTAGGATGTGAAA 60.408 52.381 0.00 0.00 0.00 2.69
6053 10977 0.180171 CCATGGCGGTAGGATGTGAA 59.820 55.000 0.00 0.00 0.00 3.18
6054 10978 1.829456 CCATGGCGGTAGGATGTGA 59.171 57.895 0.00 0.00 0.00 3.58
6055 10979 4.462394 CCATGGCGGTAGGATGTG 57.538 61.111 0.00 0.00 0.00 3.21
6066 10990 0.179045 CTACCACTAGGCACCATGGC 60.179 60.000 13.04 0.00 44.10 4.40
6067 10991 0.469917 CCTACCACTAGGCACCATGG 59.530 60.000 11.19 11.19 39.06 3.66
6068 10992 0.469917 CCCTACCACTAGGCACCATG 59.530 60.000 0.00 0.00 38.71 3.66
6069 10993 0.044244 ACCCTACCACTAGGCACCAT 59.956 55.000 0.00 0.00 38.71 3.55
6070 10994 0.616679 GACCCTACCACTAGGCACCA 60.617 60.000 0.00 0.00 38.71 4.17
6071 10995 1.335882 GGACCCTACCACTAGGCACC 61.336 65.000 0.00 0.00 38.71 5.01
6072 10996 0.325390 AGGACCCTACCACTAGGCAC 60.325 60.000 0.00 0.00 38.71 5.01
6073 10997 0.032416 GAGGACCCTACCACTAGGCA 60.032 60.000 0.00 0.00 38.71 4.75
6074 10998 0.032416 TGAGGACCCTACCACTAGGC 60.032 60.000 0.00 0.00 38.71 3.93
6075 10999 1.688627 GGTGAGGACCCTACCACTAGG 60.689 61.905 9.36 0.00 39.67 3.02
6076 11000 1.777941 GGTGAGGACCCTACCACTAG 58.222 60.000 9.36 0.00 36.03 2.57
6078 11002 4.890207 GGTGAGGACCCTACCACT 57.110 61.111 9.36 0.00 36.03 4.00
6106 11030 8.832521 TGTAATTGAAATAGTCACGTTCTTGTT 58.167 29.630 0.00 0.00 35.39 2.83
6107 11031 8.373048 TGTAATTGAAATAGTCACGTTCTTGT 57.627 30.769 0.00 0.00 35.39 3.16
6108 11032 9.103048 GTTGTAATTGAAATAGTCACGTTCTTG 57.897 33.333 0.00 0.00 35.39 3.02
6109 11033 9.052759 AGTTGTAATTGAAATAGTCACGTTCTT 57.947 29.630 0.00 0.00 35.39 2.52
6110 11034 8.603242 AGTTGTAATTGAAATAGTCACGTTCT 57.397 30.769 0.00 0.00 35.39 3.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.