Multiple sequence alignment - TraesCS2D01G463700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G463700 chr2D 100.000 3920 0 0 1 3920 569257741 569253822 0.000000e+00 7239.0
1 TraesCS2D01G463700 chr2D 93.590 78 4 1 924 1000 376701261 376701184 8.900000e-22 115.0
2 TraesCS2D01G463700 chr2D 74.752 202 36 11 3715 3906 23102020 23102216 4.200000e-10 76.8
3 TraesCS2D01G463700 chr2B 95.706 3377 109 22 70 3439 682042245 682038898 0.000000e+00 5400.0
4 TraesCS2D01G463700 chr2A 95.555 2497 74 15 993 3472 709043014 709040538 0.000000e+00 3962.0
5 TraesCS2D01G463700 chr2A 92.762 677 43 6 96 768 709043927 709043253 0.000000e+00 974.0
6 TraesCS2D01G463700 chr2A 95.628 183 7 1 767 949 709043206 709043025 3.830000e-75 292.0
7 TraesCS2D01G463700 chr2A 94.340 53 3 0 1 53 709044104 709044052 9.030000e-12 82.4
8 TraesCS2D01G463700 chr3B 95.833 72 3 0 923 994 822885354 822885425 2.470000e-22 117.0
9 TraesCS2D01G463700 chr6D 94.595 74 2 1 923 994 469492338 469492411 3.200000e-21 113.0
10 TraesCS2D01G463700 chr6D 94.595 74 2 1 923 994 469511146 469511219 3.200000e-21 113.0
11 TraesCS2D01G463700 chr6D 91.358 81 3 4 924 1001 469492411 469492332 1.490000e-19 108.0
12 TraesCS2D01G463700 chr6D 91.358 81 3 4 924 1001 469511219 469511140 1.490000e-19 108.0
13 TraesCS2D01G463700 chr1D 91.463 82 5 2 923 1002 400062900 400062981 1.150000e-20 111.0
14 TraesCS2D01G463700 chrUn 89.157 83 7 2 923 1004 31324797 31324878 6.930000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G463700 chr2D 569253822 569257741 3919 True 7239.0 7239 100.00000 1 3920 1 chr2D.!!$R2 3919
1 TraesCS2D01G463700 chr2B 682038898 682042245 3347 True 5400.0 5400 95.70600 70 3439 1 chr2B.!!$R1 3369
2 TraesCS2D01G463700 chr2A 709040538 709044104 3566 True 1327.6 3962 94.57125 1 3472 4 chr2A.!!$R1 3471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
192 275 0.103937 GAGCAAGGACAGGATCTCGG 59.896 60.0 0.0 0.0 0.00 4.63 F
568 652 0.309612 CTTGGTTTCCCGGTTTCGTG 59.690 55.0 0.0 0.0 33.95 4.35 F
1644 1777 0.332972 GGGGACTTCCAAATGCTCCT 59.667 55.0 0.0 0.0 37.91 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 1804 0.343018 TCCATGACCTCCCATCTGGA 59.657 55.000 0.00 0.0 42.41 3.86 R
1992 2125 3.642141 ACCAGAAATGTGGAAAAGGTGT 58.358 40.909 3.27 0.0 40.44 4.16 R
3540 3709 0.037734 GGGTTTGGGGACGAAGACAT 59.962 55.000 0.00 0.0 33.30 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.023118 CCGATCTGTCGCTCGCTA 58.977 61.111 0.00 0.00 46.32 4.26
45 46 1.808343 TCTGTCGCTCGCTAGTTTGTA 59.192 47.619 0.00 0.00 0.00 2.41
50 51 1.730121 CGCTCGCTAGTTTGTACGGAA 60.730 52.381 0.00 0.00 0.00 4.30
53 54 3.427243 CTCGCTAGTTTGTACGGAAGAG 58.573 50.000 0.00 0.00 0.00 2.85
54 55 2.816087 TCGCTAGTTTGTACGGAAGAGT 59.184 45.455 0.00 0.00 0.00 3.24
55 56 3.254166 TCGCTAGTTTGTACGGAAGAGTT 59.746 43.478 0.00 0.00 0.00 3.01
61 62 3.396260 TTGTACGGAAGAGTTTCTGGG 57.604 47.619 1.65 0.00 42.82 4.45
62 63 2.322658 TGTACGGAAGAGTTTCTGGGT 58.677 47.619 1.65 0.00 42.82 4.51
65 66 1.070289 ACGGAAGAGTTTCTGGGTCAC 59.930 52.381 1.65 0.00 42.82 3.67
68 69 3.551846 GGAAGAGTTTCTGGGTCACAAA 58.448 45.455 0.00 0.00 33.68 2.83
69 70 3.951680 GGAAGAGTTTCTGGGTCACAAAA 59.048 43.478 0.00 0.00 33.68 2.44
70 71 4.036852 GGAAGAGTTTCTGGGTCACAAAAG 59.963 45.833 0.00 0.00 33.68 2.27
71 72 4.236527 AGAGTTTCTGGGTCACAAAAGT 57.763 40.909 0.00 0.00 0.00 2.66
73 74 5.016831 AGAGTTTCTGGGTCACAAAAGTTT 58.983 37.500 0.00 0.00 0.00 2.66
74 75 5.125578 AGAGTTTCTGGGTCACAAAAGTTTC 59.874 40.000 0.00 0.00 0.00 2.78
75 76 5.016831 AGTTTCTGGGTCACAAAAGTTTCT 58.983 37.500 0.00 0.00 0.00 2.52
76 77 5.480422 AGTTTCTGGGTCACAAAAGTTTCTT 59.520 36.000 0.00 0.00 0.00 2.52
77 78 4.981806 TCTGGGTCACAAAAGTTTCTTG 57.018 40.909 0.00 0.00 0.00 3.02
78 79 3.699038 TCTGGGTCACAAAAGTTTCTTGG 59.301 43.478 0.00 0.00 0.00 3.61
80 81 2.483013 GGGTCACAAAAGTTTCTTGGGC 60.483 50.000 0.00 0.00 0.00 5.36
81 82 2.459934 GTCACAAAAGTTTCTTGGGCG 58.540 47.619 0.00 0.00 0.00 6.13
86 87 3.243737 ACAAAAGTTTCTTGGGCGGAATC 60.244 43.478 0.00 0.00 0.00 2.52
117 200 1.675641 CGGAAGAGTTTGGCCCAGG 60.676 63.158 0.00 0.00 0.00 4.45
136 219 1.166531 GGAAAAGCCACAGCACGAGT 61.167 55.000 0.00 0.00 43.56 4.18
149 232 1.522668 CACGAGTCCTTTTGCCATCA 58.477 50.000 0.00 0.00 0.00 3.07
189 272 1.333636 CGGGAGCAAGGACAGGATCT 61.334 60.000 0.00 0.00 0.00 2.75
192 275 0.103937 GAGCAAGGACAGGATCTCGG 59.896 60.000 0.00 0.00 0.00 4.63
384 467 5.811399 TTCCGTCAGCTAATTTTACCATG 57.189 39.130 0.00 0.00 0.00 3.66
404 487 0.802494 AATTTTCCGTTCGCTCGCAT 59.198 45.000 0.00 0.00 0.00 4.73
442 525 9.968870 GATAGGAACCACTAGTAATTTGTCTAG 57.031 37.037 0.00 9.13 39.37 2.43
445 528 7.237055 AGGAACCACTAGTAATTTGTCTAGGTT 59.763 37.037 6.64 6.64 38.24 3.50
452 535 5.731591 AGTAATTTGTCTAGGTTTCCCTCG 58.268 41.667 0.00 0.00 41.45 4.63
511 594 4.641396 TCGAATTAGGATGTATTGGCCTG 58.359 43.478 3.32 0.00 33.28 4.85
529 612 1.660607 CTGGAATCGTCGGATGTGTTG 59.339 52.381 0.00 0.00 31.83 3.33
538 622 2.076100 TCGGATGTGTTGCTCATGTTC 58.924 47.619 0.00 0.00 0.00 3.18
568 652 0.309612 CTTGGTTTCCCGGTTTCGTG 59.690 55.000 0.00 0.00 33.95 4.35
660 745 0.757512 TTGTGTAGTGCGGGGTGTTA 59.242 50.000 0.00 0.00 0.00 2.41
709 794 3.127548 AGCTTTATCACGGATGCTTTGTG 59.872 43.478 0.00 0.00 34.96 3.33
855 988 7.880195 AGAATCTGATTACAAGTTTGTAGCTGT 59.120 33.333 2.28 0.00 43.77 4.40
950 1083 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
951 1084 8.554490 TCCCTCTGTAAAGAAATATAAGAGCT 57.446 34.615 0.00 0.00 0.00 4.09
984 1117 8.680001 TCACTAACGCTCTTATATGTCTTTACA 58.320 33.333 0.00 0.00 40.69 2.41
1009 1142 8.041323 CAGAGGGAGTAGTTGTTATGTACATTT 58.959 37.037 14.77 0.00 36.44 2.32
1170 1303 2.459060 TTGCATTGCAGGGATTTGTG 57.541 45.000 11.76 0.00 40.61 3.33
1286 1419 3.753272 GAGTCTTCAGCCAAGCATTGTTA 59.247 43.478 0.00 0.00 46.99 2.41
1433 1566 2.149973 AATGACCCCAAGGAAGATGC 57.850 50.000 0.00 0.00 36.73 3.91
1434 1567 1.002069 ATGACCCCAAGGAAGATGCA 58.998 50.000 0.00 0.00 36.73 3.96
1455 1588 4.240096 CAGAAACAGGAAATGATGCAACC 58.760 43.478 0.00 0.00 0.00 3.77
1644 1777 0.332972 GGGGACTTCCAAATGCTCCT 59.667 55.000 0.00 0.00 37.91 3.69
2013 2146 3.384467 CACACCTTTTCCACATTTCTGGT 59.616 43.478 0.00 0.00 32.50 4.00
2364 2497 2.851588 GGAGGAGAGGATGGGGCC 60.852 72.222 0.00 0.00 0.00 5.80
2568 2701 1.745489 AAAGCGCCGATTCAGGGTC 60.745 57.895 2.29 0.00 0.00 4.46
2892 3025 1.444895 CACCTGGCAAATCAAGCGC 60.445 57.895 0.00 0.00 0.00 5.92
2913 3046 2.488891 CCCCATCAGTGACAAGGTCAAA 60.489 50.000 0.00 0.00 44.49 2.69
2916 3049 3.441572 CCATCAGTGACAAGGTCAAATCC 59.558 47.826 0.00 0.00 44.49 3.01
3011 3144 3.894427 ACATGTAGGTCAACATTTGGCAA 59.106 39.130 0.00 0.00 38.01 4.52
3140 3273 3.269178 CATCCTTCTGTTTCCAGCTCTC 58.731 50.000 0.00 0.00 38.66 3.20
3158 3291 3.358775 TCTCGTTGCATTCGTTTTTGTG 58.641 40.909 10.66 0.00 0.00 3.33
3200 3333 7.657336 TCTGGTGAAAGAAAAATTACATGACC 58.343 34.615 0.00 0.00 0.00 4.02
3230 3365 6.907212 GCAGGAATAATCGACTTGTGTATTTG 59.093 38.462 0.00 0.00 0.00 2.32
3279 3414 2.929724 TCCCTAGGCTCTAGCTGGATAT 59.070 50.000 2.05 0.00 41.70 1.63
3286 3421 6.942163 AGGCTCTAGCTGGATATATTTCAA 57.058 37.500 0.00 0.00 41.70 2.69
3289 3424 6.478344 GGCTCTAGCTGGATATATTTCAATCG 59.522 42.308 0.00 0.00 41.70 3.34
3299 3464 6.657541 GGATATATTTCAATCGGTGGCCTTTA 59.342 38.462 3.32 0.00 0.00 1.85
3331 3496 9.676861 AGGTATAGGTTTGTAATTTTCAGTACC 57.323 33.333 0.00 0.00 0.00 3.34
3455 3624 2.187946 GCGTGCTCTATGTGGCCT 59.812 61.111 3.32 0.00 0.00 5.19
3472 3641 2.095415 GGCCTTGTAACTAAAACGCTGG 60.095 50.000 0.00 0.00 0.00 4.85
3473 3642 2.095415 GCCTTGTAACTAAAACGCTGGG 60.095 50.000 0.00 0.00 0.00 4.45
3474 3643 3.143728 CCTTGTAACTAAAACGCTGGGT 58.856 45.455 0.00 0.00 0.00 4.51
3475 3644 3.058501 CCTTGTAACTAAAACGCTGGGTG 60.059 47.826 0.00 0.00 0.00 4.61
3476 3645 2.496111 TGTAACTAAAACGCTGGGTGG 58.504 47.619 0.00 0.00 0.00 4.61
3477 3646 1.808343 GTAACTAAAACGCTGGGTGGG 59.192 52.381 0.00 0.00 0.00 4.61
3478 3647 0.538746 AACTAAAACGCTGGGTGGGG 60.539 55.000 0.00 0.00 0.00 4.96
3479 3648 1.677633 CTAAAACGCTGGGTGGGGG 60.678 63.158 0.00 0.00 0.00 5.40
3480 3649 2.420466 CTAAAACGCTGGGTGGGGGT 62.420 60.000 0.00 0.00 0.00 4.95
3481 3650 2.009208 TAAAACGCTGGGTGGGGGTT 62.009 55.000 0.00 0.00 40.63 4.11
3482 3651 2.882403 AAAACGCTGGGTGGGGGTTT 62.882 55.000 0.00 0.00 46.53 3.27
3483 3652 4.596585 ACGCTGGGTGGGGGTTTG 62.597 66.667 0.00 0.00 0.00 2.93
3486 3655 4.315264 CTGGGTGGGGGTTTGGGG 62.315 72.222 0.00 0.00 0.00 4.96
3507 3676 6.742559 GGGGGATTGACTATAGACTTGTAA 57.257 41.667 6.78 0.00 0.00 2.41
3508 3677 6.522946 GGGGGATTGACTATAGACTTGTAAC 58.477 44.000 6.78 0.00 0.00 2.50
3509 3678 6.326843 GGGGGATTGACTATAGACTTGTAACT 59.673 42.308 6.78 0.00 0.00 2.24
3510 3679 7.210873 GGGGATTGACTATAGACTTGTAACTG 58.789 42.308 6.78 0.00 0.00 3.16
3511 3680 7.069578 GGGGATTGACTATAGACTTGTAACTGA 59.930 40.741 6.78 0.00 0.00 3.41
3512 3681 8.475639 GGGATTGACTATAGACTTGTAACTGAA 58.524 37.037 6.78 0.00 0.00 3.02
3513 3682 9.303537 GGATTGACTATAGACTTGTAACTGAAC 57.696 37.037 6.78 0.00 0.00 3.18
3514 3683 9.303537 GATTGACTATAGACTTGTAACTGAACC 57.696 37.037 6.78 0.00 0.00 3.62
3515 3684 7.770366 TGACTATAGACTTGTAACTGAACCA 57.230 36.000 6.78 0.00 0.00 3.67
3516 3685 8.362464 TGACTATAGACTTGTAACTGAACCAT 57.638 34.615 6.78 0.00 0.00 3.55
3517 3686 8.812972 TGACTATAGACTTGTAACTGAACCATT 58.187 33.333 6.78 0.00 0.00 3.16
3518 3687 9.654663 GACTATAGACTTGTAACTGAACCATTT 57.345 33.333 6.78 0.00 0.00 2.32
3519 3688 9.654663 ACTATAGACTTGTAACTGAACCATTTC 57.345 33.333 6.78 0.00 0.00 2.17
3520 3689 7.923414 ATAGACTTGTAACTGAACCATTTCC 57.077 36.000 0.00 0.00 0.00 3.13
3521 3690 5.070685 AGACTTGTAACTGAACCATTTCCC 58.929 41.667 0.00 0.00 0.00 3.97
3522 3691 5.061721 ACTTGTAACTGAACCATTTCCCT 57.938 39.130 0.00 0.00 0.00 4.20
3523 3692 5.454966 ACTTGTAACTGAACCATTTCCCTT 58.545 37.500 0.00 0.00 0.00 3.95
3524 3693 5.897250 ACTTGTAACTGAACCATTTCCCTTT 59.103 36.000 0.00 0.00 0.00 3.11
3525 3694 7.064229 ACTTGTAACTGAACCATTTCCCTTTA 58.936 34.615 0.00 0.00 0.00 1.85
3526 3695 7.728532 ACTTGTAACTGAACCATTTCCCTTTAT 59.271 33.333 0.00 0.00 0.00 1.40
3527 3696 7.696992 TGTAACTGAACCATTTCCCTTTATC 57.303 36.000 0.00 0.00 0.00 1.75
3528 3697 7.235079 TGTAACTGAACCATTTCCCTTTATCA 58.765 34.615 0.00 0.00 0.00 2.15
3529 3698 6.840780 AACTGAACCATTTCCCTTTATCAG 57.159 37.500 0.00 0.00 39.09 2.90
3530 3699 5.892348 ACTGAACCATTTCCCTTTATCAGT 58.108 37.500 0.00 0.00 40.87 3.41
3531 3700 6.314917 ACTGAACCATTTCCCTTTATCAGTT 58.685 36.000 0.00 0.00 42.47 3.16
3532 3701 6.434340 ACTGAACCATTTCCCTTTATCAGTTC 59.566 38.462 0.00 0.00 42.47 3.01
3533 3702 6.310941 TGAACCATTTCCCTTTATCAGTTCA 58.689 36.000 0.00 0.00 38.86 3.18
3534 3703 6.434028 TGAACCATTTCCCTTTATCAGTTCAG 59.566 38.462 0.00 0.00 36.94 3.02
3535 3704 6.139679 ACCATTTCCCTTTATCAGTTCAGA 57.860 37.500 0.00 0.00 0.00 3.27
3536 3705 6.183347 ACCATTTCCCTTTATCAGTTCAGAG 58.817 40.000 0.00 0.00 0.00 3.35
3537 3706 6.183347 CCATTTCCCTTTATCAGTTCAGAGT 58.817 40.000 0.00 0.00 0.00 3.24
3538 3707 7.037586 ACCATTTCCCTTTATCAGTTCAGAGTA 60.038 37.037 0.00 0.00 0.00 2.59
3539 3708 7.995488 CCATTTCCCTTTATCAGTTCAGAGTAT 59.005 37.037 0.00 0.00 0.00 2.12
3543 3712 8.783660 TCCCTTTATCAGTTCAGAGTATATGT 57.216 34.615 0.00 0.00 0.00 2.29
3544 3713 8.861086 TCCCTTTATCAGTTCAGAGTATATGTC 58.139 37.037 0.00 0.00 0.00 3.06
3545 3714 8.865090 CCCTTTATCAGTTCAGAGTATATGTCT 58.135 37.037 0.00 0.00 0.00 3.41
3548 3717 9.952188 TTTATCAGTTCAGAGTATATGTCTTCG 57.048 33.333 0.00 0.00 0.00 3.79
3549 3718 7.575414 ATCAGTTCAGAGTATATGTCTTCGT 57.425 36.000 0.00 0.00 0.00 3.85
3550 3719 7.017498 TCAGTTCAGAGTATATGTCTTCGTC 57.983 40.000 0.00 0.00 0.00 4.20
3551 3720 6.038382 TCAGTTCAGAGTATATGTCTTCGTCC 59.962 42.308 0.00 0.00 0.00 4.79
3552 3721 5.299782 AGTTCAGAGTATATGTCTTCGTCCC 59.700 44.000 0.00 0.00 0.00 4.46
3553 3722 4.142790 TCAGAGTATATGTCTTCGTCCCC 58.857 47.826 0.00 0.00 0.00 4.81
3554 3723 3.889538 CAGAGTATATGTCTTCGTCCCCA 59.110 47.826 0.00 0.00 0.00 4.96
3555 3724 4.341235 CAGAGTATATGTCTTCGTCCCCAA 59.659 45.833 0.00 0.00 0.00 4.12
3556 3725 4.960469 AGAGTATATGTCTTCGTCCCCAAA 59.040 41.667 0.00 0.00 0.00 3.28
3557 3726 5.019785 AGTATATGTCTTCGTCCCCAAAC 57.980 43.478 0.00 0.00 0.00 2.93
3558 3727 2.773993 TATGTCTTCGTCCCCAAACC 57.226 50.000 0.00 0.00 0.00 3.27
3559 3728 0.037734 ATGTCTTCGTCCCCAAACCC 59.962 55.000 0.00 0.00 0.00 4.11
3560 3729 1.303074 GTCTTCGTCCCCAAACCCC 60.303 63.158 0.00 0.00 0.00 4.95
3561 3730 2.035155 CTTCGTCCCCAAACCCCC 59.965 66.667 0.00 0.00 0.00 5.40
3575 3744 3.416351 CCCCCTTGTTCCCTCTCC 58.584 66.667 0.00 0.00 0.00 3.71
3576 3745 1.541368 CCCCCTTGTTCCCTCTCCA 60.541 63.158 0.00 0.00 0.00 3.86
3577 3746 1.140134 CCCCCTTGTTCCCTCTCCAA 61.140 60.000 0.00 0.00 0.00 3.53
3578 3747 1.002857 CCCCTTGTTCCCTCTCCAAT 58.997 55.000 0.00 0.00 0.00 3.16
3579 3748 1.064389 CCCCTTGTTCCCTCTCCAATC 60.064 57.143 0.00 0.00 0.00 2.67
3580 3749 1.918957 CCCTTGTTCCCTCTCCAATCT 59.081 52.381 0.00 0.00 0.00 2.40
3581 3750 2.092699 CCCTTGTTCCCTCTCCAATCTC 60.093 54.545 0.00 0.00 0.00 2.75
3582 3751 2.092699 CCTTGTTCCCTCTCCAATCTCC 60.093 54.545 0.00 0.00 0.00 3.71
3583 3752 1.584724 TGTTCCCTCTCCAATCTCCC 58.415 55.000 0.00 0.00 0.00 4.30
3584 3753 0.840617 GTTCCCTCTCCAATCTCCCC 59.159 60.000 0.00 0.00 0.00 4.81
3585 3754 0.725133 TTCCCTCTCCAATCTCCCCT 59.275 55.000 0.00 0.00 0.00 4.79
3586 3755 0.725133 TCCCTCTCCAATCTCCCCTT 59.275 55.000 0.00 0.00 0.00 3.95
3587 3756 1.082879 TCCCTCTCCAATCTCCCCTTT 59.917 52.381 0.00 0.00 0.00 3.11
3588 3757 1.492599 CCCTCTCCAATCTCCCCTTTC 59.507 57.143 0.00 0.00 0.00 2.62
3589 3758 2.486716 CCTCTCCAATCTCCCCTTTCT 58.513 52.381 0.00 0.00 0.00 2.52
3590 3759 3.633690 CCCTCTCCAATCTCCCCTTTCTA 60.634 52.174 0.00 0.00 0.00 2.10
3591 3760 3.389656 CCTCTCCAATCTCCCCTTTCTAC 59.610 52.174 0.00 0.00 0.00 2.59
3592 3761 3.385115 TCTCCAATCTCCCCTTTCTACC 58.615 50.000 0.00 0.00 0.00 3.18
3593 3762 3.014110 TCTCCAATCTCCCCTTTCTACCT 59.986 47.826 0.00 0.00 0.00 3.08
3594 3763 3.783082 CTCCAATCTCCCCTTTCTACCTT 59.217 47.826 0.00 0.00 0.00 3.50
3595 3764 3.523564 TCCAATCTCCCCTTTCTACCTTG 59.476 47.826 0.00 0.00 0.00 3.61
3596 3765 3.282885 CAATCTCCCCTTTCTACCTTGC 58.717 50.000 0.00 0.00 0.00 4.01
3597 3766 1.286248 TCTCCCCTTTCTACCTTGCC 58.714 55.000 0.00 0.00 0.00 4.52
3598 3767 1.203440 TCTCCCCTTTCTACCTTGCCT 60.203 52.381 0.00 0.00 0.00 4.75
3599 3768 2.045326 TCTCCCCTTTCTACCTTGCCTA 59.955 50.000 0.00 0.00 0.00 3.93
3600 3769 2.436173 CTCCCCTTTCTACCTTGCCTAG 59.564 54.545 0.00 0.00 0.00 3.02
3601 3770 1.134068 CCCCTTTCTACCTTGCCTAGC 60.134 57.143 0.00 0.00 0.00 3.42
3602 3771 1.840635 CCCTTTCTACCTTGCCTAGCT 59.159 52.381 0.00 0.00 0.00 3.32
3603 3772 3.039011 CCCTTTCTACCTTGCCTAGCTA 58.961 50.000 0.00 0.00 0.00 3.32
3604 3773 3.070302 CCCTTTCTACCTTGCCTAGCTAG 59.930 52.174 14.20 14.20 0.00 3.42
3605 3774 3.961408 CCTTTCTACCTTGCCTAGCTAGA 59.039 47.826 22.70 0.00 33.57 2.43
3606 3775 4.591072 CCTTTCTACCTTGCCTAGCTAGAT 59.409 45.833 22.70 3.02 33.57 1.98
3607 3776 5.279256 CCTTTCTACCTTGCCTAGCTAGATC 60.279 48.000 22.70 13.30 33.57 2.75
3608 3777 3.413327 TCTACCTTGCCTAGCTAGATCG 58.587 50.000 22.70 6.73 33.57 3.69
3609 3778 2.074729 ACCTTGCCTAGCTAGATCGT 57.925 50.000 22.70 7.58 33.57 3.73
3610 3779 1.683917 ACCTTGCCTAGCTAGATCGTG 59.316 52.381 22.70 9.72 33.57 4.35
3611 3780 1.957177 CCTTGCCTAGCTAGATCGTGA 59.043 52.381 22.70 1.29 33.57 4.35
3612 3781 2.287909 CCTTGCCTAGCTAGATCGTGAC 60.288 54.545 22.70 3.21 33.57 3.67
3613 3782 2.052782 TGCCTAGCTAGATCGTGACA 57.947 50.000 22.70 5.64 0.00 3.58
3614 3783 2.375146 TGCCTAGCTAGATCGTGACAA 58.625 47.619 22.70 0.00 0.00 3.18
3615 3784 2.959030 TGCCTAGCTAGATCGTGACAAT 59.041 45.455 22.70 0.00 0.00 2.71
3616 3785 3.384789 TGCCTAGCTAGATCGTGACAATT 59.615 43.478 22.70 0.00 0.00 2.32
3617 3786 3.738282 GCCTAGCTAGATCGTGACAATTG 59.262 47.826 22.70 3.24 0.00 2.32
3618 3787 4.499865 GCCTAGCTAGATCGTGACAATTGA 60.500 45.833 22.70 0.00 0.00 2.57
3619 3788 5.777802 CCTAGCTAGATCGTGACAATTGAT 58.222 41.667 22.70 0.00 0.00 2.57
3620 3789 6.570571 GCCTAGCTAGATCGTGACAATTGATA 60.571 42.308 22.70 0.00 0.00 2.15
3621 3790 7.542890 CCTAGCTAGATCGTGACAATTGATAT 58.457 38.462 22.70 0.00 0.00 1.63
3622 3791 8.031864 CCTAGCTAGATCGTGACAATTGATATT 58.968 37.037 22.70 0.00 0.00 1.28
3623 3792 7.881643 AGCTAGATCGTGACAATTGATATTC 57.118 36.000 13.59 0.00 0.00 1.75
3624 3793 7.436933 AGCTAGATCGTGACAATTGATATTCA 58.563 34.615 13.59 2.10 0.00 2.57
3625 3794 7.598118 AGCTAGATCGTGACAATTGATATTCAG 59.402 37.037 13.59 0.59 0.00 3.02
3626 3795 7.596621 GCTAGATCGTGACAATTGATATTCAGA 59.403 37.037 13.59 5.62 0.00 3.27
3627 3796 7.706281 AGATCGTGACAATTGATATTCAGAC 57.294 36.000 13.59 0.00 0.00 3.51
3628 3797 7.495901 AGATCGTGACAATTGATATTCAGACT 58.504 34.615 13.59 0.50 0.00 3.24
3629 3798 6.892310 TCGTGACAATTGATATTCAGACTG 57.108 37.500 13.59 0.00 0.00 3.51
3630 3799 6.630071 TCGTGACAATTGATATTCAGACTGA 58.370 36.000 13.59 0.00 0.00 3.41
3631 3800 6.753744 TCGTGACAATTGATATTCAGACTGAG 59.246 38.462 13.59 0.00 0.00 3.35
3632 3801 6.019237 CGTGACAATTGATATTCAGACTGAGG 60.019 42.308 13.59 0.00 0.00 3.86
3633 3802 6.820656 GTGACAATTGATATTCAGACTGAGGT 59.179 38.462 13.59 1.71 0.00 3.85
3634 3803 7.335422 GTGACAATTGATATTCAGACTGAGGTT 59.665 37.037 13.59 0.00 0.00 3.50
3635 3804 8.539544 TGACAATTGATATTCAGACTGAGGTTA 58.460 33.333 13.59 0.33 0.00 2.85
3636 3805 9.383519 GACAATTGATATTCAGACTGAGGTTAA 57.616 33.333 13.59 0.25 0.00 2.01
3637 3806 9.911788 ACAATTGATATTCAGACTGAGGTTAAT 57.088 29.630 13.59 0.00 0.00 1.40
3640 3809 9.775854 ATTGATATTCAGACTGAGGTTAATCTG 57.224 33.333 5.10 0.00 39.99 2.90
3641 3810 7.730084 TGATATTCAGACTGAGGTTAATCTGG 58.270 38.462 5.10 0.00 39.27 3.86
3642 3811 3.895232 TCAGACTGAGGTTAATCTGGC 57.105 47.619 0.00 0.00 39.27 4.85
3643 3812 2.166459 TCAGACTGAGGTTAATCTGGCG 59.834 50.000 0.00 0.00 39.27 5.69
3644 3813 1.134670 AGACTGAGGTTAATCTGGCGC 60.135 52.381 0.00 0.00 31.79 6.53
3645 3814 0.460284 ACTGAGGTTAATCTGGCGCG 60.460 55.000 0.00 0.00 0.00 6.86
3646 3815 1.766143 CTGAGGTTAATCTGGCGCGC 61.766 60.000 25.94 25.94 0.00 6.86
3647 3816 1.813753 GAGGTTAATCTGGCGCGCA 60.814 57.895 34.42 17.93 0.00 6.09
3648 3817 1.366111 GAGGTTAATCTGGCGCGCAA 61.366 55.000 34.42 23.10 0.00 4.85
3649 3818 1.062525 GGTTAATCTGGCGCGCAAG 59.937 57.895 34.42 32.12 43.44 4.01
3650 3819 1.366111 GGTTAATCTGGCGCGCAAGA 61.366 55.000 38.19 38.19 43.02 3.02
3651 3820 0.446222 GTTAATCTGGCGCGCAAGAA 59.554 50.000 39.42 23.45 43.02 2.52
3652 3821 0.446222 TTAATCTGGCGCGCAAGAAC 59.554 50.000 39.42 19.60 43.02 3.01
3653 3822 0.672091 TAATCTGGCGCGCAAGAACA 60.672 50.000 39.42 27.01 43.02 3.18
3654 3823 1.514678 AATCTGGCGCGCAAGAACAA 61.515 50.000 39.42 19.63 43.02 2.83
3655 3824 2.187599 ATCTGGCGCGCAAGAACAAC 62.188 55.000 39.42 17.26 43.02 3.32
3656 3825 3.879351 CTGGCGCGCAAGAACAACC 62.879 63.158 31.89 10.70 43.02 3.77
3657 3826 4.700365 GGCGCGCAAGAACAACCC 62.700 66.667 34.42 7.22 43.02 4.11
3659 3828 3.645975 CGCGCAAGAACAACCCGT 61.646 61.111 8.75 0.00 43.02 5.28
3660 3829 2.719354 GCGCAAGAACAACCCGTT 59.281 55.556 0.30 0.00 41.86 4.44
3661 3830 1.657181 GCGCAAGAACAACCCGTTG 60.657 57.895 0.30 6.03 43.18 4.10
3662 3831 1.008995 CGCAAGAACAACCCGTTGG 60.009 57.895 11.99 0.00 42.26 3.77
3663 3832 1.720694 CGCAAGAACAACCCGTTGGT 61.721 55.000 11.99 5.11 45.60 3.67
3664 3833 3.837196 CGCAAGAACAACCCGTTGGTG 62.837 57.143 11.99 5.73 43.11 4.17
3671 3840 2.847234 ACCCGTTGGTGGAGCAGA 60.847 61.111 0.00 0.00 45.58 4.26
3672 3841 2.224159 ACCCGTTGGTGGAGCAGAT 61.224 57.895 0.00 0.00 45.58 2.90
3673 3842 1.450312 CCCGTTGGTGGAGCAGATC 60.450 63.158 0.00 0.00 0.00 2.75
3682 3851 3.824810 GAGCAGATCCAGCAAGCC 58.175 61.111 10.04 0.00 0.00 4.35
3683 3852 1.077930 GAGCAGATCCAGCAAGCCA 60.078 57.895 10.04 0.00 0.00 4.75
3684 3853 0.465824 GAGCAGATCCAGCAAGCCAT 60.466 55.000 10.04 0.00 0.00 4.40
3685 3854 0.752009 AGCAGATCCAGCAAGCCATG 60.752 55.000 10.04 0.00 0.00 3.66
3686 3855 0.750546 GCAGATCCAGCAAGCCATGA 60.751 55.000 0.00 0.00 0.00 3.07
3687 3856 1.309950 CAGATCCAGCAAGCCATGAG 58.690 55.000 0.00 0.00 0.00 2.90
3688 3857 0.183014 AGATCCAGCAAGCCATGAGG 59.817 55.000 0.00 0.00 38.23 3.86
3689 3858 0.106819 GATCCAGCAAGCCATGAGGT 60.107 55.000 0.00 0.00 37.19 3.85
3690 3859 0.395311 ATCCAGCAAGCCATGAGGTG 60.395 55.000 0.00 0.00 37.19 4.00
3715 3884 5.461032 TTTTTCACCGTAAATGAGGCATT 57.539 34.783 0.00 0.00 35.39 3.56
3716 3885 5.461032 TTTTCACCGTAAATGAGGCATTT 57.539 34.783 9.93 9.93 44.74 2.32
3717 3886 6.576662 TTTTCACCGTAAATGAGGCATTTA 57.423 33.333 8.16 8.16 41.50 1.40
3718 3887 6.767524 TTTCACCGTAAATGAGGCATTTAT 57.232 33.333 13.71 0.00 44.54 1.40
3719 3888 6.767524 TTCACCGTAAATGAGGCATTTATT 57.232 33.333 13.71 2.41 44.54 1.40
3720 3889 7.867305 TTCACCGTAAATGAGGCATTTATTA 57.133 32.000 13.71 0.00 44.54 0.98
3721 3890 7.867305 TCACCGTAAATGAGGCATTTATTAA 57.133 32.000 13.71 0.00 44.54 1.40
3722 3891 7.699566 TCACCGTAAATGAGGCATTTATTAAC 58.300 34.615 13.71 5.16 44.54 2.01
3723 3892 7.554835 TCACCGTAAATGAGGCATTTATTAACT 59.445 33.333 13.71 0.00 44.54 2.24
3724 3893 7.855904 CACCGTAAATGAGGCATTTATTAACTC 59.144 37.037 13.71 0.00 44.54 3.01
3725 3894 7.554835 ACCGTAAATGAGGCATTTATTAACTCA 59.445 33.333 13.71 0.00 44.54 3.41
3726 3895 8.402472 CCGTAAATGAGGCATTTATTAACTCAA 58.598 33.333 13.71 0.00 44.54 3.02
3727 3896 9.781834 CGTAAATGAGGCATTTATTAACTCAAA 57.218 29.630 13.71 0.00 44.54 2.69
3754 3923 5.409643 AGCATATACAAAACGTGATGAGC 57.590 39.130 7.75 4.23 0.00 4.26
3755 3924 4.875536 AGCATATACAAAACGTGATGAGCA 59.124 37.500 7.75 0.00 0.00 4.26
3756 3925 5.353956 AGCATATACAAAACGTGATGAGCAA 59.646 36.000 7.75 0.00 0.00 3.91
3757 3926 5.452302 GCATATACAAAACGTGATGAGCAAC 59.548 40.000 7.75 0.00 0.00 4.17
3758 3927 6.541969 CATATACAAAACGTGATGAGCAACA 58.458 36.000 7.75 0.00 0.00 3.33
3759 3928 3.988379 ACAAAACGTGATGAGCAACAT 57.012 38.095 7.75 0.00 42.47 2.71
3766 3935 3.768633 GATGAGCAACATCCGACCT 57.231 52.632 11.25 0.00 46.78 3.85
3767 3936 1.576356 GATGAGCAACATCCGACCTC 58.424 55.000 11.25 0.00 46.78 3.85
3768 3937 1.137872 GATGAGCAACATCCGACCTCT 59.862 52.381 11.25 0.00 46.78 3.69
3769 3938 0.247460 TGAGCAACATCCGACCTCTG 59.753 55.000 0.00 0.00 0.00 3.35
3770 3939 1.078848 AGCAACATCCGACCTCTGC 60.079 57.895 0.00 0.00 0.00 4.26
3771 3940 1.375908 GCAACATCCGACCTCTGCA 60.376 57.895 0.00 0.00 0.00 4.41
3772 3941 0.745845 GCAACATCCGACCTCTGCAT 60.746 55.000 0.00 0.00 0.00 3.96
3773 3942 1.473257 GCAACATCCGACCTCTGCATA 60.473 52.381 0.00 0.00 0.00 3.14
3774 3943 2.477825 CAACATCCGACCTCTGCATAG 58.522 52.381 0.00 0.00 0.00 2.23
3775 3944 2.073252 ACATCCGACCTCTGCATAGA 57.927 50.000 0.00 0.00 0.00 1.98
3776 3945 2.603021 ACATCCGACCTCTGCATAGAT 58.397 47.619 0.00 0.00 31.21 1.98
3777 3946 3.767711 ACATCCGACCTCTGCATAGATA 58.232 45.455 0.00 0.00 31.21 1.98
3778 3947 4.152647 ACATCCGACCTCTGCATAGATAA 58.847 43.478 0.00 0.00 31.21 1.75
3779 3948 4.219507 ACATCCGACCTCTGCATAGATAAG 59.780 45.833 0.00 0.00 31.21 1.73
3780 3949 4.100279 TCCGACCTCTGCATAGATAAGA 57.900 45.455 0.00 0.00 31.21 2.10
3781 3950 4.667573 TCCGACCTCTGCATAGATAAGAT 58.332 43.478 0.00 0.00 31.21 2.40
3782 3951 4.460731 TCCGACCTCTGCATAGATAAGATG 59.539 45.833 0.00 0.00 31.21 2.90
3791 3960 2.526304 TAGATAAGATGCACACGGCC 57.474 50.000 0.00 0.00 43.89 6.13
3792 3961 0.541392 AGATAAGATGCACACGGCCA 59.459 50.000 2.24 0.00 43.89 5.36
3793 3962 1.065491 AGATAAGATGCACACGGCCAA 60.065 47.619 2.24 0.00 43.89 4.52
3794 3963 1.742831 GATAAGATGCACACGGCCAAA 59.257 47.619 2.24 0.00 43.89 3.28
3795 3964 1.610363 TAAGATGCACACGGCCAAAA 58.390 45.000 2.24 0.00 43.89 2.44
3796 3965 0.749649 AAGATGCACACGGCCAAAAA 59.250 45.000 2.24 0.00 43.89 1.94
3797 3966 0.031994 AGATGCACACGGCCAAAAAC 59.968 50.000 2.24 0.00 43.89 2.43
3798 3967 0.943835 GATGCACACGGCCAAAAACC 60.944 55.000 2.24 0.00 43.89 3.27
3799 3968 1.680522 ATGCACACGGCCAAAAACCA 61.681 50.000 2.24 0.00 43.89 3.67
3800 3969 1.153549 GCACACGGCCAAAAACCAA 60.154 52.632 2.24 0.00 36.11 3.67
3801 3970 1.425267 GCACACGGCCAAAAACCAAC 61.425 55.000 2.24 0.00 36.11 3.77
3802 3971 0.108615 CACACGGCCAAAAACCAACA 60.109 50.000 2.24 0.00 0.00 3.33
3803 3972 0.608640 ACACGGCCAAAAACCAACAA 59.391 45.000 2.24 0.00 0.00 2.83
3804 3973 1.208293 ACACGGCCAAAAACCAACAAT 59.792 42.857 2.24 0.00 0.00 2.71
3805 3974 1.864082 CACGGCCAAAAACCAACAATC 59.136 47.619 2.24 0.00 0.00 2.67
3806 3975 1.760029 ACGGCCAAAAACCAACAATCT 59.240 42.857 2.24 0.00 0.00 2.40
3807 3976 2.134346 CGGCCAAAAACCAACAATCTG 58.866 47.619 2.24 0.00 0.00 2.90
3808 3977 2.223923 CGGCCAAAAACCAACAATCTGA 60.224 45.455 2.24 0.00 0.00 3.27
3809 3978 3.739519 CGGCCAAAAACCAACAATCTGAA 60.740 43.478 2.24 0.00 0.00 3.02
3810 3979 4.195416 GGCCAAAAACCAACAATCTGAAA 58.805 39.130 0.00 0.00 0.00 2.69
3811 3980 4.637977 GGCCAAAAACCAACAATCTGAAAA 59.362 37.500 0.00 0.00 0.00 2.29
3812 3981 5.124617 GGCCAAAAACCAACAATCTGAAAAA 59.875 36.000 0.00 0.00 0.00 1.94
3842 4011 9.846248 AAAGATAAAAGCTGACATATCAACAAC 57.154 29.630 0.00 0.00 33.30 3.32
3843 4012 8.565896 AGATAAAAGCTGACATATCAACAACA 57.434 30.769 0.00 0.00 33.30 3.33
3844 4013 8.671921 AGATAAAAGCTGACATATCAACAACAG 58.328 33.333 0.00 0.00 33.30 3.16
3845 4014 6.639632 AAAAGCTGACATATCAACAACAGT 57.360 33.333 0.00 0.00 33.30 3.55
3846 4015 7.744087 AAAAGCTGACATATCAACAACAGTA 57.256 32.000 0.00 0.00 33.30 2.74
3847 4016 7.744087 AAAGCTGACATATCAACAACAGTAA 57.256 32.000 0.00 0.00 33.30 2.24
3848 4017 7.744087 AAGCTGACATATCAACAACAGTAAA 57.256 32.000 0.00 0.00 33.30 2.01
3849 4018 7.369803 AGCTGACATATCAACAACAGTAAAG 57.630 36.000 0.00 0.00 33.30 1.85
3850 4019 6.936900 AGCTGACATATCAACAACAGTAAAGT 59.063 34.615 0.00 0.00 33.30 2.66
3851 4020 7.118390 AGCTGACATATCAACAACAGTAAAGTC 59.882 37.037 0.00 0.00 33.30 3.01
3852 4021 7.095229 GCTGACATATCAACAACAGTAAAGTCA 60.095 37.037 0.00 0.00 33.30 3.41
3853 4022 8.846943 TGACATATCAACAACAGTAAAGTCAT 57.153 30.769 0.00 0.00 0.00 3.06
3854 4023 9.936759 TGACATATCAACAACAGTAAAGTCATA 57.063 29.630 0.00 0.00 0.00 2.15
3885 4054 6.274157 ACACACTGTCTATGTAGAAAGAGG 57.726 41.667 12.98 7.76 39.55 3.69
3886 4055 5.775701 ACACACTGTCTATGTAGAAAGAGGT 59.224 40.000 12.98 8.26 39.55 3.85
3887 4056 6.096036 CACACTGTCTATGTAGAAAGAGGTG 58.904 44.000 12.98 14.47 39.55 4.00
3888 4057 5.186021 ACACTGTCTATGTAGAAAGAGGTGG 59.814 44.000 12.98 1.98 39.55 4.61
3889 4058 5.186021 CACTGTCTATGTAGAAAGAGGTGGT 59.814 44.000 12.98 0.00 39.55 4.16
3890 4059 5.780793 ACTGTCTATGTAGAAAGAGGTGGTT 59.219 40.000 12.98 0.00 39.55 3.67
3891 4060 6.037786 TGTCTATGTAGAAAGAGGTGGTTG 57.962 41.667 0.00 0.00 33.47 3.77
3892 4061 5.778241 TGTCTATGTAGAAAGAGGTGGTTGA 59.222 40.000 0.00 0.00 33.47 3.18
3893 4062 6.100668 GTCTATGTAGAAAGAGGTGGTTGAC 58.899 44.000 0.00 0.00 33.47 3.18
3894 4063 3.764237 TGTAGAAAGAGGTGGTTGACC 57.236 47.619 0.00 0.00 46.58 4.02
3895 4064 9.906575 GTCTATGTAGAAAGAGGTGGTTGACCG 62.907 48.148 0.00 0.00 41.11 4.79
3901 4070 4.617875 GGTGGTTGACCGATCTGG 57.382 61.111 2.55 2.55 46.41 3.86
3902 4071 1.980052 GGTGGTTGACCGATCTGGA 59.020 57.895 10.05 0.00 42.00 3.86
3903 4072 0.108138 GGTGGTTGACCGATCTGGAG 60.108 60.000 10.05 0.00 42.00 3.86
3904 4073 0.895530 GTGGTTGACCGATCTGGAGA 59.104 55.000 10.05 0.00 42.00 3.71
3905 4074 1.482593 GTGGTTGACCGATCTGGAGAT 59.517 52.381 10.05 0.00 42.00 2.75
3906 4075 1.757118 TGGTTGACCGATCTGGAGATC 59.243 52.381 10.05 6.58 45.60 2.75
3916 4085 2.975732 TCTGGAGATCATGCTGTCAC 57.024 50.000 0.00 0.00 0.00 3.67
3917 4086 2.181975 TCTGGAGATCATGCTGTCACA 58.818 47.619 0.00 0.00 0.00 3.58
3918 4087 2.093816 TCTGGAGATCATGCTGTCACAC 60.094 50.000 0.00 0.00 0.00 3.82
3919 4088 1.284657 GGAGATCATGCTGTCACACG 58.715 55.000 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.377897 CCAGAAACTCTTCCGTACAAACT 58.622 43.478 0.00 0.00 31.28 2.66
45 46 1.070289 GTGACCCAGAAACTCTTCCGT 59.930 52.381 0.00 0.00 31.28 4.69
50 51 4.236527 ACTTTTGTGACCCAGAAACTCT 57.763 40.909 0.00 0.00 0.00 3.24
53 54 5.324784 AGAAACTTTTGTGACCCAGAAAC 57.675 39.130 0.00 0.00 0.00 2.78
54 55 5.337169 CCAAGAAACTTTTGTGACCCAGAAA 60.337 40.000 0.00 0.00 0.00 2.52
55 56 4.159506 CCAAGAAACTTTTGTGACCCAGAA 59.840 41.667 0.00 0.00 0.00 3.02
61 62 2.459934 CGCCCAAGAAACTTTTGTGAC 58.540 47.619 0.00 0.00 0.00 3.67
62 63 1.407258 CCGCCCAAGAAACTTTTGTGA 59.593 47.619 0.00 0.00 0.00 3.58
65 66 2.880963 TTCCGCCCAAGAAACTTTTG 57.119 45.000 0.00 0.00 0.00 2.44
68 69 1.165270 CGATTCCGCCCAAGAAACTT 58.835 50.000 0.00 0.00 0.00 2.66
69 70 2.854522 CGATTCCGCCCAAGAAACT 58.145 52.632 0.00 0.00 0.00 2.66
117 200 1.166531 ACTCGTGCTGTGGCTTTTCC 61.167 55.000 0.00 0.00 39.59 3.13
136 219 0.821301 TGCACGTGATGGCAAAAGGA 60.821 50.000 22.23 0.00 37.03 3.36
358 441 7.548196 TGGTAAAATTAGCTGACGGAATTAG 57.452 36.000 0.00 0.00 32.61 1.73
384 467 0.165079 TGCGAGCGAACGGAAAATTC 59.835 50.000 0.00 0.00 0.00 2.17
413 496 7.490000 ACAAATTACTAGTGGTTCCTATCGAG 58.510 38.462 5.39 0.00 0.00 4.04
442 525 3.119096 GCGCAGACGAGGGAAACC 61.119 66.667 0.30 0.00 46.70 3.27
465 548 3.692593 ACCCTAATTCGAAACCAAATCCG 59.307 43.478 0.00 0.00 0.00 4.18
511 594 0.373716 GCAACACATCCGACGATTCC 59.626 55.000 0.00 0.00 0.00 3.01
529 612 1.070309 GCATCGAATCGGAACATGAGC 60.070 52.381 1.76 0.00 0.00 4.26
538 622 1.064060 GGAAACCAAGCATCGAATCGG 59.936 52.381 1.76 0.00 0.00 4.18
641 726 0.757512 TAACACCCCGCACTACACAA 59.242 50.000 0.00 0.00 0.00 3.33
709 794 1.239347 AAGAGGCGACTTTTTCCTGC 58.761 50.000 0.00 0.00 44.43 4.85
949 1082 7.701809 ATAAGAGCGTTAGTGATCTAAAAGC 57.298 36.000 0.00 0.04 39.77 3.51
956 1089 8.804688 AAAGACATATAAGAGCGTTAGTGATC 57.195 34.615 0.00 0.00 0.00 2.92
958 1091 8.680001 TGTAAAGACATATAAGAGCGTTAGTGA 58.320 33.333 0.00 0.00 0.00 3.41
959 1092 8.851960 TGTAAAGACATATAAGAGCGTTAGTG 57.148 34.615 0.00 0.00 0.00 2.74
960 1093 8.900781 TCTGTAAAGACATATAAGAGCGTTAGT 58.099 33.333 0.00 0.00 34.24 2.24
961 1094 9.388346 CTCTGTAAAGACATATAAGAGCGTTAG 57.612 37.037 0.00 0.00 34.24 2.34
962 1095 8.350722 CCTCTGTAAAGACATATAAGAGCGTTA 58.649 37.037 0.00 0.00 34.24 3.18
976 1109 5.725325 ACAACTACTCCCTCTGTAAAGAC 57.275 43.478 0.00 0.00 0.00 3.01
984 1117 7.735326 AATGTACATAACAACTACTCCCTCT 57.265 36.000 9.21 0.00 42.70 3.69
1009 1142 1.943293 GCACCGCGTGTTAAAAGGA 59.057 52.632 4.92 0.00 35.75 3.36
1170 1303 3.398406 CCAAACCCAGGCAAATACAAAC 58.602 45.455 0.00 0.00 0.00 2.93
1286 1419 0.740737 GCCCTCGTTGCAAATGCTAT 59.259 50.000 0.00 0.00 42.66 2.97
1433 1566 4.240096 GGTTGCATCATTTCCTGTTTCTG 58.760 43.478 0.00 0.00 0.00 3.02
1434 1567 3.057315 CGGTTGCATCATTTCCTGTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
1455 1588 2.871182 TAATGCTACACTCTGAGGCG 57.129 50.000 9.85 2.25 0.00 5.52
1644 1777 1.133262 CCTGGAACTAGGGGTCCGATA 60.133 57.143 0.00 0.00 34.06 2.92
1671 1804 0.343018 TCCATGACCTCCCATCTGGA 59.657 55.000 0.00 0.00 42.41 3.86
1686 1819 4.618927 CGATCCACAAACAATGCTTTCCAT 60.619 41.667 0.00 0.00 35.06 3.41
1992 2125 3.642141 ACCAGAAATGTGGAAAAGGTGT 58.358 40.909 3.27 0.00 40.44 4.16
2364 2497 3.842428 CAGAAACATCGAACAAGCGAATG 59.158 43.478 0.00 0.00 44.22 2.67
2568 2701 1.067354 GTGCTTGGATCAAAGGGCTTG 60.067 52.381 11.90 0.00 36.25 4.01
2892 3025 0.692476 TGACCTTGTCACTGATGGGG 59.308 55.000 0.00 0.00 37.67 4.96
3140 3273 2.098589 CGACACAAAAACGAATGCAACG 60.099 45.455 13.58 13.58 0.00 4.10
3158 3291 3.243068 ACCAGAAATGCAAACAGAACGAC 60.243 43.478 0.00 0.00 0.00 4.34
3200 3333 3.131709 AGTCGATTATTCCTGCATGGG 57.868 47.619 0.00 0.00 36.20 4.00
3230 3365 1.401552 TGTTTGCTGCAACACTGAGAC 59.598 47.619 15.72 9.24 0.00 3.36
3279 3414 6.783708 AAATAAAGGCCACCGATTGAAATA 57.216 33.333 5.01 0.00 0.00 1.40
3286 3421 3.023832 CCTGAAAATAAAGGCCACCGAT 58.976 45.455 5.01 0.00 0.00 4.18
3289 3424 5.535030 CCTATACCTGAAAATAAAGGCCACC 59.465 44.000 5.01 0.00 37.03 4.61
3331 3496 2.642139 ATCTGGCTTCGCAACAATTG 57.358 45.000 3.24 3.24 0.00 2.32
3398 3567 1.227943 TGACAGGCTGACACCAAGC 60.228 57.895 23.66 0.48 0.00 4.01
3455 3624 2.879646 CCACCCAGCGTTTTAGTTACAA 59.120 45.455 0.00 0.00 0.00 2.41
3484 3653 6.326843 AGTTACAAGTCTATAGTCAATCCCCC 59.673 42.308 0.00 0.00 0.00 5.40
3485 3654 7.069578 TCAGTTACAAGTCTATAGTCAATCCCC 59.930 40.741 0.00 0.00 0.00 4.81
3486 3655 8.008513 TCAGTTACAAGTCTATAGTCAATCCC 57.991 38.462 0.00 0.00 0.00 3.85
3487 3656 9.303537 GTTCAGTTACAAGTCTATAGTCAATCC 57.696 37.037 0.00 0.00 0.00 3.01
3488 3657 9.303537 GGTTCAGTTACAAGTCTATAGTCAATC 57.696 37.037 0.00 0.00 0.00 2.67
3489 3658 8.812972 TGGTTCAGTTACAAGTCTATAGTCAAT 58.187 33.333 0.00 0.00 0.00 2.57
3490 3659 8.185506 TGGTTCAGTTACAAGTCTATAGTCAA 57.814 34.615 0.00 0.00 0.00 3.18
3491 3660 7.770366 TGGTTCAGTTACAAGTCTATAGTCA 57.230 36.000 0.00 0.00 0.00 3.41
3492 3661 9.654663 AAATGGTTCAGTTACAAGTCTATAGTC 57.345 33.333 0.00 0.00 0.00 2.59
3493 3662 9.654663 GAAATGGTTCAGTTACAAGTCTATAGT 57.345 33.333 0.00 0.00 33.61 2.12
3494 3663 9.099454 GGAAATGGTTCAGTTACAAGTCTATAG 57.901 37.037 0.00 0.00 35.25 1.31
3495 3664 8.044908 GGGAAATGGTTCAGTTACAAGTCTATA 58.955 37.037 0.00 0.00 35.25 1.31
3496 3665 6.884836 GGGAAATGGTTCAGTTACAAGTCTAT 59.115 38.462 0.00 0.00 35.25 1.98
3497 3666 6.043938 AGGGAAATGGTTCAGTTACAAGTCTA 59.956 38.462 0.00 0.00 35.25 2.59
3498 3667 5.070685 GGGAAATGGTTCAGTTACAAGTCT 58.929 41.667 0.00 0.00 35.25 3.24
3499 3668 5.070685 AGGGAAATGGTTCAGTTACAAGTC 58.929 41.667 0.00 0.00 35.25 3.01
3500 3669 5.061721 AGGGAAATGGTTCAGTTACAAGT 57.938 39.130 0.00 0.00 35.25 3.16
3501 3670 6.405278 AAAGGGAAATGGTTCAGTTACAAG 57.595 37.500 0.00 0.00 35.25 3.16
3502 3671 7.726291 TGATAAAGGGAAATGGTTCAGTTACAA 59.274 33.333 0.00 0.00 35.25 2.41
3503 3672 7.235079 TGATAAAGGGAAATGGTTCAGTTACA 58.765 34.615 0.00 0.00 35.25 2.41
3504 3673 7.393515 ACTGATAAAGGGAAATGGTTCAGTTAC 59.606 37.037 0.00 0.00 39.47 2.50
3505 3674 7.466804 ACTGATAAAGGGAAATGGTTCAGTTA 58.533 34.615 0.00 0.00 39.47 2.24
3506 3675 6.314917 ACTGATAAAGGGAAATGGTTCAGTT 58.685 36.000 0.00 0.00 39.47 3.16
3507 3676 5.892348 ACTGATAAAGGGAAATGGTTCAGT 58.108 37.500 0.00 0.00 38.12 3.41
3508 3677 6.434028 TGAACTGATAAAGGGAAATGGTTCAG 59.566 38.462 0.00 0.00 36.63 3.02
3509 3678 6.310941 TGAACTGATAAAGGGAAATGGTTCA 58.689 36.000 0.00 0.00 38.34 3.18
3510 3679 6.659242 TCTGAACTGATAAAGGGAAATGGTTC 59.341 38.462 0.00 0.00 33.49 3.62
3511 3680 6.552008 TCTGAACTGATAAAGGGAAATGGTT 58.448 36.000 0.00 0.00 0.00 3.67
3512 3681 6.139679 TCTGAACTGATAAAGGGAAATGGT 57.860 37.500 0.00 0.00 0.00 3.55
3513 3682 6.183347 ACTCTGAACTGATAAAGGGAAATGG 58.817 40.000 0.00 0.00 0.00 3.16
3514 3683 8.970859 ATACTCTGAACTGATAAAGGGAAATG 57.029 34.615 0.00 0.00 0.00 2.32
3517 3686 9.213777 ACATATACTCTGAACTGATAAAGGGAA 57.786 33.333 0.00 0.00 0.00 3.97
3518 3687 8.783660 ACATATACTCTGAACTGATAAAGGGA 57.216 34.615 0.00 0.00 0.00 4.20
3519 3688 8.865090 AGACATATACTCTGAACTGATAAAGGG 58.135 37.037 0.00 0.00 0.00 3.95
3522 3691 9.952188 CGAAGACATATACTCTGAACTGATAAA 57.048 33.333 0.00 0.00 0.00 1.40
3523 3692 9.121658 ACGAAGACATATACTCTGAACTGATAA 57.878 33.333 0.00 0.00 0.00 1.75
3524 3693 8.678593 ACGAAGACATATACTCTGAACTGATA 57.321 34.615 0.00 0.00 0.00 2.15
3525 3694 7.255312 GGACGAAGACATATACTCTGAACTGAT 60.255 40.741 0.00 0.00 0.00 2.90
3526 3695 6.038382 GGACGAAGACATATACTCTGAACTGA 59.962 42.308 0.00 0.00 0.00 3.41
3527 3696 6.202937 GGACGAAGACATATACTCTGAACTG 58.797 44.000 0.00 0.00 0.00 3.16
3528 3697 5.299782 GGGACGAAGACATATACTCTGAACT 59.700 44.000 0.00 0.00 0.00 3.01
3529 3698 5.507650 GGGGACGAAGACATATACTCTGAAC 60.508 48.000 0.00 0.00 0.00 3.18
3530 3699 4.583489 GGGGACGAAGACATATACTCTGAA 59.417 45.833 0.00 0.00 0.00 3.02
3531 3700 4.142790 GGGGACGAAGACATATACTCTGA 58.857 47.826 0.00 0.00 0.00 3.27
3532 3701 3.889538 TGGGGACGAAGACATATACTCTG 59.110 47.826 0.00 0.00 0.00 3.35
3533 3702 4.180377 TGGGGACGAAGACATATACTCT 57.820 45.455 0.00 0.00 0.00 3.24
3534 3703 4.931661 TTGGGGACGAAGACATATACTC 57.068 45.455 0.00 0.00 0.00 2.59
3535 3704 4.141779 GGTTTGGGGACGAAGACATATACT 60.142 45.833 0.00 0.00 33.30 2.12
3536 3705 4.124970 GGTTTGGGGACGAAGACATATAC 58.875 47.826 0.00 0.00 33.30 1.47
3537 3706 3.135167 GGGTTTGGGGACGAAGACATATA 59.865 47.826 0.00 0.00 33.30 0.86
3538 3707 2.092592 GGGTTTGGGGACGAAGACATAT 60.093 50.000 0.00 0.00 33.30 1.78
3539 3708 1.279846 GGGTTTGGGGACGAAGACATA 59.720 52.381 0.00 0.00 33.30 2.29
3540 3709 0.037734 GGGTTTGGGGACGAAGACAT 59.962 55.000 0.00 0.00 33.30 3.06
3541 3710 1.452801 GGGTTTGGGGACGAAGACA 59.547 57.895 0.00 0.00 33.30 3.41
3542 3711 1.303074 GGGGTTTGGGGACGAAGAC 60.303 63.158 0.00 0.00 33.30 3.01
3543 3712 2.531601 GGGGGTTTGGGGACGAAGA 61.532 63.158 0.00 0.00 33.30 2.87
3544 3713 2.035155 GGGGGTTTGGGGACGAAG 59.965 66.667 0.00 0.00 33.30 3.79
3558 3727 1.140134 TTGGAGAGGGAACAAGGGGG 61.140 60.000 0.00 0.00 0.00 5.40
3559 3728 1.002857 ATTGGAGAGGGAACAAGGGG 58.997 55.000 0.00 0.00 0.00 4.79
3560 3729 1.918957 AGATTGGAGAGGGAACAAGGG 59.081 52.381 0.00 0.00 0.00 3.95
3561 3730 2.092699 GGAGATTGGAGAGGGAACAAGG 60.093 54.545 0.00 0.00 0.00 3.61
3562 3731 2.092699 GGGAGATTGGAGAGGGAACAAG 60.093 54.545 0.00 0.00 0.00 3.16
3563 3732 1.916181 GGGAGATTGGAGAGGGAACAA 59.084 52.381 0.00 0.00 0.00 2.83
3564 3733 1.584724 GGGAGATTGGAGAGGGAACA 58.415 55.000 0.00 0.00 0.00 3.18
3565 3734 0.840617 GGGGAGATTGGAGAGGGAAC 59.159 60.000 0.00 0.00 0.00 3.62
3566 3735 0.725133 AGGGGAGATTGGAGAGGGAA 59.275 55.000 0.00 0.00 0.00 3.97
3567 3736 0.725133 AAGGGGAGATTGGAGAGGGA 59.275 55.000 0.00 0.00 0.00 4.20
3568 3737 1.492599 GAAAGGGGAGATTGGAGAGGG 59.507 57.143 0.00 0.00 0.00 4.30
3569 3738 2.486716 AGAAAGGGGAGATTGGAGAGG 58.513 52.381 0.00 0.00 0.00 3.69
3570 3739 3.389656 GGTAGAAAGGGGAGATTGGAGAG 59.610 52.174 0.00 0.00 0.00 3.20
3571 3740 3.014110 AGGTAGAAAGGGGAGATTGGAGA 59.986 47.826 0.00 0.00 0.00 3.71
3572 3741 3.388913 AGGTAGAAAGGGGAGATTGGAG 58.611 50.000 0.00 0.00 0.00 3.86
3573 3742 3.508952 AGGTAGAAAGGGGAGATTGGA 57.491 47.619 0.00 0.00 0.00 3.53
3574 3743 3.891049 CAAGGTAGAAAGGGGAGATTGG 58.109 50.000 0.00 0.00 0.00 3.16
3575 3744 3.282885 GCAAGGTAGAAAGGGGAGATTG 58.717 50.000 0.00 0.00 0.00 2.67
3576 3745 2.242452 GGCAAGGTAGAAAGGGGAGATT 59.758 50.000 0.00 0.00 0.00 2.40
3577 3746 1.847088 GGCAAGGTAGAAAGGGGAGAT 59.153 52.381 0.00 0.00 0.00 2.75
3578 3747 1.203440 AGGCAAGGTAGAAAGGGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
3579 3748 1.290134 AGGCAAGGTAGAAAGGGGAG 58.710 55.000 0.00 0.00 0.00 4.30
3580 3749 2.478292 CTAGGCAAGGTAGAAAGGGGA 58.522 52.381 0.00 0.00 0.00 4.81
3581 3750 1.134068 GCTAGGCAAGGTAGAAAGGGG 60.134 57.143 0.00 0.00 0.00 4.79
3582 3751 1.840635 AGCTAGGCAAGGTAGAAAGGG 59.159 52.381 0.00 0.00 32.98 3.95
3589 3758 2.885266 CACGATCTAGCTAGGCAAGGTA 59.115 50.000 20.58 0.00 37.13 3.08
3590 3759 1.683917 CACGATCTAGCTAGGCAAGGT 59.316 52.381 20.58 9.03 39.81 3.50
3591 3760 1.957177 TCACGATCTAGCTAGGCAAGG 59.043 52.381 20.58 8.34 0.00 3.61
3592 3761 2.359214 TGTCACGATCTAGCTAGGCAAG 59.641 50.000 20.58 11.83 0.00 4.01
3593 3762 2.375146 TGTCACGATCTAGCTAGGCAA 58.625 47.619 20.58 1.76 0.00 4.52
3594 3763 2.052782 TGTCACGATCTAGCTAGGCA 57.947 50.000 20.58 2.54 0.00 4.75
3595 3764 3.651803 ATTGTCACGATCTAGCTAGGC 57.348 47.619 20.58 11.91 0.00 3.93
3596 3765 5.188327 TCAATTGTCACGATCTAGCTAGG 57.812 43.478 20.58 7.39 0.00 3.02
3597 3766 8.978564 AATATCAATTGTCACGATCTAGCTAG 57.021 34.615 15.01 15.01 0.00 3.42
3598 3767 8.576442 TGAATATCAATTGTCACGATCTAGCTA 58.424 33.333 5.13 0.00 0.00 3.32
3599 3768 7.436933 TGAATATCAATTGTCACGATCTAGCT 58.563 34.615 5.13 0.00 0.00 3.32
3600 3769 7.596621 TCTGAATATCAATTGTCACGATCTAGC 59.403 37.037 5.13 0.00 0.00 3.42
3601 3770 8.910666 GTCTGAATATCAATTGTCACGATCTAG 58.089 37.037 5.13 0.00 0.00 2.43
3602 3771 8.633561 AGTCTGAATATCAATTGTCACGATCTA 58.366 33.333 5.13 0.00 0.00 1.98
3603 3772 7.437565 CAGTCTGAATATCAATTGTCACGATCT 59.562 37.037 5.13 1.24 0.00 2.75
3604 3773 7.436376 TCAGTCTGAATATCAATTGTCACGATC 59.564 37.037 5.13 0.00 0.00 3.69
3605 3774 7.267857 TCAGTCTGAATATCAATTGTCACGAT 58.732 34.615 5.13 0.00 0.00 3.73
3606 3775 6.630071 TCAGTCTGAATATCAATTGTCACGA 58.370 36.000 5.13 0.00 0.00 4.35
3607 3776 6.019237 CCTCAGTCTGAATATCAATTGTCACG 60.019 42.308 5.13 0.00 0.00 4.35
3608 3777 6.820656 ACCTCAGTCTGAATATCAATTGTCAC 59.179 38.462 5.13 0.00 0.00 3.67
3609 3778 6.950842 ACCTCAGTCTGAATATCAATTGTCA 58.049 36.000 5.13 0.81 0.00 3.58
3610 3779 7.856145 AACCTCAGTCTGAATATCAATTGTC 57.144 36.000 5.13 0.00 0.00 3.18
3611 3780 9.911788 ATTAACCTCAGTCTGAATATCAATTGT 57.088 29.630 5.13 0.00 0.00 2.71
3614 3783 9.775854 CAGATTAACCTCAGTCTGAATATCAAT 57.224 33.333 3.67 0.82 40.30 2.57
3615 3784 8.206867 CCAGATTAACCTCAGTCTGAATATCAA 58.793 37.037 3.67 0.00 40.30 2.57
3616 3785 7.687837 GCCAGATTAACCTCAGTCTGAATATCA 60.688 40.741 3.67 0.00 40.30 2.15
3617 3786 6.648725 GCCAGATTAACCTCAGTCTGAATATC 59.351 42.308 3.67 3.32 40.30 1.63
3618 3787 6.529220 GCCAGATTAACCTCAGTCTGAATAT 58.471 40.000 3.67 0.00 40.30 1.28
3619 3788 5.451937 CGCCAGATTAACCTCAGTCTGAATA 60.452 44.000 3.67 0.00 40.30 1.75
3620 3789 4.681781 CGCCAGATTAACCTCAGTCTGAAT 60.682 45.833 3.67 0.00 40.30 2.57
3621 3790 3.368427 CGCCAGATTAACCTCAGTCTGAA 60.368 47.826 3.67 0.00 40.30 3.02
3622 3791 2.166459 CGCCAGATTAACCTCAGTCTGA 59.834 50.000 1.78 1.78 40.30 3.27
3623 3792 2.544685 CGCCAGATTAACCTCAGTCTG 58.455 52.381 0.00 0.00 38.20 3.51
3624 3793 1.134670 GCGCCAGATTAACCTCAGTCT 60.135 52.381 0.00 0.00 0.00 3.24
3625 3794 1.291132 GCGCCAGATTAACCTCAGTC 58.709 55.000 0.00 0.00 0.00 3.51
3626 3795 0.460284 CGCGCCAGATTAACCTCAGT 60.460 55.000 0.00 0.00 0.00 3.41
3627 3796 1.766143 GCGCGCCAGATTAACCTCAG 61.766 60.000 23.24 0.00 0.00 3.35
3628 3797 1.813753 GCGCGCCAGATTAACCTCA 60.814 57.895 23.24 0.00 0.00 3.86
3629 3798 1.366111 TTGCGCGCCAGATTAACCTC 61.366 55.000 30.77 0.00 0.00 3.85
3630 3799 1.369091 CTTGCGCGCCAGATTAACCT 61.369 55.000 30.77 0.00 0.00 3.50
3631 3800 1.062525 CTTGCGCGCCAGATTAACC 59.937 57.895 30.77 0.00 0.00 2.85
3632 3801 0.446222 TTCTTGCGCGCCAGATTAAC 59.554 50.000 32.05 1.41 0.00 2.01
3633 3802 0.446222 GTTCTTGCGCGCCAGATTAA 59.554 50.000 32.05 17.24 0.00 1.40
3634 3803 0.672091 TGTTCTTGCGCGCCAGATTA 60.672 50.000 32.05 21.64 0.00 1.75
3635 3804 1.514678 TTGTTCTTGCGCGCCAGATT 61.515 50.000 32.05 0.00 0.00 2.40
3636 3805 1.965930 TTGTTCTTGCGCGCCAGAT 60.966 52.632 32.05 0.00 0.00 2.90
3637 3806 2.590291 TTGTTCTTGCGCGCCAGA 60.590 55.556 28.81 28.81 0.00 3.86
3638 3807 2.427410 GTTGTTCTTGCGCGCCAG 60.427 61.111 30.77 27.69 0.00 4.85
3639 3808 3.959975 GGTTGTTCTTGCGCGCCA 61.960 61.111 30.77 18.21 0.00 5.69
3640 3809 4.700365 GGGTTGTTCTTGCGCGCC 62.700 66.667 30.77 13.48 0.00 6.53
3642 3811 3.175976 AACGGGTTGTTCTTGCGCG 62.176 57.895 0.00 0.00 35.27 6.86
3643 3812 1.657181 CAACGGGTTGTTCTTGCGC 60.657 57.895 0.00 0.00 39.29 6.09
3644 3813 1.008995 CCAACGGGTTGTTCTTGCG 60.009 57.895 10.37 0.00 39.29 4.85
3655 3824 1.450312 GATCTGCTCCACCAACGGG 60.450 63.158 0.00 0.00 41.29 5.28
3656 3825 1.450312 GGATCTGCTCCACCAACGG 60.450 63.158 0.00 0.00 44.26 4.44
3657 3826 4.208632 GGATCTGCTCCACCAACG 57.791 61.111 0.00 0.00 44.26 4.10
3664 3833 1.823041 GGCTTGCTGGATCTGCTCC 60.823 63.158 11.30 0.00 45.19 4.70
3665 3834 0.465824 ATGGCTTGCTGGATCTGCTC 60.466 55.000 11.30 3.04 0.00 4.26
3666 3835 0.752009 CATGGCTTGCTGGATCTGCT 60.752 55.000 11.30 0.00 0.00 4.24
3667 3836 0.750546 TCATGGCTTGCTGGATCTGC 60.751 55.000 0.00 0.00 0.00 4.26
3668 3837 1.309950 CTCATGGCTTGCTGGATCTG 58.690 55.000 0.00 0.00 0.00 2.90
3669 3838 0.183014 CCTCATGGCTTGCTGGATCT 59.817 55.000 0.00 0.00 0.00 2.75
3670 3839 0.106819 ACCTCATGGCTTGCTGGATC 60.107 55.000 15.31 0.00 36.63 3.36
3671 3840 0.395311 CACCTCATGGCTTGCTGGAT 60.395 55.000 15.31 2.43 36.63 3.41
3672 3841 1.001764 CACCTCATGGCTTGCTGGA 60.002 57.895 15.31 0.00 36.63 3.86
3673 3842 2.050350 CCACCTCATGGCTTGCTGG 61.050 63.158 0.00 9.49 43.24 4.85
3674 3843 3.599584 CCACCTCATGGCTTGCTG 58.400 61.111 0.00 0.00 43.24 4.41
3693 3862 5.461032 AATGCCTCATTTACGGTGAAAAA 57.539 34.783 0.00 0.00 28.76 1.94
3694 3863 5.461032 AAATGCCTCATTTACGGTGAAAA 57.539 34.783 3.22 0.00 41.50 2.29
3695 3864 6.767524 ATAAATGCCTCATTTACGGTGAAA 57.232 33.333 12.50 0.00 45.20 2.69
3696 3865 6.767524 AATAAATGCCTCATTTACGGTGAA 57.232 33.333 12.50 0.00 45.20 3.18
3697 3866 7.554835 AGTTAATAAATGCCTCATTTACGGTGA 59.445 33.333 12.50 0.00 45.20 4.02
3698 3867 7.703328 AGTTAATAAATGCCTCATTTACGGTG 58.297 34.615 12.50 0.00 45.20 4.94
3699 3868 7.554835 TGAGTTAATAAATGCCTCATTTACGGT 59.445 33.333 12.50 5.96 45.20 4.83
3700 3869 7.925993 TGAGTTAATAAATGCCTCATTTACGG 58.074 34.615 12.50 0.00 45.20 4.02
3701 3870 9.781834 TTTGAGTTAATAAATGCCTCATTTACG 57.218 29.630 12.50 0.00 45.20 3.18
3728 3897 8.873830 GCTCATCACGTTTTGTATATGCTATAT 58.126 33.333 0.00 0.00 0.00 0.86
3729 3898 7.870445 TGCTCATCACGTTTTGTATATGCTATA 59.130 33.333 0.00 0.00 0.00 1.31
3730 3899 6.705825 TGCTCATCACGTTTTGTATATGCTAT 59.294 34.615 0.00 0.00 0.00 2.97
3731 3900 6.045955 TGCTCATCACGTTTTGTATATGCTA 58.954 36.000 0.00 0.00 0.00 3.49
3732 3901 4.875536 TGCTCATCACGTTTTGTATATGCT 59.124 37.500 0.00 0.00 0.00 3.79
3733 3902 5.155509 TGCTCATCACGTTTTGTATATGC 57.844 39.130 0.00 0.00 0.00 3.14
3734 3903 6.541969 TGTTGCTCATCACGTTTTGTATATG 58.458 36.000 0.00 0.00 0.00 1.78
3735 3904 6.735678 TGTTGCTCATCACGTTTTGTATAT 57.264 33.333 0.00 0.00 0.00 0.86
3736 3905 6.735678 ATGTTGCTCATCACGTTTTGTATA 57.264 33.333 0.00 0.00 29.76 1.47
3737 3906 5.627499 ATGTTGCTCATCACGTTTTGTAT 57.373 34.783 0.00 0.00 29.76 2.29
3739 3908 3.988379 ATGTTGCTCATCACGTTTTGT 57.012 38.095 0.00 0.00 29.76 2.83
3749 3918 1.134580 CAGAGGTCGGATGTTGCTCAT 60.135 52.381 0.00 0.00 39.77 2.90
3750 3919 0.247460 CAGAGGTCGGATGTTGCTCA 59.753 55.000 0.00 0.00 0.00 4.26
3751 3920 1.086634 GCAGAGGTCGGATGTTGCTC 61.087 60.000 0.00 0.00 0.00 4.26
3752 3921 1.078848 GCAGAGGTCGGATGTTGCT 60.079 57.895 0.00 0.00 0.00 3.91
3753 3922 0.745845 ATGCAGAGGTCGGATGTTGC 60.746 55.000 0.00 0.00 0.00 4.17
3754 3923 2.101415 TCTATGCAGAGGTCGGATGTTG 59.899 50.000 8.78 0.00 0.00 3.33
3755 3924 2.388735 TCTATGCAGAGGTCGGATGTT 58.611 47.619 8.78 0.00 0.00 2.71
3756 3925 2.073252 TCTATGCAGAGGTCGGATGT 57.927 50.000 8.78 0.00 0.00 3.06
3757 3926 4.460731 TCTTATCTATGCAGAGGTCGGATG 59.539 45.833 8.78 0.00 33.22 3.51
3758 3927 4.667573 TCTTATCTATGCAGAGGTCGGAT 58.332 43.478 8.78 0.00 33.22 4.18
3759 3928 4.100279 TCTTATCTATGCAGAGGTCGGA 57.900 45.455 8.78 0.41 33.22 4.55
3760 3929 4.742417 CATCTTATCTATGCAGAGGTCGG 58.258 47.826 8.78 0.00 33.22 4.79
3770 3939 2.738846 GGCCGTGTGCATCTTATCTATG 59.261 50.000 0.00 0.00 43.89 2.23
3771 3940 2.368548 TGGCCGTGTGCATCTTATCTAT 59.631 45.455 0.00 0.00 43.89 1.98
3772 3941 1.760029 TGGCCGTGTGCATCTTATCTA 59.240 47.619 0.00 0.00 43.89 1.98
3773 3942 0.541392 TGGCCGTGTGCATCTTATCT 59.459 50.000 0.00 0.00 43.89 1.98
3774 3943 1.378531 TTGGCCGTGTGCATCTTATC 58.621 50.000 0.00 0.00 43.89 1.75
3775 3944 1.832883 TTTGGCCGTGTGCATCTTAT 58.167 45.000 0.00 0.00 43.89 1.73
3776 3945 1.610363 TTTTGGCCGTGTGCATCTTA 58.390 45.000 0.00 0.00 43.89 2.10
3777 3946 0.749649 TTTTTGGCCGTGTGCATCTT 59.250 45.000 0.00 0.00 43.89 2.40
3778 3947 0.031994 GTTTTTGGCCGTGTGCATCT 59.968 50.000 0.00 0.00 43.89 2.90
3779 3948 0.943835 GGTTTTTGGCCGTGTGCATC 60.944 55.000 0.00 0.00 43.89 3.91
3780 3949 1.068921 GGTTTTTGGCCGTGTGCAT 59.931 52.632 0.00 0.00 43.89 3.96
3781 3950 1.888436 TTGGTTTTTGGCCGTGTGCA 61.888 50.000 0.00 0.00 43.89 4.57
3782 3951 1.153549 TTGGTTTTTGGCCGTGTGC 60.154 52.632 0.00 0.00 40.16 4.57
3783 3952 0.108615 TGTTGGTTTTTGGCCGTGTG 60.109 50.000 0.00 0.00 0.00 3.82
3784 3953 0.608640 TTGTTGGTTTTTGGCCGTGT 59.391 45.000 0.00 0.00 0.00 4.49
3785 3954 1.864082 GATTGTTGGTTTTTGGCCGTG 59.136 47.619 0.00 0.00 0.00 4.94
3786 3955 1.760029 AGATTGTTGGTTTTTGGCCGT 59.240 42.857 0.00 0.00 0.00 5.68
3787 3956 2.134346 CAGATTGTTGGTTTTTGGCCG 58.866 47.619 0.00 0.00 0.00 6.13
3788 3957 3.467374 TCAGATTGTTGGTTTTTGGCC 57.533 42.857 0.00 0.00 0.00 5.36
3789 3958 5.809719 TTTTCAGATTGTTGGTTTTTGGC 57.190 34.783 0.00 0.00 0.00 4.52
3816 3985 9.846248 GTTGTTGATATGTCAGCTTTTATCTTT 57.154 29.630 7.75 0.00 36.62 2.52
3817 3986 9.013229 TGTTGTTGATATGTCAGCTTTTATCTT 57.987 29.630 7.75 0.00 36.62 2.40
3818 3987 8.565896 TGTTGTTGATATGTCAGCTTTTATCT 57.434 30.769 7.75 0.00 36.62 1.98
3819 3988 8.454106 ACTGTTGTTGATATGTCAGCTTTTATC 58.546 33.333 7.75 0.00 36.62 1.75
3820 3989 8.340618 ACTGTTGTTGATATGTCAGCTTTTAT 57.659 30.769 7.75 0.00 36.62 1.40
3821 3990 7.744087 ACTGTTGTTGATATGTCAGCTTTTA 57.256 32.000 7.75 0.00 36.62 1.52
3822 3991 6.639632 ACTGTTGTTGATATGTCAGCTTTT 57.360 33.333 7.75 0.00 36.62 2.27
3823 3992 7.744087 TTACTGTTGTTGATATGTCAGCTTT 57.256 32.000 7.75 0.00 36.62 3.51
3824 3993 7.445402 ACTTTACTGTTGTTGATATGTCAGCTT 59.555 33.333 7.75 0.00 36.62 3.74
3825 3994 6.936900 ACTTTACTGTTGTTGATATGTCAGCT 59.063 34.615 7.75 0.00 36.62 4.24
3826 3995 7.095229 TGACTTTACTGTTGTTGATATGTCAGC 60.095 37.037 0.00 0.00 35.39 4.26
3827 3996 8.310406 TGACTTTACTGTTGTTGATATGTCAG 57.690 34.615 0.00 0.00 35.39 3.51
3828 3997 8.846943 ATGACTTTACTGTTGTTGATATGTCA 57.153 30.769 0.00 0.00 34.73 3.58
3841 4010 9.587772 GTGTGTCATCTTATATGACTTTACTGT 57.412 33.333 16.59 0.00 46.25 3.55
3842 4011 9.809096 AGTGTGTCATCTTATATGACTTTACTG 57.191 33.333 16.59 0.00 46.25 2.74
3843 4012 9.809096 CAGTGTGTCATCTTATATGACTTTACT 57.191 33.333 16.59 14.19 46.25 2.24
3844 4013 9.587772 ACAGTGTGTCATCTTATATGACTTTAC 57.412 33.333 16.59 12.70 46.25 2.01
3845 4014 9.803315 GACAGTGTGTCATCTTATATGACTTTA 57.197 33.333 16.59 3.58 46.22 1.85
3846 4015 8.709386 GACAGTGTGTCATCTTATATGACTTT 57.291 34.615 16.59 0.97 46.22 2.66
3862 4031 5.775701 ACCTCTTTCTACATAGACAGTGTGT 59.224 40.000 0.00 0.00 33.13 3.72
3863 4032 6.096036 CACCTCTTTCTACATAGACAGTGTG 58.904 44.000 0.00 10.33 33.13 3.82
3864 4033 5.186021 CCACCTCTTTCTACATAGACAGTGT 59.814 44.000 0.00 0.00 33.13 3.55
3865 4034 5.186021 ACCACCTCTTTCTACATAGACAGTG 59.814 44.000 2.78 0.00 33.13 3.66
3866 4035 5.334421 ACCACCTCTTTCTACATAGACAGT 58.666 41.667 2.78 0.00 33.13 3.55
3867 4036 5.923733 ACCACCTCTTTCTACATAGACAG 57.076 43.478 0.00 0.00 32.72 3.51
3868 4037 5.778241 TCAACCACCTCTTTCTACATAGACA 59.222 40.000 0.00 0.00 30.81 3.41
3869 4038 6.100668 GTCAACCACCTCTTTCTACATAGAC 58.899 44.000 0.00 0.00 30.81 2.59
3870 4039 5.187186 GGTCAACCACCTCTTTCTACATAGA 59.813 44.000 0.00 0.00 42.84 1.98
3871 4040 5.420409 GGTCAACCACCTCTTTCTACATAG 58.580 45.833 0.00 0.00 42.84 2.23
3872 4041 4.081862 CGGTCAACCACCTCTTTCTACATA 60.082 45.833 0.00 0.00 44.21 2.29
3873 4042 3.306780 CGGTCAACCACCTCTTTCTACAT 60.307 47.826 0.00 0.00 44.21 2.29
3874 4043 2.036733 CGGTCAACCACCTCTTTCTACA 59.963 50.000 0.00 0.00 44.21 2.74
3875 4044 2.298163 TCGGTCAACCACCTCTTTCTAC 59.702 50.000 0.00 0.00 44.21 2.59
3876 4045 2.600790 TCGGTCAACCACCTCTTTCTA 58.399 47.619 0.00 0.00 44.21 2.10
3877 4046 1.420430 TCGGTCAACCACCTCTTTCT 58.580 50.000 0.00 0.00 44.21 2.52
3878 4047 2.028020 AGATCGGTCAACCACCTCTTTC 60.028 50.000 0.00 0.00 44.21 2.62
3879 4048 1.978580 AGATCGGTCAACCACCTCTTT 59.021 47.619 0.00 0.00 44.21 2.52
3880 4049 1.276421 CAGATCGGTCAACCACCTCTT 59.724 52.381 0.00 0.00 44.21 2.85
3881 4050 0.898320 CAGATCGGTCAACCACCTCT 59.102 55.000 0.00 0.00 44.21 3.69
3882 4051 0.108138 CCAGATCGGTCAACCACCTC 60.108 60.000 0.00 0.00 44.21 3.85
3883 4052 0.544357 TCCAGATCGGTCAACCACCT 60.544 55.000 0.00 0.00 44.21 4.00
3884 4053 0.108138 CTCCAGATCGGTCAACCACC 60.108 60.000 0.00 0.00 42.69 4.61
3885 4054 0.895530 TCTCCAGATCGGTCAACCAC 59.104 55.000 0.00 0.00 35.57 4.16
3886 4055 1.757118 GATCTCCAGATCGGTCAACCA 59.243 52.381 0.00 0.00 41.15 3.67
3887 4056 2.517650 GATCTCCAGATCGGTCAACC 57.482 55.000 0.00 0.00 41.15 3.77
3896 4065 2.770232 TGTGACAGCATGATCTCCAGAT 59.230 45.455 0.00 0.00 39.69 2.90
3897 4066 2.093816 GTGTGACAGCATGATCTCCAGA 60.094 50.000 0.00 0.00 39.69 3.86
3898 4067 2.277969 GTGTGACAGCATGATCTCCAG 58.722 52.381 0.00 0.00 39.69 3.86
3899 4068 1.404583 CGTGTGACAGCATGATCTCCA 60.405 52.381 0.00 0.00 39.69 3.86
3900 4069 1.284657 CGTGTGACAGCATGATCTCC 58.715 55.000 0.00 0.00 39.69 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.