Multiple sequence alignment - TraesCS2D01G463600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G463600 chr2D 100.000 4538 0 0 1 4538 569198799 569194262 0.000000e+00 8381
1 TraesCS2D01G463600 chr2A 96.464 3903 116 9 72 3972 709031672 709027790 0.000000e+00 6423
2 TraesCS2D01G463600 chr2A 85.627 327 23 13 4222 4538 709027588 709027276 5.660000e-84 322
3 TraesCS2D01G463600 chr2A 93.578 109 7 0 4119 4227 709027775 709027667 3.630000e-36 163
4 TraesCS2D01G463600 chr2B 94.302 3984 185 24 1 3969 682020156 682016200 0.000000e+00 6061
5 TraesCS2D01G463600 chr2B 87.072 526 51 9 4006 4518 682016201 682015680 3.040000e-161 579


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G463600 chr2D 569194262 569198799 4537 True 8381.000000 8381 100.000000 1 4538 1 chr2D.!!$R1 4537
1 TraesCS2D01G463600 chr2A 709027276 709031672 4396 True 2302.666667 6423 91.889667 72 4538 3 chr2A.!!$R1 4466
2 TraesCS2D01G463600 chr2B 682015680 682020156 4476 True 3320.000000 6061 90.687000 1 4518 2 chr2B.!!$R1 4517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 378 0.811616 GAGGGTGCATCGACATGACC 60.812 60.0 0.00 0.00 33.06 4.02 F
1623 1636 0.106268 AAGTTGGTGGTGTGGATGCA 60.106 50.0 0.00 0.00 0.00 3.96 F
2160 2173 0.685097 TGACCAGTGCTTCAGGTACC 59.315 55.0 2.73 2.73 36.05 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2031 2044 0.321210 CGGCCCTGTTGTACACATCA 60.321 55.000 0.0 0.0 33.76 3.07 R
3228 3241 1.202698 GGATCCGCTATTGCTTCCAGT 60.203 52.381 0.0 0.0 36.97 4.00 R
3756 3771 1.132262 CCCCGTGGATTGAACAAATCG 59.868 52.381 0.0 0.0 44.95 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
173 174 2.791927 GAAAAGGGCCGATGACGC 59.208 61.111 0.00 0.00 38.29 5.19
174 175 3.095898 GAAAAGGGCCGATGACGCG 62.096 63.158 3.53 3.53 38.29 6.01
202 203 4.108299 ATTGTCGCCCCATCGCCA 62.108 61.111 0.00 0.00 0.00 5.69
225 227 6.463472 CCAGGCTAGTCTATCATTGTTGATCA 60.463 42.308 0.00 0.00 41.73 2.92
253 255 4.402155 TGAAAAGTCATCAAGGCAACAGTT 59.598 37.500 0.00 0.00 41.41 3.16
254 256 4.574599 AAAGTCATCAAGGCAACAGTTC 57.425 40.909 0.00 0.00 41.41 3.01
256 258 3.144506 AGTCATCAAGGCAACAGTTCTG 58.855 45.455 0.00 0.00 41.41 3.02
266 268 3.077359 GCAACAGTTCTGCCAGACTAAT 58.923 45.455 0.00 0.00 33.51 1.73
325 327 5.932661 GCAAAAGTAAGAGCGAAAATCTCT 58.067 37.500 0.00 0.00 42.31 3.10
342 344 8.948631 AAAATCTCTATTATTTCTCACGAGCA 57.051 30.769 0.00 0.00 0.00 4.26
371 374 2.501128 CGGAGGGTGCATCGACAT 59.499 61.111 0.00 0.00 0.00 3.06
375 378 0.811616 GAGGGTGCATCGACATGACC 60.812 60.000 0.00 0.00 33.06 4.02
415 418 8.501580 GGAATAATACTTTCGGCTAACCATTAC 58.498 37.037 0.00 0.00 34.57 1.89
527 530 8.538409 ACTTTGCAATGATGGTTTATTTTCTC 57.462 30.769 18.35 0.00 0.00 2.87
921 934 2.284190 GATCAGTTAAGCCCAGCTGAC 58.716 52.381 17.39 6.97 38.39 3.51
1185 1198 4.704103 ACTCTGAGCAGCCCGGGA 62.704 66.667 29.31 0.00 0.00 5.14
1266 1279 2.479198 GCGCGCTTCTTTACCACC 59.521 61.111 26.67 0.00 0.00 4.61
1333 1346 0.960364 GCTGCATTTCTTCCCGTCCA 60.960 55.000 0.00 0.00 0.00 4.02
1622 1635 1.039856 AAAGTTGGTGGTGTGGATGC 58.960 50.000 0.00 0.00 0.00 3.91
1623 1636 0.106268 AAGTTGGTGGTGTGGATGCA 60.106 50.000 0.00 0.00 0.00 3.96
1766 1779 3.998341 GCATTCATGTTTTCTGCCAATGT 59.002 39.130 0.00 0.00 0.00 2.71
1914 1927 1.167851 ATGTGACATGGCGGTTCTTG 58.832 50.000 0.00 0.00 0.00 3.02
1956 1969 1.698506 TGGTCCGCCTTCATTTTTGT 58.301 45.000 0.00 0.00 35.27 2.83
2031 2044 3.260380 ACAAGACAGCTGCTGAGAACTAT 59.740 43.478 34.28 11.52 35.18 2.12
2045 2058 6.035435 GCTGAGAACTATGATGTGTACAACAG 59.965 42.308 0.00 0.00 43.64 3.16
2076 2089 7.665559 GGAGGTATTAACAAGGCATATCATGAA 59.334 37.037 0.00 0.00 0.00 2.57
2133 2146 2.610546 TGGCTTCAGCTAGGCCCA 60.611 61.111 17.38 6.34 44.71 5.36
2160 2173 0.685097 TGACCAGTGCTTCAGGTACC 59.315 55.000 2.73 2.73 36.05 3.34
2910 2923 2.202797 CACACGGGAGCAGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
3405 3418 3.505680 TCCATGAAGCTTACAAACGCAAT 59.494 39.130 0.00 0.00 0.00 3.56
3444 3457 1.692411 GAAGCAGTGAACTGGGGTTT 58.308 50.000 12.20 0.00 43.94 3.27
3756 3771 4.634883 CCTTGACATCCTGCTATATCATGC 59.365 45.833 0.00 0.00 0.00 4.06
3766 3781 5.179929 CCTGCTATATCATGCGATTTGTTCA 59.820 40.000 0.00 0.00 32.73 3.18
3768 3783 7.205737 TGCTATATCATGCGATTTGTTCAAT 57.794 32.000 0.00 0.00 32.73 2.57
3859 3874 3.696548 TCAACTTATTTGTGTGTGTGCCA 59.303 39.130 0.00 0.00 36.49 4.92
3911 3926 6.627395 TGTTTGGTGTATTAAACTCCTGTG 57.373 37.500 0.00 0.00 41.50 3.66
3967 3982 1.136891 GCAAACTTCACCCTTTGCTGT 59.863 47.619 7.66 0.00 45.82 4.40
3968 3983 2.360801 GCAAACTTCACCCTTTGCTGTA 59.639 45.455 7.66 0.00 45.82 2.74
3969 3984 3.550842 GCAAACTTCACCCTTTGCTGTAG 60.551 47.826 7.66 0.00 45.82 2.74
3970 3985 3.577805 AACTTCACCCTTTGCTGTAGT 57.422 42.857 0.00 0.00 0.00 2.73
3971 3986 3.577805 ACTTCACCCTTTGCTGTAGTT 57.422 42.857 0.00 0.00 0.00 2.24
3972 3987 3.898482 ACTTCACCCTTTGCTGTAGTTT 58.102 40.909 0.00 0.00 0.00 2.66
3973 3988 4.278310 ACTTCACCCTTTGCTGTAGTTTT 58.722 39.130 0.00 0.00 0.00 2.43
3974 3989 4.709886 ACTTCACCCTTTGCTGTAGTTTTT 59.290 37.500 0.00 0.00 0.00 1.94
4003 4018 1.549203 GGTGCACCCTGAATTCATGT 58.451 50.000 26.31 6.77 0.00 3.21
4004 4019 1.474077 GGTGCACCCTGAATTCATGTC 59.526 52.381 26.31 2.45 0.00 3.06
4009 4024 4.701651 TGCACCCTGAATTCATGTCTAAAG 59.298 41.667 8.96 0.00 0.00 1.85
4021 4036 6.624352 TCATGTCTAAAGCTCCAATAATGC 57.376 37.500 0.00 0.00 0.00 3.56
4027 4042 6.542370 GTCTAAAGCTCCAATAATGCCTTGTA 59.458 38.462 0.00 0.00 0.00 2.41
4080 4097 4.286032 TGTACCCAATCCTCATATACTGCC 59.714 45.833 0.00 0.00 0.00 4.85
4087 4104 1.426423 CTCATATACTGCCGCAGCTG 58.574 55.000 20.56 10.11 43.17 4.24
4161 4178 5.957842 AACTTCCAACAATTGAAGCGATA 57.042 34.783 13.59 0.00 0.00 2.92
4167 4184 8.725405 TTCCAACAATTGAAGCGATATACTTA 57.275 30.769 13.59 0.00 0.00 2.24
4179 4196 9.733219 GAAGCGATATACTTACAGTTCTTAGTT 57.267 33.333 0.00 0.00 0.00 2.24
4282 4382 2.569404 ACCTCTAAACAGAGCCAGGAAG 59.431 50.000 0.00 0.00 34.74 3.46
4297 4398 1.202818 AGGAAGGAAGCAGTTGACACC 60.203 52.381 0.00 0.00 0.00 4.16
4318 4419 7.446769 ACACCAAACCCATAAACCTAAAATTC 58.553 34.615 0.00 0.00 0.00 2.17
4319 4420 7.291416 ACACCAAACCCATAAACCTAAAATTCT 59.709 33.333 0.00 0.00 0.00 2.40
4324 4425 8.485578 AACCCATAAACCTAAAATTCTCACAA 57.514 30.769 0.00 0.00 0.00 3.33
4357 4458 1.913951 ATCATGTGGCTCGGGCTCAA 61.914 55.000 7.48 0.00 38.73 3.02
4381 4482 1.546029 CTCGACACATGGAGGTTCTCA 59.454 52.381 0.00 0.00 31.08 3.27
4393 4494 6.817765 TGGAGGTTCTCATTTAAATGTCAC 57.182 37.500 23.95 18.26 37.65 3.67
4398 4499 5.391629 GGTTCTCATTTAAATGTCACCGACC 60.392 44.000 23.95 19.00 37.65 4.79
4401 4502 6.338146 TCTCATTTAAATGTCACCGACCTAG 58.662 40.000 23.95 12.25 37.65 3.02
4403 4504 7.123098 TCTCATTTAAATGTCACCGACCTAGTA 59.877 37.037 23.95 2.91 37.65 1.82
4404 4505 7.788026 TCATTTAAATGTCACCGACCTAGTAT 58.212 34.615 23.95 0.00 37.65 2.12
4405 4506 7.924412 TCATTTAAATGTCACCGACCTAGTATC 59.076 37.037 23.95 0.00 37.65 2.24
4407 4508 2.812836 TGTCACCGACCTAGTATCCA 57.187 50.000 0.00 0.00 0.00 3.41
4408 4509 2.372264 TGTCACCGACCTAGTATCCAC 58.628 52.381 0.00 0.00 0.00 4.02
4409 4510 2.025605 TGTCACCGACCTAGTATCCACT 60.026 50.000 0.00 0.00 38.91 4.00
4434 4544 9.399403 CTCTTAGAAATAAACAAAAGAGCCAAC 57.601 33.333 0.00 0.00 35.14 3.77
4435 4545 8.073768 TCTTAGAAATAAACAAAAGAGCCAACG 58.926 33.333 0.00 0.00 0.00 4.10
4501 4611 1.770658 TGCTCCTCCCGATTTCATGAT 59.229 47.619 0.00 0.00 0.00 2.45
4515 4625 7.649306 CCGATTTCATGATAATTTTTCACCCTC 59.351 37.037 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.670135 TGACATTTTCTCTAAACGACAAGAAAA 58.330 29.630 10.49 10.49 46.13 2.29
44 45 9.107367 GATTTGACATTTTCTCTAAACGACAAG 57.893 33.333 0.00 0.00 0.00 3.16
82 83 1.861575 GAGAGGCGCTTGTACTATTGC 59.138 52.381 7.64 0.00 0.00 3.56
123 124 2.757099 TCGACGGTAGGGGGCTTC 60.757 66.667 0.00 0.00 0.00 3.86
124 125 3.073101 GTCGACGGTAGGGGGCTT 61.073 66.667 0.00 0.00 0.00 4.35
202 203 6.737720 TGATCAACAATGATAGACTAGCCT 57.262 37.500 0.00 0.00 46.30 4.58
266 268 3.375922 GTGACGGTTTCTTTTCCAAGACA 59.624 43.478 0.00 0.00 38.86 3.41
316 318 9.035607 TGCTCGTGAGAAATAATAGAGATTTTC 57.964 33.333 0.00 0.00 41.32 2.29
325 327 5.163353 TGGGTGATGCTCGTGAGAAATAATA 60.163 40.000 0.00 0.00 41.32 0.98
342 344 3.402681 CCTCCGGTGCTGGGTGAT 61.403 66.667 0.00 0.00 0.00 3.06
371 374 2.282251 AGCGTCTCGGTCAGGTCA 60.282 61.111 0.00 0.00 29.31 4.02
375 378 0.738975 TATTCCAGCGTCTCGGTCAG 59.261 55.000 0.00 0.00 34.62 3.51
445 448 9.630098 ACAGAGCATGTATAAATTTGACTTTTG 57.370 29.630 0.00 1.27 41.60 2.44
527 530 4.075682 TCTCCACACTGTAGACTGAGAAG 58.924 47.826 0.00 0.00 0.00 2.85
921 934 1.337823 ACACCCGAAATCTCGTGGAAG 60.338 52.381 3.37 0.00 43.87 3.46
961 974 2.331805 CGGATCTAGACGGTGCGG 59.668 66.667 0.00 0.00 0.00 5.69
964 977 2.728817 GGGCGGATCTAGACGGTG 59.271 66.667 0.00 0.00 0.00 4.94
1157 1170 2.419324 CTGCTCAGAGTGAAATTCAGGC 59.581 50.000 0.00 0.00 0.00 4.85
1185 1198 2.823147 GCCAGCAGAGCAGCGATT 60.823 61.111 0.00 0.00 40.15 3.34
1266 1279 3.624861 GGCTGAAGTCATACCAAGATGTG 59.375 47.826 0.00 0.00 0.00 3.21
1333 1346 5.291971 GTTTGCACTGAAATTCCTGAATGT 58.708 37.500 0.00 0.00 0.00 2.71
1622 1635 4.201851 CGCTTAATTCAGGAGGAATGTGTG 60.202 45.833 0.00 0.00 45.46 3.82
1623 1636 3.941483 CGCTTAATTCAGGAGGAATGTGT 59.059 43.478 0.00 0.00 45.46 3.72
1656 1669 0.668535 TCAGCCGATACATGGTCTCG 59.331 55.000 0.00 2.21 33.12 4.04
1766 1779 6.040278 TGAAGTATTGGACACAATCAAAGCAA 59.960 34.615 0.00 0.00 43.67 3.91
1914 1927 4.093743 AGTAATCAAAATTGGGGTGGACC 58.906 43.478 0.00 0.00 39.11 4.46
2031 2044 0.321210 CGGCCCTGTTGTACACATCA 60.321 55.000 0.00 0.00 33.76 3.07
2045 2058 1.476291 CCTTGTTAATACCTCCGGCCC 60.476 57.143 0.00 0.00 0.00 5.80
2076 2089 3.933332 GCGGCAAACTATCAAAGTAGTCT 59.067 43.478 0.00 0.00 37.50 3.24
2133 2146 1.277557 GAAGCACTGGTCATGGAGTCT 59.722 52.381 0.00 0.00 0.00 3.24
2160 2173 3.495193 CAAACCATTGAGAAGTGCATCG 58.505 45.455 0.00 0.00 38.94 3.84
2343 2356 5.023533 TCCTTACATAGCACCATGAGAAC 57.976 43.478 0.00 0.00 0.00 3.01
2463 2476 2.644992 CGTGCCAAGGGTGCTTTC 59.355 61.111 0.00 0.00 0.00 2.62
2667 2680 7.442364 TCGATCTCTGTTTCAAATTCTTTCAGT 59.558 33.333 0.00 0.00 0.00 3.41
2910 2923 9.668497 GTCTTAACATCCCTATGAATTATACCC 57.332 37.037 0.00 0.00 36.54 3.69
3228 3241 1.202698 GGATCCGCTATTGCTTCCAGT 60.203 52.381 0.00 0.00 36.97 4.00
3405 3418 1.811965 CCAAATGACTCGCAATCCACA 59.188 47.619 0.00 0.00 0.00 4.17
3444 3457 4.276678 GGCATGCTAAAAGACATATCAGCA 59.723 41.667 18.92 0.00 42.63 4.41
3701 3715 5.859648 TGACACGTCCAAGTTTTTCTTTTTC 59.140 36.000 0.00 0.00 33.63 2.29
3756 3771 1.132262 CCCCGTGGATTGAACAAATCG 59.868 52.381 0.00 0.00 44.95 3.34
3766 3781 2.307686 ACTACATGAAACCCCGTGGATT 59.692 45.455 0.00 0.00 34.81 3.01
3768 3783 1.354101 ACTACATGAAACCCCGTGGA 58.646 50.000 0.00 0.00 34.81 4.02
3859 3874 6.605594 TTGAAATACAAGGAAAACAGGTCTGT 59.394 34.615 0.00 0.00 38.47 3.41
3911 3926 3.443976 ACGACAACCAAAGAATTGTTGC 58.556 40.909 5.71 0.12 41.92 4.17
3926 3941 2.404923 TGGGAACACAGAAACGACAA 57.595 45.000 0.00 0.00 33.40 3.18
3984 3999 1.474077 GACATGAATTCAGGGTGCACC 59.526 52.381 28.57 28.57 40.67 5.01
3985 4000 2.440409 AGACATGAATTCAGGGTGCAC 58.560 47.619 22.84 8.80 30.95 4.57
3986 4001 2.885135 AGACATGAATTCAGGGTGCA 57.115 45.000 22.84 0.00 30.95 4.57
3987 4002 4.439289 GCTTTAGACATGAATTCAGGGTGC 60.439 45.833 22.84 13.50 30.95 5.01
3988 4003 4.946157 AGCTTTAGACATGAATTCAGGGTG 59.054 41.667 22.84 14.34 30.95 4.61
3989 4004 5.184892 AGCTTTAGACATGAATTCAGGGT 57.815 39.130 22.84 18.03 30.95 4.34
3990 4005 4.578105 GGAGCTTTAGACATGAATTCAGGG 59.422 45.833 22.84 15.14 30.95 4.45
3991 4006 5.188434 TGGAGCTTTAGACATGAATTCAGG 58.812 41.667 18.08 18.08 0.00 3.86
3992 4007 6.748333 TTGGAGCTTTAGACATGAATTCAG 57.252 37.500 14.54 8.57 0.00 3.02
3993 4008 8.806429 TTATTGGAGCTTTAGACATGAATTCA 57.194 30.769 11.26 11.26 0.00 2.57
3994 4009 9.674824 CATTATTGGAGCTTTAGACATGAATTC 57.325 33.333 0.00 0.00 0.00 2.17
3995 4010 8.139989 GCATTATTGGAGCTTTAGACATGAATT 58.860 33.333 0.00 0.00 0.00 2.17
3996 4011 7.255730 GGCATTATTGGAGCTTTAGACATGAAT 60.256 37.037 0.00 0.00 0.00 2.57
3997 4012 6.039717 GGCATTATTGGAGCTTTAGACATGAA 59.960 38.462 0.00 0.00 0.00 2.57
3998 4013 5.532406 GGCATTATTGGAGCTTTAGACATGA 59.468 40.000 0.00 0.00 0.00 3.07
3999 4014 5.533903 AGGCATTATTGGAGCTTTAGACATG 59.466 40.000 0.00 0.00 0.00 3.21
4000 4015 5.699143 AGGCATTATTGGAGCTTTAGACAT 58.301 37.500 0.00 0.00 0.00 3.06
4001 4016 5.116084 AGGCATTATTGGAGCTTTAGACA 57.884 39.130 0.00 0.00 0.00 3.41
4002 4017 5.358160 ACAAGGCATTATTGGAGCTTTAGAC 59.642 40.000 0.00 0.00 31.76 2.59
4003 4018 5.509498 ACAAGGCATTATTGGAGCTTTAGA 58.491 37.500 0.00 0.00 31.76 2.10
4004 4019 5.841957 ACAAGGCATTATTGGAGCTTTAG 57.158 39.130 0.00 0.00 31.76 1.85
4009 4024 5.520376 ACATTACAAGGCATTATTGGAGC 57.480 39.130 0.00 0.00 31.76 4.70
4021 4036 6.094048 ACATTAGCTAGTGCAACATTACAAGG 59.906 38.462 15.57 0.00 41.43 3.61
4027 4042 5.964958 ACAACATTAGCTAGTGCAACATT 57.035 34.783 15.57 0.19 41.43 2.71
4080 4097 1.447489 CTCCAGAGGTTCAGCTGCG 60.447 63.158 9.47 0.00 0.00 5.18
4087 4104 1.599576 GAGGCCACTCCAGAGGTTC 59.400 63.158 5.01 0.00 37.79 3.62
4167 4184 8.556213 TGAAAAACACTACAACTAAGAACTGT 57.444 30.769 0.00 0.00 0.00 3.55
4176 4193 5.163693 CCGGAACTTGAAAAACACTACAACT 60.164 40.000 0.00 0.00 0.00 3.16
4179 4196 3.628487 CCCGGAACTTGAAAAACACTACA 59.372 43.478 0.73 0.00 0.00 2.74
4282 4382 1.067060 GGTTTGGTGTCAACTGCTTCC 59.933 52.381 0.00 0.00 31.78 3.46
4297 4398 8.364142 TGTGAGAATTTTAGGTTTATGGGTTTG 58.636 33.333 0.00 0.00 0.00 2.93
4318 4419 6.791887 TGATTTTAGCTGAGAAGTTGTGAG 57.208 37.500 0.00 0.00 0.00 3.51
4319 4420 6.712095 ACATGATTTTAGCTGAGAAGTTGTGA 59.288 34.615 0.00 0.00 0.00 3.58
4324 4425 4.397417 GCCACATGATTTTAGCTGAGAAGT 59.603 41.667 0.00 0.00 0.00 3.01
4357 4458 2.521103 CCTCCATGTGTCGAGGGAT 58.479 57.895 7.63 0.00 41.79 3.85
4375 4476 5.411669 AGGTCGGTGACATTTAAATGAGAAC 59.588 40.000 30.18 22.51 39.67 3.01
4381 4482 7.147620 TGGATACTAGGTCGGTGACATTTAAAT 60.148 37.037 0.00 0.00 33.23 1.40
4393 4494 4.970711 TCTAAGAGTGGATACTAGGTCGG 58.029 47.826 0.00 0.00 37.25 4.79
4404 4505 8.784043 GCTCTTTTGTTTATTTCTAAGAGTGGA 58.216 33.333 0.00 0.00 40.26 4.02
4405 4506 8.023706 GGCTCTTTTGTTTATTTCTAAGAGTGG 58.976 37.037 0.00 0.00 40.26 4.00
4407 4508 8.691661 TGGCTCTTTTGTTTATTTCTAAGAGT 57.308 30.769 0.00 0.00 40.26 3.24
4408 4509 9.399403 GTTGGCTCTTTTGTTTATTTCTAAGAG 57.601 33.333 0.00 0.00 40.78 2.85
4409 4510 8.073768 CGTTGGCTCTTTTGTTTATTTCTAAGA 58.926 33.333 0.00 0.00 0.00 2.10
4424 4534 0.886490 CCTCAGTGCGTTGGCTCTTT 60.886 55.000 0.00 0.00 40.81 2.52
4434 4544 4.307432 TCTTAGAAGTTTTCCTCAGTGCG 58.693 43.478 0.00 0.00 0.00 5.34
4435 4545 6.619801 TTTCTTAGAAGTTTTCCTCAGTGC 57.380 37.500 0.00 0.00 0.00 4.40
4501 4611 4.081309 AGACGATCCGAGGGTGAAAAATTA 60.081 41.667 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.