Multiple sequence alignment - TraesCS2D01G463000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G463000 chr2D 100.000 3344 0 0 1 3344 568939188 568942531 0.000000e+00 6176.0
1 TraesCS2D01G463000 chr2A 92.319 3372 161 39 1 3309 708183696 708187032 0.000000e+00 4702.0
2 TraesCS2D01G463000 chr2B 91.404 3432 138 63 1 3338 681538098 681541466 0.000000e+00 4558.0
3 TraesCS2D01G463000 chr6B 90.638 235 10 7 495 719 23538818 23539050 5.420000e-78 302.0
4 TraesCS2D01G463000 chr5A 90.638 235 10 7 495 719 131829768 131830000 5.420000e-78 302.0
5 TraesCS2D01G463000 chr4A 90.638 235 10 6 495 719 352466066 352466298 5.420000e-78 302.0
6 TraesCS2D01G463000 chr4A 90.295 237 9 8 495 719 10026182 10025948 7.010000e-77 298.0
7 TraesCS2D01G463000 chr4A 89.787 235 12 6 495 719 651850958 651850726 1.170000e-74 291.0
8 TraesCS2D01G463000 chr4A 96.970 33 1 0 1868 1900 740940556 740940588 4.660000e-04 56.5
9 TraesCS2D01G463000 chr1B 90.638 235 10 7 495 719 615956003 615956235 5.420000e-78 302.0
10 TraesCS2D01G463000 chr6A 90.213 235 11 6 495 719 558112423 558112191 2.520000e-76 296.0
11 TraesCS2D01G463000 chr6A 88.186 237 14 6 495 719 571220332 571220098 1.530000e-68 270.0
12 TraesCS2D01G463000 chrUn 89.787 235 12 7 495 719 50158744 50158976 1.170000e-74 291.0
13 TraesCS2D01G463000 chr3B 89.787 235 12 4 495 719 454140557 454140789 1.170000e-74 291.0
14 TraesCS2D01G463000 chr3B 89.787 235 12 4 495 719 454347830 454348062 1.170000e-74 291.0
15 TraesCS2D01G463000 chr7B 88.085 235 16 4 495 719 421246819 421247051 5.500000e-68 268.0
16 TraesCS2D01G463000 chr4B 88.136 236 14 8 495 719 22065078 22064846 5.500000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G463000 chr2D 568939188 568942531 3343 False 6176 6176 100.000 1 3344 1 chr2D.!!$F1 3343
1 TraesCS2D01G463000 chr2A 708183696 708187032 3336 False 4702 4702 92.319 1 3309 1 chr2A.!!$F1 3308
2 TraesCS2D01G463000 chr2B 681538098 681541466 3368 False 4558 4558 91.404 1 3338 1 chr2B.!!$F1 3337

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 235 1.401552 CATCGATTGATTTGCGGTGGT 59.598 47.619 0.0 0.0 32.87 4.16 F
1204 1245 0.312102 GCAACTTGTTCCCTGCTGTC 59.688 55.000 0.0 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2012 1.555075 CCTCCGGGGTACATATCATGG 59.445 57.143 0.00 0.0 33.6 3.66 R
2360 2413 0.036164 AGTGGCGGCATGTACTGAAA 59.964 50.000 17.19 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.357517 GACGGTGACAGTGGCTGG 60.358 66.667 0.00 0.00 35.51 4.85
79 80 4.626081 ACGGTGACAGTGGCTGGC 62.626 66.667 0.00 0.00 40.49 4.85
133 134 2.263077 CTGTTAGTGATGTGAGACGGC 58.737 52.381 0.00 0.00 0.00 5.68
150 151 2.520904 GCTCCGAGCGACAGAATGC 61.521 63.158 4.23 0.00 42.53 3.56
169 170 2.477375 TGCGTGGTTTCTACATCGTTTC 59.523 45.455 0.00 0.00 0.00 2.78
223 224 2.017138 TTTACTGGCGCATCGATTGA 57.983 45.000 10.83 0.00 0.00 2.57
234 235 1.401552 CATCGATTGATTTGCGGTGGT 59.598 47.619 0.00 0.00 32.87 4.16
339 343 3.484229 CGAAGCTAAGAATCAGTTTGCGG 60.484 47.826 0.00 0.00 31.89 5.69
358 362 3.605634 CGGGTTCCATGTGAATCTGTTA 58.394 45.455 7.49 0.00 35.97 2.41
359 363 3.374058 CGGGTTCCATGTGAATCTGTTAC 59.626 47.826 7.49 0.00 35.97 2.50
364 368 6.640907 GGTTCCATGTGAATCTGTTACAAAAC 59.359 38.462 0.00 0.00 34.90 2.43
370 374 3.495377 TGAATCTGTTACAAAACCGGACG 59.505 43.478 9.46 0.00 34.49 4.79
397 421 3.887621 TTTGGATCTAGAACTGACGGG 57.112 47.619 0.00 0.00 0.00 5.28
470 494 6.471519 GTGCAGCTTGTTGAGATTTGATATTC 59.528 38.462 0.00 0.00 0.00 1.75
520 544 6.704310 AGGATGTTAGTACAATGTTTACGGT 58.296 36.000 0.00 0.00 37.91 4.83
564 589 6.759497 AGTAACTAATTGTCATGGGCTTTC 57.241 37.500 0.00 0.00 0.00 2.62
690 730 4.022849 GCTGATGTTTAGTTCCTTGCTTGT 60.023 41.667 0.00 0.00 0.00 3.16
766 807 7.144661 TGTAAATGTTTCCTGTGCAAATAGTG 58.855 34.615 0.00 0.00 0.00 2.74
818 859 3.824443 TCTGATGTTGAACTCTGTACCGA 59.176 43.478 0.00 0.00 0.00 4.69
837 878 4.816385 ACCGATTGCTATGGTGAAAGTATG 59.184 41.667 2.54 0.00 33.91 2.39
840 881 6.073765 CCGATTGCTATGGTGAAAGTATGTAC 60.074 42.308 0.00 0.00 0.00 2.90
850 891 5.411361 GGTGAAAGTATGTACATTGTCTGCA 59.589 40.000 14.77 9.46 0.00 4.41
851 892 6.072728 GGTGAAAGTATGTACATTGTCTGCAA 60.073 38.462 14.77 0.00 39.16 4.08
852 893 7.017645 GTGAAAGTATGTACATTGTCTGCAAG 58.982 38.462 14.77 0.00 38.10 4.01
1011 1052 8.242729 AGTCAGAGAAAACAATGGAAGATTTT 57.757 30.769 0.00 0.00 0.00 1.82
1017 1058 8.877808 AGAAAACAATGGAAGATTTTCAAGAC 57.122 30.769 10.06 0.00 41.44 3.01
1029 1070 4.637483 TTTTCAAGACTGCAACTCCAAG 57.363 40.909 0.00 0.00 0.00 3.61
1204 1245 0.312102 GCAACTTGTTCCCTGCTGTC 59.688 55.000 0.00 0.00 0.00 3.51
1207 1248 1.901591 ACTTGTTCCCTGCTGTCATG 58.098 50.000 0.00 0.00 0.00 3.07
1482 1523 0.464373 AGCATTGGGTGTATCTGGCG 60.464 55.000 0.00 0.00 0.00 5.69
1668 1709 4.932799 TGGATGTACAATTTACTGACACGG 59.067 41.667 0.00 0.00 0.00 4.94
1767 1808 1.212935 GCTGGTGGGTGTGATAGGAAT 59.787 52.381 0.00 0.00 0.00 3.01
2124 2165 0.995024 ACATAGTGAAGCCCTTGCCT 59.005 50.000 0.00 0.00 38.69 4.75
2127 2168 0.036732 TAGTGAAGCCCTTGCCTGTG 59.963 55.000 0.00 0.00 38.69 3.66
2166 2207 1.533753 CTGGGGCCTGGCTTTCAAA 60.534 57.895 19.68 0.00 0.00 2.69
2286 2339 2.997315 TCCGACTGGGAGGTGCTG 60.997 66.667 0.00 0.00 40.94 4.41
2360 2413 0.764890 TGAGTTAGCAGCACCTTGGT 59.235 50.000 0.00 0.00 0.00 3.67
2431 2484 2.602878 CATTTTAGCTGCTGCCACTTG 58.397 47.619 13.43 0.75 40.80 3.16
2570 2624 6.382869 ACACTCTTCATTCAAAAGTCCTTG 57.617 37.500 0.00 0.00 0.00 3.61
2571 2625 6.122277 ACACTCTTCATTCAAAAGTCCTTGA 58.878 36.000 0.00 0.00 33.48 3.02
2606 2673 2.096466 TGCACGCAGTATTCTTTGTTCG 60.096 45.455 0.00 0.00 41.61 3.95
2620 2687 2.084610 TGTTCGTCATCCTTGCTGAG 57.915 50.000 0.00 0.00 0.00 3.35
2621 2688 1.344438 TGTTCGTCATCCTTGCTGAGT 59.656 47.619 0.00 0.00 0.00 3.41
2659 2726 3.255379 GGCCGAGTCGAATCGCAC 61.255 66.667 28.21 21.12 41.37 5.34
2665 2732 0.640768 GAGTCGAATCGCACCTTTCG 59.359 55.000 0.00 0.00 44.53 3.46
2676 2743 2.353269 CGCACCTTTCGGTTGCATATAA 59.647 45.455 0.00 0.00 42.13 0.98
2717 2784 9.344772 ACGTATAGATCAGTAGATTCTGTTCTT 57.655 33.333 10.95 4.73 41.63 2.52
2731 2802 8.024285 AGATTCTGTTCTTCGTACTAAAGAGTG 58.976 37.037 7.40 3.98 36.28 3.51
2749 2820 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
2753 2824 3.866327 GTGTGTGTGTGTGTGTGTATGTA 59.134 43.478 0.00 0.00 0.00 2.29
2760 2831 6.588373 GTGTGTGTGTGTGTATGTATGTATCA 59.412 38.462 0.00 0.00 0.00 2.15
2762 2833 7.657761 TGTGTGTGTGTGTATGTATGTATCAAA 59.342 33.333 0.00 0.00 0.00 2.69
2800 2872 5.220643 GCAGTAAACATTTTGCACTTTGCTT 60.221 36.000 0.00 0.00 45.31 3.91
2839 2911 1.295423 GTACGCAGGCTCAAGGGAA 59.705 57.895 0.00 0.00 0.00 3.97
2840 2912 0.741221 GTACGCAGGCTCAAGGGAAG 60.741 60.000 0.00 0.00 0.00 3.46
2841 2913 1.899437 TACGCAGGCTCAAGGGAAGG 61.899 60.000 0.00 0.00 0.00 3.46
2842 2914 2.044551 GCAGGCTCAAGGGAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
2843 2915 2.606587 GCAGGCTCAAGGGAAGGGA 61.607 63.158 0.00 0.00 0.00 4.20
2879 2956 6.404734 CCAAATCAATTAGAGAAAAGGGGACG 60.405 42.308 0.00 0.00 0.00 4.79
2880 2957 4.216411 TCAATTAGAGAAAAGGGGACGG 57.784 45.455 0.00 0.00 0.00 4.79
2881 2958 3.054655 TCAATTAGAGAAAAGGGGACGGG 60.055 47.826 0.00 0.00 0.00 5.28
2882 2959 2.330661 TTAGAGAAAAGGGGACGGGA 57.669 50.000 0.00 0.00 0.00 5.14
2883 2960 1.565067 TAGAGAAAAGGGGACGGGAC 58.435 55.000 0.00 0.00 0.00 4.46
2952 3029 2.437897 CCCTGCTCCAACTTGCCT 59.562 61.111 0.00 0.00 0.00 4.75
2961 3038 1.663702 CAACTTGCCTTGCTGCTGC 60.664 57.895 8.89 8.89 40.20 5.25
2962 3039 1.831286 AACTTGCCTTGCTGCTGCT 60.831 52.632 17.00 0.00 40.48 4.24
2963 3040 2.083835 AACTTGCCTTGCTGCTGCTG 62.084 55.000 17.00 9.29 40.48 4.41
2964 3041 2.520020 TTGCCTTGCTGCTGCTGT 60.520 55.556 17.00 0.00 40.48 4.40
2973 3050 1.458639 GCTGCTGCTGTTTTCCCTGT 61.459 55.000 8.53 0.00 36.03 4.00
2974 3051 1.896220 CTGCTGCTGTTTTCCCTGTA 58.104 50.000 0.00 0.00 0.00 2.74
2999 3076 1.626356 CCCGCCAATTCCCTCTCAGA 61.626 60.000 0.00 0.00 0.00 3.27
3001 3078 0.250234 CGCCAATTCCCTCTCAGACA 59.750 55.000 0.00 0.00 0.00 3.41
3005 3092 3.129988 GCCAATTCCCTCTCAGACATTTG 59.870 47.826 0.00 0.00 0.00 2.32
3015 3102 1.621317 TCAGACATTTGGCGGTACAGA 59.379 47.619 0.00 0.00 0.00 3.41
3025 3112 2.205074 GGCGGTACAGATTGACAGATG 58.795 52.381 0.00 0.00 0.00 2.90
3091 3197 4.111198 CTCGATGATCACTTTCTGAGGTG 58.889 47.826 0.00 6.54 30.20 4.00
3092 3198 3.763897 TCGATGATCACTTTCTGAGGTGA 59.236 43.478 14.56 14.56 44.84 4.02
3093 3199 4.111198 CGATGATCACTTTCTGAGGTGAG 58.889 47.826 16.37 4.33 44.13 3.51
3094 3200 4.142293 CGATGATCACTTTCTGAGGTGAGA 60.142 45.833 16.37 9.24 44.13 3.27
3095 3201 5.623141 CGATGATCACTTTCTGAGGTGAGAA 60.623 44.000 16.37 10.13 44.13 2.87
3120 3232 0.923358 TCCTGGGGAAAATATGCGGT 59.077 50.000 0.00 0.00 0.00 5.68
3121 3233 2.128535 TCCTGGGGAAAATATGCGGTA 58.871 47.619 0.00 0.00 0.00 4.02
3123 3235 2.105821 CCTGGGGAAAATATGCGGTAGA 59.894 50.000 0.00 0.00 0.00 2.59
3142 3254 4.081695 AGAAGGAGGAGGGAGTACAATT 57.918 45.455 0.00 0.00 0.00 2.32
3229 3341 1.152631 AAACAGTTTGACCCGGGGG 60.153 57.895 27.92 5.70 42.03 5.40
3284 3407 3.376546 GCCTCGCTTTTGATGATTCTTCT 59.623 43.478 1.76 0.00 0.00 2.85
3285 3408 4.142513 GCCTCGCTTTTGATGATTCTTCTT 60.143 41.667 1.76 0.00 0.00 2.52
3286 3409 5.567552 CCTCGCTTTTGATGATTCTTCTTC 58.432 41.667 1.76 0.00 0.00 2.87
3311 3434 2.676632 GGTTTTGTCAACCGGGTTTT 57.323 45.000 10.33 0.00 0.00 2.43
3328 3451 1.228533 TTTACTTCGCCCGTGGTTTC 58.771 50.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.275010 ACATTTCCCCAACCAATTCGC 59.725 47.619 0.00 0.00 0.00 4.70
79 80 2.825532 AGACATTTCCCCAACCAATTCG 59.174 45.455 0.00 0.00 0.00 3.34
133 134 2.226896 CGCATTCTGTCGCTCGGAG 61.227 63.158 0.00 0.00 32.56 4.63
150 151 3.061322 TGGAAACGATGTAGAAACCACG 58.939 45.455 0.00 0.00 0.00 4.94
223 224 2.643551 CTTCCTATGACCACCGCAAAT 58.356 47.619 0.00 0.00 0.00 2.32
234 235 3.370103 CCGGCTAAAACACCTTCCTATGA 60.370 47.826 0.00 0.00 0.00 2.15
292 293 6.073222 GCCGAAAGAACATGAAGAAAAGAGTA 60.073 38.462 0.00 0.00 0.00 2.59
294 295 5.149977 GCCGAAAGAACATGAAGAAAAGAG 58.850 41.667 0.00 0.00 0.00 2.85
339 343 5.957842 TTGTAACAGATTCACATGGAACC 57.042 39.130 0.00 0.00 38.60 3.62
364 368 3.275999 AGATCCAAAATTAACCGTCCGG 58.724 45.455 3.76 3.76 42.03 5.14
370 374 7.201617 CCGTCAGTTCTAGATCCAAAATTAACC 60.202 40.741 0.00 0.00 0.00 2.85
397 421 4.056092 GGTAGCACATTAGACCTACCAC 57.944 50.000 10.03 0.00 45.75 4.16
470 494 1.597027 ACGAAGACAAAGGCCACGG 60.597 57.895 5.01 0.00 0.00 4.94
748 789 3.253188 TGCTCACTATTTGCACAGGAAAC 59.747 43.478 0.00 0.00 0.00 2.78
752 793 2.553602 TGTTGCTCACTATTTGCACAGG 59.446 45.455 0.00 0.00 36.37 4.00
766 807 2.032808 GGAACGTTCACTCTTGTTGCTC 60.033 50.000 28.24 3.77 31.07 4.26
818 859 8.623903 CAATGTACATACTTTCACCATAGCAAT 58.376 33.333 9.21 0.00 0.00 3.56
837 878 7.755582 AAAAGAAAACTTGCAGACAATGTAC 57.244 32.000 0.00 0.00 34.61 2.90
840 881 7.293402 TCAAAAAGAAAACTTGCAGACAATG 57.707 32.000 0.00 0.00 34.61 2.82
893 934 4.574599 AGATCAAAACAAGCACAAGGTC 57.425 40.909 0.00 0.00 0.00 3.85
1011 1052 2.808202 GCTCTTGGAGTTGCAGTCTTGA 60.808 50.000 0.00 0.00 31.39 3.02
1017 1058 0.879765 CAAGGCTCTTGGAGTTGCAG 59.120 55.000 6.96 0.00 31.39 4.41
1029 1070 0.595095 CAGGAACAGCAACAAGGCTC 59.405 55.000 0.00 0.00 43.68 4.70
1204 1245 2.173519 ACTGCCCAAATCTGAACCATG 58.826 47.619 0.00 0.00 0.00 3.66
1207 1248 4.016444 TCATTACTGCCCAAATCTGAACC 58.984 43.478 0.00 0.00 0.00 3.62
1668 1709 1.975363 GAGTGCAGCGAGACCAATGC 61.975 60.000 0.00 0.00 39.14 3.56
1767 1808 1.614525 AGATCTCAGCACCTGCCCA 60.615 57.895 0.00 0.00 43.38 5.36
1971 2012 1.555075 CCTCCGGGGTACATATCATGG 59.445 57.143 0.00 0.00 33.60 3.66
2020 2061 2.475022 GCTGGTTATTTACAACGGCGAC 60.475 50.000 16.62 0.00 0.00 5.19
2166 2207 1.662608 CAGTCTATCGCCGCATCCT 59.337 57.895 0.00 0.00 0.00 3.24
2360 2413 0.036164 AGTGGCGGCATGTACTGAAA 59.964 50.000 17.19 0.00 0.00 2.69
2586 2653 2.096417 ACGAACAAAGAATACTGCGTGC 60.096 45.455 0.00 0.00 0.00 5.34
2606 2673 2.481952 GTGTTCACTCAGCAAGGATGAC 59.518 50.000 0.00 0.00 0.00 3.06
2620 2687 4.320494 CCCAGCAGAATAACAAGTGTTCAC 60.320 45.833 0.00 0.00 39.31 3.18
2621 2688 3.820467 CCCAGCAGAATAACAAGTGTTCA 59.180 43.478 0.00 0.00 39.31 3.18
2665 2732 4.757149 GGGACAGAGACATTATATGCAACC 59.243 45.833 0.00 0.00 0.00 3.77
2717 2784 4.096833 ACACACACACACTCTTTAGTACGA 59.903 41.667 0.00 0.00 33.48 3.43
2731 2802 2.675844 ACATACACACACACACACACAC 59.324 45.455 0.00 0.00 0.00 3.82
2749 2820 8.197439 TCGACTCTGAACATTTGATACATACAT 58.803 33.333 0.00 0.00 0.00 2.29
2753 2824 5.521735 GCTCGACTCTGAACATTTGATACAT 59.478 40.000 0.00 0.00 0.00 2.29
2760 2831 3.393089 ACTGCTCGACTCTGAACATTT 57.607 42.857 0.00 0.00 0.00 2.32
2762 2833 4.238514 GTTTACTGCTCGACTCTGAACAT 58.761 43.478 0.00 0.00 0.00 2.71
2800 2872 0.179032 ACCGACACTTTGCATGGACA 60.179 50.000 0.00 0.00 0.00 4.02
2839 2911 0.404346 TTTGGTCCCTTCCCTTCCCT 60.404 55.000 0.00 0.00 0.00 4.20
2840 2912 0.710588 ATTTGGTCCCTTCCCTTCCC 59.289 55.000 0.00 0.00 0.00 3.97
2841 2913 1.357761 TGATTTGGTCCCTTCCCTTCC 59.642 52.381 0.00 0.00 0.00 3.46
2842 2914 2.899303 TGATTTGGTCCCTTCCCTTC 57.101 50.000 0.00 0.00 0.00 3.46
2843 2915 3.852858 ATTGATTTGGTCCCTTCCCTT 57.147 42.857 0.00 0.00 0.00 3.95
2879 2956 2.730382 ACAATTATTTGGTCCCGTCCC 58.270 47.619 2.66 0.00 37.15 4.46
2880 2957 5.277634 CGATTACAATTATTTGGTCCCGTCC 60.278 44.000 2.66 0.00 37.15 4.79
2881 2958 5.744490 CGATTACAATTATTTGGTCCCGTC 58.256 41.667 2.66 0.00 37.15 4.79
2882 2959 4.035909 GCGATTACAATTATTTGGTCCCGT 59.964 41.667 2.66 0.00 37.15 5.28
2883 2960 4.533222 GCGATTACAATTATTTGGTCCCG 58.467 43.478 2.66 0.00 37.15 5.14
2884 2961 4.339814 TGGCGATTACAATTATTTGGTCCC 59.660 41.667 2.66 3.05 37.15 4.46
2885 2962 5.298276 TCTGGCGATTACAATTATTTGGTCC 59.702 40.000 2.66 0.00 37.15 4.46
2886 2963 6.371809 TCTGGCGATTACAATTATTTGGTC 57.628 37.500 2.66 0.00 37.15 4.02
2887 2964 6.735694 GCATCTGGCGATTACAATTATTTGGT 60.736 38.462 2.66 0.00 37.15 3.67
2888 2965 5.630680 GCATCTGGCGATTACAATTATTTGG 59.369 40.000 2.66 0.00 37.15 3.28
2952 3029 0.756442 AGGGAAAACAGCAGCAGCAA 60.756 50.000 3.17 0.00 45.49 3.91
2961 3038 2.613725 GGGTACGGTACAGGGAAAACAG 60.614 54.545 19.14 0.00 0.00 3.16
2962 3039 1.347378 GGGTACGGTACAGGGAAAACA 59.653 52.381 19.14 0.00 0.00 2.83
2963 3040 1.672737 CGGGTACGGTACAGGGAAAAC 60.673 57.143 19.14 0.18 36.18 2.43
2964 3041 0.607620 CGGGTACGGTACAGGGAAAA 59.392 55.000 19.14 0.00 36.18 2.29
2973 3050 1.521616 GGAATTGGCGGGTACGGTA 59.478 57.895 0.00 0.00 41.36 4.02
2974 3051 2.269883 GGAATTGGCGGGTACGGT 59.730 61.111 0.00 0.00 41.36 4.83
2999 3076 2.747446 GTCAATCTGTACCGCCAAATGT 59.253 45.455 0.00 0.00 0.00 2.71
3001 3078 3.009723 CTGTCAATCTGTACCGCCAAAT 58.990 45.455 0.00 0.00 0.00 2.32
3005 3092 2.205074 CATCTGTCAATCTGTACCGCC 58.795 52.381 0.00 0.00 0.00 6.13
3015 3102 1.615116 CCACCACCTGCATCTGTCAAT 60.615 52.381 0.00 0.00 0.00 2.57
3091 3197 4.576330 TTTTCCCCAGGATTCTCTTCTC 57.424 45.455 0.00 0.00 0.00 2.87
3092 3198 6.608922 CATATTTTCCCCAGGATTCTCTTCT 58.391 40.000 0.00 0.00 0.00 2.85
3093 3199 5.242615 GCATATTTTCCCCAGGATTCTCTTC 59.757 44.000 0.00 0.00 0.00 2.87
3094 3200 5.143369 GCATATTTTCCCCAGGATTCTCTT 58.857 41.667 0.00 0.00 0.00 2.85
3095 3201 4.734266 GCATATTTTCCCCAGGATTCTCT 58.266 43.478 0.00 0.00 0.00 3.10
3120 3232 4.901785 ATTGTACTCCCTCCTCCTTCTA 57.098 45.455 0.00 0.00 0.00 2.10
3121 3233 3.786213 ATTGTACTCCCTCCTCCTTCT 57.214 47.619 0.00 0.00 0.00 2.85
3123 3235 3.523972 GGAAATTGTACTCCCTCCTCCTT 59.476 47.826 0.00 0.00 0.00 3.36
3142 3254 4.082523 CGCGAGGAAGCTGGGGAA 62.083 66.667 0.00 0.00 34.40 3.97
3192 3304 2.270352 TCGCTGACAAATGAAACCCT 57.730 45.000 0.00 0.00 0.00 4.34
3229 3341 0.315251 AAAAGCGAGGCAGAAAAGGC 59.685 50.000 0.00 0.00 0.00 4.35
3252 3375 4.298332 TCAAAAGCGAGGCAGAAAAATTC 58.702 39.130 0.00 0.00 0.00 2.17
3253 3376 4.320608 TCAAAAGCGAGGCAGAAAAATT 57.679 36.364 0.00 0.00 0.00 1.82
3255 3378 3.317711 TCATCAAAAGCGAGGCAGAAAAA 59.682 39.130 0.00 0.00 0.00 1.94
3284 3407 0.658897 GTTGACAAAACCGAGCCGAA 59.341 50.000 0.00 0.00 0.00 4.30
3285 3408 1.161563 GGTTGACAAAACCGAGCCGA 61.162 55.000 0.00 0.00 0.00 5.54
3286 3409 1.281656 GGTTGACAAAACCGAGCCG 59.718 57.895 0.00 0.00 0.00 5.52
3311 3434 1.373246 CGAAACCACGGGCGAAGTA 60.373 57.895 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.