AutoCloner

Multiple sequence alignment - TraesCS2D01G462600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G462600	chr2D	100.000	3718	0	0	1	3718	568463209	568466926	0.000000e+00	6866.0
1	TraesCS2D01G462600	chr2D	91.432	1669	122	12	1060	2723	568308542	568310194	0.000000e+00	2270.0
2	TraesCS2D01G462600	chr2D	96.684	1327	28	7	1464	2780	568357758	568359078	0.000000e+00	2193.0
3	TraesCS2D01G462600	chr2D	88.023	526	29	12	947	1472	568351800	568352291	3.200000e-165	592.0
4	TraesCS2D01G462600	chr2D	88.662	441	31	1	2283	2723	568423406	568423827	1.530000e-143	520.0
5	TraesCS2D01G462600	chr2D	91.200	375	28	3	2377	2748	568445054	568445426	4.290000e-139	505.0
6	TraesCS2D01G462600	chr2D	89.526	401	30	4	1067	1467	568439853	568440241	7.170000e-137	497.0
7	TraesCS2D01G462600	chr2D	91.786	280	20	2	148	425	215486913	215487191	1.620000e-103	387.0
8	TraesCS2D01G462600	chr2D	90.780	282	18	5	150	423	509897624	509897905	1.630000e-98	370.0
9	TraesCS2D01G462600	chr2D	84.071	113	18	0	1487	1599	23295068	23294956	3.930000e-20	110.0
10	TraesCS2D01G462600	chr2D	95.082	61	3	0	3658	3718	568445682	568445742	3.060000e-16	97.1
11	TraesCS2D01G462600	chr2B	90.588	1668	135	10	1061	2723	680862471	680864121	0.000000e+00	2191.0
12	TraesCS2D01G462600	chr2B	89.346	826	63	16	2774	3576	801188508	801189331	0.000000e+00	1014.0
13	TraesCS2D01G462600	chr2B	93.187	455	12	4	947	1401	681123263	681123698	0.000000e+00	651.0
14	TraesCS2D01G462600	chr2B	85.586	444	29	12	420	837	592770997	592770563	2.050000e-117	433.0
15	TraesCS2D01G462600	chr2B	94.667	150	8	0	1	150	592771140	592770991	2.230000e-57	233.0
16	TraesCS2D01G462600	chr2A	90.846	1300	112	5	1347	2640	707796419	707797717	0.000000e+00	1735.0
17	TraesCS2D01G462600	chr2A	94.250	1113	28	14	838	1949	707957402	707958479	0.000000e+00	1668.0
18	TraesCS2D01G462600	chr2A	95.202	521	25	0	2211	2731	707958479	707958999	0.000000e+00	824.0
19	TraesCS2D01G462600	chr2A	91.349	289	15	2	145	423	455343622	455343910	1.620000e-103	387.0
20	TraesCS2D01G462600	chr7A	81.926	1516	238	26	1211	2703	705547427	705545925	0.000000e+00	1249.0
21	TraesCS2D01G462600	chr3D	89.066	814	61	14	2769	3557	594542544	594543354	0.000000e+00	985.0
22	TraesCS2D01G462600	chr3D	93.418	471	29	2	3103	3573	115643439	115642971	0.000000e+00	697.0
23	TraesCS2D01G462600	chr3D	75.986	558	113	18	2092	2640	48349689	48350234	6.120000e-68	268.0
24	TraesCS2D01G462600	chr3D	74.043	235	48	11	2377	2603	130942863	130943092	2.380000e-12	84.2
25	TraesCS2D01G462600	chr7B	78.457	1504	273	34	1213	2702	730309995	730308529	0.000000e+00	935.0
26	TraesCS2D01G462600	chr7B	77.635	1243	225	35	1485	2700	704824973	704823757	0.000000e+00	706.0
27	TraesCS2D01G462600	chr7B	83.178	642	102	2	2090	2725	704826534	704825893	1.920000e-162	582.0
28	TraesCS2D01G462600	chr7B	90.094	424	30	3	414	837	687062370	687062781	1.170000e-149	540.0
29	TraesCS2D01G462600	chr7B	89.619	289	20	5	148	434	272321193	272320913	3.530000e-95	359.0
30	TraesCS2D01G462600	chr7B	75.705	745	155	21	1204	1935	704664172	704663441	2.120000e-92	350.0
31	TraesCS2D01G462600	chr7B	96.000	150	6	0	1	150	687062233	687062382	1.030000e-60	244.0
32	TraesCS2D01G462600	chr7B	82.609	138	23	1	700	837	740456229	740456093	1.810000e-23	121.0
33	TraesCS2D01G462600	chr6D	92.857	490	28	7	3079	3566	159505170	159504686	0.000000e+00	704.0
34	TraesCS2D01G462600	chr6D	92.308	338	23	2	2772	3106	17972237	17972574	9.340000e-131	477.0
35	TraesCS2D01G462600	chr6D	91.985	262	19	1	166	425	342932222	342931961	2.110000e-97	366.0
36	TraesCS2D01G462600	chr6D	91.923	260	19	1	166	423	297242248	297242507	2.730000e-96	363.0
37	TraesCS2D01G462600	chr6D	91.667	264	16	4	166	423	151119903	151119640	9.820000e-96	361.0
38	TraesCS2D01G462600	chr6D	92.157	255	18	1	171	423	354448003	354448257	3.530000e-95	359.0
39	TraesCS2D01G462600	chr6D	88.963	299	19	5	148	434	147626061	147625765	1.270000e-94	357.0
40	TraesCS2D01G462600	chr6D	89.825	285	19	2	149	423	172341926	172341642	1.270000e-94	357.0
41	TraesCS2D01G462600	chr6D	88.889	297	21	5	149	433	77411943	77411647	4.570000e-94	355.0
42	TraesCS2D01G462600	chr6D	89.199	287	19	3	149	423	345168665	345168379	7.640000e-92	348.0
43	TraesCS2D01G462600	chr6D	90.530	264	21	3	166	426	202566648	202566910	2.750000e-91	346.0
44	TraesCS2D01G462600	chr6D	76.102	590	127	12	2093	2675	143091407	143090825	2.810000e-76	296.0
45	TraesCS2D01G462600	chr7D	91.585	511	39	4	3079	3587	190131493	190130985	0.000000e+00	702.0
46	TraesCS2D01G462600	chr7D	92.449	490	30	6	3079	3566	454092767	454093251	0.000000e+00	693.0
47	TraesCS2D01G462600	chr7D	91.784	499	33	8	3079	3573	438545915	438546409	0.000000e+00	688.0
48	TraesCS2D01G462600	chr7D	81.990	794	138	4	1205	1996	613767334	613766544	0.000000e+00	669.0
49	TraesCS2D01G462600	chr7D	91.404	349	24	6	2757	3103	561873385	561873729	1.210000e-129	473.0
50	TraesCS2D01G462600	chr7D	84.472	483	68	3	2227	2703	613765894	613765413	1.560000e-128	470.0
51	TraesCS2D01G462600	chr7D	90.028	361	32	4	2769	3125	410554887	410554527	7.270000e-127	464.0
52	TraesCS2D01G462600	chr7D	90.747	281	18	3	148	426	276254907	276255181	5.870000e-98	368.0
53	TraesCS2D01G462600	chrUn	92.434	489	33	4	3079	3565	10748600	10749086	0.000000e+00	695.0
54	TraesCS2D01G462600	chrUn	92.434	489	33	4	3079	3565	10764228	10764714	0.000000e+00	695.0
55	TraesCS2D01G462600	chrUn	90.661	257	21	2	171	425	90076531	90076786	4.600000e-89	339.0
56	TraesCS2D01G462600	chrUn	90.204	245	22	1	184	426	334937582	334937826	5.990000e-83	318.0
57	TraesCS2D01G462600	chrUn	89.200	250	25	1	184	431	91443500	91443749	1.000000e-80	311.0
58	TraesCS2D01G462600	chrUn	87.143	280	29	3	148	425	96182204	96182478	1.000000e-80	311.0
59	TraesCS2D01G462600	chrUn	89.873	237	18	4	193	423	24955435	24955199	2.170000e-77	300.0
60	TraesCS2D01G462600	chrUn	86.170	282	25	7	149	427	36485597	36485867	3.630000e-75	292.0
61	TraesCS2D01G462600	chrUn	86.381	257	33	1	166	420	93661424	93661168	2.830000e-71	279.0
62	TraesCS2D01G462600	chrUn	88.341	223	18	3	203	423	5388560	5388344	1.020000e-65	261.0
63	TraesCS2D01G462600	chrUn	87.273	220	24	2	210	425	86353465	86353246	7.970000e-62	248.0
64	TraesCS2D01G462600	chr3B	92.261	491	34	4	3079	3566	571135269	571135758	0.000000e+00	693.0
65	TraesCS2D01G462600	chr5D	91.816	501	34	6	3079	3577	168013940	168013445	0.000000e+00	691.0
66	TraesCS2D01G462600	chr5D	92.658	395	19	2	420	814	543634824	543634440	9.020000e-156	560.0
67	TraesCS2D01G462600	chr5D	92.749	331	21	2	2779	3106	272356444	272356114	3.360000e-130	475.0
68	TraesCS2D01G462600	chr5D	90.378	291	18	2	148	428	108405713	108405423	1.260000e-99	374.0
69	TraesCS2D01G462600	chr5D	97.333	150	4	0	1	150	543634967	543634818	4.770000e-64	255.0
70	TraesCS2D01G462600	chr5A	91.274	424	26	3	414	837	11789377	11789789	5.390000e-158	568.0
71	TraesCS2D01G462600	chr5A	94.000	150	9	0	1	150	11789240	11789389	1.040000e-55	228.0
72	TraesCS2D01G462600	chr5A	89.222	167	11	1	671	837	355175122	355175281	6.300000e-48	202.0
73	TraesCS2D01G462600	chr5B	91.496	341	25	3	2768	3106	12641423	12641761	2.020000e-127	466.0
74	TraesCS2D01G462600	chr5B	91.520	342	23	6	2773	3110	586341856	586341517	2.020000e-127	466.0
75	TraesCS2D01G462600	chr1D	91.691	337	26	2	2772	3107	417194618	417194953	2.020000e-127	466.0
76	TraesCS2D01G462600	chr1D	77.389	743	140	19	1208	1936	337217318	337218046	2.070000e-112	416.0
77	TraesCS2D01G462600	chr1D	92.776	263	17	1	166	426	245785305	245785043	2.710000e-101	379.0
78	TraesCS2D01G462600	chr1D	90.909	286	14	4	149	423	29851688	29851404	1.260000e-99	374.0
79	TraesCS2D01G462600	chr1D	91.103	281	17	3	148	426	121098779	121098505	1.260000e-99	374.0
80	TraesCS2D01G462600	chr4D	86.256	422	29	11	414	835	44037746	44038138	7.380000e-117	431.0
81	TraesCS2D01G462600	chr4D	92.395	263	18	1	166	426	104582971	104583233	1.260000e-99	374.0
82	TraesCS2D01G462600	chr4D	92.278	259	18	1	170	426	131061355	131061613	2.110000e-97	366.0
83	TraesCS2D01G462600	chr4D	90.391	281	19	3	148	426	149660092	149659818	2.730000e-96	363.0
84	TraesCS2D01G462600	chr4D	91.603	262	19	2	166	425	25663279	25663539	3.530000e-95	359.0
85	TraesCS2D01G462600	chr4D	90.036	281	20	3	148	426	235278569	235278295	1.270000e-94	357.0
86	TraesCS2D01G462600	chr4D	90.036	281	20	3	148	426	305422288	305422562	1.270000e-94	357.0
87	TraesCS2D01G462600	chr4D	90.511	274	18	3	148	419	454176272	454176005	4.570000e-94	355.0
88	TraesCS2D01G462600	chr4D	95.333	150	7	0	1	150	44037609	44037758	4.800000e-59	239.0
89	TraesCS2D01G462600	chr4D	92.308	78	5	1	463	539	353521386	353521463	3.930000e-20	110.0
90	TraesCS2D01G462600	chr1A	91.379	290	13	4	148	426	154329637	154329925	1.620000e-103	387.0
91	TraesCS2D01G462600	chr1A	76.431	751	142	25	1208	1936	436421329	436422066	1.260000e-99	374.0
92	TraesCS2D01G462600	chr1A	90.975	277	18	2	149	423	370888997	370889268	2.110000e-97	366.0
93	TraesCS2D01G462600	chr6A	90.975	277	18	2	149	423	55294825	55294554	2.110000e-97	366.0
94	TraesCS2D01G462600	chr6A	90.391	281	19	3	148	426	353765995	353766269	2.730000e-96	363.0
95	TraesCS2D01G462600	chr6A	75.635	591	130	12	2093	2676	188354006	188353423	7.860000e-72	281.0
96	TraesCS2D01G462600	chr6B	76.650	591	124	12	2093	2676	255072456	255071873	7.750000e-82	315.0
97	TraesCS2D01G462600	chr3A	74.370	238	49	11	2384	2612	143023105	143023339	1.420000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G462600	chr2D	568463209	568466926	3717	False	6866.00	6866	100.0000	1	3718	1	chr2D.!!$F8	3717
1	TraesCS2D01G462600	chr2D	568308542	568310194	1652	False	2270.00	2270	91.4320	1060	2723	1	chr2D.!!$F3	1663
2	TraesCS2D01G462600	chr2D	568357758	568359078	1320	False	2193.00	2193	96.6840	1464	2780	1	chr2D.!!$F5	1316
3	TraesCS2D01G462600	chr2D	568445054	568445742	688	False	301.05	505	93.1410	2377	3718	2	chr2D.!!$F9	1341
4	TraesCS2D01G462600	chr2B	680862471	680864121	1650	False	2191.00	2191	90.5880	1061	2723	1	chr2B.!!$F1	1662
5	TraesCS2D01G462600	chr2B	801188508	801189331	823	False	1014.00	1014	89.3460	2774	3576	1	chr2B.!!$F3	802
6	TraesCS2D01G462600	chr2B	592770563	592771140	577	True	333.00	433	90.1265	1	837	2	chr2B.!!$R1	836
7	TraesCS2D01G462600	chr2A	707796419	707797717	1298	False	1735.00	1735	90.8460	1347	2640	1	chr2A.!!$F2	1293
8	TraesCS2D01G462600	chr2A	707957402	707958999	1597	False	1246.00	1668	94.7260	838	2731	2	chr2A.!!$F3	1893
9	TraesCS2D01G462600	chr7A	705545925	705547427	1502	True	1249.00	1249	81.9260	1211	2703	1	chr7A.!!$R1	1492
10	TraesCS2D01G462600	chr3D	594542544	594543354	810	False	985.00	985	89.0660	2769	3557	1	chr3D.!!$F3	788
11	TraesCS2D01G462600	chr3D	48349689	48350234	545	False	268.00	268	75.9860	2092	2640	1	chr3D.!!$F1	548
12	TraesCS2D01G462600	chr7B	730308529	730309995	1466	True	935.00	935	78.4570	1213	2702	1	chr7B.!!$R3	1489
13	TraesCS2D01G462600	chr7B	704823757	704826534	2777	True	644.00	706	80.4065	1485	2725	2	chr7B.!!$R5	1240
14	TraesCS2D01G462600	chr7B	687062233	687062781	548	False	392.00	540	93.0470	1	837	2	chr7B.!!$F1	836
15	TraesCS2D01G462600	chr7B	704663441	704664172	731	True	350.00	350	75.7050	1204	1935	1	chr7B.!!$R2	731
16	TraesCS2D01G462600	chr6D	143090825	143091407	582	True	296.00	296	76.1020	2093	2675	1	chr6D.!!$R2	582
17	TraesCS2D01G462600	chr7D	190130985	190131493	508	True	702.00	702	91.5850	3079	3587	1	chr7D.!!$R1	508
18	TraesCS2D01G462600	chr7D	613765413	613767334	1921	True	569.50	669	83.2310	1205	2703	2	chr7D.!!$R3	1498
19	TraesCS2D01G462600	chr5D	543634440	543634967	527	True	407.50	560	94.9955	1	814	2	chr5D.!!$R4	813
20	TraesCS2D01G462600	chr5A	11789240	11789789	549	False	398.00	568	92.6370	1	837	2	chr5A.!!$F2	836
21	TraesCS2D01G462600	chr1D	337217318	337218046	728	False	416.00	416	77.3890	1208	1936	1	chr1D.!!$F1	728
22	TraesCS2D01G462600	chr4D	44037609	44038138	529	False	335.00	431	90.7945	1	835	2	chr4D.!!$F6	834
23	TraesCS2D01G462600	chr1A	436421329	436422066	737	False	374.00	374	76.4310	1208	1936	1	chr1A.!!$F3	728
24	TraesCS2D01G462600	chr6A	188353423	188354006	583	True	281.00	281	75.6350	2093	2676	1	chr6A.!!$R2	583
25	TraesCS2D01G462600	chr6B	255071873	255072456	583	True	315.00	315	76.6500	2093	2676	1	chr6B.!!$R1	583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
787	815	0.179132	TGCATCCACATGATTTGCGC	60.179	50.0	0.0	0.0	30.57	6.09	F
1098	1126	0.243907	TGGAGTCGTTGCAGCTCTAC	59.756	55.0	0.0	0.0	0.00	2.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2085	2197	1.471676	GGCGAACATGTCCTGTAGGAG	60.472	57.143	0.0	0.0	46.49	3.69	R
2813	3370	1.679153	TGAAGGCGTATGAGCGATGTA	59.321	47.619	0.0	0.0	38.18	2.29	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Show entries

Search:

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
144	145	4.104086	TCACTATGAATGAAGTGGGAGGT	58.896	43.478	2.91	0.00	42.72	3.85
145	146	4.162320	TCACTATGAATGAAGTGGGAGGTC	59.838	45.833	2.91	0.00	42.72	3.85
146	147	2.698855	ATGAATGAAGTGGGAGGTCG	57.301	50.000	0.00	0.00	0.00	4.79
147	148	1.639722	TGAATGAAGTGGGAGGTCGA	58.360	50.000	0.00	0.00	0.00	4.20
148	149	1.974957	TGAATGAAGTGGGAGGTCGAA	59.025	47.619	0.00	0.00	0.00	3.71
149	150	2.028112	TGAATGAAGTGGGAGGTCGAAG	60.028	50.000	0.00	0.00	0.00	3.79
150	151	1.938585	ATGAAGTGGGAGGTCGAAGA	58.061	50.000	0.00	0.00	0.00	2.87
163	164	2.672961	TCGAAGACTAGCCACAATGG	57.327	50.000	0.00	0.00	41.55	3.16
164	165	1.207089	TCGAAGACTAGCCACAATGGG	59.793	52.381	0.00	0.00	38.19	4.00
175	176	4.748277	GCCACAATGGGTAGTCTAGTAA	57.252	45.455	0.00	0.00	38.19	2.24
177	178	4.081309	GCCACAATGGGTAGTCTAGTAACA	60.081	45.833	0.00	0.00	38.19	2.41
178	179	5.396436	GCCACAATGGGTAGTCTAGTAACAT	60.396	44.000	0.00	0.00	38.19	2.71
180	181	5.523916	CACAATGGGTAGTCTAGTAACATGC	59.476	44.000	0.00	0.00	0.00	4.06
181	182	5.188948	ACAATGGGTAGTCTAGTAACATGCA	59.811	40.000	0.00	0.00	0.00	3.96
182	183	6.126768	ACAATGGGTAGTCTAGTAACATGCAT	60.127	38.462	0.00	0.00	0.00	3.96
183	184	7.070696	ACAATGGGTAGTCTAGTAACATGCATA	59.929	37.037	0.00	0.00	0.00	3.14
184	185	7.798710	ATGGGTAGTCTAGTAACATGCATAT	57.201	36.000	0.00	0.00	0.00	1.78
185	186	6.993079	TGGGTAGTCTAGTAACATGCATATG	58.007	40.000	0.00	0.00	40.24	1.78
218	219	9.850198	GTCTATATTACTACCTCTATAGTGGGG	57.150	40.741	21.82	16.35	36.09	4.96
219	220	9.809705	TCTATATTACTACCTCTATAGTGGGGA	57.190	37.037	21.82	11.28	36.09	4.81
221	222	6.800223	ATTACTACCTCTATAGTGGGGAGT	57.200	41.667	24.72	24.72	36.09	3.85
222	223	7.901804	ATTACTACCTCTATAGTGGGGAGTA	57.098	40.000	23.32	23.32	36.09	2.59
223	224	7.712142	TTACTACCTCTATAGTGGGGAGTAA	57.288	40.000	28.26	28.26	38.03	2.24
225	226	3.830121	ACCTCTATAGTGGGGAGTAACG	58.170	50.000	21.82	0.00	33.22	3.18
226	227	3.203934	ACCTCTATAGTGGGGAGTAACGT	59.796	47.826	21.82	0.00	33.22	3.99

Showing 1 to 25 of 186 entries

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Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	4.148563	GCATTCTGCAGAGAAGCATATG	57.851	45.455	23.71	19.61	44.68	1.78
57	58	8.422566	ACTAATTAAGAGTACCCTATGAACAGC	58.577	37.037	0.00	0.00	0.00	4.40
144	145	1.207089	CCCATTGTGGCTAGTCTTCGA	59.793	52.381	0.00	0.00	35.79	3.71
145	146	1.066143	ACCCATTGTGGCTAGTCTTCG	60.066	52.381	0.00	0.00	35.79	3.79
146	147	2.789409	ACCCATTGTGGCTAGTCTTC	57.211	50.000	0.00	0.00	35.79	2.87
147	148	3.182152	ACTACCCATTGTGGCTAGTCTT	58.818	45.455	0.00	0.00	35.79	3.01
148	149	2.766828	GACTACCCATTGTGGCTAGTCT	59.233	50.000	18.00	0.00	36.78	3.24
149	150	2.766828	AGACTACCCATTGTGGCTAGTC	59.233	50.000	17.75	17.75	38.24	2.59
150	151	2.834113	AGACTACCCATTGTGGCTAGT	58.166	47.619	4.13	4.13	35.79	2.57
152	153	3.990369	ACTAGACTACCCATTGTGGCTA	58.010	45.455	0.00	0.00	35.79	3.93
153	154	2.834113	ACTAGACTACCCATTGTGGCT	58.166	47.619	0.00	0.00	35.79	4.75
154	155	4.081309	TGTTACTAGACTACCCATTGTGGC	60.081	45.833	0.00	0.00	35.79	5.01
155	156	5.670792	TGTTACTAGACTACCCATTGTGG	57.329	43.478	0.00	0.00	37.25	4.17
157	158	5.188948	TGCATGTTACTAGACTACCCATTGT	59.811	40.000	0.00	0.00	0.00	2.71
158	159	5.670485	TGCATGTTACTAGACTACCCATTG	58.330	41.667	0.00	0.00	0.00	2.82
160	161	7.235606	ACATATGCATGTTACTAGACTACCCAT	59.764	37.037	10.16	0.00	42.98	4.00
161	162	6.553476	ACATATGCATGTTACTAGACTACCCA	59.447	38.462	10.16	0.00	42.98	4.51
162	163	6.994221	ACATATGCATGTTACTAGACTACCC	58.006	40.000	10.16	0.00	42.98	3.69
192	193	9.850198	CCCCACTATAGAGGTAGTAATATAGAC	57.150	40.741	14.29	0.00	33.29	2.59
193	194	9.809705	TCCCCACTATAGAGGTAGTAATATAGA	57.190	37.037	14.29	0.00	33.29	1.98
196	197	8.479601	ACTCCCCACTATAGAGGTAGTAATAT	57.520	38.462	14.29	0.00	33.29	1.28
197	198	7.901804	ACTCCCCACTATAGAGGTAGTAATA	57.098	40.000	14.29	0.00	33.29	0.98
198	199	6.800223	ACTCCCCACTATAGAGGTAGTAAT	57.200	41.667	14.29	0.00	33.29	1.89
199	200	7.521669	GTTACTCCCCACTATAGAGGTAGTAA	58.478	42.308	23.15	23.15	33.91	2.24
200	201	6.239714	CGTTACTCCCCACTATAGAGGTAGTA	60.240	46.154	17.42	17.42	33.29	1.82

Showing 1 to 25 of 218 entries

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Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.