Multiple sequence alignment - TraesCS2D01G462500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G462500 chr2D 100.000 3452 0 0 1 3452 568407975 568411426 0.000000e+00 6375.0
1 TraesCS2D01G462500 chr2D 95.249 1810 67 11 902 2694 568726006 568727813 0.000000e+00 2848.0
2 TraesCS2D01G462500 chr2D 97.580 909 14 4 1 906 568721482 568722385 0.000000e+00 1550.0
3 TraesCS2D01G462500 chr2D 86.399 647 56 17 6 634 100752929 100752297 0.000000e+00 678.0
4 TraesCS2D01G462500 chr2D 90.437 366 19 3 2787 3136 151981405 151981040 5.220000e-128 468.0
5 TraesCS2D01G462500 chr2D 92.771 83 5 1 799 880 100752084 100752002 6.050000e-23 119.0
6 TraesCS2D01G462500 chr2D 92.982 57 4 0 2730 2786 643737153 643737209 2.210000e-12 84.2
7 TraesCS2D01G462500 chr2D 95.652 46 2 0 681 726 100752366 100752411 1.330000e-09 75.0
8 TraesCS2D01G462500 chr2D 92.500 40 1 2 694 733 568722046 568722009 4.810000e-04 56.5
9 TraesCS2D01G462500 chr2A 95.538 1681 54 4 1058 2733 707988108 707989772 0.000000e+00 2669.0
10 TraesCS2D01G462500 chr2A 81.254 1419 202 35 1213 2597 763334033 763332645 0.000000e+00 1088.0
11 TraesCS2D01G462500 chr2A 90.598 351 28 4 2787 3134 202068684 202069032 8.730000e-126 460.0
12 TraesCS2D01G462500 chr2A 90.517 232 10 6 3231 3452 707989765 707989994 2.600000e-76 296.0
13 TraesCS2D01G462500 chr2A 92.174 115 7 2 3135 3248 270497886 270497773 9.910000e-36 161.0
14 TraesCS2D01G462500 chr2A 100.000 72 0 0 942 1013 707988047 707988118 2.160000e-27 134.0
15 TraesCS2D01G462500 chr2A 90.000 70 5 2 2713 2781 628584964 628585032 4.750000e-14 89.8
16 TraesCS2D01G462500 chr2A 100.000 45 0 0 1015 1059 684436613 684436657 2.210000e-12 84.2
17 TraesCS2D01G462500 chr2A 100.000 44 0 0 1015 1058 651085596 651085639 7.940000e-12 82.4
18 TraesCS2D01G462500 chr2B 93.724 1657 84 11 1058 2695 681217799 681219454 0.000000e+00 2466.0
19 TraesCS2D01G462500 chr2B 82.140 1411 200 31 1213 2598 797539241 797537858 0.000000e+00 1162.0
20 TraesCS2D01G462500 chr2B 83.051 1180 173 17 1435 2599 797671999 797673166 0.000000e+00 1046.0
21 TraesCS2D01G462500 chr2B 94.168 463 18 6 1 457 681216460 681216919 0.000000e+00 697.0
22 TraesCS2D01G462500 chr2B 85.671 663 92 3 2073 2733 681221403 681222064 0.000000e+00 695.0
23 TraesCS2D01G462500 chr2B 85.290 673 68 16 1 654 3269087 3269747 0.000000e+00 665.0
24 TraesCS2D01G462500 chr2B 93.084 347 13 4 456 792 681217080 681217425 6.650000e-137 497.0
25 TraesCS2D01G462500 chr2B 85.630 341 26 7 2797 3134 528818901 528819221 1.530000e-88 337.0
26 TraesCS2D01G462500 chr2B 91.813 171 10 4 3238 3404 681222063 681222233 5.760000e-58 235.0
27 TraesCS2D01G462500 chr2B 94.074 135 7 1 799 933 681217510 681217643 1.620000e-48 204.0
28 TraesCS2D01G462500 chr2B 91.270 126 10 1 674 799 3269733 3269857 1.650000e-38 171.0
29 TraesCS2D01G462500 chr2B 93.636 110 6 1 3135 3243 563463073 563462964 2.760000e-36 163.0
30 TraesCS2D01G462500 chr2B 94.444 72 4 0 942 1013 681217738 681217809 1.010000e-20 111.0
31 TraesCS2D01G462500 chr2B 92.500 40 1 2 694 733 681217189 681217152 4.810000e-04 56.5
32 TraesCS2D01G462500 chr5D 78.959 1383 207 49 1223 2552 513663484 513662133 0.000000e+00 865.0
33 TraesCS2D01G462500 chr5D 94.495 109 5 1 3135 3242 539915959 539915851 2.130000e-37 167.0
34 TraesCS2D01G462500 chr3D 86.418 670 65 14 1 654 346923392 346924051 0.000000e+00 710.0
35 TraesCS2D01G462500 chr3D 90.028 351 34 1 2786 3136 17541607 17541258 1.460000e-123 453.0
36 TraesCS2D01G462500 chr3D 91.935 124 10 0 676 799 346924039 346924162 1.270000e-39 174.0
37 TraesCS2D01G462500 chr3D 78.404 213 39 7 2263 2471 387354341 387354132 7.770000e-27 132.0
38 TraesCS2D01G462500 chr3D 78.571 154 29 4 2172 2323 609364825 609364976 7.880000e-17 99.0
39 TraesCS2D01G462500 chr3D 97.059 34 1 0 726 759 346923990 346924023 1.340000e-04 58.4
40 TraesCS2D01G462500 chr7A 85.307 667 66 13 1 650 577767280 577766629 0.000000e+00 660.0
41 TraesCS2D01G462500 chr7A 90.368 353 30 2 2788 3138 15693857 15693507 8.730000e-126 460.0
42 TraesCS2D01G462500 chr7A 91.803 122 10 0 678 799 577766639 577766518 1.650000e-38 171.0
43 TraesCS2D01G462500 chr7A 92.241 116 8 1 3135 3249 206712065 206711950 2.760000e-36 163.0
44 TraesCS2D01G462500 chr7A 84.810 79 10 2 2718 2794 105168373 105168295 1.030000e-10 78.7
45 TraesCS2D01G462500 chr7A 97.561 41 1 0 681 721 577766712 577766752 1.720000e-08 71.3
46 TraesCS2D01G462500 chr5A 85.135 666 68 12 1 650 618369607 618370257 0.000000e+00 652.0
47 TraesCS2D01G462500 chr5A 92.453 53 2 2 681 733 618370174 618370124 1.330000e-09 75.0
48 TraesCS2D01G462500 chr4A 84.776 670 67 14 1 650 586923033 586923687 1.040000e-179 640.0
49 TraesCS2D01G462500 chr4A 86.857 350 40 4 2789 3134 511227088 511227435 1.500000e-103 387.0
50 TraesCS2D01G462500 chr4A 92.453 53 2 2 681 733 586923604 586923554 1.330000e-09 75.0
51 TraesCS2D01G462500 chr3B 83.383 668 70 19 1 634 579748507 579749167 6.420000e-162 580.0
52 TraesCS2D01G462500 chr3B 94.495 109 5 1 3135 3242 723496942 723496834 2.130000e-37 167.0
53 TraesCS2D01G462500 chr3B 84.337 83 10 3 2710 2792 465344797 465344718 1.030000e-10 78.7
54 TraesCS2D01G462500 chr3A 86.000 500 45 14 150 634 620519886 620519397 2.380000e-141 512.0
55 TraesCS2D01G462500 chr3A 92.816 348 24 1 2789 3136 661837624 661837278 1.430000e-138 503.0
56 TraesCS2D01G462500 chr3A 76.136 968 195 32 1455 2404 508520396 508521345 3.120000e-130 475.0
57 TraesCS2D01G462500 chr3A 78.873 213 38 7 2263 2471 508542279 508542070 1.670000e-28 137.0
58 TraesCS2D01G462500 chr3A 89.394 66 6 1 2721 2786 568001187 568001251 7.940000e-12 82.4
59 TraesCS2D01G462500 chr6B 89.884 346 33 1 2791 3134 684979193 684978848 8.790000e-121 444.0
60 TraesCS2D01G462500 chr6B 93.043 115 6 2 3135 3248 601199541 601199428 2.130000e-37 167.0
61 TraesCS2D01G462500 chr6B 92.174 115 8 1 3135 3248 112745628 112745514 9.910000e-36 161.0
62 TraesCS2D01G462500 chr7D 89.655 348 32 3 2789 3134 201833167 201832822 1.140000e-119 440.0
63 TraesCS2D01G462500 chr7D 92.453 159 10 1 89 247 78253496 78253652 3.470000e-55 226.0
64 TraesCS2D01G462500 chr7D 93.220 59 4 0 2731 2789 94013872 94013814 1.710000e-13 87.9
65 TraesCS2D01G462500 chr7B 89.595 346 30 6 2795 3136 608335126 608334783 5.290000e-118 435.0
66 TraesCS2D01G462500 chr7B 93.636 110 5 2 3140 3248 480523378 480523486 2.760000e-36 163.0
67 TraesCS2D01G462500 chr7B 93.220 59 4 0 2731 2789 716308909 716308851 1.710000e-13 87.9
68 TraesCS2D01G462500 chr4D 89.143 350 31 6 1 348 430799085 430798741 2.460000e-116 429.0
69 TraesCS2D01G462500 chr1B 92.174 115 8 1 3135 3248 108587811 108587925 9.910000e-36 161.0
70 TraesCS2D01G462500 chr1B 96.364 55 2 0 2735 2789 460627884 460627830 1.320000e-14 91.6
71 TraesCS2D01G462500 chr1B 94.643 56 3 0 2731 2786 51968677 51968732 1.710000e-13 87.9
72 TraesCS2D01G462500 chr1D 74.453 411 71 28 1968 2366 482242690 482242302 2.780000e-31 147.0
73 TraesCS2D01G462500 chr1A 76.772 254 45 13 2150 2396 578940161 578939915 2.800000e-26 130.0
74 TraesCS2D01G462500 chr6A 83.784 74 10 2 2735 2807 609818926 609818998 6.180000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G462500 chr2D 568407975 568411426 3451 False 6375.000000 6375 100.000000 1 3452 1 chr2D.!!$F2 3451
1 TraesCS2D01G462500 chr2D 568721482 568727813 6331 False 2199.000000 2848 96.414500 1 2694 2 chr2D.!!$F4 2693
2 TraesCS2D01G462500 chr2D 100752002 100752929 927 True 398.500000 678 89.585000 6 880 2 chr2D.!!$R3 874
3 TraesCS2D01G462500 chr2A 763332645 763334033 1388 True 1088.000000 1088 81.254000 1213 2597 1 chr2A.!!$R2 1384
4 TraesCS2D01G462500 chr2A 707988047 707989994 1947 False 1033.000000 2669 95.351667 942 3452 3 chr2A.!!$F5 2510
5 TraesCS2D01G462500 chr2B 797537858 797539241 1383 True 1162.000000 1162 82.140000 1213 2598 1 chr2B.!!$R3 1385
6 TraesCS2D01G462500 chr2B 797671999 797673166 1167 False 1046.000000 1046 83.051000 1435 2599 1 chr2B.!!$F2 1164
7 TraesCS2D01G462500 chr2B 681216460 681222233 5773 False 700.714286 2466 92.425429 1 3404 7 chr2B.!!$F4 3403
8 TraesCS2D01G462500 chr2B 3269087 3269857 770 False 418.000000 665 88.280000 1 799 2 chr2B.!!$F3 798
9 TraesCS2D01G462500 chr5D 513662133 513663484 1351 True 865.000000 865 78.959000 1223 2552 1 chr5D.!!$R1 1329
10 TraesCS2D01G462500 chr3D 346923392 346924162 770 False 314.133333 710 91.804000 1 799 3 chr3D.!!$F2 798
11 TraesCS2D01G462500 chr7A 577766518 577767280 762 True 415.500000 660 88.555000 1 799 2 chr7A.!!$R4 798
12 TraesCS2D01G462500 chr5A 618369607 618370257 650 False 652.000000 652 85.135000 1 650 1 chr5A.!!$F1 649
13 TraesCS2D01G462500 chr4A 586923033 586923687 654 False 640.000000 640 84.776000 1 650 1 chr4A.!!$F2 649
14 TraesCS2D01G462500 chr3B 579748507 579749167 660 False 580.000000 580 83.383000 1 634 1 chr3B.!!$F1 633
15 TraesCS2D01G462500 chr3A 508520396 508521345 949 False 475.000000 475 76.136000 1455 2404 1 chr3A.!!$F1 949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 1204 0.912487 ATTCCGAAGTGGGGGTGCTA 60.912 55.0 0.0 0.0 38.76 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 6698 0.041312 CGGCGTTTTTCCACTGTCTG 60.041 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
861 1204 0.912487 ATTCCGAAGTGGGGGTGCTA 60.912 55.000 0.00 0.00 38.76 3.49
1091 5146 1.202348 CGAGTTGGGGAAAAATCTGCC 59.798 52.381 0.00 0.00 0.00 4.85
2229 6353 4.634703 ATGTCGTGGGTGCCGCAA 62.635 61.111 0.00 0.00 32.88 4.85
2436 6560 0.486879 AAATGGTGGAAGCCCAGGAA 59.513 50.000 0.00 0.00 44.55 3.36
2546 6671 2.338620 CTGGACGACGCTGGTGAA 59.661 61.111 0.00 0.00 0.00 3.18
2561 6686 2.548057 TGGTGAATCAAGAACTGCGTTC 59.452 45.455 11.79 11.79 42.25 3.95
2571 6696 0.107831 AACTGCGTTCCTGCACCTTA 59.892 50.000 0.00 0.00 40.62 2.69
2573 6698 1.298859 CTGCGTTCCTGCACCTTACC 61.299 60.000 0.00 0.00 40.62 2.85
2597 9304 1.009335 GTGGAAAAACGCCGACCAC 60.009 57.895 0.00 0.00 42.83 4.16
2643 9350 7.894376 ATTTCTTTCAAATGTTAGTGCCATG 57.106 32.000 0.00 0.00 0.00 3.66
2657 9364 4.280819 AGTGCCATGTAATAAGTGCCATT 58.719 39.130 0.00 0.00 0.00 3.16
2725 9433 9.630098 ATTCAAGCTTTACTGTTCATGTATTTG 57.370 29.630 0.00 0.00 0.00 2.32
2731 9439 8.721478 GCTTTACTGTTCATGTATTTGAGAGAA 58.279 33.333 0.00 0.00 0.00 2.87
2733 9441 8.547967 TTACTGTTCATGTATTTGAGAGAACC 57.452 34.615 0.00 0.00 35.68 3.62
2734 9442 6.533730 ACTGTTCATGTATTTGAGAGAACCA 58.466 36.000 0.00 0.00 35.68 3.67
2735 9443 6.428159 ACTGTTCATGTATTTGAGAGAACCAC 59.572 38.462 0.00 0.00 35.68 4.16
2736 9444 6.533730 TGTTCATGTATTTGAGAGAACCACT 58.466 36.000 0.00 0.00 35.68 4.00
2737 9445 6.650807 TGTTCATGTATTTGAGAGAACCACTC 59.349 38.462 0.00 0.00 45.22 3.51
2738 9446 5.734720 TCATGTATTTGAGAGAACCACTCC 58.265 41.667 0.00 0.00 45.96 3.85
2739 9447 4.553330 TGTATTTGAGAGAACCACTCCC 57.447 45.455 0.00 0.00 45.96 4.30
2740 9448 4.168101 TGTATTTGAGAGAACCACTCCCT 58.832 43.478 0.00 0.00 45.96 4.20
2741 9449 3.990959 ATTTGAGAGAACCACTCCCTC 57.009 47.619 0.00 0.00 45.96 4.30
2742 9450 1.645710 TTGAGAGAACCACTCCCTCC 58.354 55.000 0.00 0.00 45.96 4.30
2743 9451 0.612174 TGAGAGAACCACTCCCTCCG 60.612 60.000 0.00 0.00 45.96 4.63
2744 9452 0.612453 GAGAGAACCACTCCCTCCGT 60.612 60.000 0.00 0.00 45.96 4.69
2745 9453 0.178929 AGAGAACCACTCCCTCCGTT 60.179 55.000 0.00 0.00 45.96 4.44
2746 9454 0.246910 GAGAACCACTCCCTCCGTTC 59.753 60.000 0.00 0.00 39.53 3.95
2747 9455 1.192803 AGAACCACTCCCTCCGTTCC 61.193 60.000 0.00 0.00 36.16 3.62
2748 9456 1.152096 AACCACTCCCTCCGTTCCT 60.152 57.895 0.00 0.00 0.00 3.36
2749 9457 0.115745 AACCACTCCCTCCGTTCCTA 59.884 55.000 0.00 0.00 0.00 2.94
2750 9458 0.115745 ACCACTCCCTCCGTTCCTAA 59.884 55.000 0.00 0.00 0.00 2.69
2751 9459 1.272807 CCACTCCCTCCGTTCCTAAA 58.727 55.000 0.00 0.00 0.00 1.85
2752 9460 1.838077 CCACTCCCTCCGTTCCTAAAT 59.162 52.381 0.00 0.00 0.00 1.40
2753 9461 3.036091 CCACTCCCTCCGTTCCTAAATA 58.964 50.000 0.00 0.00 0.00 1.40
2754 9462 3.646637 CCACTCCCTCCGTTCCTAAATAT 59.353 47.826 0.00 0.00 0.00 1.28
2755 9463 4.836736 CCACTCCCTCCGTTCCTAAATATA 59.163 45.833 0.00 0.00 0.00 0.86
2756 9464 5.306160 CCACTCCCTCCGTTCCTAAATATAA 59.694 44.000 0.00 0.00 0.00 0.98
2757 9465 6.456501 CACTCCCTCCGTTCCTAAATATAAG 58.543 44.000 0.00 0.00 0.00 1.73
2758 9466 6.041751 CACTCCCTCCGTTCCTAAATATAAGT 59.958 42.308 0.00 0.00 0.00 2.24
2759 9467 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2760 9468 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2761 9469 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2762 9470 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2763 9471 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2764 9472 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2781 9489 9.453572 AAGTCTTTGTAGAGATTGCATTATGAA 57.546 29.630 0.00 0.00 0.00 2.57
2782 9490 9.624373 AGTCTTTGTAGAGATTGCATTATGAAT 57.376 29.630 0.00 0.00 0.00 2.57
2783 9491 9.875675 GTCTTTGTAGAGATTGCATTATGAATC 57.124 33.333 0.00 3.24 0.00 2.52
2784 9492 9.617523 TCTTTGTAGAGATTGCATTATGAATCA 57.382 29.630 14.75 0.00 31.98 2.57
2785 9493 9.661187 CTTTGTAGAGATTGCATTATGAATCAC 57.339 33.333 14.75 10.73 31.98 3.06
2786 9494 8.969260 TTGTAGAGATTGCATTATGAATCACT 57.031 30.769 15.20 15.20 34.90 3.41
2787 9495 8.969260 TGTAGAGATTGCATTATGAATCACTT 57.031 30.769 15.67 7.43 33.35 3.16
2791 9499 9.491675 AGAGATTGCATTATGAATCACTTAGAG 57.508 33.333 14.75 0.00 28.64 2.43
2792 9500 8.097078 AGATTGCATTATGAATCACTTAGAGC 57.903 34.615 14.75 0.00 31.98 4.09
2793 9501 7.718314 AGATTGCATTATGAATCACTTAGAGCA 59.282 33.333 14.75 0.00 31.98 4.26
2794 9502 7.812690 TTGCATTATGAATCACTTAGAGCAT 57.187 32.000 0.00 0.00 0.00 3.79
2795 9503 7.430992 TGCATTATGAATCACTTAGAGCATC 57.569 36.000 0.00 0.00 0.00 3.91
2807 9515 2.096596 GAGCATCTCCAACAGCTGC 58.903 57.895 15.27 0.00 43.53 5.25
2808 9516 1.375098 GAGCATCTCCAACAGCTGCC 61.375 60.000 15.27 0.00 44.16 4.85
2809 9517 2.413142 GCATCTCCAACAGCTGCCC 61.413 63.158 15.27 0.00 38.17 5.36
2810 9518 1.001764 CATCTCCAACAGCTGCCCA 60.002 57.895 15.27 0.00 0.00 5.36
2811 9519 0.609957 CATCTCCAACAGCTGCCCAA 60.610 55.000 15.27 0.00 0.00 4.12
2812 9520 0.333993 ATCTCCAACAGCTGCCCAAT 59.666 50.000 15.27 0.00 0.00 3.16
2813 9521 0.609957 TCTCCAACAGCTGCCCAATG 60.610 55.000 15.27 5.39 0.00 2.82
2814 9522 2.221906 CTCCAACAGCTGCCCAATGC 62.222 60.000 15.27 0.00 41.77 3.56
2815 9523 2.126228 CAACAGCTGCCCAATGCG 60.126 61.111 15.27 0.00 45.60 4.73
2816 9524 4.060038 AACAGCTGCCCAATGCGC 62.060 61.111 15.27 0.00 45.60 6.09
2843 9551 3.555401 AAAAACGGGTTTACAGCGC 57.445 47.368 0.00 0.00 31.63 5.92
2844 9552 0.317186 AAAAACGGGTTTACAGCGCG 60.317 50.000 0.00 0.00 45.66 6.86
2845 9553 2.720561 AAAACGGGTTTACAGCGCGC 62.721 55.000 26.66 26.66 44.37 6.86
2846 9554 4.973055 ACGGGTTTACAGCGCGCA 62.973 61.111 35.10 10.31 44.37 6.09
2847 9555 3.718097 CGGGTTTACAGCGCGCAA 61.718 61.111 35.10 16.79 35.67 4.85
2848 9556 2.175811 GGGTTTACAGCGCGCAAG 59.824 61.111 35.10 26.77 43.44 4.01
2849 9557 2.613506 GGGTTTACAGCGCGCAAGT 61.614 57.895 35.10 30.79 41.68 3.16
2850 9558 1.293267 GGGTTTACAGCGCGCAAGTA 61.293 55.000 35.10 29.70 41.68 2.24
2851 9559 0.094730 GGTTTACAGCGCGCAAGTAG 59.905 55.000 35.10 18.85 41.68 2.57
2852 9560 0.788391 GTTTACAGCGCGCAAGTAGT 59.212 50.000 35.10 23.33 41.68 2.73
2853 9561 1.193874 GTTTACAGCGCGCAAGTAGTT 59.806 47.619 35.10 7.55 41.68 2.24
2854 9562 1.504359 TTACAGCGCGCAAGTAGTTT 58.496 45.000 35.10 6.63 41.68 2.66
2855 9563 1.504359 TACAGCGCGCAAGTAGTTTT 58.496 45.000 35.10 5.73 41.68 2.43
2856 9564 0.661020 ACAGCGCGCAAGTAGTTTTT 59.339 45.000 35.10 4.83 41.68 1.94
2874 9582 2.288961 TTTTAGGGCGCTAGAAGACG 57.711 50.000 7.64 0.00 0.00 4.18
2875 9583 1.180029 TTTAGGGCGCTAGAAGACGT 58.820 50.000 7.64 0.00 0.00 4.34
2876 9584 1.180029 TTAGGGCGCTAGAAGACGTT 58.820 50.000 7.64 0.00 0.00 3.99
2877 9585 1.180029 TAGGGCGCTAGAAGACGTTT 58.820 50.000 7.64 0.00 0.00 3.60
2878 9586 0.389948 AGGGCGCTAGAAGACGTTTG 60.390 55.000 7.64 0.00 0.00 2.93
2879 9587 1.420312 GGCGCTAGAAGACGTTTGC 59.580 57.895 7.64 0.00 0.00 3.68
2880 9588 1.014564 GGCGCTAGAAGACGTTTGCT 61.015 55.000 7.64 0.00 0.00 3.91
2881 9589 0.367210 GCGCTAGAAGACGTTTGCTC 59.633 55.000 0.00 0.00 0.00 4.26
2882 9590 0.992802 CGCTAGAAGACGTTTGCTCC 59.007 55.000 0.00 0.00 0.00 4.70
2883 9591 1.668919 CGCTAGAAGACGTTTGCTCCA 60.669 52.381 0.00 0.00 0.00 3.86
2884 9592 2.413837 GCTAGAAGACGTTTGCTCCAA 58.586 47.619 0.00 0.00 0.00 3.53
2885 9593 2.157863 GCTAGAAGACGTTTGCTCCAAC 59.842 50.000 0.00 0.00 0.00 3.77
2886 9594 2.325583 AGAAGACGTTTGCTCCAACA 57.674 45.000 0.00 0.00 0.00 3.33
2887 9595 2.639065 AGAAGACGTTTGCTCCAACAA 58.361 42.857 0.00 0.00 0.00 2.83
2888 9596 2.614057 AGAAGACGTTTGCTCCAACAAG 59.386 45.455 0.00 0.00 0.00 3.16
2889 9597 0.663153 AGACGTTTGCTCCAACAAGC 59.337 50.000 0.00 0.00 42.82 4.01
2890 9598 4.210447 CGTTTGCTCCAACAAGCG 57.790 55.556 0.00 0.00 45.37 4.68
2891 9599 2.010817 CGTTTGCTCCAACAAGCGC 61.011 57.895 0.00 0.00 44.96 5.92
2892 9600 1.360192 GTTTGCTCCAACAAGCGCT 59.640 52.632 2.64 2.64 45.54 5.92
2893 9601 0.936297 GTTTGCTCCAACAAGCGCTG 60.936 55.000 12.58 8.13 45.54 5.18
2894 9602 2.682256 TTTGCTCCAACAAGCGCTGC 62.682 55.000 12.58 8.98 45.54 5.25
2895 9603 3.663176 GCTCCAACAAGCGCTGCA 61.663 61.111 12.58 0.00 31.56 4.41
2896 9604 3.033184 CTCCAACAAGCGCTGCAA 58.967 55.556 12.58 0.00 0.00 4.08
2897 9605 1.359833 CTCCAACAAGCGCTGCAAA 59.640 52.632 12.58 0.00 0.00 3.68
2898 9606 0.248990 CTCCAACAAGCGCTGCAAAA 60.249 50.000 12.58 0.00 0.00 2.44
2899 9607 0.388659 TCCAACAAGCGCTGCAAAAT 59.611 45.000 12.58 0.00 0.00 1.82
2900 9608 1.611006 TCCAACAAGCGCTGCAAAATA 59.389 42.857 12.58 0.00 0.00 1.40
2901 9609 2.230992 TCCAACAAGCGCTGCAAAATAT 59.769 40.909 12.58 0.00 0.00 1.28
2902 9610 2.346244 CCAACAAGCGCTGCAAAATATG 59.654 45.455 12.58 5.08 0.00 1.78
2903 9611 2.988493 CAACAAGCGCTGCAAAATATGT 59.012 40.909 12.58 5.87 0.00 2.29
2904 9612 3.302365 ACAAGCGCTGCAAAATATGTT 57.698 38.095 12.58 0.00 0.00 2.71
2905 9613 2.988493 ACAAGCGCTGCAAAATATGTTG 59.012 40.909 12.58 2.69 0.00 3.33
2911 9619 1.266658 GCAAAATATGTTGCGCGCG 59.733 52.632 28.44 28.44 44.05 6.86
2912 9620 1.266658 CAAAATATGTTGCGCGCGC 59.733 52.632 45.02 45.02 42.35 6.86
2913 9621 2.214292 AAAATATGTTGCGCGCGCG 61.214 52.632 45.73 45.73 45.51 6.86
2929 9637 3.518998 CGAGTCGAGCGGTCCCAT 61.519 66.667 6.73 0.00 0.00 4.00
2930 9638 2.413765 GAGTCGAGCGGTCCCATC 59.586 66.667 9.39 0.42 0.00 3.51
2931 9639 2.043852 AGTCGAGCGGTCCCATCT 60.044 61.111 9.39 0.00 0.00 2.90
2932 9640 2.105128 GTCGAGCGGTCCCATCTG 59.895 66.667 9.39 0.00 0.00 2.90
2933 9641 3.838271 TCGAGCGGTCCCATCTGC 61.838 66.667 9.39 0.00 39.72 4.26
2934 9642 4.147449 CGAGCGGTCCCATCTGCA 62.147 66.667 9.39 0.00 41.63 4.41
2935 9643 2.202987 GAGCGGTCCCATCTGCAG 60.203 66.667 7.63 7.63 41.63 4.41
2936 9644 4.479993 AGCGGTCCCATCTGCAGC 62.480 66.667 9.47 0.00 41.63 5.25
2937 9645 4.783621 GCGGTCCCATCTGCAGCA 62.784 66.667 9.47 0.00 39.28 4.41
2938 9646 2.191375 CGGTCCCATCTGCAGCAT 59.809 61.111 9.47 0.43 0.00 3.79
2939 9647 1.890979 CGGTCCCATCTGCAGCATC 60.891 63.158 9.47 0.00 0.00 3.91
2940 9648 1.527844 GGTCCCATCTGCAGCATCC 60.528 63.158 9.47 1.82 0.00 3.51
2941 9649 1.527844 GTCCCATCTGCAGCATCCC 60.528 63.158 9.47 0.00 0.00 3.85
2942 9650 2.002407 TCCCATCTGCAGCATCCCA 61.002 57.895 9.47 0.00 0.00 4.37
2943 9651 1.528542 CCCATCTGCAGCATCCCAG 60.529 63.158 9.47 0.00 0.00 4.45
2944 9652 1.530283 CCATCTGCAGCATCCCAGA 59.470 57.895 9.47 0.00 41.81 3.86
2945 9653 0.535328 CCATCTGCAGCATCCCAGAG 60.535 60.000 9.47 0.00 41.00 3.35
2946 9654 0.180642 CATCTGCAGCATCCCAGAGT 59.819 55.000 9.47 0.00 41.00 3.24
2947 9655 0.917533 ATCTGCAGCATCCCAGAGTT 59.082 50.000 9.47 0.00 41.00 3.01
2948 9656 0.694771 TCTGCAGCATCCCAGAGTTT 59.305 50.000 9.47 0.00 33.44 2.66
2949 9657 0.809385 CTGCAGCATCCCAGAGTTTG 59.191 55.000 0.00 0.00 0.00 2.93
2950 9658 1.246056 TGCAGCATCCCAGAGTTTGC 61.246 55.000 0.00 0.00 35.34 3.68
2951 9659 1.246056 GCAGCATCCCAGAGTTTGCA 61.246 55.000 0.00 0.00 37.56 4.08
2952 9660 0.809385 CAGCATCCCAGAGTTTGCAG 59.191 55.000 0.00 0.00 37.56 4.41
2953 9661 0.964358 AGCATCCCAGAGTTTGCAGC 60.964 55.000 0.00 0.00 37.56 5.25
2954 9662 1.798735 CATCCCAGAGTTTGCAGCG 59.201 57.895 0.00 0.00 0.00 5.18
2955 9663 2.042831 ATCCCAGAGTTTGCAGCGC 61.043 57.895 0.00 0.00 0.00 5.92
2956 9664 4.093952 CCCAGAGTTTGCAGCGCG 62.094 66.667 0.00 0.00 0.00 6.86
2957 9665 4.748679 CCAGAGTTTGCAGCGCGC 62.749 66.667 26.66 26.66 42.89 6.86
2970 9678 4.746951 CGCGCGTGACTGGACGTA 62.747 66.667 24.19 0.00 41.54 3.57
2971 9679 3.170585 GCGCGTGACTGGACGTAC 61.171 66.667 8.43 0.00 41.54 3.67
2972 9680 2.559840 CGCGTGACTGGACGTACT 59.440 61.111 0.00 0.00 41.54 2.73
2973 9681 1.789751 CGCGTGACTGGACGTACTA 59.210 57.895 0.00 0.00 41.54 1.82
2974 9682 0.166597 CGCGTGACTGGACGTACTAA 59.833 55.000 0.00 0.00 41.54 2.24
2975 9683 1.400113 CGCGTGACTGGACGTACTAAA 60.400 52.381 0.00 0.00 41.54 1.85
2976 9684 2.730090 CGCGTGACTGGACGTACTAAAT 60.730 50.000 0.00 0.00 41.54 1.40
2977 9685 3.485711 CGCGTGACTGGACGTACTAAATA 60.486 47.826 0.00 0.00 41.54 1.40
2978 9686 4.604976 GCGTGACTGGACGTACTAAATAT 58.395 43.478 0.00 0.00 41.54 1.28
2979 9687 4.440103 GCGTGACTGGACGTACTAAATATG 59.560 45.833 0.00 0.00 41.54 1.78
2980 9688 4.440103 CGTGACTGGACGTACTAAATATGC 59.560 45.833 0.00 0.00 34.56 3.14
2981 9689 5.589192 GTGACTGGACGTACTAAATATGCT 58.411 41.667 0.00 0.00 0.00 3.79
2982 9690 5.459107 GTGACTGGACGTACTAAATATGCTG 59.541 44.000 0.00 0.00 0.00 4.41
2983 9691 4.369182 ACTGGACGTACTAAATATGCTGC 58.631 43.478 0.00 0.00 0.00 5.25
2984 9692 3.377439 TGGACGTACTAAATATGCTGCG 58.623 45.455 0.00 0.00 0.00 5.18
2985 9693 2.155155 GGACGTACTAAATATGCTGCGC 59.845 50.000 0.00 0.00 0.00 6.09
2986 9694 1.784856 ACGTACTAAATATGCTGCGCG 59.215 47.619 0.00 0.00 0.00 6.86
2987 9695 1.460267 CGTACTAAATATGCTGCGCGC 60.460 52.381 27.26 27.26 39.77 6.86
2988 9696 0.781787 TACTAAATATGCTGCGCGCG 59.218 50.000 28.44 28.44 43.27 6.86
2989 9697 0.874175 ACTAAATATGCTGCGCGCGA 60.874 50.000 37.18 17.91 43.27 5.87
2990 9698 0.439985 CTAAATATGCTGCGCGCGAT 59.560 50.000 37.18 20.72 43.27 4.58
2991 9699 0.163574 TAAATATGCTGCGCGCGATG 59.836 50.000 37.18 25.13 43.27 3.84
2992 9700 3.584250 AATATGCTGCGCGCGATGC 62.584 57.895 37.18 33.14 43.27 3.91
2997 9705 4.465512 CTGCGCGCGATGCCTTTT 62.466 61.111 37.18 0.00 42.08 2.27
2998 9706 3.951655 CTGCGCGCGATGCCTTTTT 62.952 57.895 37.18 0.00 42.08 1.94
2999 9707 2.099446 GCGCGCGATGCCTTTTTA 59.901 55.556 37.18 0.00 42.08 1.52
3000 9708 1.513160 GCGCGCGATGCCTTTTTAA 60.513 52.632 37.18 0.00 42.08 1.52
3001 9709 0.865639 GCGCGCGATGCCTTTTTAAT 60.866 50.000 37.18 0.00 42.08 1.40
3002 9710 0.839477 CGCGCGATGCCTTTTTAATG 59.161 50.000 28.94 0.00 42.08 1.90
3003 9711 0.572125 GCGCGATGCCTTTTTAATGC 59.428 50.000 12.10 0.00 37.76 3.56
3004 9712 0.839477 CGCGATGCCTTTTTAATGCG 59.161 50.000 0.00 0.00 38.28 4.73
3005 9713 0.572125 GCGATGCCTTTTTAATGCGC 59.428 50.000 0.00 0.00 36.35 6.09
3006 9714 0.839477 CGATGCCTTTTTAATGCGCG 59.161 50.000 0.00 0.00 0.00 6.86
3007 9715 0.572125 GATGCCTTTTTAATGCGCGC 59.428 50.000 27.26 27.26 0.00 6.86
3008 9716 1.139226 ATGCCTTTTTAATGCGCGCG 61.139 50.000 28.44 28.44 0.00 6.86
3009 9717 2.986809 CCTTTTTAATGCGCGCGC 59.013 55.556 45.02 45.02 42.35 6.86
3019 9727 4.520846 GCGCGCGCTGCATTAGTT 62.521 61.111 44.38 0.00 46.97 2.24
3020 9728 3.002673 CGCGCGCTGCATTAGTTA 58.997 55.556 30.48 0.00 46.97 2.24
3021 9729 1.564622 CGCGCGCTGCATTAGTTAT 59.435 52.632 30.48 0.00 46.97 1.89
3022 9730 0.781787 CGCGCGCTGCATTAGTTATA 59.218 50.000 30.48 0.00 46.97 0.98
3023 9731 1.201704 CGCGCGCTGCATTAGTTATAG 60.202 52.381 30.48 3.74 46.97 1.31
3024 9732 1.462541 GCGCGCTGCATTAGTTATAGC 60.463 52.381 26.67 0.00 45.45 2.97
3027 9735 2.493997 GCTGCATTAGTTATAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
3028 9736 1.462541 GCTGCATTAGTTATAGCGCGC 60.463 52.381 26.66 26.66 0.00 6.86
3029 9737 0.781787 TGCATTAGTTATAGCGCGCG 59.218 50.000 28.44 28.44 0.00 6.86
3030 9738 0.516524 GCATTAGTTATAGCGCGCGC 60.517 55.000 45.10 45.10 42.33 6.86
3048 9756 2.028043 GCTTTTTGTGCGGCTGCT 59.972 55.556 20.27 0.00 43.34 4.24
3049 9757 2.305127 GCTTTTTGTGCGGCTGCTG 61.305 57.895 20.27 3.55 43.34 4.41
3050 9758 1.662446 CTTTTTGTGCGGCTGCTGG 60.662 57.895 20.27 0.00 43.34 4.85
3051 9759 2.074230 CTTTTTGTGCGGCTGCTGGA 62.074 55.000 20.27 4.18 43.34 3.86
3052 9760 2.074230 TTTTTGTGCGGCTGCTGGAG 62.074 55.000 20.27 0.00 43.34 3.86
3053 9761 2.956799 TTTTGTGCGGCTGCTGGAGA 62.957 55.000 20.27 2.60 43.34 3.71
3054 9762 4.687215 TGTGCGGCTGCTGGAGAC 62.687 66.667 20.27 8.60 43.34 3.36
3055 9763 4.385405 GTGCGGCTGCTGGAGACT 62.385 66.667 20.27 0.00 43.34 3.24
3056 9764 3.630013 TGCGGCTGCTGGAGACTT 61.630 61.111 20.27 0.00 43.34 3.01
3057 9765 2.817396 GCGGCTGCTGGAGACTTC 60.817 66.667 11.21 0.00 38.39 3.01
3058 9766 2.659016 CGGCTGCTGGAGACTTCA 59.341 61.111 0.00 0.00 0.00 3.02
3059 9767 1.004560 CGGCTGCTGGAGACTTCAA 60.005 57.895 0.00 0.00 0.00 2.69
3060 9768 0.603707 CGGCTGCTGGAGACTTCAAA 60.604 55.000 0.00 0.00 0.00 2.69
3061 9769 1.831580 GGCTGCTGGAGACTTCAAAT 58.168 50.000 0.00 0.00 0.00 2.32
3062 9770 1.742268 GGCTGCTGGAGACTTCAAATC 59.258 52.381 0.00 0.00 0.00 2.17
3063 9771 1.396301 GCTGCTGGAGACTTCAAATCG 59.604 52.381 0.00 0.00 0.00 3.34
3064 9772 2.005451 CTGCTGGAGACTTCAAATCGG 58.995 52.381 0.00 0.00 0.00 4.18
3065 9773 0.729690 GCTGGAGACTTCAAATCGGC 59.270 55.000 0.00 0.00 0.00 5.54
3066 9774 1.677217 GCTGGAGACTTCAAATCGGCT 60.677 52.381 0.00 0.00 0.00 5.52
3067 9775 2.275318 CTGGAGACTTCAAATCGGCTC 58.725 52.381 0.00 0.00 0.00 4.70
3068 9776 1.066143 TGGAGACTTCAAATCGGCTCC 60.066 52.381 4.22 4.22 41.69 4.70
3069 9777 1.281899 GAGACTTCAAATCGGCTCCG 58.718 55.000 1.14 1.14 41.35 4.63
3070 9778 0.741221 AGACTTCAAATCGGCTCCGC 60.741 55.000 2.96 0.00 39.59 5.54
3071 9779 2.025359 GACTTCAAATCGGCTCCGCG 62.025 60.000 0.00 0.00 39.59 6.46
3072 9780 3.440356 CTTCAAATCGGCTCCGCGC 62.440 63.158 0.00 0.00 39.59 6.86
3082 9790 4.559386 CTCCGCGCGCGCTAAAAG 62.559 66.667 45.97 32.68 39.32 2.27
3086 9794 4.445545 GCGCGCGCTAAAAGCAGT 62.446 61.111 44.38 0.00 42.58 4.40
3087 9795 2.173382 CGCGCGCTAAAAGCAGTT 59.827 55.556 30.48 0.00 42.58 3.16
3088 9796 1.440353 CGCGCGCTAAAAGCAGTTT 60.440 52.632 30.48 0.00 42.58 2.66
3089 9797 0.996727 CGCGCGCTAAAAGCAGTTTT 60.997 50.000 30.48 0.00 42.58 2.43
3090 9798 1.128513 GCGCGCTAAAAGCAGTTTTT 58.871 45.000 26.67 0.28 42.58 1.94
3091 9799 2.312348 GCGCGCTAAAAGCAGTTTTTA 58.688 42.857 26.67 2.57 42.58 1.52
3092 9800 2.914838 GCGCGCTAAAAGCAGTTTTTAT 59.085 40.909 26.67 0.00 42.58 1.40
3093 9801 4.092816 GCGCGCTAAAAGCAGTTTTTATA 58.907 39.130 26.67 0.00 42.58 0.98
3094 9802 4.028750 GCGCGCTAAAAGCAGTTTTTATAC 60.029 41.667 26.67 0.00 42.58 1.47
3095 9803 4.494410 CGCGCTAAAAGCAGTTTTTATACC 59.506 41.667 5.56 0.00 42.58 2.73
3096 9804 4.494410 GCGCTAAAAGCAGTTTTTATACCG 59.506 41.667 0.00 7.48 42.58 4.02
3097 9805 4.494410 CGCTAAAAGCAGTTTTTATACCGC 59.506 41.667 2.95 2.96 42.58 5.68
3098 9806 4.494410 GCTAAAAGCAGTTTTTATACCGCG 59.506 41.667 0.00 0.00 41.89 6.46
3099 9807 2.537639 AAGCAGTTTTTATACCGCGC 57.462 45.000 0.00 0.00 0.00 6.86
3100 9808 0.372334 AGCAGTTTTTATACCGCGCG 59.628 50.000 25.67 25.67 0.00 6.86
3101 9809 0.095762 GCAGTTTTTATACCGCGCGT 59.904 50.000 29.95 18.85 0.00 6.01
3102 9810 1.849348 GCAGTTTTTATACCGCGCGTC 60.849 52.381 29.95 7.02 0.00 5.19
3103 9811 0.641783 AGTTTTTATACCGCGCGTCG 59.358 50.000 29.95 17.12 38.08 5.12
3124 9832 4.653806 GCTTATATAGCGCTTCTGTTGG 57.346 45.455 18.68 2.18 40.71 3.77
3125 9833 4.307432 GCTTATATAGCGCTTCTGTTGGA 58.693 43.478 18.68 0.00 40.71 3.53
3126 9834 4.387256 GCTTATATAGCGCTTCTGTTGGAG 59.613 45.833 18.68 5.30 40.71 3.86
3127 9835 5.773575 CTTATATAGCGCTTCTGTTGGAGA 58.226 41.667 18.68 0.00 0.00 3.71
3128 9836 4.881019 ATATAGCGCTTCTGTTGGAGAT 57.119 40.909 18.68 0.28 0.00 2.75
3129 9837 2.299993 TAGCGCTTCTGTTGGAGATG 57.700 50.000 18.68 0.00 0.00 2.90
3130 9838 1.023513 AGCGCTTCTGTTGGAGATGC 61.024 55.000 2.64 0.00 44.71 3.91
3131 9839 1.023513 GCGCTTCTGTTGGAGATGCT 61.024 55.000 0.00 0.00 45.55 3.79
3132 9840 1.005340 CGCTTCTGTTGGAGATGCTC 58.995 55.000 0.00 0.00 45.55 4.26
3133 9841 1.405256 CGCTTCTGTTGGAGATGCTCT 60.405 52.381 0.00 0.00 45.55 4.09
3134 9842 2.709213 GCTTCTGTTGGAGATGCTCTT 58.291 47.619 0.00 0.00 44.73 2.85
3135 9843 3.677148 CGCTTCTGTTGGAGATGCTCTTA 60.677 47.826 0.00 0.00 45.55 2.10
3136 9844 3.620821 GCTTCTGTTGGAGATGCTCTTAC 59.379 47.826 0.00 0.00 44.73 2.34
3137 9845 3.510388 TCTGTTGGAGATGCTCTTACG 57.490 47.619 0.00 0.00 0.00 3.18
3138 9846 3.089284 TCTGTTGGAGATGCTCTTACGA 58.911 45.455 0.00 0.00 0.00 3.43
3139 9847 3.509967 TCTGTTGGAGATGCTCTTACGAA 59.490 43.478 0.00 0.00 0.00 3.85
3140 9848 4.160439 TCTGTTGGAGATGCTCTTACGAAT 59.840 41.667 0.00 0.00 0.00 3.34
3141 9849 4.183865 TGTTGGAGATGCTCTTACGAATG 58.816 43.478 0.00 0.00 0.00 2.67
3142 9850 4.184629 GTTGGAGATGCTCTTACGAATGT 58.815 43.478 0.00 0.00 0.00 2.71
3143 9851 5.105513 TGTTGGAGATGCTCTTACGAATGTA 60.106 40.000 0.00 0.00 0.00 2.29
3144 9852 5.791336 TGGAGATGCTCTTACGAATGTAT 57.209 39.130 0.00 0.00 0.00 2.29
3145 9853 6.894339 TGGAGATGCTCTTACGAATGTATA 57.106 37.500 0.00 0.00 0.00 1.47
3146 9854 7.468141 TGGAGATGCTCTTACGAATGTATAT 57.532 36.000 0.00 0.00 0.00 0.86
3147 9855 8.575649 TGGAGATGCTCTTACGAATGTATATA 57.424 34.615 0.00 0.00 0.00 0.86
3148 9856 9.190317 TGGAGATGCTCTTACGAATGTATATAT 57.810 33.333 0.00 0.00 0.00 0.86
3183 9891 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3184 9892 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
3185 9893 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
3186 9894 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
3187 9895 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
3188 9896 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
3189 9897 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
3190 9898 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
3191 9899 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
3192 9900 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
3193 9901 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
3194 9902 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
3195 9903 6.036517 CACTCATTTTGCTCTGTATGTAGTCC 59.963 42.308 0.00 0.00 0.00 3.85
3196 9904 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
3197 9905 6.653020 TCATTTTGCTCTGTATGTAGTCCAT 58.347 36.000 0.00 0.00 37.58 3.41
3198 9906 7.791029 TCATTTTGCTCTGTATGTAGTCCATA 58.209 34.615 0.00 0.00 34.86 2.74
3199 9907 8.432013 TCATTTTGCTCTGTATGTAGTCCATAT 58.568 33.333 0.00 0.00 38.29 1.78
3200 9908 8.501580 CATTTTGCTCTGTATGTAGTCCATATG 58.498 37.037 0.00 0.00 38.29 1.78
3201 9909 6.976934 TTGCTCTGTATGTAGTCCATATGA 57.023 37.500 3.65 0.00 38.29 2.15
3202 9910 6.976934 TGCTCTGTATGTAGTCCATATGAA 57.023 37.500 3.65 0.00 38.29 2.57
3203 9911 7.360113 TGCTCTGTATGTAGTCCATATGAAA 57.640 36.000 3.65 0.00 38.29 2.69
3204 9912 7.966812 TGCTCTGTATGTAGTCCATATGAAAT 58.033 34.615 3.65 0.00 38.29 2.17
3205 9913 8.090831 TGCTCTGTATGTAGTCCATATGAAATC 58.909 37.037 3.65 0.00 38.29 2.17
3206 9914 8.310382 GCTCTGTATGTAGTCCATATGAAATCT 58.690 37.037 3.65 0.00 38.29 2.40
3207 9915 9.636879 CTCTGTATGTAGTCCATATGAAATCTG 57.363 37.037 3.65 0.00 38.29 2.90
3208 9916 9.147732 TCTGTATGTAGTCCATATGAAATCTGT 57.852 33.333 3.65 0.00 38.29 3.41
3214 9922 9.599866 TGTAGTCCATATGAAATCTGTACAAAG 57.400 33.333 3.65 0.00 0.00 2.77
3215 9923 9.817809 GTAGTCCATATGAAATCTGTACAAAGA 57.182 33.333 3.65 0.00 0.00 2.52
3216 9924 8.723942 AGTCCATATGAAATCTGTACAAAGAC 57.276 34.615 3.65 0.00 0.00 3.01
3217 9925 8.543774 AGTCCATATGAAATCTGTACAAAGACT 58.456 33.333 3.65 0.23 0.00 3.24
3218 9926 9.167311 GTCCATATGAAATCTGTACAAAGACTT 57.833 33.333 3.65 0.00 0.00 3.01
3235 9943 9.892130 ACAAAGACTTATATTTAGGAACAGAGG 57.108 33.333 0.00 0.00 0.00 3.69
3236 9944 9.331282 CAAAGACTTATATTTAGGAACAGAGGG 57.669 37.037 0.00 0.00 0.00 4.30
3355 10075 7.205297 CCCTATTTCCAATCACAATTTGCTAG 58.795 38.462 0.00 0.00 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
309 325 3.829886 TCGTCTTCACAAATTCCATGC 57.170 42.857 0.00 0.00 0.00 4.06
585 798 8.034215 TCCATATTTTGTTGCTAAATTGTCCTG 58.966 33.333 0.00 0.00 0.00 3.86
586 799 8.133024 TCCATATTTTGTTGCTAAATTGTCCT 57.867 30.769 0.00 0.00 0.00 3.85
861 1204 0.896479 TGCATGCACATGAGTTGGCT 60.896 50.000 18.46 0.00 41.20 4.75
1091 5146 2.860735 CTCAAATAAAGGCGACTCGGAG 59.139 50.000 2.83 2.83 42.68 4.63
1743 5825 0.933047 CGCGATCGAGGATAAACGCA 60.933 55.000 21.57 0.00 44.96 5.24
2258 6382 1.498865 GCAGTGTGTCACGAACCCAG 61.499 60.000 0.00 0.00 39.64 4.45
2259 6383 1.522806 GCAGTGTGTCACGAACCCA 60.523 57.895 0.00 0.00 39.64 4.51
2436 6560 4.379243 CCTCACCTTCGCGCCACT 62.379 66.667 0.00 0.00 0.00 4.00
2561 6686 0.687354 ACTGTCTGGTAAGGTGCAGG 59.313 55.000 0.00 0.00 0.00 4.85
2571 6696 1.021968 GCGTTTTTCCACTGTCTGGT 58.978 50.000 0.00 0.00 41.52 4.00
2573 6698 0.041312 CGGCGTTTTTCCACTGTCTG 60.041 55.000 0.00 0.00 0.00 3.51
2597 9304 7.843490 AATTCTTCAATTGATGCTTCCATTG 57.157 32.000 9.40 16.16 36.69 2.82
2643 9350 9.236691 CACATGAACATAAATGGCACTTATTAC 57.763 33.333 0.00 0.00 0.00 1.89
2657 9364 2.779755 AGGTCCGCACATGAACATAA 57.220 45.000 0.00 0.00 0.00 1.90
2707 9414 8.999431 GGTTCTCTCAAATACATGAACAGTAAA 58.001 33.333 0.00 0.00 36.50 2.01
2731 9439 0.115745 TTAGGAACGGAGGGAGTGGT 59.884 55.000 0.00 0.00 0.00 4.16
2732 9440 1.272807 TTTAGGAACGGAGGGAGTGG 58.727 55.000 0.00 0.00 0.00 4.00
2733 9441 4.957684 ATATTTAGGAACGGAGGGAGTG 57.042 45.455 0.00 0.00 0.00 3.51
2734 9442 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2735 9443 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2736 9444 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2737 9445 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2738 9446 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2739 9447 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2755 9463 9.453572 TTCATAATGCAATCTCTACAAAGACTT 57.546 29.630 0.00 0.00 0.00 3.01
2756 9464 9.624373 ATTCATAATGCAATCTCTACAAAGACT 57.376 29.630 0.00 0.00 0.00 3.24
2757 9465 9.875675 GATTCATAATGCAATCTCTACAAAGAC 57.124 33.333 0.00 0.00 0.00 3.01
2758 9466 9.617523 TGATTCATAATGCAATCTCTACAAAGA 57.382 29.630 0.00 0.00 31.33 2.52
2759 9467 9.661187 GTGATTCATAATGCAATCTCTACAAAG 57.339 33.333 0.00 0.00 31.33 2.77
2760 9468 9.399797 AGTGATTCATAATGCAATCTCTACAAA 57.600 29.630 0.00 0.00 33.25 2.83
2761 9469 8.969260 AGTGATTCATAATGCAATCTCTACAA 57.031 30.769 0.00 0.00 33.25 2.41
2762 9470 8.969260 AAGTGATTCATAATGCAATCTCTACA 57.031 30.769 0.00 0.00 33.67 2.74
2765 9473 9.491675 CTCTAAGTGATTCATAATGCAATCTCT 57.508 33.333 0.00 0.00 35.39 3.10
2766 9474 8.229137 GCTCTAAGTGATTCATAATGCAATCTC 58.771 37.037 0.00 0.00 31.33 2.75
2767 9475 7.718314 TGCTCTAAGTGATTCATAATGCAATCT 59.282 33.333 0.00 0.00 31.33 2.40
2768 9476 7.868775 TGCTCTAAGTGATTCATAATGCAATC 58.131 34.615 0.00 0.00 0.00 2.67
2769 9477 7.812690 TGCTCTAAGTGATTCATAATGCAAT 57.187 32.000 0.00 0.00 0.00 3.56
2770 9478 7.718314 AGATGCTCTAAGTGATTCATAATGCAA 59.282 33.333 0.00 0.00 0.00 4.08
2771 9479 7.222161 AGATGCTCTAAGTGATTCATAATGCA 58.778 34.615 0.00 0.00 0.00 3.96
2772 9480 7.148440 GGAGATGCTCTAAGTGATTCATAATGC 60.148 40.741 0.00 0.00 0.00 3.56
2773 9481 7.876582 TGGAGATGCTCTAAGTGATTCATAATG 59.123 37.037 0.00 0.00 0.00 1.90
2774 9482 7.971201 TGGAGATGCTCTAAGTGATTCATAAT 58.029 34.615 0.00 0.00 0.00 1.28
2775 9483 7.365497 TGGAGATGCTCTAAGTGATTCATAA 57.635 36.000 0.00 0.00 0.00 1.90
2776 9484 6.983906 TGGAGATGCTCTAAGTGATTCATA 57.016 37.500 0.00 0.00 0.00 2.15
2777 9485 5.883685 TGGAGATGCTCTAAGTGATTCAT 57.116 39.130 0.00 0.00 0.00 2.57
2778 9486 5.046376 TGTTGGAGATGCTCTAAGTGATTCA 60.046 40.000 0.00 0.00 31.92 2.57
2779 9487 5.423015 TGTTGGAGATGCTCTAAGTGATTC 58.577 41.667 0.00 0.00 31.92 2.52
2780 9488 5.426504 CTGTTGGAGATGCTCTAAGTGATT 58.573 41.667 0.00 0.00 31.92 2.57
2781 9489 4.682859 GCTGTTGGAGATGCTCTAAGTGAT 60.683 45.833 0.00 0.00 31.92 3.06
2782 9490 3.368843 GCTGTTGGAGATGCTCTAAGTGA 60.369 47.826 0.00 0.00 31.92 3.41
2783 9491 2.935201 GCTGTTGGAGATGCTCTAAGTG 59.065 50.000 0.00 0.00 31.92 3.16
2784 9492 2.836981 AGCTGTTGGAGATGCTCTAAGT 59.163 45.455 0.00 0.00 31.92 2.24
2785 9493 3.196463 CAGCTGTTGGAGATGCTCTAAG 58.804 50.000 5.25 0.00 31.92 2.18
2786 9494 3.257469 CAGCTGTTGGAGATGCTCTAA 57.743 47.619 5.25 0.00 29.56 2.10
2787 9495 2.975732 CAGCTGTTGGAGATGCTCTA 57.024 50.000 5.25 0.00 29.56 2.43
2788 9496 3.857217 CAGCTGTTGGAGATGCTCT 57.143 52.632 5.25 0.00 29.56 4.09
2792 9500 0.609957 TTGGGCAGCTGTTGGAGATG 60.610 55.000 16.64 0.00 41.37 2.90
2793 9501 0.333993 ATTGGGCAGCTGTTGGAGAT 59.666 50.000 16.64 0.00 0.00 2.75
2794 9502 0.609957 CATTGGGCAGCTGTTGGAGA 60.610 55.000 16.64 0.00 0.00 3.71
2795 9503 1.888018 CATTGGGCAGCTGTTGGAG 59.112 57.895 16.64 0.00 0.00 3.86
2796 9504 2.277591 GCATTGGGCAGCTGTTGGA 61.278 57.895 16.64 0.00 43.97 3.53
2797 9505 2.263540 GCATTGGGCAGCTGTTGG 59.736 61.111 16.64 0.76 43.97 3.77
2798 9506 2.126228 CGCATTGGGCAGCTGTTG 60.126 61.111 16.64 6.94 45.17 3.33
2799 9507 4.060038 GCGCATTGGGCAGCTGTT 62.060 61.111 19.64 0.00 45.17 3.16
2825 9533 0.317186 CGCGCTGTAAACCCGTTTTT 60.317 50.000 5.56 0.00 34.23 1.94
2826 9534 1.280444 CGCGCTGTAAACCCGTTTT 59.720 52.632 5.56 0.00 34.23 2.43
2827 9535 2.940561 CGCGCTGTAAACCCGTTT 59.059 55.556 5.56 0.00 36.63 3.60
2828 9536 3.719144 GCGCGCTGTAAACCCGTT 61.719 61.111 26.67 0.00 0.00 4.44
2829 9537 4.973055 TGCGCGCTGTAAACCCGT 62.973 61.111 33.29 0.00 0.00 5.28
2830 9538 3.645157 CTTGCGCGCTGTAAACCCG 62.645 63.158 33.29 2.37 0.00 5.28
2831 9539 1.293267 TACTTGCGCGCTGTAAACCC 61.293 55.000 33.29 0.00 0.00 4.11
2832 9540 0.094730 CTACTTGCGCGCTGTAAACC 59.905 55.000 33.29 0.00 0.00 3.27
2833 9541 0.788391 ACTACTTGCGCGCTGTAAAC 59.212 50.000 33.29 0.86 0.00 2.01
2834 9542 1.504359 AACTACTTGCGCGCTGTAAA 58.496 45.000 33.29 17.09 0.00 2.01
2835 9543 1.504359 AAACTACTTGCGCGCTGTAA 58.496 45.000 33.29 17.49 0.00 2.41
2836 9544 1.504359 AAAACTACTTGCGCGCTGTA 58.496 45.000 33.29 29.06 0.00 2.74
2837 9545 0.661020 AAAAACTACTTGCGCGCTGT 59.339 45.000 33.29 29.50 0.00 4.40
2838 9546 3.454941 AAAAACTACTTGCGCGCTG 57.545 47.368 33.29 25.60 0.00 5.18
2854 9562 2.028748 ACGTCTTCTAGCGCCCTAAAAA 60.029 45.455 2.29 0.00 0.00 1.94
2855 9563 1.547372 ACGTCTTCTAGCGCCCTAAAA 59.453 47.619 2.29 0.00 0.00 1.52
2856 9564 1.180029 ACGTCTTCTAGCGCCCTAAA 58.820 50.000 2.29 0.00 0.00 1.85
2857 9565 1.180029 AACGTCTTCTAGCGCCCTAA 58.820 50.000 2.29 0.00 0.00 2.69
2858 9566 1.135199 CAAACGTCTTCTAGCGCCCTA 60.135 52.381 2.29 0.00 0.00 3.53
2859 9567 0.389948 CAAACGTCTTCTAGCGCCCT 60.390 55.000 2.29 0.00 0.00 5.19
2860 9568 1.967597 GCAAACGTCTTCTAGCGCCC 61.968 60.000 2.29 0.00 0.00 6.13
2861 9569 1.014564 AGCAAACGTCTTCTAGCGCC 61.015 55.000 2.29 0.00 0.00 6.53
2862 9570 0.367210 GAGCAAACGTCTTCTAGCGC 59.633 55.000 0.00 0.00 0.00 5.92
2863 9571 0.992802 GGAGCAAACGTCTTCTAGCG 59.007 55.000 0.00 0.00 0.00 4.26
2864 9572 2.080286 TGGAGCAAACGTCTTCTAGC 57.920 50.000 0.00 0.00 0.00 3.42
2865 9573 3.390135 TGTTGGAGCAAACGTCTTCTAG 58.610 45.455 0.00 0.00 32.47 2.43
2866 9574 3.462483 TGTTGGAGCAAACGTCTTCTA 57.538 42.857 0.00 0.00 32.47 2.10
2867 9575 2.325583 TGTTGGAGCAAACGTCTTCT 57.674 45.000 0.00 0.00 32.47 2.85
2868 9576 2.854805 GCTTGTTGGAGCAAACGTCTTC 60.855 50.000 0.00 0.00 42.25 2.87
2869 9577 1.065551 GCTTGTTGGAGCAAACGTCTT 59.934 47.619 0.00 0.00 42.25 3.01
2870 9578 0.663153 GCTTGTTGGAGCAAACGTCT 59.337 50.000 0.00 0.00 42.25 4.18
2871 9579 0.657368 CGCTTGTTGGAGCAAACGTC 60.657 55.000 0.00 0.00 42.83 4.34
2872 9580 1.355210 CGCTTGTTGGAGCAAACGT 59.645 52.632 0.00 0.00 42.83 3.99
2873 9581 2.010817 GCGCTTGTTGGAGCAAACG 61.011 57.895 0.00 0.00 42.83 3.60
2874 9582 0.936297 CAGCGCTTGTTGGAGCAAAC 60.936 55.000 7.50 0.00 42.83 2.93
2875 9583 1.359833 CAGCGCTTGTTGGAGCAAA 59.640 52.632 7.50 0.00 42.83 3.68
2876 9584 3.033184 CAGCGCTTGTTGGAGCAA 58.967 55.556 7.50 0.00 42.83 3.91
2877 9585 3.663176 GCAGCGCTTGTTGGAGCA 61.663 61.111 7.50 0.00 42.83 4.26
2878 9586 2.682256 TTTGCAGCGCTTGTTGGAGC 62.682 55.000 7.50 6.99 39.29 4.70
2879 9587 0.248990 TTTTGCAGCGCTTGTTGGAG 60.249 50.000 7.50 0.00 0.00 3.86
2880 9588 0.388659 ATTTTGCAGCGCTTGTTGGA 59.611 45.000 7.50 0.00 0.00 3.53
2881 9589 2.063156 TATTTTGCAGCGCTTGTTGG 57.937 45.000 7.50 0.00 0.00 3.77
2882 9590 2.988493 ACATATTTTGCAGCGCTTGTTG 59.012 40.909 7.50 0.00 0.00 3.33
2883 9591 3.302365 ACATATTTTGCAGCGCTTGTT 57.698 38.095 7.50 0.00 0.00 2.83
2884 9592 2.988493 CAACATATTTTGCAGCGCTTGT 59.012 40.909 7.50 3.75 0.00 3.16
2885 9593 3.628053 CAACATATTTTGCAGCGCTTG 57.372 42.857 7.50 2.95 0.00 4.01
2894 9602 1.266658 GCGCGCGCAACATATTTTG 59.733 52.632 46.11 11.55 41.49 2.44
2895 9603 3.674229 GCGCGCGCAACATATTTT 58.326 50.000 46.11 0.00 41.49 1.82
2912 9620 3.471244 GATGGGACCGCTCGACTCG 62.471 68.421 0.00 0.00 0.00 4.18
2913 9621 2.122167 AGATGGGACCGCTCGACTC 61.122 63.158 0.00 0.00 0.00 3.36
2914 9622 2.043852 AGATGGGACCGCTCGACT 60.044 61.111 0.00 0.00 0.00 4.18
2915 9623 2.105128 CAGATGGGACCGCTCGAC 59.895 66.667 0.00 0.00 0.00 4.20
2916 9624 3.838271 GCAGATGGGACCGCTCGA 61.838 66.667 0.00 0.00 0.00 4.04
2917 9625 4.147449 TGCAGATGGGACCGCTCG 62.147 66.667 0.00 0.00 0.00 5.03
2918 9626 2.202987 CTGCAGATGGGACCGCTC 60.203 66.667 8.42 0.00 0.00 5.03
2919 9627 4.479993 GCTGCAGATGGGACCGCT 62.480 66.667 20.43 0.00 0.00 5.52
2920 9628 4.783621 TGCTGCAGATGGGACCGC 62.784 66.667 20.43 0.00 0.00 5.68
2921 9629 1.890979 GATGCTGCAGATGGGACCG 60.891 63.158 20.43 0.00 0.00 4.79
2922 9630 1.527844 GGATGCTGCAGATGGGACC 60.528 63.158 20.43 7.43 0.00 4.46
2923 9631 1.527844 GGGATGCTGCAGATGGGAC 60.528 63.158 20.43 0.00 0.00 4.46
2924 9632 1.991339 CTGGGATGCTGCAGATGGGA 61.991 60.000 20.43 0.00 0.00 4.37
2925 9633 1.528542 CTGGGATGCTGCAGATGGG 60.529 63.158 20.43 0.00 0.00 4.00
2926 9634 0.535328 CTCTGGGATGCTGCAGATGG 60.535 60.000 20.43 0.00 0.00 3.51
2927 9635 0.180642 ACTCTGGGATGCTGCAGATG 59.819 55.000 20.43 0.00 0.00 2.90
2928 9636 0.917533 AACTCTGGGATGCTGCAGAT 59.082 50.000 20.43 8.20 0.00 2.90
2929 9637 0.694771 AAACTCTGGGATGCTGCAGA 59.305 50.000 20.43 2.70 0.00 4.26
2930 9638 0.809385 CAAACTCTGGGATGCTGCAG 59.191 55.000 10.11 10.11 0.00 4.41
2931 9639 1.246056 GCAAACTCTGGGATGCTGCA 61.246 55.000 4.13 4.13 35.93 4.41
2932 9640 1.246056 TGCAAACTCTGGGATGCTGC 61.246 55.000 10.43 0.00 39.49 5.25
2933 9641 0.809385 CTGCAAACTCTGGGATGCTG 59.191 55.000 10.43 6.98 39.49 4.41
2934 9642 0.964358 GCTGCAAACTCTGGGATGCT 60.964 55.000 10.43 0.00 39.49 3.79
2935 9643 1.509923 GCTGCAAACTCTGGGATGC 59.490 57.895 0.00 3.67 39.22 3.91
2936 9644 1.798735 CGCTGCAAACTCTGGGATG 59.201 57.895 0.00 0.00 0.00 3.51
2937 9645 2.042831 GCGCTGCAAACTCTGGGAT 61.043 57.895 0.00 0.00 0.00 3.85
2938 9646 2.669569 GCGCTGCAAACTCTGGGA 60.670 61.111 0.00 0.00 0.00 4.37
2939 9647 4.093952 CGCGCTGCAAACTCTGGG 62.094 66.667 5.56 0.00 0.00 4.45
2940 9648 4.748679 GCGCGCTGCAAACTCTGG 62.749 66.667 26.67 0.00 45.45 3.86
2953 9661 4.746951 TACGTCCAGTCACGCGCG 62.747 66.667 30.96 30.96 43.93 6.86
2954 9662 2.244436 TAGTACGTCCAGTCACGCGC 62.244 60.000 5.73 0.00 43.93 6.86
2955 9663 0.166597 TTAGTACGTCCAGTCACGCG 59.833 55.000 3.53 3.53 43.93 6.01
2956 9664 2.336554 TTTAGTACGTCCAGTCACGC 57.663 50.000 0.00 0.00 43.93 5.34
2957 9665 4.440103 GCATATTTAGTACGTCCAGTCACG 59.560 45.833 0.00 0.00 45.65 4.35
2958 9666 5.459107 CAGCATATTTAGTACGTCCAGTCAC 59.541 44.000 0.00 0.00 0.00 3.67
2959 9667 5.588240 CAGCATATTTAGTACGTCCAGTCA 58.412 41.667 0.00 0.00 0.00 3.41
2960 9668 4.444720 GCAGCATATTTAGTACGTCCAGTC 59.555 45.833 0.00 0.00 0.00 3.51
2961 9669 4.369182 GCAGCATATTTAGTACGTCCAGT 58.631 43.478 0.00 0.00 0.00 4.00
2962 9670 3.425525 CGCAGCATATTTAGTACGTCCAG 59.574 47.826 0.00 0.00 0.00 3.86
2963 9671 3.377439 CGCAGCATATTTAGTACGTCCA 58.623 45.455 0.00 0.00 0.00 4.02
2980 9688 2.576287 TAAAAAGGCATCGCGCGCAG 62.576 55.000 32.61 23.08 43.84 5.18
2981 9689 2.188849 TTAAAAAGGCATCGCGCGCA 62.189 50.000 32.61 18.69 43.84 6.09
2982 9690 0.865639 ATTAAAAAGGCATCGCGCGC 60.866 50.000 27.95 23.91 43.84 6.86
2983 9691 0.839477 CATTAAAAAGGCATCGCGCG 59.161 50.000 26.76 26.76 43.84 6.86
2984 9692 0.572125 GCATTAAAAAGGCATCGCGC 59.428 50.000 0.00 0.00 41.28 6.86
2985 9693 0.839477 CGCATTAAAAAGGCATCGCG 59.161 50.000 0.00 0.00 35.14 5.87
2986 9694 0.572125 GCGCATTAAAAAGGCATCGC 59.428 50.000 0.30 0.00 34.61 4.58
2987 9695 0.839477 CGCGCATTAAAAAGGCATCG 59.161 50.000 8.75 0.00 0.00 3.84
2988 9696 0.572125 GCGCGCATTAAAAAGGCATC 59.428 50.000 29.10 0.00 0.00 3.91
2989 9697 1.139226 CGCGCGCATTAAAAAGGCAT 61.139 50.000 32.61 0.00 0.00 4.40
2990 9698 1.799519 CGCGCGCATTAAAAAGGCA 60.800 52.632 32.61 0.00 0.00 4.75
2991 9699 2.986809 CGCGCGCATTAAAAAGGC 59.013 55.556 32.61 0.00 0.00 4.35
2992 9700 2.986809 GCGCGCGCATTAAAAAGG 59.013 55.556 46.11 12.36 41.49 3.11
3002 9710 2.430080 ATAACTAATGCAGCGCGCGC 62.430 55.000 45.10 45.10 46.97 6.86
3003 9711 0.781787 TATAACTAATGCAGCGCGCG 59.218 50.000 28.44 28.44 46.97 6.86
3004 9712 1.462541 GCTATAACTAATGCAGCGCGC 60.463 52.381 26.66 26.66 42.89 6.86
3005 9713 2.493997 GCTATAACTAATGCAGCGCG 57.506 50.000 0.00 0.00 0.00 6.86
3008 9716 1.462541 GCGCGCTATAACTAATGCAGC 60.463 52.381 26.67 0.00 0.00 5.25
3009 9717 1.201704 CGCGCGCTATAACTAATGCAG 60.202 52.381 30.48 3.74 0.00 4.41
3010 9718 0.781787 CGCGCGCTATAACTAATGCA 59.218 50.000 30.48 0.00 0.00 3.96
3011 9719 0.516524 GCGCGCGCTATAACTAATGC 60.517 55.000 44.38 16.88 38.26 3.56
3012 9720 0.246374 CGCGCGCGCTATAACTAATG 60.246 55.000 45.97 26.31 39.32 1.90
3013 9721 2.059575 CGCGCGCGCTATAACTAAT 58.940 52.632 45.97 0.00 39.32 1.73
3014 9722 3.517974 CGCGCGCGCTATAACTAA 58.482 55.556 45.97 0.00 39.32 2.24
3031 9739 2.028043 AGCAGCCGCACAAAAAGC 59.972 55.556 0.00 0.00 42.27 3.51
3032 9740 1.662446 CCAGCAGCCGCACAAAAAG 60.662 57.895 0.00 0.00 42.27 2.27
3033 9741 2.074230 CTCCAGCAGCCGCACAAAAA 62.074 55.000 0.00 0.00 42.27 1.94
3034 9742 2.518112 TCCAGCAGCCGCACAAAA 60.518 55.556 0.00 0.00 42.27 2.44
3035 9743 2.979676 CTCCAGCAGCCGCACAAA 60.980 61.111 0.00 0.00 42.27 2.83
3036 9744 3.939939 TCTCCAGCAGCCGCACAA 61.940 61.111 0.00 0.00 42.27 3.33
3037 9745 4.687215 GTCTCCAGCAGCCGCACA 62.687 66.667 0.00 0.00 42.27 4.57
3038 9746 3.890936 AAGTCTCCAGCAGCCGCAC 62.891 63.158 0.00 0.00 42.27 5.34
3039 9747 3.596066 GAAGTCTCCAGCAGCCGCA 62.596 63.158 0.00 0.00 42.27 5.69
3040 9748 2.817396 GAAGTCTCCAGCAGCCGC 60.817 66.667 0.00 0.00 38.99 6.53
3041 9749 0.603707 TTTGAAGTCTCCAGCAGCCG 60.604 55.000 0.00 0.00 0.00 5.52
3042 9750 1.742268 GATTTGAAGTCTCCAGCAGCC 59.258 52.381 0.00 0.00 0.00 4.85
3043 9751 1.396301 CGATTTGAAGTCTCCAGCAGC 59.604 52.381 0.00 0.00 0.00 5.25
3044 9752 2.005451 CCGATTTGAAGTCTCCAGCAG 58.995 52.381 0.00 0.00 0.00 4.24
3045 9753 1.945819 GCCGATTTGAAGTCTCCAGCA 60.946 52.381 0.00 0.00 0.00 4.41
3046 9754 0.729690 GCCGATTTGAAGTCTCCAGC 59.270 55.000 0.00 0.00 0.00 4.85
3047 9755 2.275318 GAGCCGATTTGAAGTCTCCAG 58.725 52.381 0.00 0.00 0.00 3.86
3048 9756 1.066143 GGAGCCGATTTGAAGTCTCCA 60.066 52.381 0.00 0.00 39.75 3.86
3049 9757 1.657822 GGAGCCGATTTGAAGTCTCC 58.342 55.000 0.00 0.00 34.13 3.71
3050 9758 1.281899 CGGAGCCGATTTGAAGTCTC 58.718 55.000 2.00 0.00 42.83 3.36
3051 9759 3.442996 CGGAGCCGATTTGAAGTCT 57.557 52.632 2.00 0.00 42.83 3.24
3069 9777 3.928618 AACTGCTTTTAGCGCGCGC 62.929 57.895 45.10 45.10 46.26 6.86
3070 9778 0.996727 AAAACTGCTTTTAGCGCGCG 60.997 50.000 28.44 28.44 46.26 6.86
3071 9779 1.128513 AAAAACTGCTTTTAGCGCGC 58.871 45.000 26.66 26.66 46.26 6.86
3072 9780 4.494410 GGTATAAAAACTGCTTTTAGCGCG 59.506 41.667 0.00 0.00 46.26 6.86
3073 9781 4.494410 CGGTATAAAAACTGCTTTTAGCGC 59.506 41.667 0.00 0.00 46.26 5.92
3074 9782 4.494410 GCGGTATAAAAACTGCTTTTAGCG 59.506 41.667 0.63 6.37 46.26 4.26
3075 9783 5.926894 GCGGTATAAAAACTGCTTTTAGC 57.073 39.130 0.63 0.00 46.27 3.09
3082 9790 0.095762 ACGCGCGGTATAAAAACTGC 59.904 50.000 35.22 0.00 46.30 4.40
3083 9791 1.588082 CGACGCGCGGTATAAAAACTG 60.588 52.381 35.22 0.99 36.03 3.16
3084 9792 0.641783 CGACGCGCGGTATAAAAACT 59.358 50.000 35.22 8.59 36.03 2.66
3085 9793 0.916320 GCGACGCGCGGTATAAAAAC 60.916 55.000 35.22 11.64 44.55 2.43
3086 9794 1.344498 GCGACGCGCGGTATAAAAA 59.656 52.632 35.22 0.00 44.55 1.94
3087 9795 2.997072 GCGACGCGCGGTATAAAA 59.003 55.556 35.22 0.00 44.55 1.52
3103 9811 7.067973 ATCTCCAACAGAAGCGCTATATAAGC 61.068 42.308 12.05 2.56 40.52 3.09
3104 9812 5.773575 TCTCCAACAGAAGCGCTATATAAG 58.226 41.667 12.05 0.00 0.00 1.73
3105 9813 5.784578 TCTCCAACAGAAGCGCTATATAA 57.215 39.130 12.05 0.00 0.00 0.98
3106 9814 5.714047 CATCTCCAACAGAAGCGCTATATA 58.286 41.667 12.05 0.00 33.62 0.86
3107 9815 4.564041 CATCTCCAACAGAAGCGCTATAT 58.436 43.478 12.05 0.00 33.62 0.86
3108 9816 3.800261 GCATCTCCAACAGAAGCGCTATA 60.800 47.826 12.05 0.00 36.17 1.31
3109 9817 2.831333 CATCTCCAACAGAAGCGCTAT 58.169 47.619 12.05 0.00 33.62 2.97
3110 9818 1.740380 GCATCTCCAACAGAAGCGCTA 60.740 52.381 12.05 0.00 36.17 4.26
3111 9819 1.023513 GCATCTCCAACAGAAGCGCT 61.024 55.000 2.64 2.64 36.17 5.92
3112 9820 1.427020 GCATCTCCAACAGAAGCGC 59.573 57.895 0.00 0.00 36.17 5.92
3161 9869 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
3162 9870 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
3163 9871 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
3164 9872 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
3165 9873 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
3166 9874 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
3167 9875 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
3168 9876 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
3169 9877 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
3170 9878 6.036517 GGACTACATACAGAGCAAAATGAGTG 59.963 42.308 0.00 0.00 0.00 3.51
3171 9879 6.109359 GGACTACATACAGAGCAAAATGAGT 58.891 40.000 0.00 0.00 0.00 3.41
3172 9880 6.108687 TGGACTACATACAGAGCAAAATGAG 58.891 40.000 0.00 0.00 0.00 2.90
3173 9881 6.048732 TGGACTACATACAGAGCAAAATGA 57.951 37.500 0.00 0.00 0.00 2.57
3174 9882 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
3175 9883 8.432013 TCATATGGACTACATACAGAGCAAAAT 58.568 33.333 2.13 0.00 44.41 1.82
3176 9884 7.791029 TCATATGGACTACATACAGAGCAAAA 58.209 34.615 2.13 0.00 44.41 2.44
3177 9885 7.360113 TCATATGGACTACATACAGAGCAAA 57.640 36.000 2.13 0.00 44.41 3.68
3178 9886 6.976934 TCATATGGACTACATACAGAGCAA 57.023 37.500 2.13 0.00 44.41 3.91
3179 9887 6.976934 TTCATATGGACTACATACAGAGCA 57.023 37.500 2.13 0.00 44.41 4.26
3180 9888 8.310382 AGATTTCATATGGACTACATACAGAGC 58.690 37.037 2.13 0.00 44.41 4.09
3181 9889 9.636879 CAGATTTCATATGGACTACATACAGAG 57.363 37.037 2.13 0.00 44.41 3.35
3182 9890 9.147732 ACAGATTTCATATGGACTACATACAGA 57.852 33.333 2.13 0.00 44.41 3.41
3188 9896 9.599866 CTTTGTACAGATTTCATATGGACTACA 57.400 33.333 2.13 0.00 36.31 2.74
3189 9897 9.817809 TCTTTGTACAGATTTCATATGGACTAC 57.182 33.333 2.13 0.00 36.31 2.73
3190 9898 9.817809 GTCTTTGTACAGATTTCATATGGACTA 57.182 33.333 2.13 0.00 36.31 2.59
3191 9899 8.543774 AGTCTTTGTACAGATTTCATATGGACT 58.456 33.333 2.13 0.00 36.31 3.85
3192 9900 8.723942 AGTCTTTGTACAGATTTCATATGGAC 57.276 34.615 2.13 0.00 35.89 4.02
3209 9917 9.892130 CCTCTGTTCCTAAATATAAGTCTTTGT 57.108 33.333 0.00 0.00 0.00 2.83
3210 9918 9.331282 CCCTCTGTTCCTAAATATAAGTCTTTG 57.669 37.037 0.00 0.00 0.00 2.77
3211 9919 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
3212 9920 8.706521 GTCCCTCTGTTCCTAAATATAAGTCTT 58.293 37.037 0.00 0.00 0.00 3.01
3213 9921 8.068733 AGTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
3214 9922 8.252624 AGTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
3215 9923 9.900112 ATAGTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
3222 9930 9.681062 CAAATAAATAGTCCCTCTGTTCCTAAA 57.319 33.333 0.00 0.00 0.00 1.85
3223 9931 7.773690 GCAAATAAATAGTCCCTCTGTTCCTAA 59.226 37.037 0.00 0.00 0.00 2.69
3224 9932 7.092623 TGCAAATAAATAGTCCCTCTGTTCCTA 60.093 37.037 0.00 0.00 0.00 2.94
3225 9933 6.122964 GCAAATAAATAGTCCCTCTGTTCCT 58.877 40.000 0.00 0.00 0.00 3.36
3226 9934 5.885912 TGCAAATAAATAGTCCCTCTGTTCC 59.114 40.000 0.00 0.00 0.00 3.62
3227 9935 7.573968 ATGCAAATAAATAGTCCCTCTGTTC 57.426 36.000 0.00 0.00 0.00 3.18
3228 9936 7.961326 AATGCAAATAAATAGTCCCTCTGTT 57.039 32.000 0.00 0.00 0.00 3.16
3229 9937 7.961326 AAATGCAAATAAATAGTCCCTCTGT 57.039 32.000 0.00 0.00 0.00 3.41
3231 9939 9.003658 CGATAAATGCAAATAAATAGTCCCTCT 57.996 33.333 0.00 0.00 0.00 3.69
3232 9940 8.999431 TCGATAAATGCAAATAAATAGTCCCTC 58.001 33.333 0.00 0.00 0.00 4.30
3233 9941 8.918202 TCGATAAATGCAAATAAATAGTCCCT 57.082 30.769 0.00 0.00 0.00 4.20
3355 10075 4.616181 ACATTTTACGTGATTAGCCAGC 57.384 40.909 0.00 0.00 0.00 4.85
3390 10110 4.284490 TCCATGGGAGAATGCTACATCTAC 59.716 45.833 13.02 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.