Multiple sequence alignment - TraesCS2D01G462400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G462400 chr2D 100.000 3671 0 0 1 3671 568307522 568311192 0.000000e+00 6780.0
1 TraesCS2D01G462400 chr2D 91.432 1669 122 12 1021 2673 568464268 568465931 0.000000e+00 2270.0
2 TraesCS2D01G462400 chr2D 91.483 1268 90 13 1414 2673 568357759 568359016 0.000000e+00 1727.0
3 TraesCS2D01G462400 chr2D 89.228 557 35 10 2233 2784 568423406 568423942 0.000000e+00 673.0
4 TraesCS2D01G462400 chr2D 91.260 389 33 1 1033 1421 568351904 568352291 2.510000e-146 529.0
5 TraesCS2D01G462400 chr2D 87.611 452 41 9 2327 2769 568445054 568445499 9.090000e-141 510.0
6 TraesCS2D01G462400 chr2D 88.021 384 45 1 1033 1416 568439859 568440241 1.550000e-123 453.0
7 TraesCS2D01G462400 chr2B 95.870 1840 59 11 967 2792 680862415 680864251 0.000000e+00 2961.0
8 TraesCS2D01G462400 chr2B 90.937 331 22 3 1021 1350 681123375 681123698 4.350000e-119 438.0
9 TraesCS2D01G462400 chr2A 95.837 1297 50 3 1298 2590 707796421 707797717 0.000000e+00 2093.0
10 TraesCS2D01G462400 chr2A 90.650 877 80 2 1021 1896 707957602 707958477 0.000000e+00 1164.0
11 TraesCS2D01G462400 chr2A 93.886 507 31 0 2161 2667 707958479 707958985 0.000000e+00 765.0
12 TraesCS2D01G462400 chr2A 81.910 199 10 13 2585 2782 707803301 707803474 1.060000e-30 145.0
13 TraesCS2D01G462400 chr7A 80.776 1623 271 31 1050 2653 705547525 705545925 0.000000e+00 1230.0
14 TraesCS2D01G462400 chr7A 81.336 434 44 10 334 747 218025322 218025738 5.920000e-83 318.0
15 TraesCS2D01G462400 chr7A 97.059 34 1 0 752 785 661548860 661548893 1.420000e-04 58.4
16 TraesCS2D01G462400 chr7B 78.600 1500 271 34 1157 2643 730310000 730308538 0.000000e+00 946.0
17 TraesCS2D01G462400 chr7B 76.880 1250 241 34 1423 2648 704824984 704823759 0.000000e+00 664.0
18 TraesCS2D01G462400 chr7B 83.886 633 94 5 2037 2662 704826537 704825906 6.790000e-167 597.0
19 TraesCS2D01G462400 chr5A 86.448 701 92 3 2972 3671 95829688 95828990 0.000000e+00 765.0
20 TraesCS2D01G462400 chr4D 89.731 594 59 2 2972 3564 98488642 98488050 0.000000e+00 758.0
21 TraesCS2D01G462400 chr4D 88.552 594 55 5 2972 3564 98516096 98515515 0.000000e+00 708.0
22 TraesCS2D01G462400 chr7D 80.851 846 144 15 1111 1945 613767382 613766544 0.000000e+00 649.0
23 TraesCS2D01G462400 chr6D 82.090 603 73 20 159 749 242220364 242219785 1.980000e-132 483.0
24 TraesCS2D01G462400 chr6D 77.349 415 59 20 4 403 242220647 242220253 2.870000e-51 213.0
25 TraesCS2D01G462400 chr6D 88.000 50 6 0 281 330 242220419 242220370 3.960000e-05 60.2
26 TraesCS2D01G462400 chr5B 81.633 441 47 15 334 749 373047549 373047118 5.870000e-88 335.0
27 TraesCS2D01G462400 chr5B 78.195 399 70 9 4 395 373048053 373047665 4.740000e-59 239.0
28 TraesCS2D01G462400 chr5B 100.000 29 0 0 195 223 330235394 330235422 2.000000e-03 54.7
29 TraesCS2D01G462400 chr5B 100.000 29 0 0 195 223 330555880 330555908 2.000000e-03 54.7
30 TraesCS2D01G462400 chr6B 75.345 507 113 7 2096 2590 255192357 255191851 2.200000e-57 233.0
31 TraesCS2D01G462400 chr1B 88.462 78 8 1 143 220 91381176 91381100 3.900000e-15 93.5
32 TraesCS2D01G462400 chr3A 73.750 240 47 13 2334 2562 143023105 143023339 3.040000e-11 80.5
33 TraesCS2D01G462400 chr4B 79.646 113 18 5 2969 3079 45425221 45425112 3.930000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G462400 chr2D 568307522 568311192 3670 False 6780.000000 6780 100.000000 1 3671 1 chr2D.!!$F1 3670
1 TraesCS2D01G462400 chr2D 568464268 568465931 1663 False 2270.000000 2270 91.432000 1021 2673 1 chr2D.!!$F7 1652
2 TraesCS2D01G462400 chr2D 568357759 568359016 1257 False 1727.000000 1727 91.483000 1414 2673 1 chr2D.!!$F3 1259
3 TraesCS2D01G462400 chr2D 568423406 568423942 536 False 673.000000 673 89.228000 2233 2784 1 chr2D.!!$F4 551
4 TraesCS2D01G462400 chr2B 680862415 680864251 1836 False 2961.000000 2961 95.870000 967 2792 1 chr2B.!!$F1 1825
5 TraesCS2D01G462400 chr2A 707796421 707797717 1296 False 2093.000000 2093 95.837000 1298 2590 1 chr2A.!!$F1 1292
6 TraesCS2D01G462400 chr2A 707957602 707958985 1383 False 964.500000 1164 92.268000 1021 2667 2 chr2A.!!$F3 1646
7 TraesCS2D01G462400 chr7A 705545925 705547525 1600 True 1230.000000 1230 80.776000 1050 2653 1 chr7A.!!$R1 1603
8 TraesCS2D01G462400 chr7B 730308538 730310000 1462 True 946.000000 946 78.600000 1157 2643 1 chr7B.!!$R1 1486
9 TraesCS2D01G462400 chr7B 704823759 704826537 2778 True 630.500000 664 80.383000 1423 2662 2 chr7B.!!$R2 1239
10 TraesCS2D01G462400 chr5A 95828990 95829688 698 True 765.000000 765 86.448000 2972 3671 1 chr5A.!!$R1 699
11 TraesCS2D01G462400 chr4D 98488050 98488642 592 True 758.000000 758 89.731000 2972 3564 1 chr4D.!!$R1 592
12 TraesCS2D01G462400 chr4D 98515515 98516096 581 True 708.000000 708 88.552000 2972 3564 1 chr4D.!!$R2 592
13 TraesCS2D01G462400 chr7D 613766544 613767382 838 True 649.000000 649 80.851000 1111 1945 1 chr7D.!!$R1 834
14 TraesCS2D01G462400 chr6D 242219785 242220647 862 True 252.066667 483 82.479667 4 749 3 chr6D.!!$R1 745
15 TraesCS2D01G462400 chr5B 373047118 373048053 935 True 287.000000 335 79.914000 4 749 2 chr5B.!!$R1 745
16 TraesCS2D01G462400 chr6B 255191851 255192357 506 True 233.000000 233 75.345000 2096 2590 1 chr6B.!!$R1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
851 1108 0.030101 GGACTCGATCGCTCTCTTGG 59.97 60.0 11.09 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2792 3121 0.249031 ACTTTGCTGCCAAACGAAGC 60.249 50.0 0.0 0.0 36.09 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.631428 CACAGGCAACAACGGTCG 59.369 61.111 0.00 0.00 41.41 4.79
35 36 2.972505 CAGGCAACAACGGTCGCT 60.973 61.111 0.00 0.00 41.41 4.93
42 43 0.677842 AACAACGGTCGCTAGAGGTT 59.322 50.000 0.00 0.00 0.00 3.50
57 58 0.326143 AGGTTTTGCAACTGGGGGTT 60.326 50.000 0.00 0.00 38.93 4.11
64 65 3.494254 AACTGGGGGTTGCCGTGA 61.494 61.111 0.00 0.00 36.70 4.35
168 216 3.782244 CTGCAACGGAGCACTCGC 61.782 66.667 0.00 0.00 40.11 5.03
210 259 4.087892 AGCTCCCGACGCTGCAAT 62.088 61.111 0.00 0.00 36.15 3.56
220 269 2.036571 CGCTGCAATGGAGCACTCA 61.037 57.895 25.49 0.00 40.11 3.41
269 499 3.334751 CGACGCTGCAACGGAACA 61.335 61.111 14.82 0.00 37.37 3.18
272 502 2.159272 GACGCTGCAACGGAACACTC 62.159 60.000 14.82 0.00 37.37 3.51
273 503 2.243957 CGCTGCAACGGAACACTCA 61.244 57.895 0.45 0.00 0.00 3.41
274 504 1.771073 CGCTGCAACGGAACACTCAA 61.771 55.000 0.45 0.00 0.00 3.02
275 505 0.317020 GCTGCAACGGAACACTCAAC 60.317 55.000 0.00 0.00 0.00 3.18
276 506 1.013596 CTGCAACGGAACACTCAACA 58.986 50.000 0.00 0.00 0.00 3.33
277 507 1.003545 CTGCAACGGAACACTCAACAG 60.004 52.381 0.00 0.00 0.00 3.16
278 508 0.317020 GCAACGGAACACTCAACAGC 60.317 55.000 0.00 0.00 0.00 4.40
329 561 4.162690 GGCTCCCGGAGTTGCGAT 62.163 66.667 16.09 0.00 31.39 4.58
461 694 2.510918 GCTAGGCGACGGGTTTCC 60.511 66.667 0.00 0.00 0.00 3.13
470 703 4.038080 CGGGTTTCCTGGCGTTGC 62.038 66.667 0.00 0.00 0.00 4.17
547 780 1.067635 GGGACGCAATGCATGTTTCTT 60.068 47.619 5.91 0.00 0.00 2.52
561 794 1.266718 GTTTCTTTGCAGCATCACCGA 59.733 47.619 0.00 0.00 0.00 4.69
565 798 0.882484 TTTGCAGCATCACCGACGAA 60.882 50.000 0.00 0.00 0.00 3.85
573 806 2.518836 ATCACCGACGAACGACGACC 62.519 60.000 18.27 0.00 45.77 4.79
574 807 4.374702 ACCGACGAACGACGACCG 62.375 66.667 18.27 6.98 45.77 4.79
593 848 3.411351 CGAAAGACGTGGTGGCCG 61.411 66.667 0.00 0.00 37.22 6.13
643 899 4.500116 GGAGTGCGGGAGAGCGAC 62.500 72.222 0.00 0.00 40.67 5.19
651 907 4.632458 GGAGAGCGACGCGGGATC 62.632 72.222 15.18 10.58 0.00 3.36
658 914 3.823330 GACGCGGGATCCACGAGT 61.823 66.667 27.37 25.68 46.53 4.18
681 937 2.431771 CGCGACGGTTGTGATGGA 60.432 61.111 0.00 0.00 0.00 3.41
700 956 1.515519 GCGCATCTAACGGTCGTGA 60.516 57.895 0.30 0.00 0.00 4.35
706 962 1.804326 CTAACGGTCGTGAAGGCGG 60.804 63.158 0.00 0.00 0.00 6.13
711 967 1.153429 GGTCGTGAAGGCGGCTTAT 60.153 57.895 25.59 2.79 36.62 1.73
749 1006 0.108945 GGTTTACGCCTAGCACTCGT 60.109 55.000 0.00 0.00 39.88 4.18
750 1007 1.266466 GTTTACGCCTAGCACTCGTC 58.734 55.000 0.00 0.00 37.61 4.20
751 1008 1.135460 GTTTACGCCTAGCACTCGTCT 60.135 52.381 0.00 0.00 37.61 4.18
752 1009 1.171308 TTACGCCTAGCACTCGTCTT 58.829 50.000 0.00 0.00 37.61 3.01
753 1010 0.450583 TACGCCTAGCACTCGTCTTG 59.549 55.000 0.00 0.00 37.61 3.02
754 1011 2.161486 CGCCTAGCACTCGTCTTGC 61.161 63.158 0.00 0.00 40.52 4.01
755 1012 2.161486 GCCTAGCACTCGTCTTGCG 61.161 63.158 0.00 0.00 45.15 4.85
756 1013 1.213013 CCTAGCACTCGTCTTGCGT 59.787 57.895 0.00 0.00 45.15 5.24
757 1014 1.073216 CCTAGCACTCGTCTTGCGTG 61.073 60.000 0.00 0.00 45.15 5.34
758 1015 0.387367 CTAGCACTCGTCTTGCGTGT 60.387 55.000 0.00 0.00 46.47 4.49
759 1016 0.876399 TAGCACTCGTCTTGCGTGTA 59.124 50.000 0.00 0.00 44.17 2.90
761 1018 0.161024 GCACTCGTCTTGCGTGTAAC 59.839 55.000 0.00 0.00 44.17 2.50
762 1019 1.767289 CACTCGTCTTGCGTGTAACT 58.233 50.000 0.00 0.00 44.17 2.24
764 1021 1.607628 ACTCGTCTTGCGTGTAACTCT 59.392 47.619 0.00 0.00 44.16 3.24
765 1022 2.034305 ACTCGTCTTGCGTGTAACTCTT 59.966 45.455 0.00 0.00 44.16 2.85
766 1023 3.050619 CTCGTCTTGCGTGTAACTCTTT 58.949 45.455 0.00 0.00 42.13 2.52
767 1024 4.224433 CTCGTCTTGCGTGTAACTCTTTA 58.776 43.478 0.00 0.00 42.13 1.85
768 1025 4.801891 TCGTCTTGCGTGTAACTCTTTAT 58.198 39.130 0.00 0.00 42.13 1.40
769 1026 5.941733 TCGTCTTGCGTGTAACTCTTTATA 58.058 37.500 0.00 0.00 42.13 0.98
771 1028 5.570206 CGTCTTGCGTGTAACTCTTTATACA 59.430 40.000 0.00 0.00 30.62 2.29
772 1029 6.252869 CGTCTTGCGTGTAACTCTTTATACAT 59.747 38.462 0.00 0.00 34.77 2.29
773 1030 7.201410 CGTCTTGCGTGTAACTCTTTATACATT 60.201 37.037 0.00 0.00 34.77 2.71
774 1031 8.440833 GTCTTGCGTGTAACTCTTTATACATTT 58.559 33.333 0.00 0.00 34.77 2.32
775 1032 9.642327 TCTTGCGTGTAACTCTTTATACATTTA 57.358 29.630 0.00 0.00 34.77 1.40
778 1035 7.546316 TGCGTGTAACTCTTTATACATTTAGCA 59.454 33.333 0.00 0.00 34.77 3.49
802 1059 3.713858 TTGATTGAATAATGCCAGCCG 57.286 42.857 0.00 0.00 0.00 5.52
803 1060 1.337703 TGATTGAATAATGCCAGCCGC 59.662 47.619 0.00 0.00 38.31 6.53
811 1068 4.423112 TGCCAGCCGCATGCCTAA 62.423 61.111 13.15 0.00 44.64 2.69
812 1069 3.892581 GCCAGCCGCATGCCTAAC 61.893 66.667 13.15 0.00 42.71 2.34
813 1070 2.438254 CCAGCCGCATGCCTAACA 60.438 61.111 13.15 0.00 42.71 2.41
814 1071 2.764314 CCAGCCGCATGCCTAACAC 61.764 63.158 13.15 0.00 42.71 3.32
815 1072 2.438434 AGCCGCATGCCTAACACC 60.438 61.111 13.15 0.00 42.71 4.16
816 1073 3.518068 GCCGCATGCCTAACACCC 61.518 66.667 13.15 0.00 0.00 4.61
817 1074 3.202001 CCGCATGCCTAACACCCG 61.202 66.667 13.15 0.00 0.00 5.28
818 1075 3.876198 CGCATGCCTAACACCCGC 61.876 66.667 13.15 0.00 0.00 6.13
819 1076 2.438434 GCATGCCTAACACCCGCT 60.438 61.111 6.36 0.00 0.00 5.52
820 1077 2.046285 GCATGCCTAACACCCGCTT 61.046 57.895 6.36 0.00 0.00 4.68
822 1079 1.745232 CATGCCTAACACCCGCTTAA 58.255 50.000 0.00 0.00 0.00 1.85
824 1081 0.675522 TGCCTAACACCCGCTTAAGC 60.676 55.000 17.83 17.83 37.78 3.09
825 1082 1.374343 GCCTAACACCCGCTTAAGCC 61.374 60.000 21.53 4.46 37.91 4.35
826 1083 0.252197 CCTAACACCCGCTTAAGCCT 59.748 55.000 21.53 1.48 37.91 4.58
827 1084 1.653151 CTAACACCCGCTTAAGCCTC 58.347 55.000 21.53 0.00 37.91 4.70
828 1085 0.108520 TAACACCCGCTTAAGCCTCG 60.109 55.000 21.53 11.16 37.91 4.63
829 1086 2.511600 CACCCGCTTAAGCCTCGG 60.512 66.667 21.53 19.06 42.58 4.63
830 1087 2.682494 ACCCGCTTAAGCCTCGGA 60.682 61.111 21.53 0.00 45.53 4.55
832 1089 1.595382 CCCGCTTAAGCCTCGGATG 60.595 63.158 21.53 5.63 45.53 3.51
833 1090 1.595382 CCGCTTAAGCCTCGGATGG 60.595 63.158 21.53 11.03 45.53 3.51
834 1091 1.441729 CGCTTAAGCCTCGGATGGA 59.558 57.895 21.53 0.00 37.91 3.41
836 1093 0.466124 GCTTAAGCCTCGGATGGACT 59.534 55.000 17.00 0.00 34.31 3.85
837 1094 1.539280 GCTTAAGCCTCGGATGGACTC 60.539 57.143 17.00 0.00 34.31 3.36
838 1095 0.744874 TTAAGCCTCGGATGGACTCG 59.255 55.000 0.00 0.00 0.00 4.18
841 1098 1.175983 AGCCTCGGATGGACTCGATC 61.176 60.000 0.00 0.00 34.77 3.69
842 1099 1.576920 CCTCGGATGGACTCGATCG 59.423 63.158 9.36 9.36 34.77 3.69
843 1100 1.081774 CTCGGATGGACTCGATCGC 60.082 63.158 11.09 0.00 34.77 4.58
844 1101 1.511318 CTCGGATGGACTCGATCGCT 61.511 60.000 11.09 0.00 34.77 4.93
845 1102 1.081774 CGGATGGACTCGATCGCTC 60.082 63.158 11.09 7.15 0.00 5.03
847 1104 0.239879 GGATGGACTCGATCGCTCTC 59.760 60.000 11.09 4.14 0.00 3.20
851 1108 0.030101 GGACTCGATCGCTCTCTTGG 59.970 60.000 11.09 0.00 0.00 3.61
852 1109 0.030101 GACTCGATCGCTCTCTTGGG 59.970 60.000 11.09 0.00 0.00 4.12
853 1110 0.394488 ACTCGATCGCTCTCTTGGGA 60.394 55.000 11.09 0.00 0.00 4.37
854 1111 0.310543 CTCGATCGCTCTCTTGGGAG 59.689 60.000 11.09 0.00 40.73 4.30
860 1117 2.581354 CTCTCTTGGGAGCGTGGG 59.419 66.667 0.00 0.00 39.31 4.61
861 1118 3.003173 TCTCTTGGGAGCGTGGGG 61.003 66.667 0.00 0.00 39.31 4.96
862 1119 4.785453 CTCTTGGGAGCGTGGGGC 62.785 72.222 0.00 0.00 44.05 5.80
872 1129 2.109126 GCGTGGGGCAGACATCTTC 61.109 63.158 0.00 0.00 42.87 2.87
873 1130 1.296392 CGTGGGGCAGACATCTTCA 59.704 57.895 0.00 0.00 0.00 3.02
874 1131 0.321564 CGTGGGGCAGACATCTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
875 1132 1.168714 GTGGGGCAGACATCTTCAAC 58.831 55.000 0.00 0.00 0.00 3.18
877 1134 1.271543 TGGGGCAGACATCTTCAACTG 60.272 52.381 0.00 0.00 0.00 3.16
898 1155 2.394708 CAAGTGTGCGAGGATATACGG 58.605 52.381 0.00 0.00 0.00 4.02
902 1159 2.333389 GTGCGAGGATATACGGACAG 57.667 55.000 13.09 0.00 46.59 3.51
903 1160 1.068472 GTGCGAGGATATACGGACAGG 60.068 57.143 13.09 0.00 46.59 4.00
904 1161 0.109226 GCGAGGATATACGGACAGGC 60.109 60.000 0.00 0.00 0.00 4.85
906 1163 1.068472 CGAGGATATACGGACAGGCAC 60.068 57.143 0.00 0.00 0.00 5.01
907 1164 0.959553 AGGATATACGGACAGGCACG 59.040 55.000 0.00 0.00 0.00 5.34
909 1166 1.068472 GGATATACGGACAGGCACGAG 60.068 57.143 0.00 0.00 0.00 4.18
910 1167 0.959553 ATATACGGACAGGCACGAGG 59.040 55.000 0.00 0.00 0.00 4.63
911 1168 1.105167 TATACGGACAGGCACGAGGG 61.105 60.000 0.00 0.00 0.00 4.30
914 1171 4.101448 GGACAGGCACGAGGGCAT 62.101 66.667 0.00 0.00 46.44 4.40
917 1174 2.584064 CAGGCACGAGGGCATGTA 59.416 61.111 3.59 0.00 46.44 2.29
918 1175 1.146930 CAGGCACGAGGGCATGTAT 59.853 57.895 3.59 0.00 46.44 2.29
919 1176 0.392706 CAGGCACGAGGGCATGTATA 59.607 55.000 3.59 0.00 46.44 1.47
920 1177 1.128200 AGGCACGAGGGCATGTATAA 58.872 50.000 0.00 0.00 46.44 0.98
922 1179 2.092646 AGGCACGAGGGCATGTATAAAA 60.093 45.455 0.00 0.00 46.44 1.52
923 1180 2.884639 GGCACGAGGGCATGTATAAAAT 59.115 45.455 0.00 0.00 42.77 1.82
924 1181 3.304659 GGCACGAGGGCATGTATAAAATG 60.305 47.826 0.00 0.00 42.77 2.32
925 1182 3.315191 GCACGAGGGCATGTATAAAATGT 59.685 43.478 0.00 0.00 0.00 2.71
926 1183 4.554723 GCACGAGGGCATGTATAAAATGTC 60.555 45.833 0.00 0.00 0.00 3.06
927 1184 4.816385 CACGAGGGCATGTATAAAATGTCT 59.184 41.667 0.00 0.28 30.25 3.41
928 1185 5.296780 CACGAGGGCATGTATAAAATGTCTT 59.703 40.000 0.00 0.00 30.25 3.01
929 1186 5.885912 ACGAGGGCATGTATAAAATGTCTTT 59.114 36.000 0.00 0.00 30.25 2.52
931 1188 6.469782 AGGGCATGTATAAAATGTCTTTGG 57.530 37.500 0.00 0.00 30.25 3.28
933 1190 6.840705 AGGGCATGTATAAAATGTCTTTGGAT 59.159 34.615 0.00 0.00 30.25 3.41
935 1192 7.014615 GGGCATGTATAAAATGTCTTTGGATCT 59.985 37.037 0.00 0.00 30.25 2.75
936 1193 7.864379 GGCATGTATAAAATGTCTTTGGATCTG 59.136 37.037 0.00 0.00 0.00 2.90
937 1194 8.408601 GCATGTATAAAATGTCTTTGGATCTGT 58.591 33.333 0.00 0.00 0.00 3.41
942 1199 5.376854 AAATGTCTTTGGATCTGTTTCGG 57.623 39.130 0.00 0.00 0.00 4.30
944 1201 4.079980 TGTCTTTGGATCTGTTTCGGAA 57.920 40.909 0.00 0.00 0.00 4.30
948 1205 3.889196 TTGGATCTGTTTCGGAAAACG 57.111 42.857 4.46 0.00 46.39 3.60
949 1206 2.841215 TGGATCTGTTTCGGAAAACGT 58.159 42.857 4.46 0.00 46.39 3.99
952 1209 3.002965 GGATCTGTTTCGGAAAACGTTGT 59.997 43.478 0.00 0.00 46.39 3.32
953 1210 3.392769 TCTGTTTCGGAAAACGTTGTG 57.607 42.857 0.00 0.00 46.39 3.33
954 1211 3.001414 TCTGTTTCGGAAAACGTTGTGA 58.999 40.909 0.00 0.00 46.39 3.58
955 1212 3.436015 TCTGTTTCGGAAAACGTTGTGAA 59.564 39.130 0.00 0.99 46.39 3.18
956 1213 4.083431 TCTGTTTCGGAAAACGTTGTGAAA 60.083 37.500 0.00 7.42 46.39 2.69
957 1214 3.913163 TGTTTCGGAAAACGTTGTGAAAC 59.087 39.130 25.24 25.24 46.39 2.78
958 1215 4.160594 GTTTCGGAAAACGTTGTGAAACT 58.839 39.130 24.97 1.77 44.69 2.66
959 1216 3.392769 TCGGAAAACGTTGTGAAACTG 57.607 42.857 0.00 0.00 44.69 3.16
962 1219 3.246619 GGAAAACGTTGTGAAACTGCAA 58.753 40.909 0.00 0.00 38.04 4.08
963 1220 3.303229 GGAAAACGTTGTGAAACTGCAAG 59.697 43.478 0.00 0.00 38.04 4.01
985 1242 4.360027 CGAGCACGCACACTGCAC 62.360 66.667 0.00 0.00 45.36 4.57
986 1243 3.271586 GAGCACGCACACTGCACA 61.272 61.111 0.00 0.00 45.36 4.57
987 1244 3.232645 GAGCACGCACACTGCACAG 62.233 63.158 0.00 0.00 45.36 3.66
988 1245 4.969604 GCACGCACACTGCACAGC 62.970 66.667 0.00 0.00 45.36 4.40
994 1251 4.552365 ACACTGCACAGCGCCACT 62.552 61.111 2.29 0.00 41.33 4.00
1056 1314 2.034687 ATGGCGTCCTTGCAGCTT 59.965 55.556 0.00 0.00 36.28 3.74
1584 1856 1.966451 CCCGGTGAACCTCAGCAAC 60.966 63.158 0.00 0.00 44.51 4.17
2120 2418 0.034896 GAGCTCGTGAAGAACCCCAA 59.965 55.000 0.00 0.00 0.00 4.12
2337 2640 1.406887 GGTACCATGGTGCTCGTCAAT 60.407 52.381 28.95 1.15 0.00 2.57
2445 2763 2.147387 GGGGGCGGACATGGAGTAT 61.147 63.158 0.00 0.00 0.00 2.12
2693 3019 1.683917 CTAGCTAGCCAGGTTCGACAT 59.316 52.381 12.13 0.00 33.61 3.06
2700 3026 0.107848 CCAGGTTCGACATGGGGTAC 60.108 60.000 9.82 0.00 45.60 3.34
2793 3122 9.738832 TTCACAGTTTATTTTAACACTTTAGGC 57.261 29.630 0.00 0.00 0.00 3.93
2794 3123 9.127277 TCACAGTTTATTTTAACACTTTAGGCT 57.873 29.630 0.00 0.00 0.00 4.58
2795 3124 9.744468 CACAGTTTATTTTAACACTTTAGGCTT 57.256 29.630 0.00 0.00 0.00 4.35
2796 3125 9.961265 ACAGTTTATTTTAACACTTTAGGCTTC 57.039 29.630 0.00 0.00 0.00 3.86
2797 3126 9.113876 CAGTTTATTTTAACACTTTAGGCTTCG 57.886 33.333 0.00 0.00 0.00 3.79
2798 3127 8.843262 AGTTTATTTTAACACTTTAGGCTTCGT 58.157 29.630 0.00 0.00 0.00 3.85
2799 3128 9.454585 GTTTATTTTAACACTTTAGGCTTCGTT 57.545 29.630 0.00 0.00 0.00 3.85
2801 3130 7.924103 ATTTTAACACTTTAGGCTTCGTTTG 57.076 32.000 0.00 0.00 0.00 2.93
2802 3131 3.982576 AACACTTTAGGCTTCGTTTGG 57.017 42.857 0.00 0.00 0.00 3.28
2803 3132 1.607148 ACACTTTAGGCTTCGTTTGGC 59.393 47.619 0.00 0.00 0.00 4.52
2804 3133 1.606668 CACTTTAGGCTTCGTTTGGCA 59.393 47.619 0.00 0.00 0.00 4.92
2805 3134 1.880027 ACTTTAGGCTTCGTTTGGCAG 59.120 47.619 0.00 0.00 0.00 4.85
2806 3135 0.596082 TTTAGGCTTCGTTTGGCAGC 59.404 50.000 0.00 0.00 0.00 5.25
2807 3136 0.536233 TTAGGCTTCGTTTGGCAGCA 60.536 50.000 0.00 0.00 35.05 4.41
2808 3137 0.536233 TAGGCTTCGTTTGGCAGCAA 60.536 50.000 0.00 0.00 35.05 3.91
2809 3138 1.067250 GGCTTCGTTTGGCAGCAAA 59.933 52.632 0.00 0.00 35.05 3.68
2810 3139 0.940991 GGCTTCGTTTGGCAGCAAAG 60.941 55.000 0.00 0.00 35.05 2.77
2811 3140 0.249031 GCTTCGTTTGGCAGCAAAGT 60.249 50.000 0.00 0.00 33.45 2.66
2812 3141 1.802508 GCTTCGTTTGGCAGCAAAGTT 60.803 47.619 0.00 0.00 33.45 2.66
2813 3142 2.539476 CTTCGTTTGGCAGCAAAGTTT 58.461 42.857 0.00 0.00 0.00 2.66
2814 3143 2.663826 TCGTTTGGCAGCAAAGTTTT 57.336 40.000 0.00 0.00 0.00 2.43
2815 3144 2.966050 TCGTTTGGCAGCAAAGTTTTT 58.034 38.095 0.00 0.00 0.00 1.94
2846 3175 5.838531 TTTTTGACAATACCACGGTTTCT 57.161 34.783 0.00 0.00 0.00 2.52
2847 3176 4.822036 TTTGACAATACCACGGTTTCTG 57.178 40.909 0.00 0.00 0.00 3.02
2848 3177 2.773487 TGACAATACCACGGTTTCTGG 58.227 47.619 0.00 0.00 34.62 3.86
2849 3178 2.369203 TGACAATACCACGGTTTCTGGA 59.631 45.455 0.00 0.00 32.55 3.86
2850 3179 3.181453 TGACAATACCACGGTTTCTGGAA 60.181 43.478 0.00 0.00 32.55 3.53
2851 3180 3.816523 GACAATACCACGGTTTCTGGAAA 59.183 43.478 0.00 0.00 32.55 3.13
2852 3181 4.208746 ACAATACCACGGTTTCTGGAAAA 58.791 39.130 0.00 0.00 32.55 2.29
2853 3182 4.645588 ACAATACCACGGTTTCTGGAAAAA 59.354 37.500 0.00 0.00 32.55 1.94
2881 3210 9.439500 AAAACCATGATTTTGAATACTTGGATG 57.561 29.630 0.00 0.00 33.66 3.51
2882 3211 6.576185 ACCATGATTTTGAATACTTGGATGC 58.424 36.000 0.00 0.00 33.66 3.91
2883 3212 5.688621 CCATGATTTTGAATACTTGGATGCG 59.311 40.000 0.00 0.00 31.94 4.73
2884 3213 5.895636 TGATTTTGAATACTTGGATGCGT 57.104 34.783 0.00 0.00 0.00 5.24
2885 3214 6.266168 TGATTTTGAATACTTGGATGCGTT 57.734 33.333 0.00 0.00 0.00 4.84
2886 3215 6.686630 TGATTTTGAATACTTGGATGCGTTT 58.313 32.000 0.00 0.00 0.00 3.60
2887 3216 6.585702 TGATTTTGAATACTTGGATGCGTTTG 59.414 34.615 0.00 0.00 0.00 2.93
2888 3217 4.433186 TTGAATACTTGGATGCGTTTGG 57.567 40.909 0.00 0.00 0.00 3.28
2889 3218 2.163412 TGAATACTTGGATGCGTTTGGC 59.837 45.455 0.00 0.00 43.96 4.52
2890 3219 2.128771 ATACTTGGATGCGTTTGGCT 57.871 45.000 0.00 0.00 44.05 4.75
2891 3220 1.904287 TACTTGGATGCGTTTGGCTT 58.096 45.000 0.00 0.00 44.05 4.35
2892 3221 0.598065 ACTTGGATGCGTTTGGCTTC 59.402 50.000 0.00 0.00 44.05 3.86
2893 3222 0.597568 CTTGGATGCGTTTGGCTTCA 59.402 50.000 4.36 0.00 45.14 3.02
2894 3223 0.597568 TTGGATGCGTTTGGCTTCAG 59.402 50.000 4.36 0.00 45.14 3.02
2895 3224 1.153958 GGATGCGTTTGGCTTCAGC 60.154 57.895 4.36 0.00 45.14 4.26
2896 3225 1.580942 GATGCGTTTGGCTTCAGCA 59.419 52.632 0.30 1.47 43.38 4.41
2897 3226 0.039256 GATGCGTTTGGCTTCAGCAA 60.039 50.000 0.30 0.00 43.38 3.91
2898 3227 0.388659 ATGCGTTTGGCTTCAGCAAA 59.611 45.000 0.30 0.00 44.36 3.68
2899 3228 0.174389 TGCGTTTGGCTTCAGCAAAA 59.826 45.000 0.30 0.00 41.32 2.44
2900 3229 1.285578 GCGTTTGGCTTCAGCAAAAA 58.714 45.000 2.79 0.00 44.68 1.94
2901 3230 1.005032 GCGTTTGGCTTCAGCAAAAAC 60.005 47.619 14.77 14.77 44.68 2.43
2902 3231 2.539476 CGTTTGGCTTCAGCAAAAACT 58.461 42.857 19.22 0.00 44.68 2.66
2903 3232 3.701241 CGTTTGGCTTCAGCAAAAACTA 58.299 40.909 19.22 0.00 44.68 2.24
2904 3233 4.109050 CGTTTGGCTTCAGCAAAAACTAA 58.891 39.130 19.22 0.00 44.68 2.24
2905 3234 4.744631 CGTTTGGCTTCAGCAAAAACTAAT 59.255 37.500 19.22 0.00 44.68 1.73
2906 3235 5.332506 CGTTTGGCTTCAGCAAAAACTAATG 60.333 40.000 19.22 7.27 44.68 1.90
2907 3236 4.935352 TGGCTTCAGCAAAAACTAATGT 57.065 36.364 0.30 0.00 44.36 2.71
2908 3237 5.275067 TGGCTTCAGCAAAAACTAATGTT 57.725 34.783 0.30 0.00 44.36 2.71
2909 3238 5.669477 TGGCTTCAGCAAAAACTAATGTTT 58.331 33.333 0.30 0.00 44.56 2.83
2910 3239 6.112058 TGGCTTCAGCAAAAACTAATGTTTT 58.888 32.000 0.30 1.61 45.84 2.43
2911 3240 6.036953 TGGCTTCAGCAAAAACTAATGTTTTG 59.963 34.615 7.52 5.69 46.51 2.44
2912 3241 6.037062 GGCTTCAGCAAAAACTAATGTTTTGT 59.963 34.615 7.52 0.00 46.51 2.83
2913 3242 7.223777 GGCTTCAGCAAAAACTAATGTTTTGTA 59.776 33.333 7.52 0.00 46.51 2.41
2934 3263 9.984190 TTTGTAAACCACATTATCCTAAAAACC 57.016 29.630 0.00 0.00 36.90 3.27
2935 3264 8.707796 TGTAAACCACATTATCCTAAAAACCA 57.292 30.769 0.00 0.00 30.04 3.67
2936 3265 8.578151 TGTAAACCACATTATCCTAAAAACCAC 58.422 33.333 0.00 0.00 30.04 4.16
2937 3266 5.890424 ACCACATTATCCTAAAAACCACG 57.110 39.130 0.00 0.00 0.00 4.94
2938 3267 5.318630 ACCACATTATCCTAAAAACCACGT 58.681 37.500 0.00 0.00 0.00 4.49
2939 3268 5.771165 ACCACATTATCCTAAAAACCACGTT 59.229 36.000 0.00 0.00 0.00 3.99
2940 3269 6.265876 ACCACATTATCCTAAAAACCACGTTT 59.734 34.615 0.00 0.00 37.34 3.60
2941 3270 7.149307 CCACATTATCCTAAAAACCACGTTTT 58.851 34.615 0.00 0.00 45.94 2.43
2965 3294 5.843019 TTTGGAGTATCTGGAAAAGAGGT 57.157 39.130 0.00 0.00 38.67 3.85
2966 3295 5.422214 TTGGAGTATCTGGAAAAGAGGTC 57.578 43.478 0.00 0.00 38.67 3.85
2967 3296 3.447586 TGGAGTATCTGGAAAAGAGGTCG 59.552 47.826 0.00 0.00 38.67 4.79
2968 3297 3.181474 GGAGTATCTGGAAAAGAGGTCGG 60.181 52.174 0.00 0.00 38.67 4.79
2969 3298 2.766828 AGTATCTGGAAAAGAGGTCGGG 59.233 50.000 0.00 0.00 38.67 5.14
2970 3299 1.952621 ATCTGGAAAAGAGGTCGGGA 58.047 50.000 0.00 0.00 38.67 5.14
3031 3360 2.388232 GGCGCTCATCCGACGTTTT 61.388 57.895 7.64 0.00 0.00 2.43
3046 3375 1.072505 TTTTGACGAGCCCCTCACC 59.927 57.895 0.00 0.00 0.00 4.02
3128 3457 4.115199 GCAGGATGGCCGGACCTT 62.115 66.667 3.83 3.61 40.22 3.50
3161 3490 0.872021 GACCGCAGCTTAGTGGATCG 60.872 60.000 10.44 0.00 41.75 3.69
3170 3499 5.647589 CAGCTTAGTGGATCGTGTTAGTTA 58.352 41.667 0.00 0.00 0.00 2.24
3179 3508 5.640357 TGGATCGTGTTAGTTAACCATTGTC 59.360 40.000 0.88 0.00 35.37 3.18
3228 3557 3.118847 AGCCGGCTAGAGTTAGGTTTTAC 60.119 47.826 31.86 0.00 0.00 2.01
3268 3597 3.841379 TAGTGGCATCGATCGGCGC 62.841 63.158 16.41 17.27 40.61 6.53
3292 3621 1.279025 ACATCTTGGGGCGTATGGGT 61.279 55.000 0.00 0.00 0.00 4.51
3301 3631 1.078426 GCGTATGGGTGGTTCTGCT 60.078 57.895 0.00 0.00 0.00 4.24
3317 3647 1.454479 GCTGTGCCCATGGTAGCAT 60.454 57.895 17.30 0.40 41.86 3.79
3338 3668 4.866508 TGGATGTGTACTTCTTCGTTCT 57.133 40.909 0.00 0.00 0.00 3.01
3378 3708 0.468226 TGCTTGTCGGAGAAACACCT 59.532 50.000 0.00 0.00 39.69 4.00
3386 3716 0.890996 GGAGAAACACCTGTGGCCAG 60.891 60.000 5.11 0.00 38.50 4.85
3405 3735 3.557898 CCAGATGAGTAGCACACCAAACT 60.558 47.826 0.00 0.00 0.00 2.66
3431 3761 2.183478 TGATGAACTGGAACGTGCAT 57.817 45.000 0.00 0.00 34.73 3.96
3452 3782 1.578926 CATGAACTCGCCGGCAAAA 59.421 52.632 28.98 10.33 0.00 2.44
3476 3806 0.665670 CTACCATCTGCCAGATCGCG 60.666 60.000 3.68 0.00 31.32 5.87
3478 3808 1.664017 CCATCTGCCAGATCGCGAG 60.664 63.158 16.66 0.99 31.32 5.03
3487 3817 4.819761 GATCGCGAGCAGCCACCA 62.820 66.667 21.13 0.00 44.76 4.17
3488 3818 4.166888 ATCGCGAGCAGCCACCAT 62.167 61.111 16.66 0.00 44.76 3.55
3495 3825 0.181114 GAGCAGCCACCATGTATCCA 59.819 55.000 0.00 0.00 0.00 3.41
3512 3842 1.378119 CATGCTCTGCCTGCAGGAA 60.378 57.895 37.21 26.78 43.76 3.36
3533 3863 5.932883 GGAAACGAAGATAGAAAACTGGTCT 59.067 40.000 0.00 0.00 0.00 3.85
3534 3864 6.427242 GGAAACGAAGATAGAAAACTGGTCTT 59.573 38.462 0.00 0.00 32.23 3.01
3542 3872 1.468914 GAAAACTGGTCTTCGGCCATC 59.531 52.381 2.24 0.00 35.19 3.51
3548 3878 1.445582 GTCTTCGGCCATCGTTCGT 60.446 57.895 2.24 0.00 40.32 3.85
3550 3880 2.433491 TTCGGCCATCGTTCGTGG 60.433 61.111 2.24 8.59 40.32 4.94
3656 3986 3.490759 CTGGACATCCGCACGCAC 61.491 66.667 0.00 0.00 39.43 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.040278 TGCCTGTGCAGAAATAAGGACT 59.960 45.455 0.02 0.00 44.23 3.85
15 16 2.331451 GACCGTTGTTGCCTGTGC 59.669 61.111 0.00 0.00 38.26 4.57
33 34 1.541588 CCCAGTTGCAAAACCTCTAGC 59.458 52.381 0.00 0.00 0.00 3.42
35 36 1.203001 CCCCCAGTTGCAAAACCTCTA 60.203 52.381 0.00 0.00 0.00 2.43
83 84 2.094675 CCTCAATGGTTGCCCTTGTAG 58.905 52.381 3.76 1.57 0.00 2.74
84 85 1.890573 GCCTCAATGGTTGCCCTTGTA 60.891 52.381 3.76 0.00 38.35 2.41
168 216 3.710722 AACTCTGGGAGCCGCTGG 61.711 66.667 0.00 0.00 32.04 4.85
178 226 1.703438 GAGCTGCATCGCAACTCTGG 61.703 60.000 11.19 0.00 45.05 3.86
180 228 1.449246 GGAGCTGCATCGCAACTCT 60.449 57.895 16.43 2.81 46.86 3.24
184 233 4.081185 TCGGGAGCTGCATCGCAA 62.081 61.111 7.79 0.00 38.41 4.85
210 259 4.007644 CCGCTGGTGAGTGCTCCA 62.008 66.667 0.00 0.00 36.34 3.86
267 497 2.031163 GGAGCCGCTGTTGAGTGT 59.969 61.111 0.00 0.00 0.00 3.55
269 499 4.379243 CGGGAGCCGCTGTTGAGT 62.379 66.667 0.00 0.00 41.17 3.41
312 544 2.792947 TATCGCAACTCCGGGAGCC 61.793 63.158 23.84 11.35 32.04 4.70
317 549 0.872021 GAGCTGTATCGCAACTCCGG 60.872 60.000 0.00 0.00 34.99 5.14
320 552 0.175760 TGGGAGCTGTATCGCAACTC 59.824 55.000 0.00 0.00 38.98 3.01
321 553 0.176680 CTGGGAGCTGTATCGCAACT 59.823 55.000 0.00 0.00 41.06 3.16
323 555 1.153369 GCTGGGAGCTGTATCGCAA 60.153 57.895 0.00 0.00 41.06 4.85
324 556 2.501128 GCTGGGAGCTGTATCGCA 59.499 61.111 0.00 0.00 38.45 5.10
326 558 2.659897 GCGCTGGGAGCTGTATCG 60.660 66.667 0.00 0.00 39.60 2.92
327 559 2.818132 AGCGCTGGGAGCTGTATC 59.182 61.111 10.39 0.00 44.22 2.24
379 612 1.163420 AACACCGAGCGTTGCATTGA 61.163 50.000 0.00 0.00 0.00 2.57
387 620 2.616330 CCATTGCAACACCGAGCGT 61.616 57.895 0.00 0.00 0.00 5.07
461 694 4.824166 GCTGCATCGCAACGCCAG 62.824 66.667 0.00 0.00 38.41 4.85
547 780 1.301322 TTCGTCGGTGATGCTGCAA 60.301 52.632 6.36 0.00 0.00 4.08
565 798 3.663176 TCTTTCGCCGGTCGTCGT 61.663 61.111 16.00 0.00 39.67 4.34
573 806 3.411351 CCACCACGTCTTTCGCCG 61.411 66.667 0.00 0.00 44.19 6.46
574 807 3.723348 GCCACCACGTCTTTCGCC 61.723 66.667 0.00 0.00 44.19 5.54
575 808 3.723348 GGCCACCACGTCTTTCGC 61.723 66.667 0.00 0.00 44.19 4.70
577 810 3.047877 CCGGCCACCACGTCTTTC 61.048 66.667 2.24 0.00 0.00 2.62
593 848 2.825836 CCCTCAACATCCGCAGCC 60.826 66.667 0.00 0.00 0.00 4.85
651 907 1.461317 CGTCGCGTTATGACTCGTGG 61.461 60.000 5.77 0.00 35.59 4.94
653 909 1.226211 CCGTCGCGTTATGACTCGT 60.226 57.895 5.77 0.00 35.59 4.18
658 914 0.039346 TCACAACCGTCGCGTTATGA 60.039 50.000 5.77 0.00 26.90 2.15
681 937 1.516386 CACGACCGTTAGATGCGCT 60.516 57.895 9.73 0.00 0.00 5.92
700 956 2.092323 GAGGAAAACATAAGCCGCCTT 58.908 47.619 0.00 0.00 35.05 4.35
706 962 5.572896 CGGTTGATTTGAGGAAAACATAAGC 59.427 40.000 0.00 0.00 0.00 3.09
711 967 3.292460 ACCGGTTGATTTGAGGAAAACA 58.708 40.909 0.00 0.00 0.00 2.83
749 1006 8.542497 AAATGTATAAAGAGTTACACGCAAGA 57.458 30.769 0.00 0.00 43.62 3.02
751 1008 8.385111 GCTAAATGTATAAAGAGTTACACGCAA 58.615 33.333 0.00 0.00 31.55 4.85
752 1009 7.546316 TGCTAAATGTATAAAGAGTTACACGCA 59.454 33.333 0.00 0.00 31.55 5.24
753 1010 7.902032 TGCTAAATGTATAAAGAGTTACACGC 58.098 34.615 0.00 0.00 31.55 5.34
778 1035 6.392354 CGGCTGGCATTATTCAATCAATAAT 58.608 36.000 1.08 0.00 45.15 1.28
780 1037 4.321156 GCGGCTGGCATTATTCAATCAATA 60.321 41.667 1.08 0.00 42.87 1.90
781 1038 3.553508 GCGGCTGGCATTATTCAATCAAT 60.554 43.478 1.08 0.00 42.87 2.57
782 1039 2.223782 GCGGCTGGCATTATTCAATCAA 60.224 45.455 1.08 0.00 42.87 2.57
799 1056 3.518068 GGGTGTTAGGCATGCGGC 61.518 66.667 12.44 0.00 43.74 6.53
800 1057 3.202001 CGGGTGTTAGGCATGCGG 61.202 66.667 12.44 0.00 0.00 5.69
801 1058 3.876198 GCGGGTGTTAGGCATGCG 61.876 66.667 12.44 0.00 0.00 4.73
802 1059 0.746563 TAAGCGGGTGTTAGGCATGC 60.747 55.000 9.90 9.90 0.00 4.06
803 1060 1.670811 CTTAAGCGGGTGTTAGGCATG 59.329 52.381 0.00 0.00 0.00 4.06
804 1061 2.017113 GCTTAAGCGGGTGTTAGGCAT 61.017 52.381 12.53 0.00 33.76 4.40
805 1062 0.675522 GCTTAAGCGGGTGTTAGGCA 60.676 55.000 12.53 0.00 33.76 4.75
806 1063 1.374343 GGCTTAAGCGGGTGTTAGGC 61.374 60.000 20.80 0.00 43.26 3.93
808 1065 1.653151 GAGGCTTAAGCGGGTGTTAG 58.347 55.000 20.80 0.00 43.26 2.34
811 1068 2.264794 CGAGGCTTAAGCGGGTGT 59.735 61.111 20.80 3.18 43.26 4.16
812 1069 2.311688 ATCCGAGGCTTAAGCGGGTG 62.312 60.000 20.80 10.43 44.87 4.61
813 1070 2.064581 ATCCGAGGCTTAAGCGGGT 61.065 57.895 20.80 10.42 44.87 5.28
814 1071 1.595382 CATCCGAGGCTTAAGCGGG 60.595 63.158 20.80 19.94 44.87 6.13
815 1072 1.595382 CCATCCGAGGCTTAAGCGG 60.595 63.158 20.80 16.22 46.08 5.52
816 1073 0.876342 GTCCATCCGAGGCTTAAGCG 60.876 60.000 20.80 7.52 43.26 4.68
817 1074 0.466124 AGTCCATCCGAGGCTTAAGC 59.534 55.000 19.53 19.53 41.14 3.09
818 1075 1.269309 CGAGTCCATCCGAGGCTTAAG 60.269 57.143 0.00 0.00 0.00 1.85
819 1076 0.744874 CGAGTCCATCCGAGGCTTAA 59.255 55.000 0.00 0.00 0.00 1.85
820 1077 0.106868 TCGAGTCCATCCGAGGCTTA 60.107 55.000 0.00 0.00 0.00 3.09
822 1079 1.152652 ATCGAGTCCATCCGAGGCT 60.153 57.895 0.00 0.00 38.25 4.58
824 1081 1.576920 CGATCGAGTCCATCCGAGG 59.423 63.158 10.26 0.00 38.25 4.63
825 1082 1.081774 GCGATCGAGTCCATCCGAG 60.082 63.158 21.57 0.00 38.25 4.63
826 1083 1.507974 GAGCGATCGAGTCCATCCGA 61.508 60.000 21.57 0.00 39.25 4.55
827 1084 1.081774 GAGCGATCGAGTCCATCCG 60.082 63.158 21.57 0.00 0.00 4.18
828 1085 0.239879 GAGAGCGATCGAGTCCATCC 59.760 60.000 21.57 0.00 0.00 3.51
829 1086 1.234821 AGAGAGCGATCGAGTCCATC 58.765 55.000 21.57 8.88 0.00 3.51
830 1087 1.336440 CAAGAGAGCGATCGAGTCCAT 59.664 52.381 21.57 3.14 0.00 3.41
832 1089 0.030101 CCAAGAGAGCGATCGAGTCC 59.970 60.000 21.57 8.49 0.00 3.85
833 1090 0.030101 CCCAAGAGAGCGATCGAGTC 59.970 60.000 21.57 14.41 0.00 3.36
834 1091 0.394488 TCCCAAGAGAGCGATCGAGT 60.394 55.000 21.57 4.39 0.00 4.18
836 1093 2.409399 CTCCCAAGAGAGCGATCGA 58.591 57.895 21.57 0.00 43.39 3.59
843 1100 2.581354 CCCACGCTCCCAAGAGAG 59.419 66.667 0.00 0.00 43.39 3.20
844 1101 3.003173 CCCCACGCTCCCAAGAGA 61.003 66.667 0.00 0.00 43.39 3.10
845 1102 4.785453 GCCCCACGCTCCCAAGAG 62.785 72.222 0.00 0.00 43.57 2.85
851 1108 4.101448 ATGTCTGCCCCACGCTCC 62.101 66.667 0.00 0.00 38.78 4.70
852 1109 2.512515 GATGTCTGCCCCACGCTC 60.513 66.667 0.00 0.00 38.78 5.03
853 1110 2.527951 GAAGATGTCTGCCCCACGCT 62.528 60.000 0.00 0.00 38.78 5.07
854 1111 2.045926 AAGATGTCTGCCCCACGC 60.046 61.111 0.00 0.00 38.31 5.34
855 1112 0.321564 TTGAAGATGTCTGCCCCACG 60.322 55.000 0.00 0.00 0.00 4.94
856 1113 1.168714 GTTGAAGATGTCTGCCCCAC 58.831 55.000 0.00 0.00 0.00 4.61
858 1115 1.457346 CAGTTGAAGATGTCTGCCCC 58.543 55.000 0.00 0.00 0.00 5.80
862 1119 3.562973 ACACTTGCAGTTGAAGATGTCTG 59.437 43.478 3.77 0.00 0.00 3.51
863 1120 3.562973 CACACTTGCAGTTGAAGATGTCT 59.437 43.478 3.77 0.00 0.00 3.41
864 1121 3.881795 CACACTTGCAGTTGAAGATGTC 58.118 45.455 3.77 0.00 0.00 3.06
865 1122 3.976793 CACACTTGCAGTTGAAGATGT 57.023 42.857 3.77 0.00 0.00 3.06
877 1134 1.787155 CGTATATCCTCGCACACTTGC 59.213 52.381 0.00 0.00 46.21 4.01
878 1135 2.034179 TCCGTATATCCTCGCACACTTG 59.966 50.000 0.00 0.00 0.00 3.16
879 1136 2.034305 GTCCGTATATCCTCGCACACTT 59.966 50.000 0.00 0.00 0.00 3.16
880 1137 1.607628 GTCCGTATATCCTCGCACACT 59.392 52.381 0.00 0.00 0.00 3.55
882 1139 1.607148 CTGTCCGTATATCCTCGCACA 59.393 52.381 0.00 0.00 0.00 4.57
883 1140 1.068472 CCTGTCCGTATATCCTCGCAC 60.068 57.143 0.00 0.00 0.00 5.34
885 1142 0.109226 GCCTGTCCGTATATCCTCGC 60.109 60.000 0.00 0.00 0.00 5.03
886 1143 1.068472 GTGCCTGTCCGTATATCCTCG 60.068 57.143 0.00 0.00 0.00 4.63
887 1144 1.068472 CGTGCCTGTCCGTATATCCTC 60.068 57.143 0.00 0.00 0.00 3.71
890 1147 1.068472 CCTCGTGCCTGTCCGTATATC 60.068 57.143 0.00 0.00 0.00 1.63
891 1148 0.959553 CCTCGTGCCTGTCCGTATAT 59.040 55.000 0.00 0.00 0.00 0.86
892 1149 1.105167 CCCTCGTGCCTGTCCGTATA 61.105 60.000 0.00 0.00 0.00 1.47
893 1150 2.423898 CCCTCGTGCCTGTCCGTAT 61.424 63.158 0.00 0.00 0.00 3.06
894 1151 3.066190 CCCTCGTGCCTGTCCGTA 61.066 66.667 0.00 0.00 0.00 4.02
898 1155 2.238847 TACATGCCCTCGTGCCTGTC 62.239 60.000 8.03 0.00 40.07 3.51
900 1157 0.392706 TATACATGCCCTCGTGCCTG 59.607 55.000 0.00 0.00 33.68 4.85
901 1158 1.128200 TTATACATGCCCTCGTGCCT 58.872 50.000 0.00 0.00 32.47 4.75
902 1159 1.961793 TTTATACATGCCCTCGTGCC 58.038 50.000 0.00 0.00 32.47 5.01
903 1160 3.315191 ACATTTTATACATGCCCTCGTGC 59.685 43.478 0.00 0.00 32.47 5.34
904 1161 4.816385 AGACATTTTATACATGCCCTCGTG 59.184 41.667 0.00 0.00 35.37 4.35
906 1163 6.201517 CAAAGACATTTTATACATGCCCTCG 58.798 40.000 0.00 0.00 0.00 4.63
907 1164 6.321181 TCCAAAGACATTTTATACATGCCCTC 59.679 38.462 0.00 0.00 0.00 4.30
909 1166 6.463995 TCCAAAGACATTTTATACATGCCC 57.536 37.500 0.00 0.00 0.00 5.36
910 1167 7.864379 CAGATCCAAAGACATTTTATACATGCC 59.136 37.037 0.00 0.00 0.00 4.40
911 1168 8.408601 ACAGATCCAAAGACATTTTATACATGC 58.591 33.333 0.00 0.00 0.00 4.06
915 1172 9.490663 CGAAACAGATCCAAAGACATTTTATAC 57.509 33.333 0.00 0.00 0.00 1.47
916 1173 8.673711 CCGAAACAGATCCAAAGACATTTTATA 58.326 33.333 0.00 0.00 0.00 0.98
917 1174 7.393234 TCCGAAACAGATCCAAAGACATTTTAT 59.607 33.333 0.00 0.00 0.00 1.40
918 1175 6.712998 TCCGAAACAGATCCAAAGACATTTTA 59.287 34.615 0.00 0.00 0.00 1.52
919 1176 5.534654 TCCGAAACAGATCCAAAGACATTTT 59.465 36.000 0.00 0.00 0.00 1.82
920 1177 5.070001 TCCGAAACAGATCCAAAGACATTT 58.930 37.500 0.00 0.00 0.00 2.32
922 1179 4.286297 TCCGAAACAGATCCAAAGACAT 57.714 40.909 0.00 0.00 0.00 3.06
923 1180 3.762407 TCCGAAACAGATCCAAAGACA 57.238 42.857 0.00 0.00 0.00 3.41
924 1181 5.212934 GTTTTCCGAAACAGATCCAAAGAC 58.787 41.667 0.00 0.00 43.65 3.01
925 1182 4.024387 CGTTTTCCGAAACAGATCCAAAGA 60.024 41.667 0.00 0.00 44.25 2.52
926 1183 4.219033 CGTTTTCCGAAACAGATCCAAAG 58.781 43.478 0.00 0.00 44.25 2.77
927 1184 3.628487 ACGTTTTCCGAAACAGATCCAAA 59.372 39.130 0.00 0.00 44.25 3.28
928 1185 3.207778 ACGTTTTCCGAAACAGATCCAA 58.792 40.909 0.00 0.00 44.25 3.53
929 1186 2.841215 ACGTTTTCCGAAACAGATCCA 58.159 42.857 0.00 0.00 44.25 3.41
931 1188 3.966218 CACAACGTTTTCCGAAACAGATC 59.034 43.478 0.00 0.00 44.25 2.75
933 1190 3.001414 TCACAACGTTTTCCGAAACAGA 58.999 40.909 0.00 0.00 44.25 3.41
935 1192 3.826236 TTCACAACGTTTTCCGAAACA 57.174 38.095 0.00 0.00 44.25 2.83
936 1193 4.029750 CAGTTTCACAACGTTTTCCGAAAC 59.970 41.667 22.00 22.00 41.44 2.78
937 1194 4.159857 CAGTTTCACAACGTTTTCCGAAA 58.840 39.130 0.00 2.66 40.70 3.46
938 1195 3.749404 CAGTTTCACAACGTTTTCCGAA 58.251 40.909 0.00 0.00 40.70 4.30
940 1197 1.843753 GCAGTTTCACAACGTTTTCCG 59.156 47.619 0.00 0.00 44.03 4.30
942 1199 3.917985 ACTTGCAGTTTCACAACGTTTTC 59.082 39.130 0.00 0.00 38.03 2.29
944 1201 3.569250 ACTTGCAGTTTCACAACGTTT 57.431 38.095 0.00 0.00 38.03 3.60
948 1205 2.845967 CGACAACTTGCAGTTTCACAAC 59.154 45.455 0.00 0.00 36.03 3.32
949 1206 2.744741 TCGACAACTTGCAGTTTCACAA 59.255 40.909 0.00 0.00 36.03 3.33
952 1209 1.330521 GCTCGACAACTTGCAGTTTCA 59.669 47.619 0.00 0.00 36.03 2.69
953 1210 1.330521 TGCTCGACAACTTGCAGTTTC 59.669 47.619 0.00 2.00 36.03 2.78
954 1211 1.064060 GTGCTCGACAACTTGCAGTTT 59.936 47.619 0.00 0.00 36.03 2.66
955 1212 0.657840 GTGCTCGACAACTTGCAGTT 59.342 50.000 0.00 0.00 39.39 3.16
956 1213 1.490693 CGTGCTCGACAACTTGCAGT 61.491 55.000 1.00 0.00 39.71 4.40
957 1214 1.202568 CGTGCTCGACAACTTGCAG 59.797 57.895 1.00 0.00 39.71 4.41
958 1215 2.881266 GCGTGCTCGACAACTTGCA 61.881 57.895 13.13 0.00 39.71 4.08
959 1216 2.127609 GCGTGCTCGACAACTTGC 60.128 61.111 13.13 0.00 39.71 4.01
962 1219 2.106131 TGTGCGTGCTCGACAACT 59.894 55.556 13.13 0.00 39.71 3.16
963 1220 2.237751 AGTGTGCGTGCTCGACAAC 61.238 57.895 13.13 7.19 39.71 3.32
964 1221 2.106131 AGTGTGCGTGCTCGACAA 59.894 55.556 13.13 0.00 39.71 3.18
965 1222 2.658268 CAGTGTGCGTGCTCGACA 60.658 61.111 13.13 10.38 39.71 4.35
985 1242 2.879907 CATTTCCCAGTGGCGCTG 59.120 61.111 20.92 20.92 44.63 5.18
986 1243 3.064324 GCATTTCCCAGTGGCGCT 61.064 61.111 7.64 0.00 0.00 5.92
987 1244 4.133796 GGCATTTCCCAGTGGCGC 62.134 66.667 2.61 0.00 0.00 6.53
988 1245 2.676121 TGGCATTTCCCAGTGGCG 60.676 61.111 2.61 0.00 43.15 5.69
994 1251 0.482446 AGGTCAACTGGCATTTCCCA 59.518 50.000 0.00 0.00 0.00 4.37
1056 1314 0.032017 GAGGGAGGAGGAGCTGGTAA 60.032 60.000 0.00 0.00 0.00 2.85
1380 1652 0.033796 TTCCGTCGGGGATAGACAGT 60.034 55.000 12.29 0.00 46.62 3.55
1565 1837 2.448582 TTGCTGAGGTTCACCGGGT 61.449 57.895 6.32 0.00 42.08 5.28
2120 2418 4.115199 GCGCCTTCCCCATCACCT 62.115 66.667 0.00 0.00 0.00 4.00
2337 2640 4.435970 CTGCTGATGGCCCAGGCA 62.436 66.667 11.50 9.72 44.11 4.75
2693 3019 4.891756 GTGACTTGCTACTATAGTACCCCA 59.108 45.833 8.59 4.18 0.00 4.96
2700 3026 5.536538 TCTCCCATGTGACTTGCTACTATAG 59.463 44.000 0.00 0.00 0.00 1.31
2792 3121 0.249031 ACTTTGCTGCCAAACGAAGC 60.249 50.000 0.00 0.00 36.09 3.86
2793 3122 2.208326 AACTTTGCTGCCAAACGAAG 57.792 45.000 0.00 0.00 36.09 3.79
2794 3123 2.663826 AAACTTTGCTGCCAAACGAA 57.336 40.000 0.00 0.00 36.09 3.85
2795 3124 2.663826 AAAACTTTGCTGCCAAACGA 57.336 40.000 0.00 0.00 36.09 3.85
2824 3153 5.450688 CCAGAAACCGTGGTATTGTCAAAAA 60.451 40.000 0.00 0.00 0.00 1.94
2825 3154 4.036971 CCAGAAACCGTGGTATTGTCAAAA 59.963 41.667 0.00 0.00 0.00 2.44
2826 3155 3.566322 CCAGAAACCGTGGTATTGTCAAA 59.434 43.478 0.00 0.00 0.00 2.69
2827 3156 3.142951 CCAGAAACCGTGGTATTGTCAA 58.857 45.455 0.00 0.00 0.00 3.18
2828 3157 2.369203 TCCAGAAACCGTGGTATTGTCA 59.631 45.455 0.00 0.00 36.37 3.58
2829 3158 3.048337 TCCAGAAACCGTGGTATTGTC 57.952 47.619 0.00 0.00 36.37 3.18
2830 3159 3.495434 TTCCAGAAACCGTGGTATTGT 57.505 42.857 0.00 0.00 36.37 2.71
2831 3160 4.839668 TTTTCCAGAAACCGTGGTATTG 57.160 40.909 0.00 0.00 36.37 1.90
2855 3184 9.439500 CATCCAAGTATTCAAAATCATGGTTTT 57.561 29.630 10.97 10.97 0.00 2.43
2856 3185 7.550196 GCATCCAAGTATTCAAAATCATGGTTT 59.450 33.333 0.00 0.00 0.00 3.27
2857 3186 7.043565 GCATCCAAGTATTCAAAATCATGGTT 58.956 34.615 0.00 0.00 0.00 3.67
2858 3187 6.576185 GCATCCAAGTATTCAAAATCATGGT 58.424 36.000 0.00 0.00 0.00 3.55
2859 3188 5.688621 CGCATCCAAGTATTCAAAATCATGG 59.311 40.000 0.00 0.00 0.00 3.66
2860 3189 6.267817 ACGCATCCAAGTATTCAAAATCATG 58.732 36.000 0.00 0.00 0.00 3.07
2861 3190 6.455360 ACGCATCCAAGTATTCAAAATCAT 57.545 33.333 0.00 0.00 0.00 2.45
2862 3191 5.895636 ACGCATCCAAGTATTCAAAATCA 57.104 34.783 0.00 0.00 0.00 2.57
2863 3192 6.034898 CCAAACGCATCCAAGTATTCAAAATC 59.965 38.462 0.00 0.00 0.00 2.17
2864 3193 5.868801 CCAAACGCATCCAAGTATTCAAAAT 59.131 36.000 0.00 0.00 0.00 1.82
2865 3194 5.226396 CCAAACGCATCCAAGTATTCAAAA 58.774 37.500 0.00 0.00 0.00 2.44
2866 3195 4.804108 CCAAACGCATCCAAGTATTCAAA 58.196 39.130 0.00 0.00 0.00 2.69
2867 3196 3.366883 GCCAAACGCATCCAAGTATTCAA 60.367 43.478 0.00 0.00 37.47 2.69
2868 3197 2.163412 GCCAAACGCATCCAAGTATTCA 59.837 45.455 0.00 0.00 37.47 2.57
2869 3198 2.423538 AGCCAAACGCATCCAAGTATTC 59.576 45.455 0.00 0.00 41.38 1.75
2870 3199 2.446435 AGCCAAACGCATCCAAGTATT 58.554 42.857 0.00 0.00 41.38 1.89
2871 3200 2.128771 AGCCAAACGCATCCAAGTAT 57.871 45.000 0.00 0.00 41.38 2.12
2872 3201 1.810151 GAAGCCAAACGCATCCAAGTA 59.190 47.619 0.00 0.00 41.38 2.24
2873 3202 0.598065 GAAGCCAAACGCATCCAAGT 59.402 50.000 0.00 0.00 41.38 3.16
2874 3203 0.597568 TGAAGCCAAACGCATCCAAG 59.402 50.000 0.00 0.00 41.38 3.61
2875 3204 0.597568 CTGAAGCCAAACGCATCCAA 59.402 50.000 0.00 0.00 41.38 3.53
2876 3205 1.865788 GCTGAAGCCAAACGCATCCA 61.866 55.000 0.00 0.00 41.38 3.41
2877 3206 1.153958 GCTGAAGCCAAACGCATCC 60.154 57.895 0.00 0.00 41.38 3.51
2878 3207 0.039256 TTGCTGAAGCCAAACGCATC 60.039 50.000 0.00 0.00 41.38 3.91
2879 3208 0.388659 TTTGCTGAAGCCAAACGCAT 59.611 45.000 0.00 0.00 41.38 4.73
2880 3209 0.174389 TTTTGCTGAAGCCAAACGCA 59.826 45.000 0.00 0.00 41.38 5.24
2881 3210 1.005032 GTTTTTGCTGAAGCCAAACGC 60.005 47.619 9.98 1.26 41.18 4.84
2882 3211 2.539476 AGTTTTTGCTGAAGCCAAACG 58.461 42.857 15.90 0.00 42.90 3.60
2883 3212 5.523552 ACATTAGTTTTTGCTGAAGCCAAAC 59.476 36.000 14.82 14.82 40.59 2.93
2884 3213 5.669477 ACATTAGTTTTTGCTGAAGCCAAA 58.331 33.333 0.00 0.00 41.18 3.28
2885 3214 5.275067 ACATTAGTTTTTGCTGAAGCCAA 57.725 34.783 0.00 0.00 41.18 4.52
2886 3215 4.935352 ACATTAGTTTTTGCTGAAGCCA 57.065 36.364 0.00 0.00 41.18 4.75
2908 3237 9.984190 GGTTTTTAGGATAATGTGGTTTACAAA 57.016 29.630 0.00 0.00 43.77 2.83
2909 3238 9.144298 TGGTTTTTAGGATAATGTGGTTTACAA 57.856 29.630 0.00 0.00 43.77 2.41
2910 3239 8.578151 GTGGTTTTTAGGATAATGTGGTTTACA 58.422 33.333 0.00 0.00 44.87 2.41
2911 3240 7.751793 CGTGGTTTTTAGGATAATGTGGTTTAC 59.248 37.037 0.00 0.00 0.00 2.01
2912 3241 7.447853 ACGTGGTTTTTAGGATAATGTGGTTTA 59.552 33.333 0.00 0.00 0.00 2.01
2913 3242 6.265876 ACGTGGTTTTTAGGATAATGTGGTTT 59.734 34.615 0.00 0.00 0.00 3.27
2914 3243 5.771165 ACGTGGTTTTTAGGATAATGTGGTT 59.229 36.000 0.00 0.00 0.00 3.67
2915 3244 5.318630 ACGTGGTTTTTAGGATAATGTGGT 58.681 37.500 0.00 0.00 0.00 4.16
2916 3245 5.890424 ACGTGGTTTTTAGGATAATGTGG 57.110 39.130 0.00 0.00 0.00 4.17
2941 3270 6.610830 ACCTCTTTTCCAGATACTCCAAAAA 58.389 36.000 0.00 0.00 0.00 1.94
2942 3271 6.200878 ACCTCTTTTCCAGATACTCCAAAA 57.799 37.500 0.00 0.00 0.00 2.44
2943 3272 5.568825 CGACCTCTTTTCCAGATACTCCAAA 60.569 44.000 0.00 0.00 0.00 3.28
2944 3273 4.081642 CGACCTCTTTTCCAGATACTCCAA 60.082 45.833 0.00 0.00 0.00 3.53
2945 3274 3.447586 CGACCTCTTTTCCAGATACTCCA 59.552 47.826 0.00 0.00 0.00 3.86
2946 3275 3.181474 CCGACCTCTTTTCCAGATACTCC 60.181 52.174 0.00 0.00 0.00 3.85
2947 3276 3.181474 CCCGACCTCTTTTCCAGATACTC 60.181 52.174 0.00 0.00 0.00 2.59
2948 3277 2.766828 CCCGACCTCTTTTCCAGATACT 59.233 50.000 0.00 0.00 0.00 2.12
2949 3278 2.764572 TCCCGACCTCTTTTCCAGATAC 59.235 50.000 0.00 0.00 0.00 2.24
2950 3279 2.764572 GTCCCGACCTCTTTTCCAGATA 59.235 50.000 0.00 0.00 0.00 1.98
2951 3280 1.555533 GTCCCGACCTCTTTTCCAGAT 59.444 52.381 0.00 0.00 0.00 2.90
2952 3281 0.974383 GTCCCGACCTCTTTTCCAGA 59.026 55.000 0.00 0.00 0.00 3.86
2953 3282 3.534721 GTCCCGACCTCTTTTCCAG 57.465 57.895 0.00 0.00 0.00 3.86
2968 3297 4.299796 TTTGGCCCCAGCAGGTCC 62.300 66.667 0.00 0.00 42.56 4.46
2969 3298 2.677875 CTTTGGCCCCAGCAGGTC 60.678 66.667 0.00 0.00 42.56 3.85
2970 3299 4.305956 CCTTTGGCCCCAGCAGGT 62.306 66.667 0.00 0.00 42.56 4.00
3031 3360 4.671590 TCGGTGAGGGGCTCGTCA 62.672 66.667 4.49 4.49 35.68 4.35
3113 3442 1.766461 CCTAAGGTCCGGCCATCCT 60.766 63.158 15.92 3.78 40.61 3.24
3150 3479 6.392354 TGGTTAACTAACACGATCCACTAAG 58.608 40.000 5.42 0.00 37.92 2.18
3161 3490 8.828688 AGACTAAGACAATGGTTAACTAACAC 57.171 34.615 5.42 0.00 37.92 3.32
3228 3557 6.767902 ACTATGCCTATTACAGTTGACATTGG 59.232 38.462 0.00 0.00 0.00 3.16
3268 3597 0.251916 TACGCCCCAAGATGTTCTGG 59.748 55.000 0.00 0.00 0.00 3.86
3292 3621 1.604308 CATGGGCACAGCAGAACCA 60.604 57.895 0.00 0.00 35.39 3.67
3301 3631 4.662023 CATGCTACCATGGGCACA 57.338 55.556 18.09 10.99 44.07 4.57
3317 3647 4.038763 ACAGAACGAAGAAGTACACATCCA 59.961 41.667 0.00 0.00 0.00 3.41
3338 3668 8.939929 CAAGCATGAAATTCTACTAAGAAGACA 58.060 33.333 0.00 0.00 44.79 3.41
3378 3708 0.250234 GTGCTACTCATCTGGCCACA 59.750 55.000 0.00 0.00 0.00 4.17
3386 3716 5.238583 ACTAAGTTTGGTGTGCTACTCATC 58.761 41.667 0.00 0.00 0.00 2.92
3405 3735 4.929211 CACGTTCCAGTTCATCATGACTAA 59.071 41.667 0.00 0.00 0.00 2.24
3461 3791 2.308769 GCTCGCGATCTGGCAGATG 61.309 63.158 33.30 23.91 34.53 2.90
3468 3798 3.260483 GTGGCTGCTCGCGATCTG 61.260 66.667 10.36 11.28 40.44 2.90
3476 3806 0.181114 TGGATACATGGTGGCTGCTC 59.819 55.000 0.00 0.00 46.17 4.26
3478 3808 4.984194 TGGATACATGGTGGCTGC 57.016 55.556 0.00 0.00 46.17 5.25
3495 3825 0.964358 GTTTCCTGCAGGCAGAGCAT 60.964 55.000 28.91 0.00 46.30 3.79
3533 3863 2.433491 CCACGAACGATGGCCGAA 60.433 61.111 0.00 0.00 41.76 4.30
3534 3864 4.444838 CCCACGAACGATGGCCGA 62.445 66.667 0.00 0.00 41.76 5.54
3542 3872 0.602562 TACCACCTAACCCACGAACG 59.397 55.000 0.00 0.00 0.00 3.95
3548 3878 1.991167 CCGGCTACCACCTAACCCA 60.991 63.158 0.00 0.00 0.00 4.51
3550 3880 2.188731 GCCGGCTACCACCTAACC 59.811 66.667 22.15 0.00 0.00 2.85
3580 3910 4.856801 CAATGGCGGGGAGGACGG 62.857 72.222 0.00 0.00 0.00 4.79
3632 3962 1.141019 GCGGATGTCCAGAGCGTTA 59.859 57.895 0.00 0.00 35.14 3.18
3635 3965 2.887568 GTGCGGATGTCCAGAGCG 60.888 66.667 0.00 0.00 35.14 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.