Multiple sequence alignment - TraesCS2D01G461500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G461500 chr2D 100.000 4346 0 0 2289 6634 568081817 568077472 0.000000e+00 8026.0
1 TraesCS2D01G461500 chr2D 100.000 1977 0 0 1 1977 568084105 568082129 0.000000e+00 3651.0
2 TraesCS2D01G461500 chr2D 89.907 1288 95 20 3302 4569 567980465 567979193 0.000000e+00 1626.0
3 TraesCS2D01G461500 chr2D 87.799 1295 116 30 4662 5933 567979198 567977923 0.000000e+00 1478.0
4 TraesCS2D01G461500 chr2D 83.978 181 23 5 5946 6124 567968034 567967858 1.140000e-37 169.0
5 TraesCS2D01G461500 chr2D 84.337 166 20 4 6145 6307 567967801 567967639 2.480000e-34 158.0
6 TraesCS2D01G461500 chr2D 83.133 166 21 4 6474 6632 567787360 567787195 1.930000e-30 145.0
7 TraesCS2D01G461500 chr2D 86.047 129 14 3 4139 4263 567633837 567633709 1.160000e-27 135.0
8 TraesCS2D01G461500 chr2D 82.036 167 23 5 6469 6632 567967503 567967341 1.160000e-27 135.0
9 TraesCS2D01G461500 chr2D 83.898 118 17 2 3005 3121 567049589 567049473 1.960000e-20 111.0
10 TraesCS2D01G461500 chr2D 82.707 133 14 6 4139 4263 567594278 567594147 7.030000e-20 110.0
11 TraesCS2D01G461500 chr2D 87.778 90 8 2 6458 6544 567051673 567051584 1.180000e-17 102.0
12 TraesCS2D01G461500 chr2A 93.816 3687 137 46 2310 5945 707302178 707298532 0.000000e+00 5461.0
13 TraesCS2D01G461500 chr2A 91.028 1371 84 19 608 1957 707303528 707302176 0.000000e+00 1814.0
14 TraesCS2D01G461500 chr2A 88.832 394 39 4 219 611 707312328 707311939 4.650000e-131 479.0
15 TraesCS2D01G461500 chr2A 79.389 393 44 24 5946 6307 707270123 707269737 6.650000e-60 243.0
16 TraesCS2D01G461500 chr2A 81.250 240 24 13 6404 6632 707235127 707234898 2.460000e-39 174.0
17 TraesCS2D01G461500 chr2A 78.970 233 31 10 6404 6632 707269657 707269439 6.930000e-30 143.0
18 TraesCS2D01G461500 chr2B 94.500 3091 96 38 2289 5327 680577210 680574142 0.000000e+00 4698.0
19 TraesCS2D01G461500 chr2B 89.377 1845 147 25 3306 5120 680538501 680536676 0.000000e+00 2276.0
20 TraesCS2D01G461500 chr2B 89.891 1286 77 31 717 1977 680578509 680577252 0.000000e+00 1605.0
21 TraesCS2D01G461500 chr2B 90.420 762 43 11 5370 6120 680574005 680573263 0.000000e+00 976.0
22 TraesCS2D01G461500 chr2B 89.674 736 62 10 1 725 680580674 680579942 0.000000e+00 926.0
23 TraesCS2D01G461500 chr2B 85.625 480 31 20 6185 6634 680572873 680572402 2.800000e-128 470.0
24 TraesCS2D01G461500 chr2B 79.702 537 54 29 5161 5678 680536679 680536179 2.960000e-88 337.0
25 TraesCS2D01G461500 chr2B 79.649 285 28 19 5946 6203 680522621 680522340 1.900000e-40 178.0
26 TraesCS2D01G461500 chr2B 78.862 246 25 14 6404 6632 680522173 680521938 2.490000e-29 141.0
27 TraesCS2D01G461500 chr2B 93.976 83 1 1 6106 6188 680573215 680573137 9.030000e-24 122.0
28 TraesCS2D01G461500 chr2B 86.170 94 11 1 4139 4230 680408409 680408316 4.230000e-17 100.0
29 TraesCS2D01G461500 chr2B 76.630 184 25 11 2951 3118 680060363 680060182 1.190000e-12 86.1
30 TraesCS2D01G461500 chr4A 84.615 390 30 13 3436 3807 629938420 629938797 1.760000e-95 361.0
31 TraesCS2D01G461500 chr4A 84.270 178 8 5 3197 3357 629938230 629938404 8.910000e-34 156.0
32 TraesCS2D01G461500 chr6B 86.449 214 27 2 4577 4789 255967573 255967361 4.000000e-57 233.0
33 TraesCS2D01G461500 chr7A 87.838 148 18 0 4754 4901 30005073 30004926 2.460000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G461500 chr2D 568077472 568084105 6633 True 5838.500000 8026 100.0000 1 6634 2 chr2D.!!$R7 6633
1 TraesCS2D01G461500 chr2D 567977923 567980465 2542 True 1552.000000 1626 88.8530 3302 5933 2 chr2D.!!$R6 2631
2 TraesCS2D01G461500 chr2A 707298532 707303528 4996 True 3637.500000 5461 92.4220 608 5945 2 chr2A.!!$R4 5337
3 TraesCS2D01G461500 chr2B 680572402 680580674 8272 True 1466.166667 4698 90.6810 1 6634 6 chr2B.!!$R5 6633
4 TraesCS2D01G461500 chr2B 680536179 680538501 2322 True 1306.500000 2276 84.5395 3306 5678 2 chr2B.!!$R4 2372
5 TraesCS2D01G461500 chr4A 629938230 629938797 567 False 258.500000 361 84.4425 3197 3807 2 chr4A.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 2269 1.040646 TCTTCCAGCTGTTCGACACT 58.959 50.000 13.81 0.00 0.00 3.55 F
1618 3105 0.249031 GCCATTGAAATACCAGCGGC 60.249 55.000 0.00 0.00 0.00 6.53 F
1860 3350 1.374947 TCTTGCGGGGAACAAGAGG 59.625 57.895 2.21 0.00 46.46 3.69 F
3499 5018 1.922570 ATTGGAGTAAGCTACACGCG 58.077 50.000 3.53 3.53 45.59 6.01 F
4789 6348 0.695347 AGGGTTCAAGGCTTCCTGAG 59.305 55.000 4.53 0.00 32.13 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 3178 0.039472 ATGCCCAACATGCTACACCA 59.961 50.000 0.0 0.0 37.70 4.17 R
2820 4317 2.168313 TGACAGCACAACAGAGAACAGA 59.832 45.455 0.0 0.0 0.00 3.41 R
3665 5201 0.550914 AGCCCTTGCCGATTTCCATA 59.449 50.000 0.0 0.0 38.69 2.74 R
5034 6596 1.463214 TTCAGTTCCCAGGCCTCCA 60.463 57.895 0.0 0.0 0.00 3.86 R
6334 8351 0.104120 CGGGACAGCATCATCGGTTA 59.896 55.000 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 2.557924 CCAAGACATGGCTGCAACTTTA 59.442 45.455 0.00 0.00 43.80 1.85
125 126 8.342634 GCGACCAAAGCTTAAAATCATAGATAA 58.657 33.333 0.00 0.00 0.00 1.75
197 198 7.360861 CCACGCATAGTTGAAACATCTCTAAAA 60.361 37.037 0.00 0.00 0.00 1.52
230 232 7.544217 GTGGTATTTTGAAACAGACACAAAACT 59.456 33.333 0.00 0.00 43.07 2.66
231 233 7.757624 TGGTATTTTGAAACAGACACAAAACTC 59.242 33.333 0.00 0.00 43.07 3.01
239 241 3.617263 ACAGACACAAAACTCAACGAGAC 59.383 43.478 0.00 0.00 33.32 3.36
302 307 5.163982 GGCGAAACAATTGTGTAGTAGAGTC 60.164 44.000 12.82 0.00 36.80 3.36
320 325 9.182214 AGTAGAGTCATATTTAAACTACCACGA 57.818 33.333 0.00 0.00 32.14 4.35
324 329 7.956558 AGTCATATTTAAACTACCACGAAACG 58.043 34.615 0.00 0.00 0.00 3.60
350 355 7.638295 GTGTGCAAAATAAAAGTGTTTTTAGGC 59.362 33.333 0.00 0.00 40.88 3.93
435 440 7.822334 AGAAAATGATACTACATGTTCGGAACA 59.178 33.333 24.32 24.32 44.52 3.18
438 443 6.032956 TGATACTACATGTTCGGAACAAGT 57.967 37.500 27.94 27.94 45.86 3.16
450 455 2.152016 GGAACAAGTGTGGAGGTAAGC 58.848 52.381 0.00 0.00 0.00 3.09
451 456 2.486548 GGAACAAGTGTGGAGGTAAGCA 60.487 50.000 0.00 0.00 0.00 3.91
461 466 4.214545 TGTGGAGGTAAGCAAAACATAACG 59.785 41.667 0.00 0.00 0.00 3.18
494 501 8.766493 TTTCATAGATGTTTCGCATTATTTCG 57.234 30.769 0.00 0.00 38.06 3.46
495 502 7.477144 TCATAGATGTTTCGCATTATTTCGT 57.523 32.000 0.00 0.00 38.06 3.85
508 515 9.562583 TCGCATTATTTCGTAGCTTAAAATTTT 57.437 25.926 8.75 8.75 0.00 1.82
509 516 9.605305 CGCATTATTTCGTAGCTTAAAATTTTG 57.395 29.630 13.76 0.00 0.00 2.44
516 523 9.906660 TTTCGTAGCTTAAAATTTTGATCATGT 57.093 25.926 13.76 0.00 0.00 3.21
517 524 9.906660 TTCGTAGCTTAAAATTTTGATCATGTT 57.093 25.926 13.76 0.00 0.00 2.71
585 592 3.057174 GGCCAACCAAACATCGTCATAAA 60.057 43.478 0.00 0.00 35.26 1.40
596 603 8.977505 CAAACATCGTCATAAATCCAACTTTTT 58.022 29.630 0.00 0.00 0.00 1.94
597 604 8.519492 AACATCGTCATAAATCCAACTTTTTG 57.481 30.769 0.00 0.00 0.00 2.44
654 666 2.302260 TGCGAACCAAATCCAACTTCA 58.698 42.857 0.00 0.00 0.00 3.02
680 692 2.045340 CTGGGCCGTTGGTTAGGG 60.045 66.667 0.00 0.00 34.81 3.53
687 699 2.598787 CGTTGGTTAGGGCCCTGGA 61.599 63.158 35.81 20.16 0.00 3.86
705 717 1.895131 GGATTGTTGGGCTGTGACAAT 59.105 47.619 1.00 1.00 44.25 2.71
779 2233 2.365068 CGGTCACACTGCTTCGACG 61.365 63.158 0.00 0.00 0.00 5.12
787 2241 1.995484 CACTGCTTCGACGTCATTGAT 59.005 47.619 17.16 0.00 0.00 2.57
815 2269 1.040646 TCTTCCAGCTGTTCGACACT 58.959 50.000 13.81 0.00 0.00 3.55
1128 2602 1.147153 CCCCTTGCTCCTTCCGATC 59.853 63.158 0.00 0.00 0.00 3.69
1132 2606 3.385749 TTGCTCCTTCCGATCCGCC 62.386 63.158 0.00 0.00 0.00 6.13
1223 2697 6.426937 CAGTAGAGTTTTTCTTTCCCGATCAA 59.573 38.462 0.00 0.00 37.36 2.57
1228 2702 5.416013 AGTTTTTCTTTCCCGATCAAGGATC 59.584 40.000 2.42 0.00 35.88 3.36
1321 2801 2.287248 GCGCTGATTTTAGGATCTTGGC 60.287 50.000 0.00 0.00 0.00 4.52
1348 2833 3.140325 CAAGTGGTTGGTGGATGTAGT 57.860 47.619 0.00 0.00 0.00 2.73
1369 2854 5.535990 AGTAGGTAAGCTTTGGGGTAGTAT 58.464 41.667 3.20 0.00 0.00 2.12
1379 2864 6.558775 AGCTTTGGGGTAGTATGATTCAGATA 59.441 38.462 0.00 0.00 0.00 1.98
1383 2868 7.303182 TGGGGTAGTATGATTCAGATAACTG 57.697 40.000 0.00 0.00 44.66 3.16
1416 2901 2.794286 AGGGGATTTCCTAGCCATTCT 58.206 47.619 0.00 0.00 34.92 2.40
1518 3003 3.260740 CCTGTTCTTTGTTTTGCTGCAA 58.739 40.909 11.69 11.69 0.00 4.08
1553 3038 1.153449 CCTGCGCGTCATAGGGAAA 60.153 57.895 8.43 0.00 0.00 3.13
1588 3075 4.279420 TCTGTCTCCCTGATCATATGTTCG 59.721 45.833 1.90 1.43 0.00 3.95
1593 3080 6.151985 GTCTCCCTGATCATATGTTCGTATCT 59.848 42.308 1.90 0.00 0.00 1.98
1594 3081 6.151817 TCTCCCTGATCATATGTTCGTATCTG 59.848 42.308 1.90 2.51 0.00 2.90
1609 3096 7.498900 TGTTCGTATCTGATTAGCCATTGAAAT 59.501 33.333 0.00 0.00 0.00 2.17
1618 3105 0.249031 GCCATTGAAATACCAGCGGC 60.249 55.000 0.00 0.00 0.00 6.53
1674 3163 4.141937 TGTCAGTCTGTTGCTTCTTACTGT 60.142 41.667 0.00 0.00 36.56 3.55
1686 3175 5.048782 TGCTTCTTACTGTGGTTATGCTTTG 60.049 40.000 0.00 0.00 0.00 2.77
1689 3178 5.865085 TCTTACTGTGGTTATGCTTTGAGT 58.135 37.500 0.00 0.00 0.00 3.41
1698 3187 2.566833 ATGCTTTGAGTGGTGTAGCA 57.433 45.000 0.00 0.00 44.91 3.49
1766 3256 5.335127 CAAATCCACTGCACTAACTAATGC 58.665 41.667 0.00 0.00 42.40 3.56
1812 3302 4.202223 GGGCTATTCTCCACTTCGATTGTA 60.202 45.833 0.00 0.00 0.00 2.41
1817 3307 7.148722 GCTATTCTCCACTTCGATTGTAATAGC 60.149 40.741 18.08 18.08 40.85 2.97
1860 3350 1.374947 TCTTGCGGGGAACAAGAGG 59.625 57.895 2.21 0.00 46.46 3.69
1876 3366 2.928334 AGAGGACATTGCCTTGCATAG 58.072 47.619 0.00 0.00 38.76 2.23
1931 3425 7.974501 TCAAACGCTCACCAGTTTATTTAAAAA 59.025 29.630 0.00 0.00 38.37 1.94
2392 3888 4.873259 ACATTGCCACCTGTTTGTTTTAAC 59.127 37.500 0.00 0.00 0.00 2.01
2393 3889 4.810191 TTGCCACCTGTTTGTTTTAACT 57.190 36.364 0.00 0.00 0.00 2.24
2394 3890 4.810191 TGCCACCTGTTTGTTTTAACTT 57.190 36.364 0.00 0.00 0.00 2.66
2395 3891 5.153950 TGCCACCTGTTTGTTTTAACTTT 57.846 34.783 0.00 0.00 0.00 2.66
2396 3892 5.552178 TGCCACCTGTTTGTTTTAACTTTT 58.448 33.333 0.00 0.00 0.00 2.27
2397 3893 6.698380 TGCCACCTGTTTGTTTTAACTTTTA 58.302 32.000 0.00 0.00 0.00 1.52
2398 3894 7.159372 TGCCACCTGTTTGTTTTAACTTTTAA 58.841 30.769 0.00 0.00 0.00 1.52
2423 3919 3.431912 CGTGAGTGTTTGCTAAGTATGCA 59.568 43.478 0.00 0.00 38.80 3.96
2430 3926 7.308435 AGTGTTTGCTAAGTATGCAGATTTTC 58.692 34.615 0.00 0.00 41.71 2.29
2562 4058 2.378038 TGCAGAACCAAACTGAGCTTT 58.622 42.857 0.00 0.00 37.54 3.51
2946 4443 4.579869 CTTTAGCAAAGGAGCTTGGACTA 58.420 43.478 0.00 0.00 43.70 2.59
3268 4782 8.484641 TGAGAAGTAAGATTGCACAGAATTAG 57.515 34.615 0.00 0.00 0.00 1.73
3398 4917 7.308589 GCAAGCACATTTTAGAAAAGGAGTCTA 60.309 37.037 6.41 0.00 34.14 2.59
3499 5018 1.922570 ATTGGAGTAAGCTACACGCG 58.077 50.000 3.53 3.53 45.59 6.01
3632 5168 8.940768 TTTGCTTTAACTAAGAATGCTGTTTT 57.059 26.923 0.00 0.00 35.80 2.43
3665 5201 2.947127 AAAGAAGCAGGCAGAGACTT 57.053 45.000 0.00 0.00 0.00 3.01
3754 5291 6.984474 CCACGAGCTTTTACATCCTTATTCTA 59.016 38.462 0.00 0.00 0.00 2.10
3883 5421 2.298729 GCCTGCCTATTTGTTTTGGTCA 59.701 45.455 0.00 0.00 0.00 4.02
4046 5584 3.744238 TGGATTCTTCAGTTCACACGA 57.256 42.857 0.00 0.00 0.00 4.35
4296 5844 8.758829 AGAAATTTGTACTTTCCAAGGTTTCTT 58.241 29.630 0.00 0.00 36.39 2.52
4534 6092 7.781548 TCTGTTTTGTTCAGTTAAGAGGTAC 57.218 36.000 0.00 0.00 34.86 3.34
4789 6348 0.695347 AGGGTTCAAGGCTTCCTGAG 59.305 55.000 4.53 0.00 32.13 3.35
4978 6540 4.018490 TGATGGTGCATGTGCTTAGAATT 58.982 39.130 6.55 0.00 42.66 2.17
4981 6543 3.573538 TGGTGCATGTGCTTAGAATTGTT 59.426 39.130 6.55 0.00 42.66 2.83
5055 6618 0.035915 GAGGCCTGGGAACTGAACTC 60.036 60.000 12.00 0.00 0.00 3.01
5062 6625 2.604912 GGGAACTGAACTCCCCAATT 57.395 50.000 0.00 0.00 46.18 2.32
5085 6648 4.286032 TCATAGGTGCCTAGTTTGTTGTCT 59.714 41.667 4.17 0.00 31.45 3.41
5170 6737 0.843984 ACAAGGGGATATGAACGGGG 59.156 55.000 0.00 0.00 0.00 5.73
5211 6779 4.082245 CCTTGTGCCTGGATTCGTTTATTT 60.082 41.667 0.00 0.00 0.00 1.40
5337 6924 2.051804 AAGCGCCGACATGCTATTGC 62.052 55.000 2.29 0.00 41.46 3.56
5418 7083 1.959042 CCAGTCTTGTGTGCTTCAGT 58.041 50.000 0.00 0.00 0.00 3.41
5426 7091 4.039124 TCTTGTGTGCTTCAGTAGTGATCA 59.961 41.667 0.00 0.00 30.85 2.92
5434 7099 5.163509 TGCTTCAGTAGTGATCACAGGATAC 60.164 44.000 27.02 19.05 32.67 2.24
5435 7100 5.163509 GCTTCAGTAGTGATCACAGGATACA 60.164 44.000 27.02 4.16 32.67 2.29
5503 7171 0.550914 TTGTGCCTGGGTCTTCACTT 59.449 50.000 0.00 0.00 0.00 3.16
5506 7174 1.303643 GCCTGGGTCTTCACTTGGG 60.304 63.158 0.00 0.00 0.00 4.12
5517 7185 0.396435 TCACTTGGGCTGACGTGATT 59.604 50.000 0.00 0.00 32.00 2.57
5644 7316 2.308866 ACCTAACCTGATCCCAAACTGG 59.691 50.000 0.00 0.00 37.25 4.00
5726 7407 6.478673 GGAAAGGTTGTAAAAACACATTCTGG 59.521 38.462 0.00 0.00 0.00 3.86
5740 7421 5.295292 ACACATTCTGGAATCGCATAGAAAG 59.705 40.000 0.00 0.00 33.39 2.62
5750 7431 4.202245 TCGCATAGAAAGTTGTAGGCTT 57.798 40.909 0.00 0.00 32.44 4.35
5830 7511 2.292257 ACCCTACATCTGTACTGCTGGA 60.292 50.000 8.24 0.00 0.00 3.86
5862 7543 6.559810 TGTTGCGATATTCTTATTGGTTTGG 58.440 36.000 0.00 0.00 0.00 3.28
5872 7553 8.664669 ATTCTTATTGGTTTGGTTACCTTGAT 57.335 30.769 2.07 0.00 39.04 2.57
5945 7626 5.752955 ACGAATTCCACAACTTTTGATTTGG 59.247 36.000 0.00 0.00 0.00 3.28
5960 7641 6.653526 TTGATTTGGTGATCAGTGTTGATT 57.346 33.333 0.00 0.00 44.01 2.57
5961 7642 7.757941 TTGATTTGGTGATCAGTGTTGATTA 57.242 32.000 0.00 0.00 44.01 1.75
5962 7643 7.757941 TGATTTGGTGATCAGTGTTGATTAA 57.242 32.000 0.00 0.00 44.01 1.40
5963 7644 7.819644 TGATTTGGTGATCAGTGTTGATTAAG 58.180 34.615 0.00 0.00 44.01 1.85
5964 7645 5.627499 TTGGTGATCAGTGTTGATTAAGC 57.373 39.130 0.00 0.00 44.01 3.09
5965 7646 4.650734 TGGTGATCAGTGTTGATTAAGCA 58.349 39.130 0.00 0.00 44.01 3.91
5966 7647 4.696877 TGGTGATCAGTGTTGATTAAGCAG 59.303 41.667 0.00 0.00 44.01 4.24
5967 7648 4.697352 GGTGATCAGTGTTGATTAAGCAGT 59.303 41.667 0.00 0.00 44.01 4.40
5968 7649 5.874810 GGTGATCAGTGTTGATTAAGCAGTA 59.125 40.000 0.00 0.00 44.01 2.74
5969 7650 6.036517 GGTGATCAGTGTTGATTAAGCAGTAG 59.963 42.308 0.00 0.00 44.01 2.57
5970 7651 6.036517 GTGATCAGTGTTGATTAAGCAGTAGG 59.963 42.308 0.00 0.00 44.01 3.18
5971 7652 5.483685 TCAGTGTTGATTAAGCAGTAGGT 57.516 39.130 0.00 0.00 0.00 3.08
5972 7653 5.479306 TCAGTGTTGATTAAGCAGTAGGTC 58.521 41.667 0.00 0.00 0.00 3.85
5973 7654 4.327357 CAGTGTTGATTAAGCAGTAGGTCG 59.673 45.833 0.00 0.00 0.00 4.79
5974 7655 4.219944 AGTGTTGATTAAGCAGTAGGTCGA 59.780 41.667 0.00 0.00 0.00 4.20
5975 7656 5.105310 AGTGTTGATTAAGCAGTAGGTCGAT 60.105 40.000 0.00 0.00 0.00 3.59
5976 7657 5.581085 GTGTTGATTAAGCAGTAGGTCGATT 59.419 40.000 0.00 0.00 0.00 3.34
6017 7705 2.029838 ATCCAAGAAGGCGATCACAC 57.970 50.000 0.00 0.00 37.29 3.82
6018 7706 0.036388 TCCAAGAAGGCGATCACACC 60.036 55.000 0.00 0.00 37.29 4.16
6038 7726 8.798402 TCACACCGACAAATCCTTTATTTATTT 58.202 29.630 0.00 0.00 35.54 1.40
6071 7759 3.012518 GCATGTAGCACATCAAGGAAGT 58.987 45.455 0.00 0.00 44.79 3.01
6074 7762 2.299013 TGTAGCACATCAAGGAAGTCGT 59.701 45.455 0.00 0.00 0.00 4.34
6095 7783 6.094603 GTCGTGAAGTAGGGAAGACATACTTA 59.905 42.308 4.65 0.00 39.28 2.24
6133 7883 8.308931 AGGAAATACACACGACAAAGATAGTAA 58.691 33.333 0.00 0.00 0.00 2.24
6134 7884 8.592998 GGAAATACACACGACAAAGATAGTAAG 58.407 37.037 0.00 0.00 0.00 2.34
6139 7889 7.655490 ACACACGACAAAGATAGTAAGTAGTT 58.345 34.615 0.00 0.00 0.00 2.24
6140 7890 7.594015 ACACACGACAAAGATAGTAAGTAGTTG 59.406 37.037 0.00 0.00 0.00 3.16
6141 7891 7.061905 CACACGACAAAGATAGTAAGTAGTTGG 59.938 40.741 0.00 0.00 0.00 3.77
6142 7892 6.034683 CACGACAAAGATAGTAAGTAGTTGGC 59.965 42.308 0.00 0.00 0.00 4.52
6234 8251 4.212214 CCACAACTAGTTGAGCTTCAGTTC 59.788 45.833 36.14 0.00 42.93 3.01
6283 8300 2.715046 TGATCATGGAGACTTGTTGGC 58.285 47.619 0.00 0.00 36.87 4.52
6293 8310 0.314935 ACTTGTTGGCGCTGGATTTG 59.685 50.000 7.64 0.00 0.00 2.32
6303 8320 1.582610 GCTGGATTTGCGAACGGGAA 61.583 55.000 0.00 0.00 0.00 3.97
6306 8323 1.654023 GGATTTGCGAACGGGAAGGG 61.654 60.000 0.00 0.00 0.00 3.95
6307 8324 1.654023 GATTTGCGAACGGGAAGGGG 61.654 60.000 0.00 0.00 0.00 4.79
6308 8325 2.132089 ATTTGCGAACGGGAAGGGGA 62.132 55.000 0.00 0.00 0.00 4.81
6309 8326 2.741486 TTTGCGAACGGGAAGGGGAG 62.741 60.000 0.00 0.00 0.00 4.30
6310 8327 3.703127 GCGAACGGGAAGGGGAGT 61.703 66.667 0.00 0.00 0.00 3.85
6312 8329 2.280552 CGAACGGGAAGGGGAGTGA 61.281 63.158 0.00 0.00 0.00 3.41
6313 8330 1.295746 GAACGGGAAGGGGAGTGAC 59.704 63.158 0.00 0.00 0.00 3.67
6314 8331 2.181445 GAACGGGAAGGGGAGTGACC 62.181 65.000 0.00 0.00 38.08 4.02
6323 8340 2.930562 GGAGTGACCCCAGGCACT 60.931 66.667 0.06 0.06 40.65 4.40
6324 8341 2.665603 GAGTGACCCCAGGCACTC 59.334 66.667 12.96 12.96 43.53 3.51
6325 8342 2.930562 AGTGACCCCAGGCACTCC 60.931 66.667 0.00 0.00 36.07 3.85
6326 8343 4.035102 GTGACCCCAGGCACTCCC 62.035 72.222 0.00 0.00 34.60 4.30
6345 8362 3.532896 CCCCCGATAACCGATGATG 57.467 57.895 0.00 0.00 41.76 3.07
6346 8363 0.673644 CCCCCGATAACCGATGATGC 60.674 60.000 0.00 0.00 41.76 3.91
6347 8364 0.321671 CCCCGATAACCGATGATGCT 59.678 55.000 0.00 0.00 41.76 3.79
6348 8365 1.432514 CCCGATAACCGATGATGCTG 58.567 55.000 0.00 0.00 41.76 4.41
6349 8366 1.270305 CCCGATAACCGATGATGCTGT 60.270 52.381 0.00 0.00 41.76 4.40
6358 8375 1.009829 GATGATGCTGTCCCGACAAC 58.990 55.000 0.00 0.00 41.33 3.32
6369 8386 2.340809 CGACAACCGGTGGCAGTA 59.659 61.111 8.52 0.00 33.13 2.74
6371 8388 1.670083 GACAACCGGTGGCAGTACC 60.670 63.158 8.52 0.00 34.13 3.34
6372 8389 2.359478 CAACCGGTGGCAGTACCC 60.359 66.667 8.52 0.00 37.44 3.69
6373 8390 3.643554 AACCGGTGGCAGTACCCC 61.644 66.667 8.52 0.00 37.44 4.95
6382 8399 2.433664 CAGTACCCCCGCGACAAC 60.434 66.667 8.23 0.00 0.00 3.32
6383 8400 3.698820 AGTACCCCCGCGACAACC 61.699 66.667 8.23 0.00 0.00 3.77
6493 8555 4.803426 GGACGCGAGCAGGACCAG 62.803 72.222 15.93 0.00 0.00 4.00
6534 8596 2.089854 CGCTTCGCCATTGCTAACT 58.910 52.632 0.00 0.00 34.43 2.24
6557 8619 9.668497 AACTGGGAGTTCTTATAAAATCACTAC 57.332 33.333 0.00 0.00 31.77 2.73
6558 8620 8.265764 ACTGGGAGTTCTTATAAAATCACTACC 58.734 37.037 7.09 7.09 35.98 3.18
6574 8641 2.567615 ACTACCCAGGAGATGTTGTGTC 59.432 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.578336 GGTCGCTTACGTTTAAAGAACCTAT 59.422 40.000 0.00 0.00 41.18 2.57
98 99 5.880332 TCTATGATTTTAAGCTTTGGTCGCT 59.120 36.000 3.20 0.00 39.94 4.93
161 162 6.078202 TCAACTATGCGTGGAAATTGAAAA 57.922 33.333 0.00 0.00 0.00 2.29
174 175 9.559958 AAATTTTAGAGATGTTTCAACTATGCG 57.440 29.630 0.00 0.00 0.00 4.73
207 209 8.682128 TGAGTTTTGTGTCTGTTTCAAAATAC 57.318 30.769 0.00 0.00 41.07 1.89
230 232 3.792401 ACTTTCACACATGTCTCGTTGA 58.208 40.909 0.00 0.00 0.00 3.18
231 233 5.651172 TTACTTTCACACATGTCTCGTTG 57.349 39.130 0.00 0.00 0.00 4.10
269 274 1.933115 ATTGTTTCGCCATGTCCCGC 61.933 55.000 0.00 0.00 0.00 6.13
270 275 0.525761 AATTGTTTCGCCATGTCCCG 59.474 50.000 0.00 0.00 0.00 5.14
271 276 1.272212 ACAATTGTTTCGCCATGTCCC 59.728 47.619 4.92 0.00 0.00 4.46
272 277 2.288152 ACACAATTGTTTCGCCATGTCC 60.288 45.455 8.77 0.00 28.43 4.02
320 325 6.713792 AACACTTTTATTTTGCACACGTTT 57.286 29.167 0.00 0.00 0.00 3.60
324 329 7.638295 GCCTAAAAACACTTTTATTTTGCACAC 59.362 33.333 0.00 0.00 36.61 3.82
337 342 5.048013 GCCACTAATCTGCCTAAAAACACTT 60.048 40.000 0.00 0.00 0.00 3.16
350 355 5.840243 TTTTGGATGATGCCACTAATCTG 57.160 39.130 0.00 0.00 37.75 2.90
378 383 9.757227 CTTTTTAAATGTTAGACATGGGTTTCA 57.243 29.630 0.00 0.00 37.97 2.69
420 425 3.186409 CCACACTTGTTCCGAACATGTAG 59.814 47.826 24.57 20.81 44.82 2.74
430 435 2.152016 GCTTACCTCCACACTTGTTCC 58.848 52.381 0.00 0.00 0.00 3.62
435 440 3.626930 TGTTTTGCTTACCTCCACACTT 58.373 40.909 0.00 0.00 0.00 3.16
438 443 4.214545 CGTTATGTTTTGCTTACCTCCACA 59.785 41.667 0.00 0.00 0.00 4.17
461 466 8.226543 TGCGAAACATCTATGAAATTGTTTTC 57.773 30.769 0.00 0.00 41.10 2.29
483 490 9.605305 CAAAATTTTAAGCTACGAAATAATGCG 57.395 29.630 2.44 0.00 0.00 4.73
533 540 9.354673 ACAAAGAGACCTTCAAAATAAGATCAA 57.645 29.630 0.00 0.00 0.00 2.57
548 555 3.421844 GTTGGCCATTACAAAGAGACCT 58.578 45.455 6.09 0.00 0.00 3.85
585 592 7.797121 ATATCCCTCAAACAAAAAGTTGGAT 57.203 32.000 0.00 0.00 39.41 3.41
654 666 1.185315 CAACGGCCCAGAATTCCAAT 58.815 50.000 0.65 0.00 0.00 3.16
687 699 4.558496 CGTTTATTGTCACAGCCCAACAAT 60.558 41.667 5.42 5.42 43.83 2.71
770 2224 2.805671 ACAAATCAATGACGTCGAAGCA 59.194 40.909 11.62 0.00 0.00 3.91
797 2251 1.423395 GAGTGTCGAACAGCTGGAAG 58.577 55.000 19.93 8.44 0.00 3.46
826 2285 1.810030 GTCAGTTCATCCCGTCGCC 60.810 63.158 0.00 0.00 0.00 5.54
1065 2538 3.375430 GGAAGAGATAAAGGAGAGGGGGA 60.375 52.174 0.00 0.00 0.00 4.81
1191 2665 8.346300 GGGAAAGAAAAACTCTACTGAAGAAAG 58.654 37.037 0.00 0.00 32.46 2.62
1223 2697 1.669927 ATCCAGGACTCCCCGATCCT 61.670 60.000 0.00 0.00 46.78 3.24
1228 2702 1.381872 ACAGATCCAGGACTCCCCG 60.382 63.158 0.00 0.00 40.87 5.73
1231 2705 0.980231 AGGCACAGATCCAGGACTCC 60.980 60.000 0.00 0.00 0.00 3.85
1233 2707 0.252421 TCAGGCACAGATCCAGGACT 60.252 55.000 0.00 0.00 0.00 3.85
1294 2769 3.552132 TCCTAAAATCAGCGCCACATA 57.448 42.857 2.29 0.00 0.00 2.29
1342 2827 4.109320 ACCCCAAAGCTTACCTACTACAT 58.891 43.478 0.00 0.00 0.00 2.29
1343 2828 3.523792 ACCCCAAAGCTTACCTACTACA 58.476 45.455 0.00 0.00 0.00 2.74
1344 2829 4.713814 ACTACCCCAAAGCTTACCTACTAC 59.286 45.833 0.00 0.00 0.00 2.73
1345 2830 4.951603 ACTACCCCAAAGCTTACCTACTA 58.048 43.478 0.00 0.00 0.00 1.82
1346 2831 3.799719 ACTACCCCAAAGCTTACCTACT 58.200 45.455 0.00 0.00 0.00 2.57
1347 2832 5.364735 TCATACTACCCCAAAGCTTACCTAC 59.635 44.000 0.00 0.00 0.00 3.18
1348 2833 5.531198 TCATACTACCCCAAAGCTTACCTA 58.469 41.667 0.00 0.00 0.00 3.08
1369 2854 2.204463 TGGGGCCAGTTATCTGAATCA 58.796 47.619 4.39 0.00 43.76 2.57
1379 2864 0.324645 CCTAGCATTTGGGGCCAGTT 60.325 55.000 4.39 0.00 0.00 3.16
1416 2901 4.934356 AGTTAATGATCCCTTTCAGGCAA 58.066 39.130 0.00 0.00 32.73 4.52
1518 3003 4.555262 CGCAGGTTGGATGTAAACAAAAT 58.445 39.130 0.00 0.00 0.00 1.82
1553 3038 3.158676 GGGAGACAGAGTCTACTTGTGT 58.841 50.000 9.10 0.14 43.53 3.72
1588 3075 8.621532 TGGTATTTCAATGGCTAATCAGATAC 57.378 34.615 0.00 0.00 0.00 2.24
1593 3080 4.275689 CGCTGGTATTTCAATGGCTAATCA 59.724 41.667 0.00 0.00 0.00 2.57
1594 3081 4.320494 CCGCTGGTATTTCAATGGCTAATC 60.320 45.833 0.00 0.00 0.00 1.75
1618 3105 2.898840 CTACGCCCATGCCTGCTG 60.899 66.667 0.00 0.00 0.00 4.41
1629 3116 2.789491 AGAATTAGTACGCCTACGCC 57.211 50.000 0.00 0.00 45.53 5.68
1642 3129 5.368145 AGCAACAGACTGACACAAGAATTA 58.632 37.500 10.08 0.00 0.00 1.40
1674 3163 3.222173 ACACCACTCAAAGCATAACCA 57.778 42.857 0.00 0.00 0.00 3.67
1686 3175 1.453155 CCCAACATGCTACACCACTC 58.547 55.000 0.00 0.00 0.00 3.51
1689 3178 0.039472 ATGCCCAACATGCTACACCA 59.961 50.000 0.00 0.00 37.70 4.17
1698 3187 1.921982 TGTGCTAACATGCCCAACAT 58.078 45.000 0.00 0.00 40.66 2.71
1766 3256 5.345741 CCAAGTTAAATTTCTGAATGTGCCG 59.654 40.000 0.00 0.00 0.00 5.69
1812 3302 4.394300 GTGCTGTTGTTCTCATCTGCTATT 59.606 41.667 0.00 0.00 38.30 1.73
1817 3307 4.825546 AAAGTGCTGTTGTTCTCATCTG 57.174 40.909 0.00 0.00 0.00 2.90
1843 3333 0.955919 GTCCTCTTGTTCCCCGCAAG 60.956 60.000 0.00 0.00 43.26 4.01
1860 3350 3.691118 TCACTTCTATGCAAGGCAATGTC 59.309 43.478 0.00 0.00 43.62 3.06
1894 3384 3.488310 GTGAGCGTTTGAGAAACTACGAA 59.512 43.478 0.00 0.00 39.23 3.85
1931 3425 6.398234 ACTATGTTGCGAAGAGACTATCAT 57.602 37.500 0.00 0.00 0.00 2.45
1937 3431 7.751047 TGTATAAACTATGTTGCGAAGAGAC 57.249 36.000 0.00 0.00 0.00 3.36
2325 3819 1.907936 TGAAATTCAGGCAATTGGGGG 59.092 47.619 7.72 0.00 34.69 5.40
2392 3888 2.462565 GCAAACACTCACGCGTTAAAAG 59.537 45.455 10.22 7.63 0.00 2.27
2393 3889 2.096174 AGCAAACACTCACGCGTTAAAA 59.904 40.909 10.22 0.00 0.00 1.52
2394 3890 1.666700 AGCAAACACTCACGCGTTAAA 59.333 42.857 10.22 0.00 0.00 1.52
2395 3891 1.292061 AGCAAACACTCACGCGTTAA 58.708 45.000 10.22 0.00 0.00 2.01
2396 3892 2.137129 TAGCAAACACTCACGCGTTA 57.863 45.000 10.22 0.00 0.00 3.18
2397 3893 1.260561 CTTAGCAAACACTCACGCGTT 59.739 47.619 10.22 0.00 0.00 4.84
2398 3894 0.859232 CTTAGCAAACACTCACGCGT 59.141 50.000 5.58 5.58 0.00 6.01
2482 3978 8.666573 CATTTAGCACATTAATGGATGCAAAAA 58.333 29.630 24.72 22.59 40.63 1.94
2550 4046 5.947228 TCCATCTTGTAAAGCTCAGTTTG 57.053 39.130 0.00 0.00 45.70 2.93
2562 4058 5.114764 TCCAATCAGCATTCCATCTTGTA 57.885 39.130 0.00 0.00 0.00 2.41
2820 4317 2.168313 TGACAGCACAACAGAGAACAGA 59.832 45.455 0.00 0.00 0.00 3.41
2821 4318 2.286294 GTGACAGCACAACAGAGAACAG 59.714 50.000 0.00 0.00 44.51 3.16
2822 4319 2.279741 GTGACAGCACAACAGAGAACA 58.720 47.619 0.00 0.00 44.51 3.18
3268 4782 5.886960 AGAGGACATGCAAAAATGTAGTC 57.113 39.130 0.00 0.00 40.87 2.59
3346 4860 7.422399 TCCAAAAGTAACAGCAAAGAACATAC 58.578 34.615 0.00 0.00 0.00 2.39
3398 4917 4.104383 TGCTCTCAAAGTTTTGGGATCT 57.896 40.909 7.57 0.00 45.83 2.75
3665 5201 0.550914 AGCCCTTGCCGATTTCCATA 59.449 50.000 0.00 0.00 38.69 2.74
3709 5246 5.696724 CGTGGAATATAGGATCAACCAGTTC 59.303 44.000 0.00 0.00 42.04 3.01
3754 5291 8.181904 ACTCAATCAAAACATACACAAATCCT 57.818 30.769 0.00 0.00 0.00 3.24
3793 5330 0.853530 AGAAGGGAGCTGGGTTTGTT 59.146 50.000 0.00 0.00 0.00 2.83
4046 5584 7.771927 AATGTCAGAAAAAGATCAAGGACAT 57.228 32.000 0.00 0.00 0.00 3.06
4296 5844 4.579647 GGTGAATACCAAGGTTTCCCTA 57.420 45.455 0.00 0.00 46.71 3.53
4515 6066 5.051816 CGTGGTACCTCTTAACTGAACAAA 58.948 41.667 14.36 0.00 0.00 2.83
4789 6348 2.860735 GCACATCGATTCTGGTCACTAC 59.139 50.000 0.00 0.00 0.00 2.73
5034 6596 1.463214 TTCAGTTCCCAGGCCTCCA 60.463 57.895 0.00 0.00 0.00 3.86
5055 6618 2.443255 ACTAGGCACCTATGAATTGGGG 59.557 50.000 0.00 0.00 0.00 4.96
5062 6625 4.286032 AGACAACAAACTAGGCACCTATGA 59.714 41.667 0.00 0.00 0.00 2.15
5085 6648 8.475639 CCTACAGCTAACTAAATGAACCTTAGA 58.524 37.037 0.00 0.00 31.91 2.10
5170 6737 4.705023 ACAAGGCCCTGTGTATATTTTGAC 59.295 41.667 6.09 0.00 0.00 3.18
5211 6779 3.309296 AGAAGACTTTGGTGTCCTCAGA 58.691 45.455 0.00 0.00 37.66 3.27
5308 6877 1.681327 TCGGCGCTTAGTCCCTTCT 60.681 57.895 7.64 0.00 0.00 2.85
5311 6880 2.058595 ATGTCGGCGCTTAGTCCCT 61.059 57.895 7.64 0.00 0.00 4.20
5365 6952 9.553064 GAAATGGTAGAATCTGATGAATACAGT 57.447 33.333 0.00 0.00 36.81 3.55
5374 7039 7.446625 GGCACAATAGAAATGGTAGAATCTGAT 59.553 37.037 0.00 0.00 0.00 2.90
5418 7083 9.685276 AAAATGAAATGTATCCTGTGATCACTA 57.315 29.630 25.55 12.22 32.18 2.74
5503 7171 1.003839 GACCAATCACGTCAGCCCA 60.004 57.895 0.00 0.00 0.00 5.36
5506 7174 1.738099 AGCGACCAATCACGTCAGC 60.738 57.895 0.00 0.00 33.16 4.26
5517 7185 0.739462 CGAATTACCTGCAGCGACCA 60.739 55.000 8.66 0.00 0.00 4.02
5644 7316 1.592131 CTCTCTGCATCTCGCCAGC 60.592 63.158 0.00 0.00 41.33 4.85
5726 7407 4.811557 AGCCTACAACTTTCTATGCGATTC 59.188 41.667 0.00 0.00 0.00 2.52
5740 7421 5.468072 CCATGATACAGATGAAGCCTACAAC 59.532 44.000 0.00 0.00 0.00 3.32
5830 7511 4.970662 AGAATATCGCAACAACAGCAAT 57.029 36.364 0.00 0.00 0.00 3.56
5862 7543 9.088512 CAGATAACAGAACACTATCAAGGTAAC 57.911 37.037 0.00 0.00 0.00 2.50
5898 7579 3.949132 TGTGCTTCAACATATGCTGGTA 58.051 40.909 1.58 0.00 0.00 3.25
5916 7597 5.574830 TCAAAAGTTGTGGAATTCGTTTGTG 59.425 36.000 0.00 0.00 33.53 3.33
5945 7626 5.869753 ACTGCTTAATCAACACTGATCAC 57.130 39.130 0.00 0.00 41.66 3.06
5960 7641 4.929819 TGCATAATCGACCTACTGCTTA 57.070 40.909 0.00 0.00 0.00 3.09
5961 7642 3.819564 TGCATAATCGACCTACTGCTT 57.180 42.857 0.00 0.00 0.00 3.91
5962 7643 3.458189 GTTGCATAATCGACCTACTGCT 58.542 45.455 0.00 0.00 0.00 4.24
5963 7644 2.544267 GGTTGCATAATCGACCTACTGC 59.456 50.000 0.00 0.00 37.50 4.40
5964 7645 3.804325 CAGGTTGCATAATCGACCTACTG 59.196 47.826 5.20 0.00 46.56 2.74
5965 7646 3.451178 ACAGGTTGCATAATCGACCTACT 59.549 43.478 5.20 0.00 46.56 2.57
5966 7647 3.793559 ACAGGTTGCATAATCGACCTAC 58.206 45.455 5.20 0.00 46.56 3.18
5967 7648 4.081365 TCAACAGGTTGCATAATCGACCTA 60.081 41.667 5.20 0.00 46.56 3.08
5969 7650 3.006940 TCAACAGGTTGCATAATCGACC 58.993 45.455 7.28 0.00 40.24 4.79
5970 7651 4.882671 ATCAACAGGTTGCATAATCGAC 57.117 40.909 7.28 0.00 40.24 4.20
5971 7652 6.054941 ACATATCAACAGGTTGCATAATCGA 58.945 36.000 7.28 0.00 40.24 3.59
5972 7653 6.203530 AGACATATCAACAGGTTGCATAATCG 59.796 38.462 7.28 3.76 40.24 3.34
5973 7654 7.502120 AGACATATCAACAGGTTGCATAATC 57.498 36.000 7.28 8.31 40.24 1.75
5974 7655 9.224267 GATAGACATATCAACAGGTTGCATAAT 57.776 33.333 7.28 0.00 40.24 1.28
5975 7656 7.661437 GGATAGACATATCAACAGGTTGCATAA 59.339 37.037 7.28 0.00 39.76 1.90
5976 7657 7.161404 GGATAGACATATCAACAGGTTGCATA 58.839 38.462 7.28 6.93 39.76 3.14
6050 7738 3.012518 ACTTCCTTGATGTGCTACATGC 58.987 45.455 6.52 0.00 39.27 4.06
6071 7759 4.597004 AGTATGTCTTCCCTACTTCACGA 58.403 43.478 0.00 0.00 0.00 4.35
6074 7762 6.380274 CAGGTAAGTATGTCTTCCCTACTTCA 59.620 42.308 0.00 0.00 39.92 3.02
6095 7783 4.104102 TGTGTATTTCCTTTCAGTCCAGGT 59.896 41.667 0.00 0.00 0.00 4.00
6133 7883 0.393077 AAGCGTCTGTGCCAACTACT 59.607 50.000 0.00 0.00 34.65 2.57
6134 7884 0.512952 CAAGCGTCTGTGCCAACTAC 59.487 55.000 0.00 0.00 34.65 2.73
6136 7886 0.882042 CTCAAGCGTCTGTGCCAACT 60.882 55.000 0.00 0.00 34.65 3.16
6139 7889 2.666190 GCTCAAGCGTCTGTGCCA 60.666 61.111 2.66 0.00 34.65 4.92
6194 8211 2.501316 TGTGGCTTTAGATCTGCAGCTA 59.499 45.455 21.19 15.62 32.52 3.32
6234 8251 4.209288 GGTTCATGTGCTAGCTTACATACG 59.791 45.833 17.56 9.00 35.86 3.06
6293 8310 3.703127 ACTCCCCTTCCCGTTCGC 61.703 66.667 0.00 0.00 0.00 4.70
6306 8323 2.930562 AGTGCCTGGGGTCACTCC 60.931 66.667 0.00 0.00 36.07 3.85
6307 8324 2.665603 GAGTGCCTGGGGTCACTC 59.334 66.667 14.45 14.45 43.53 3.51
6308 8325 2.930562 GGAGTGCCTGGGGTCACT 60.931 66.667 5.30 5.30 40.65 3.41
6309 8326 4.035102 GGGAGTGCCTGGGGTCAC 62.035 72.222 0.00 0.00 32.66 3.67
6327 8344 0.673644 GCATCATCGGTTATCGGGGG 60.674 60.000 0.00 0.00 39.77 5.40
6328 8345 0.321671 AGCATCATCGGTTATCGGGG 59.678 55.000 0.00 0.00 39.77 5.73
6329 8346 1.270305 ACAGCATCATCGGTTATCGGG 60.270 52.381 0.00 0.00 39.77 5.14
6330 8347 2.061773 GACAGCATCATCGGTTATCGG 58.938 52.381 0.00 0.00 39.77 4.18
6331 8348 2.061773 GGACAGCATCATCGGTTATCG 58.938 52.381 0.00 0.00 40.90 2.92
6332 8349 2.417719 GGGACAGCATCATCGGTTATC 58.582 52.381 0.00 0.00 0.00 1.75
6333 8350 1.270305 CGGGACAGCATCATCGGTTAT 60.270 52.381 0.00 0.00 0.00 1.89
6334 8351 0.104120 CGGGACAGCATCATCGGTTA 59.896 55.000 0.00 0.00 0.00 2.85
6335 8352 1.153369 CGGGACAGCATCATCGGTT 60.153 57.895 0.00 0.00 0.00 4.44
6336 8353 2.058001 TCGGGACAGCATCATCGGT 61.058 57.895 0.00 0.00 0.00 4.69
6337 8354 1.592669 GTCGGGACAGCATCATCGG 60.593 63.158 0.00 0.00 0.00 4.18
6338 8355 0.460109 TTGTCGGGACAGCATCATCG 60.460 55.000 1.37 0.00 42.94 3.84
6339 8356 1.009829 GTTGTCGGGACAGCATCATC 58.990 55.000 10.28 0.00 42.94 2.92
6340 8357 0.392998 GGTTGTCGGGACAGCATCAT 60.393 55.000 15.85 0.00 43.16 2.45
6341 8358 1.003839 GGTTGTCGGGACAGCATCA 60.004 57.895 15.85 0.00 43.16 3.07
6342 8359 2.100631 CGGTTGTCGGGACAGCATC 61.101 63.158 15.85 1.07 43.16 3.91
6343 8360 2.047274 CGGTTGTCGGGACAGCAT 60.047 61.111 15.85 0.00 43.16 3.79
6365 8382 2.433664 GTTGTCGCGGGGGTACTG 60.434 66.667 6.13 0.00 0.00 2.74
6366 8383 3.698820 GGTTGTCGCGGGGGTACT 61.699 66.667 6.13 0.00 0.00 2.73
6406 8423 1.424493 CGAGATGAAGGCTCCGTTGC 61.424 60.000 0.00 0.00 0.00 4.17
6408 8425 1.153549 GCGAGATGAAGGCTCCGTT 60.154 57.895 0.00 0.00 0.00 4.44
6534 8596 7.183112 TGGGTAGTGATTTTATAAGAACTCCCA 59.817 37.037 15.46 15.46 33.56 4.37
6557 8619 0.321671 ACGACACAACATCTCCTGGG 59.678 55.000 0.00 0.00 0.00 4.45
6558 8620 1.800586 CAACGACACAACATCTCCTGG 59.199 52.381 0.00 0.00 0.00 4.45
6574 8641 0.248054 AAGCTCACGCAAACACAACG 60.248 50.000 0.00 0.00 39.10 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.