AutoCloner

Multiple sequence alignment - TraesCS2D01G460700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G460700	chr2D	100.000	2231	0	0	1	2231	567050604	567052834	0.000000e+00	4120.0
1	TraesCS2D01G460700	chr2D	80.220	546	47	29	857	1375	567568880	567569391	9.800000e-94	353.0
2	TraesCS2D01G460700	chr2D	78.226	620	72	32	789	1375	567594647	567595236	2.740000e-89	339.0
3	TraesCS2D01G460700	chr2D	73.304	678	112	43	644	1301	567584369	567584997	3.780000e-43	185.0
4	TraesCS2D01G460700	chr2D	79.920	249	30	16	867	1110	567589746	567589979	4.930000e-37	165.0
5	TraesCS2D01G460700	chr2D	86.111	144	17	3	2075	2216	446597545	446597403	3.840000e-33	152.0
6	TraesCS2D01G460700	chr2D	83.562	146	21	3	2075	2217	326408005	326407860	1.390000e-27	134.0
7	TraesCS2D01G460700	chr2D	83.212	137	18	5	2086	2219	492068626	492068492	1.080000e-23	121.0
8	TraesCS2D01G460700	chr2D	74.247	299	43	13	181	447	543287764	543288060	6.560000e-16	95.3
9	TraesCS2D01G460700	chr2A	90.751	865	49	14	883	1732	706903553	706904401	0.000000e+00	1125.0
10	TraesCS2D01G460700	chr2A	90.187	856	52	6	1394	2217	706919725	706920580	0.000000e+00	1086.0
11	TraesCS2D01G460700	chr2A	89.163	812	58	15	583	1386	706918959	706919748	0.000000e+00	985.0
12	TraesCS2D01G460700	chr2A	91.335	427	18	9	472	884	706902848	706903269	1.160000e-157	566.0
13	TraesCS2D01G460700	chr2A	78.846	572	60	30	855	1388	707040097	707040645	1.650000e-86	329.0
14	TraesCS2D01G460700	chr2A	72.444	1125	167	81	644	1723	707063979	707065005	6.200000e-56	228.0
15	TraesCS2D01G460700	chr2A	79.472	341	38	15	981	1297	707222103	707222435	1.740000e-51	213.0
16	TraesCS2D01G460700	chr2A	77.364	349	58	16	1885	2217	100394005	100394348	1.050000e-43	187.0
17	TraesCS2D01G460700	chr2A	86.301	73	10	0	1977	2049	504327672	504327600	1.840000e-11	80.5
18	TraesCS2D01G460700	chr2A	96.970	33	0	1	424	456	765889888	765889857	1.000000e-03	54.7
19	TraesCS2D01G460700	chr2B	86.861	959	40	33	471	1386	680062794	680063709	0.000000e+00	994.0
20	TraesCS2D01G460700	chr2B	88.041	485	35	6	1	474	680062291	680062763	9.000000e-154	553.0
21	TraesCS2D01G460700	chr2B	82.535	355	26	11	1393	1732	680063685	680064018	1.690000e-71	279.0
22	TraesCS2D01G460700	chr2B	77.778	549	52	33	857	1375	680221227	680221735	7.850000e-70	274.0
23	TraesCS2D01G460700	chr2B	75.758	561	67	39	796	1339	680308547	680309055	3.730000e-53	219.0
24	TraesCS2D01G460700	chr2B	81.560	141	23	3	2081	2219	577212752	577212613	1.810000e-21	113.0
25	TraesCS2D01G460700	chr2B	100.000	31	0	0	1736	1766	680064039	680064069	8.610000e-05	58.4
26	TraesCS2D01G460700	chr4A	78.453	362	58	10	1	343	544038208	544038568	3.730000e-53	219.0
27	TraesCS2D01G460700	chr7D	75.260	384	64	21	88	456	453168078	453168445	1.070000e-33	154.0
28	TraesCS2D01G460700	chr7D	79.808	208	28	9	105	299	538512252	538512458	2.990000e-29	139.0
29	TraesCS2D01G460700	chr5D	84.892	139	17	4	2084	2219	414228712	414228849	1.070000e-28	137.0
30	TraesCS2D01G460700	chr5D	79.358	218	25	16	2014	2216	521480851	521481063	3.860000e-28	135.0
31	TraesCS2D01G460700	chr3A	77.689	251	37	9	98	331	12251281	12251529	3.860000e-28	135.0
32	TraesCS2D01G460700	chrUn	77.075	253	43	8	993	1235	155033223	155033470	5.000000e-27	132.0
33	TraesCS2D01G460700	chr5B	83.448	145	20	4	2075	2217	141447741	141447599	5.000000e-27	132.0
34	TraesCS2D01G460700	chr5B	75.403	248	44	11	75	307	485897080	485896835	1.090000e-18	104.0
35	TraesCS2D01G460700	chr3B	77.075	253	43	8	993	1235	792434456	792434209	5.000000e-27	132.0
36	TraesCS2D01G460700	chr3B	76.680	253	44	8	993	1235	792344135	792343888	2.330000e-25	126.0
37	TraesCS2D01G460700	chr1B	83.168	101	16	1	71	170	68576174	68576074	8.480000e-15	91.6
38	TraesCS2D01G460700	chr6B	83.696	92	14	1	65	155	148174113	148174204	3.950000e-13	86.1
39	TraesCS2D01G460700	chr6A	95.349	43	2	0	1886	1928	93884151	93884109	3.980000e-08	69.4
40	TraesCS2D01G460700	chr6A	92.683	41	0	2	416	456	28007367	28007404	3.090000e-04	56.5
41	TraesCS2D01G460700	chr3D	100.000	29	0	0	362	390	551204864	551204836	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G460700	chr2D	567050604	567052834	2230	False	4120.0	4120	100.00000	1	2231	1	chr2D.!!$F2	2230
1	TraesCS2D01G460700	chr2D	567568880	567569391	511	False	353.0	353	80.22000	857	1375	1	chr2D.!!$F3	518
2	TraesCS2D01G460700	chr2D	567594647	567595236	589	False	339.0	339	78.22600	789	1375	1	chr2D.!!$F6	586
3	TraesCS2D01G460700	chr2A	706918959	706920580	1621	False	1035.5	1086	89.67500	583	2217	2	chr2A.!!$F6	1634
4	TraesCS2D01G460700	chr2A	706902848	706904401	1553	False	845.5	1125	91.04300	472	1732	2	chr2A.!!$F5	1260
5	TraesCS2D01G460700	chr2A	707040097	707040645	548	False	329.0	329	78.84600	855	1388	1	chr2A.!!$F2	533
6	TraesCS2D01G460700	chr2A	707063979	707065005	1026	False	228.0	228	72.44400	644	1723	1	chr2A.!!$F3	1079
7	TraesCS2D01G460700	chr2B	680062291	680064069	1778	False	471.1	994	89.35925	1	1766	4	chr2B.!!$F3	1765
8	TraesCS2D01G460700	chr2B	680221227	680221735	508	False	274.0	274	77.77800	857	1375	1	chr2B.!!$F1	518
9	TraesCS2D01G460700	chr2B	680308547	680309055	508	False	219.0	219	75.75800	796	1339	1	chr2B.!!$F2	543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
416	428	0.163788	CTGCATTCGTGTCCGTGAAC	59.836	55.0	0.0	0.0	35.01	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2192	2775	1.55013	TTCCAGTCGGTCACCCATCC	61.55	60.0	0.0	0.0	0.0	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	4.479993	CTTCCCCTCCGGCTGCAG	62.480	72.222	10.11	10.11	0.00	4.41
60	61	2.358737	CAGCCGGTGGTTCCACTC	60.359	66.667	19.42	10.17	37.16	3.51
62	63	3.948719	GCCGGTGGTTCCACTCCA	61.949	66.667	19.42	0.00	37.16	3.86
108	109	4.734695	GCCTTTTGCACTGAAGCATATACC	60.735	45.833	0.00	0.00	45.19	2.73
120	121	2.785857	AGCATATACCTCCTGGGCTTTT	59.214	45.455	0.00	0.00	39.10	2.27
136	137	4.680237	TTGGCAGTCCGGTGAGCG	62.680	66.667	0.00	0.00	34.14	5.03
158	160	0.617413	CTGCAGGACATGGGAAGACT	59.383	55.000	5.57	0.00	0.00	3.24
163	165	3.118261	GCAGGACATGGGAAGACTAATGA	60.118	47.826	0.00	0.00	0.00	2.57
177	179	2.236146	ACTAATGAATCCGCCACAGTCA	59.764	45.455	0.00	0.00	0.00	3.41
179	181	0.615331	ATGAATCCGCCACAGTCAGT	59.385	50.000	0.00	0.00	0.00	3.41
200	202	9.719279	GTCAGTCATAAACTAGTGTAGTGTATC	57.281	37.037	0.00	0.00	37.15	2.24
206	208	5.972107	AACTAGTGTAGTGTATCCGTGTT	57.028	39.130	0.00	0.00	39.39	3.32
207	209	5.306532	ACTAGTGTAGTGTATCCGTGTTG	57.693	43.478	0.00	0.00	37.69	3.33
209	211	3.909430	AGTGTAGTGTATCCGTGTTGTG	58.091	45.455	0.00	0.00	0.00	3.33
216	218	1.274167	GTATCCGTGTTGTGGGAGTGA	59.726	52.381	0.00	0.00	35.40	3.41
234	246	2.996168	GAAGCTCCGCGGGCACATAT	62.996	60.000	31.19	16.61	0.00	1.78
359	371	4.385825	TCGTCCTGCTAGTTTGAATTGTT	58.614	39.130	0.00	0.00	0.00	2.83
377	389	3.839293	TGTTGTTAAAATGTATGCGGGC	58.161	40.909	0.00	0.00	0.00	6.13
379	391	4.081972	TGTTGTTAAAATGTATGCGGGCAT	60.082	37.500	11.34	11.34	40.19	4.40
395	407	2.053865	CATGGTTGAATGGCGGCCT	61.054	57.895	21.46	0.00	0.00	5.19
396	408	1.754234	ATGGTTGAATGGCGGCCTC	60.754	57.895	21.46	11.00	0.00	4.70
397	409	3.140814	GGTTGAATGGCGGCCTCC	61.141	66.667	21.46	4.25	0.00	4.30
398	410	2.044946	GTTGAATGGCGGCCTCCT	60.045	61.111	21.46	4.04	0.00	3.69
399	411	2.045045	TTGAATGGCGGCCTCCTG	60.045	61.111	21.46	0.00	0.00	3.86
412	424	1.079819	CTCCTGCATTCGTGTCCGT	60.080	57.895	0.00	0.00	35.01	4.69
416	428	0.163788	CTGCATTCGTGTCCGTGAAC	59.836	55.000	0.00	0.00	35.01	3.18
425	437	3.319198	TCCGTGAACTGGCCTCCC	61.319	66.667	3.32	0.00	0.00	4.30
456	468	2.477863	GGACGGATGCGGAAGAAAATTG	60.478	50.000	12.44	0.00	0.00	2.32
459	471	2.223340	CGGATGCGGAAGAAAATTGAGG	60.223	50.000	0.00	0.00	0.00	3.86
604	670	2.301346	CCATCCTTGATCGGGAAAAGG	58.699	52.381	10.61	6.84	41.60	3.11
614	680	4.943705	TGATCGGGAAAAGGAAAAGATCTG	59.056	41.667	0.00	0.00	35.41	2.90
615	681	3.081804	TCGGGAAAAGGAAAAGATCTGC	58.918	45.455	0.00	0.00	0.00	4.26
616	682	3.084786	CGGGAAAAGGAAAAGATCTGCT	58.915	45.455	0.00	0.00	0.00	4.24
741	825	1.655885	CCCATACATGCACATGCCG	59.344	57.895	10.50	0.00	42.39	5.69
892	1279	1.523095	CTCGCCTATAAGAAGCAACGC	59.477	52.381	0.00	0.00	0.00	4.84
950	1400	1.738365	CGCAATCCAGACTGTCTCCTG	60.738	57.143	7.49	4.24	0.00	3.86
958	1408	0.530288	GACTGTCTCCTGTCCTCAGC	59.470	60.000	0.00	0.00	40.09	4.26
972	1422	2.770802	TCCTCAGCCGTAGTACTCTACT	59.229	50.000	0.00	0.00	42.95	2.57
975	1425	1.865970	CAGCCGTAGTACTCTACTCCG	59.134	57.143	0.00	0.00	42.95	4.63
977	1427	2.134346	GCCGTAGTACTCTACTCCGAG	58.866	57.143	0.00	0.00	40.05	4.63
979	1432	3.791245	CCGTAGTACTCTACTCCGAGTT	58.209	50.000	6.31	0.00	41.27	3.01
1215	1710	1.000896	GGTGGTGATTCCTGGGGTG	60.001	63.158	0.00	0.00	37.07	4.61
1253	1755	5.259832	TCATCTCTACTTCATGTGCTGAG	57.740	43.478	0.00	0.00	34.68	3.35
1258	1760	4.733850	TCTACTTCATGTGCTGAGTTACG	58.266	43.478	0.00	0.00	34.68	3.18
1355	1872	0.438830	GTTTCGCTCATGTCCACGTC	59.561	55.000	0.00	0.00	0.00	4.34
1378	1899	7.103641	GTCCCTAAATGAGTGTCTGTATTTCA	58.896	38.462	0.00	0.00	0.00	2.69
1379	1900	7.278868	GTCCCTAAATGAGTGTCTGTATTTCAG	59.721	40.741	0.00	0.00	44.85	3.02
1380	1901	7.038302	TCCCTAAATGAGTGTCTGTATTTCAGT	60.038	37.037	0.00	0.00	43.97	3.41
1381	1902	8.258007	CCCTAAATGAGTGTCTGTATTTCAGTA	58.742	37.037	0.00	0.00	43.97	2.74
1382	1903	9.823647	CCTAAATGAGTGTCTGTATTTCAGTAT	57.176	33.333	0.00	0.00	43.97	2.12
1386	1907	9.950496	AATGAGTGTCTGTATTTCAGTATTTCT	57.050	29.630	0.00	0.00	43.97	2.52
1387	1908	8.988064	TGAGTGTCTGTATTTCAGTATTTCTC	57.012	34.615	0.00	0.00	43.97	2.87
1507	2041	2.533266	ACTTTGTCAGTGTGATCGCT	57.467	45.000	7.94	0.00	32.83	4.93
1522	2056	6.303259	GTGTGATCGCTTTCTTGAATAAACAC	59.697	38.462	7.94	0.00	0.00	3.32
1527	2069	5.095490	CGCTTTCTTGAATAAACACATCCC	58.905	41.667	0.00	0.00	0.00	3.85
1554	2096	4.611943	ACAGGTTGAATCATCGATCGTAG	58.388	43.478	15.94	9.04	0.00	3.51
1766	2347	8.570488	CAATCAGTGTGCATATACATTATGGTT	58.430	33.333	0.00	0.00	32.43	3.67
1767	2348	9.791801	AATCAGTGTGCATATACATTATGGTTA	57.208	29.630	0.00	0.00	32.43	2.85
1781	2362	1.555967	TGGTTAAGCAATTCCCAGGC	58.444	50.000	4.54	0.00	0.00	4.85
1905	2487	4.258543	TCAAATTGGTATCAGAACCGACC	58.741	43.478	0.00	0.00	42.91	4.79
1906	2488	3.277142	AATTGGTATCAGAACCGACCC	57.723	47.619	0.00	0.00	42.91	4.46
1966	2548	1.948508	CACGTGTGGTCCATTGTGG	59.051	57.895	7.58	0.00	39.43	4.17
2030	2612	5.297029	GTGTATTAAGAGGGAACATTCCTGC	59.703	44.000	10.45	3.40	46.72	4.85
2034	2616	0.620556	GAGGGAACATTCCTGCTGGA	59.379	55.000	8.48	8.48	46.72	3.86
2080	2662	3.891977	TGAGTGGAGGTGTATATGAGAGC	59.108	47.826	0.00	0.00	0.00	4.09
2098	2680	5.070981	TGAGAGCCTGACTTAATAGGAATGG	59.929	44.000	0.00	0.00	36.11	3.16
2103	2685	6.615726	AGCCTGACTTAATAGGAATGGTAGAA	59.384	38.462	0.00	0.00	36.11	2.10
2109	2691	8.840200	ACTTAATAGGAATGGTAGAACTCTCA	57.160	34.615	0.00	0.00	0.00	3.27
2144	2727	1.432807	TCCTTCTTTTTGGGAGGCCAT	59.567	47.619	5.01	0.00	0.00	4.40
2157	2740	1.541588	GAGGCCATTCGCAAAGAACTT	59.458	47.619	5.01	0.00	42.39	2.66
2184	2767	0.396811	AAGCGTGCTAGGTTTGGAGT	59.603	50.000	0.00	0.00	0.00	3.85
2190	2773	4.250464	CGTGCTAGGTTTGGAGTGATTTA	58.750	43.478	0.00	0.00	0.00	1.40
2192	2775	5.163854	CGTGCTAGGTTTGGAGTGATTTAAG	60.164	44.000	0.00	0.00	0.00	1.85
2217	2800	1.202604	GGTGACCGACTGGAAAGTTGA	60.203	52.381	0.00	0.00	39.21	3.18
2218	2801	2.550208	GGTGACCGACTGGAAAGTTGAT	60.550	50.000	0.00	0.00	39.21	2.57
2219	2802	3.306502	GGTGACCGACTGGAAAGTTGATA	60.307	47.826	0.00	0.00	39.21	2.15
2220	2803	3.927142	GTGACCGACTGGAAAGTTGATAG	59.073	47.826	0.00	0.00	39.21	2.08
2221	2804	2.930682	GACCGACTGGAAAGTTGATAGC	59.069	50.000	0.00	0.00	39.21	2.97
2222	2805	1.927174	CCGACTGGAAAGTTGATAGCG	59.073	52.381	0.00	0.00	37.49	4.26
2223	2806	1.324736	CGACTGGAAAGTTGATAGCGC	59.675	52.381	0.00	0.00	0.00	5.92
2224	2807	2.346803	GACTGGAAAGTTGATAGCGCA	58.653	47.619	11.47	0.00	0.00	6.09
2225	2808	2.076863	ACTGGAAAGTTGATAGCGCAC	58.923	47.619	11.47	0.00	0.00	5.34
2226	2809	2.076100	CTGGAAAGTTGATAGCGCACA	58.924	47.619	11.47	3.70	0.00	4.57
2227	2810	2.483877	CTGGAAAGTTGATAGCGCACAA	59.516	45.455	11.47	10.43	0.00	3.33
2228	2811	2.483877	TGGAAAGTTGATAGCGCACAAG	59.516	45.455	11.47	0.00	0.00	3.16
2229	2812	2.484264	GGAAAGTTGATAGCGCACAAGT	59.516	45.455	11.47	12.90	0.00	3.16
2230	2813	3.482786	GAAAGTTGATAGCGCACAAGTG	58.517	45.455	11.47	0.00	31.33	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	51	0.321564	CGCTCATTGGAGTGGAACCA	60.322	55.000	0.00	0.00	45.78	3.67
60	61	1.746615	CTCCCACACCGCTCATTGG	60.747	63.158	0.00	0.00	0.00	3.16
62	63	2.045926	GCTCCCACACCGCTCATT	60.046	61.111	0.00	0.00	0.00	2.57
108	109	1.228675	ACTGCCAAAAGCCCAGGAG	60.229	57.895	0.00	0.00	42.71	3.69
136	137	3.286694	TTCCCATGTCCTGCAGCCC	62.287	63.158	8.66	0.48	0.00	5.19
158	160	2.236146	ACTGACTGTGGCGGATTCATTA	59.764	45.455	0.00	0.00	0.00	1.90
163	165	0.615331	ATGACTGACTGTGGCGGATT	59.385	50.000	0.00	0.00	0.00	3.01
177	179	7.555554	ACGGATACACTACACTAGTTTATGACT	59.444	37.037	0.00	0.00	42.55	3.41
179	181	7.337689	ACACGGATACACTACACTAGTTTATGA	59.662	37.037	0.00	0.00	36.76	2.15
200	202	1.507141	GCTTCACTCCCACAACACGG	61.507	60.000	0.00	0.00	0.00	4.94
311	323	1.668237	GTGCAAACACGGCCAAATTTT	59.332	42.857	2.24	0.00	36.98	1.82
339	351	5.438761	ACAACAATTCAAACTAGCAGGAC	57.561	39.130	0.00	0.00	0.00	3.85
351	363	6.587990	CCCGCATACATTTTAACAACAATTCA	59.412	34.615	0.00	0.00	0.00	2.57
359	371	3.181482	CCATGCCCGCATACATTTTAACA	60.181	43.478	1.04	0.00	34.91	2.41
368	380	1.032014	ATTCAACCATGCCCGCATAC	58.968	50.000	1.04	0.00	34.91	2.39
377	389	2.008268	GAGGCCGCCATTCAACCATG	62.008	60.000	13.15	0.00	0.00	3.66
379	391	2.361104	GAGGCCGCCATTCAACCA	60.361	61.111	13.15	0.00	0.00	3.67
395	407	1.374125	CACGGACACGAATGCAGGA	60.374	57.895	0.00	0.00	44.60	3.86
396	408	0.948623	TTCACGGACACGAATGCAGG	60.949	55.000	0.00	0.00	44.60	4.85
397	409	0.163788	GTTCACGGACACGAATGCAG	59.836	55.000	0.00	0.00	44.60	4.41
398	410	0.249699	AGTTCACGGACACGAATGCA	60.250	50.000	0.00	0.00	44.60	3.96
399	411	0.163788	CAGTTCACGGACACGAATGC	59.836	55.000	0.00	0.00	44.60	3.56
412	424	4.020617	CAGCGGGAGGCCAGTTCA	62.021	66.667	5.01	0.00	45.17	3.18
416	428	4.463879	CAGACAGCGGGAGGCCAG	62.464	72.222	5.01	0.00	45.17	4.85
444	456	2.099756	GGCATCCCTCAATTTTCTTCCG	59.900	50.000	0.00	0.00	0.00	4.30
446	458	3.808466	GGGCATCCCTCAATTTTCTTC	57.192	47.619	0.00	0.00	41.34	2.87
459	471	1.475930	GCTGTTCCTCTTAGGGCATCC	60.476	57.143	0.00	0.00	35.59	3.51
541	593	3.123674	CCTGTGAGTAGGTTGCGAC	57.876	57.895	0.00	0.00	32.99	5.19
604	670	6.529696	CGTTTCTTCAGTAGCAGATCTTTTC	58.470	40.000	0.00	0.00	0.00	2.29
614	680	2.289547	TGGTTTGCGTTTCTTCAGTAGC	59.710	45.455	0.00	0.00	0.00	3.58
615	681	4.545823	TTGGTTTGCGTTTCTTCAGTAG	57.454	40.909	0.00	0.00	0.00	2.57
616	682	5.508200	AATTGGTTTGCGTTTCTTCAGTA	57.492	34.783	0.00	0.00	0.00	2.74
892	1279	5.006746	GGAGGTAATTTCTTAGCATCGTGTG	59.993	44.000	0.00	0.00	37.72	3.82
950	1400	2.041251	AGAGTACTACGGCTGAGGAC	57.959	55.000	0.00	0.00	0.00	3.85
972	1422	1.076677	ACTGGGAGGTTCTAACTCGGA	59.923	52.381	0.00	0.00	35.82	4.55
975	1425	3.514309	TGCTAACTGGGAGGTTCTAACTC	59.486	47.826	0.00	0.00	0.00	3.01
977	1427	3.975168	TGCTAACTGGGAGGTTCTAAC	57.025	47.619	0.00	0.00	0.00	2.34
979	1432	5.071788	CCATATTGCTAACTGGGAGGTTCTA	59.928	44.000	0.00	0.00	0.00	2.10
1215	1710	2.106166	AGATGATCATGGGTGAGAAGGC	59.894	50.000	14.30	0.00	37.87	4.35
1399	1920	6.032956	TGAAACGGAATACAGATACACACT	57.967	37.500	0.00	0.00	0.00	3.55
1405	1926	7.327975	ACATGAACTGAAACGGAATACAGATA	58.672	34.615	0.00	0.00	34.88	1.98
1415	1936	7.692908	AAAATACAAACATGAACTGAAACGG	57.307	32.000	0.00	0.00	0.00	4.44
1507	2041	7.773489	TGATGGGATGTGTTTATTCAAGAAA	57.227	32.000	0.00	0.00	0.00	2.52
1540	2082	7.731882	TTAGAGAGTTCTACGATCGATGATT	57.268	36.000	24.34	10.07	35.67	2.57
1554	2096	5.794894	TGGGACTTTGTGATTAGAGAGTTC	58.205	41.667	0.00	0.00	0.00	3.01
1766	2347	2.621556	AAAGGCCTGGGAATTGCTTA	57.378	45.000	5.69	0.00	0.00	3.09
1767	2348	1.733385	AAAAGGCCTGGGAATTGCTT	58.267	45.000	5.69	0.00	0.00	3.91
1826	2408	7.613801	TGGTTGGGGTTTACATATATCATATGC	59.386	37.037	0.00	0.00	0.00	3.14
1966	2548	2.493030	GTGTGCCATGCCATGAGC	59.507	61.111	6.18	8.62	44.14	4.26
2064	2646	4.148838	AGTCAGGCTCTCATATACACCTC	58.851	47.826	0.00	0.00	0.00	3.85
2080	2662	8.024145	AGTTCTACCATTCCTATTAAGTCAGG	57.976	38.462	0.00	0.00	0.00	3.86
2122	2704	2.158173	TGGCCTCCCAAAAAGAAGGAAT	60.158	45.455	3.32	0.00	38.46	3.01
2144	2727	5.741982	GCTTAACTTTGAAGTTCTTTGCGAA	59.258	36.000	12.05	0.19	45.65	4.70
2157	2740	3.396260	ACCTAGCACGCTTAACTTTGA	57.604	42.857	0.00	0.00	0.00	2.69
2184	2767	2.841266	TCGGTCACCCATCCTTAAATCA	59.159	45.455	0.00	0.00	0.00	2.57
2190	2773	1.553690	CCAGTCGGTCACCCATCCTT	61.554	60.000	0.00	0.00	0.00	3.36
2192	2775	1.550130	TTCCAGTCGGTCACCCATCC	61.550	60.000	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.